BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027943
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5LWJ5|DNAJ_RUEPO Chaperone protein DnaJ OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=dnaJ PE=3 SV=1
Length = 381
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV SA E+K A+R K K+ HPD N+D D+++L + + +AYE+L + +
Sbjct: 7 YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|P29944|YCB2_PSEDE Uncharacterized 19.0 kDa protein in cobS 5'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 171
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 21 ISPNCHNFPSNSTTRR---------RFPSKFTVNCTERTGE----NASTPPSTSSAYAIL 67
++ N N P+ S TR R P F R+G + A+ L
Sbjct: 59 VNKNAKNGPTQSQTRSGSAGAQARMRDPFGFVSEARARSGRPEPRQRKLKTLEAKAFETL 118
Query: 68 GVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
G+ S + A++KAA++ VK++HPD N R S+ R +IQAY++L +
Sbjct: 119 GLGASATTADIKAAYKDLVKKHHPDANGGDRGSEERFRAVIQAYQLLKQ 167
>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=dnaJ PE=3 SV=1
Length = 386
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
Y ILGV+ S AE+K A+R KQYHPD+N + ++A + I +AYE+L++ +R
Sbjct: 8 YEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARY 67
Query: 121 EIIERECIDP 130
+ DP
Sbjct: 68 DQFGHSAFDP 77
>sp|A1B4F0|DNAJ_PARDP Chaperone protein DnaJ OS=Paracoccus denitrificans (strain Pd 1222)
GN=dnaJ PE=3 SV=1
Length = 384
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV SA E+K A+RAK KQ HPD N+D + S+A + + +AYE L + +
Sbjct: 7 YEVLGVARGASADEIKKAYRAKAKQLHPDRNKDCKVSEAAFKEVNEAYECLKDDQKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|B8I304|DNAJ_CLOCE Chaperone protein DnaJ OS=Clostridium cellulolyticum (strain ATCC
35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1
Length = 379
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
Y +LGV+ + S AELK A+R K+YHPDVN ++A + + +AYEIL++ SR
Sbjct: 8 YEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGDTTAEAKFKEVNEAYEILSDSQKRSRY 67
Query: 121 EIIERECIDP 130
+ DP
Sbjct: 68 DQFGHAGTDP 77
>sp|P50026|DNAJ_SYNE7 Chaperone protein DnaJ OS=Synechococcus elongatus (strain PCC 7942)
GN=dnaJ PE=3 SV=2
Length = 287
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT------EY 117
YA+LG+ S A +KAAFR +Q HPD+N R ++ ++I +AYEIL+ EY
Sbjct: 8 YALLGIPQSADQAAIKAAFRKLARQCHPDLNPGDRQAEERFKQISEAYEILSDPDRRAEY 67
Query: 118 SRLEIIERE-----CIDPFDYPECEALDVFVNEVL 147
R ++ DY + D+FV+E+L
Sbjct: 68 QRFSRYWQQQGAASVGSDDDYGDFPDFDIFVDELL 102
>sp|B1ZUS0|DNAJ_OPITP Chaperone protein DnaJ OS=Opitutus terrae (strain DSM 11246 /
PB90-1) GN=dnaJ PE=3 SV=1
Length = 382
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y +LGV+ S ELK A+R K QYHPD N ++++ + ++I AYE+L +
Sbjct: 7 YELLGVQKGASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKD 59
>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LG+ S SA E+K A+R KQYHPD+N++ +D + I +AYE+L++ R +
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEVLSDSQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|A7NS65|DNAJ_ROSCS Chaperone protein DnaJ OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=dnaJ PE=3 SV=1
Length = 370
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV+ + S E+K AFR +QYHPDVN+ D++A + I +AYE+L++ + +
Sbjct: 8 YEVLGVQRNASQDEIKKAFRRLARQYHPDVNK-APDAEAKFKEINEAYEVLSDPEKRSMY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027
/ DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1
Length = 357
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
YAILGV+ + S ++K AFR K+YHPD N ++++ + I +AYE+L++
Sbjct: 6 YAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSD 58
>sp|B8CXL0|DNAJ_HALOH Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1
Length = 375
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
++ Y ILGV E+K A+R ++YHPD+N+D D++ + I +AYEIL++
Sbjct: 3 TSKDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSD 60
>sp|Q1GKS4|DNAJ_RUEST Chaperone protein DnaJ OS=Ruegeria sp. (strain TM1040) GN=dnaJ PE=3
SV=1
Length = 385
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV SA E+K FR K K+ HPD N D D++A + +AY++L + R
Sbjct: 7 YEVLGVSKGASADEIKKGFRKKAKELHPDRNADNPDAEAQFKEANEAYDVLKDPERKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|A5UYW4|DNAJ_ROSS1 Chaperone protein DnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ
PE=3 SV=1
Length = 370
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV+ + S E+K AFR +QYHPDVN+ D++A + I +AYE+L++ + +
Sbjct: 8 YEVLGVQRNASQDEIKKAFRRLARQYHPDVNK-APDAEAKFKEINEAYEVLSDPEKRSMY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q49Y21|DNAJ_STAS1 Chaperone protein DnaJ OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ
PE=3 SV=1
Length = 378
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LGV S S E+K A+R KQYHPD+N++ +D + I +AYE+L++ ++
Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKQYHPDINKE-EGADEKFKEISEAYEVLSDENK 61
>sp|Q4UJK6|DNAJ_RICFE Chaperone protein DnaJ OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=dnaJ PE=3 SV=1
Length = 371
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y ILGV + S A+LK A+ KQYHPD D +D++ + I AY++L + +
Sbjct: 6 YQILGVSKTASQADLKKAYLKLAKQYHPDTT-DAKDAEKKFKEINSAYDVLKDEQKRAAY 64
Query: 124 ERECIDPFDYPE 135
+R D F Y +
Sbjct: 65 DRFGHDTFQYQQ 76
>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=dnaJ PE=3 SV=1
Length = 376
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LGV S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=dnaJ PE=3 SV=1
Length = 376
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LGV S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|B1YKT0|DNAJ_EXIS2 Chaperone protein DnaJ OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=dnaJ PE=3 SV=1
Length = 368
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y +LGV SAAE+K A+R + YHPDVN++ D+D + + +AYE+L++
Sbjct: 7 YEVLGVARDASAAEIKRAYRKLARTYHPDVNKEA-DADQKFKELSEAYEVLSD 58
>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
YAILGV S E+K A+R +YHPD N ++++ + I +AY +L++ +
Sbjct: 5 YAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKKRAAY 64
Query: 124 ERECIDPFDYPECEALDVFVNEVLCV 149
+R ++ +Y + D+F EV V
Sbjct: 65 DRGHLEAPEYRPEDLFDLFFQEVFGV 90
>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=dnaJ1 PE=3 SV=1
Length = 350
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
YAILGV S E+K A+R +YHPD N ++++ + I +AY +L++ +
Sbjct: 5 YAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKKRAAY 64
Query: 124 ERECIDPFDYPECEALDVFVNEVLCV 149
+R ++ +Y + D+F EV V
Sbjct: 65 DRGHLEAPEYRPEDLFDLFFQEVFGV 90
>sp|Q7M9T3|DNAJ_WOLSU Chaperone protein DnaJ OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaJ
PE=3 SV=1
Length = 374
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y IL +E S S E+K A+R +YHPD N +++ + +R+ +AY++L++ + ++
Sbjct: 7 YEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAEEMFKRVNEAYQVLSDEGKRQLY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q74H58|DNAJ_GEOSL Chaperone protein DnaJ OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=dnaJ PE=3 SV=1
Length = 373
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y +LGV + S E+K AFR QYHPD N D ++++ + I +AYE+L++
Sbjct: 9 YEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSD 61
>sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mdj1 PE=4 SV=1
Length = 528
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y LGV S SA+E+K+A+ KQYHPD N D D + I QAYE+L + + +
Sbjct: 88 YKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFV-EIKQAYEVLQDPKKKKAF 146
Query: 124 ERECIDPFDYPECEALD 140
+ F E D
Sbjct: 147 DTYGAGAFKNGEFTGGD 163
>sp|P73097|DNAJ2_SYNY3 Chaperone protein DnaJ 2 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=dnaJ2 PE=3 SV=1
Length = 307
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y ILGV + +A E+K +FR +QYHPDVN + + ++ + I +AY++L++ ++ +
Sbjct: 8 YQILGVPRNATAEEIKKSFRKLARQYHPDVNPNDKTAEEKFKDINEAYDVLSDETKRREL 67
Query: 124 ERECIDPFDYP 134
+ F P
Sbjct: 68 DSRLFGRFRRP 78
>sp|B1XQF6|DNAJ_SYNP2 Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=dnaJ PE=3 SV=1
Length = 378
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV C ELK A+R +QYHPDVN+D ++ + I +AYE+L+E
Sbjct: 6 YEILGVSRDCGKDELKRAYRRLARQYHPDVNKD-PGAEEKFKEINRAYEVLSE 57
>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2
SV=1
Length = 370
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNR-DGRDSDALIRRIIQAYEILTEYSR 119
Y ILGV S + AE+K A+R K+YHPD+N+ DG ++A + + +AYE+L++ +
Sbjct: 8 YEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDG--AEAKFKEVQEAYEVLSDSQK 62
>sp|P25686|DNJB2_HUMAN DnaJ homolog subfamily B member 2 OS=Homo sapiens GN=DNAJB2 PE=1
SV=3
Length = 324
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSR 119
+S Y IL V S SA ++K A+R K Q+HPD N D ++ ++ + + +AYE+L++ +
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 120 LEIIER 125
EI +R
Sbjct: 62 REIYDR 67
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=dnaJ PE=3 SV=1
Length = 373
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LGV S S E+K A+R K+YHPD+N++ +D + I +AYE+L++ ++
Sbjct: 7 YEVLGVNKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDENK 61
>sp|Q24SS4|DNAJ_DESHY Chaperone protein DnaJ OS=Desulfitobacterium hafniense (strain Y51)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
Y +LGV S E+K A+R +QYHPDVN +D++ + +AY++L++ +R
Sbjct: 6 YEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARY 65
Query: 121 EIIERECIDP 130
+ + DP
Sbjct: 66 DQMGHSAFDP 75
>sp|B8FUN3|DNAJ_DESHD Chaperone protein DnaJ OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=dnaJ PE=3 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
Y +LGV S E+K A+R +QYHPDVN +D++ + +AY++L++ +R
Sbjct: 6 YEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARY 65
Query: 121 EIIERECIDP 130
+ + DP
Sbjct: 66 DQMGHSAFDP 75
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LGV S S E+K A+R K+YHPD+N++ +D + I +AYE+L++ ++
Sbjct: 7 YEVLGVNKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDENK 61
>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LG+ S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=dnaJ PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LG+ S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a
(strain 10403S) GN=dnaJ PE=3 SV=1
Length = 377
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LG+ S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=dnaJ PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
Y +LG+ S SA E+K A+R KQYHPD+N++ +D + I +AYE L++ R +
Sbjct: 7 YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEALSDPQKRAQY 65
Query: 123 IERECIDP 130
+ +DP
Sbjct: 66 DQYGHVDP 73
>sp|B1J5W7|CBPA_PSEPW Curved DNA-binding protein OS=Pseudomonas putida (strain W619)
GN=cbpA PE=3 SV=1
Length = 317
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y ILGVEP+ +KAA+R ++YHPDV+++ RD++ + +AYE+L + +
Sbjct: 7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKE-RDAEEKFKEANEAYEVLGDAQK 61
>sp|B3EE31|DNAJ_CHLL2 Chaperone protein DnaJ OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=dnaJ PE=3 SV=1
Length = 401
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
Y +LGV S S E+K A+R QYHPD N D +D++ + + +AYE+L+
Sbjct: 6 YEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLS 57
>sp|A3PNM0|DNAJ_RHOS1 Chaperone protein DnaJ OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=dnaJ PE=3 SV=1
Length = 382
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV + SA ELK A+R K K+ HPD N D ++A + + +AY++L + +
Sbjct: 7 YEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|B9KPP3|DNAJ_RHOSK Chaperone protein DnaJ OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=dnaJ PE=3 SV=1
Length = 381
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV + SA ELK A+R K K+ HPD N D ++A + + +AY++L + +
Sbjct: 7 YEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q3IYM8|DNAJ_RHOS4 Chaperone protein DnaJ OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaJ PE=3 SV=1
Length = 382
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV + SA ELK A+R K K+ HPD N D ++A + + +AY++L + +
Sbjct: 7 YEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q67S53|DNAJ_SYMTH Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=dnaJ PE=3 SV=1
Length = 386
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV + + AE+K AFR ++YHPD N+D D+ + I +AY++L++
Sbjct: 10 YEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQVLSD 62
>sp|A4WW88|DNAJ_RHOS5 Chaperone protein DnaJ OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=dnaJ PE=3 SV=1
Length = 382
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV SA ELK A+R K K+ HPD N D ++A + + +AY++L + +
Sbjct: 7 YEVLGVSRGASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAY 66
Query: 124 ER 125
+R
Sbjct: 67 DR 68
>sp|Q88DH7|CBPA_PSEPK Curved DNA-binding protein OS=Pseudomonas putida (strain KT2440)
GN=cbpA PE=3 SV=1
Length = 319
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y ILGVEP+ +KAA+R ++YHPDV+++ RD++ + +AYE+L + +
Sbjct: 7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKE-RDAEEKFKEANEAYEVLGDAQK 61
>sp|A5W9N6|CBPA_PSEP1 Curved DNA-binding protein OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=cbpA PE=3 SV=1
Length = 319
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y ILGVEP+ +KAA+R ++YHPDV+++ RD++ + +AYE+L + +
Sbjct: 7 YKILGVEPTADEKAIKAAYRKLARKYHPDVSKE-RDAEEKFKEANEAYEVLGDAQK 61
>sp|C4L424|DNAJ_EXISA Chaperone protein DnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283
/ AT1b) GN=dnaJ PE=3 SV=1
Length = 368
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LG++ S SA ++K A+R +QYHPD+N++ +D + I +AYE+L++ +
Sbjct: 7 YEVLGLDKSASAQDIKRAYRKLARQYHPDINQEADAADKF-KEIGEAYEVLSDEQK 61
>sp|Q48E63|DNAJ_PSE14 Chaperone protein DnaJ OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaJ PE=3 SV=1
Length = 380
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LGVE S A+LK A+R ++HPD N D + S+ L + +AYE+L++ S+
Sbjct: 7 YEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEELFKEANEAYEVLSDASK 62
>sp|P45555|DNAJ_STAAU Chaperone protein DnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1
Length = 379
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LG+ S E+K A+R K+YHPD+N++ +D + I +AYE+L++ ++
Sbjct: 7 YEVLGISKDASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDNK---- 61
Query: 124 ERECIDPFDY 133
R ID F +
Sbjct: 62 -RATIDQFGH 70
>sp|Q4ZNP8|DNAJ_PSEU2 Chaperone protein DnaJ OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=dnaJ PE=3 SV=1
Length = 380
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y +LGVE S A+LK A+R ++HPD N D + S+ L + +AYE+L++ S+
Sbjct: 7 YEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEELFKEANEAYEVLSDASK 62
>sp|Q1MN12|DNAJ_RHIL3 Chaperone protein DnaJ OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=dnaJ PE=3 SV=1
Length = 375
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y LGV S ELK+AFR +YHPD N D +D++ + I +AYE+L +
Sbjct: 7 YETLGVAKSADEKELKSAFRKLAMKYHPDKNPDDKDAERKFKEINEAYEMLKD 59
>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3
SV=1
Length = 384
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV+ + S E+K A+R K+YHPD+N ++++ + I +AYEIL++
Sbjct: 7 YEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,516,128
Number of Sequences: 539616
Number of extensions: 3166007
Number of successful extensions: 8161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7227
Number of HSP's gapped (non-prelim): 933
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)