Query 027943
Match_columns 216
No_of_seqs 347 out of 2256
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.7E-26 3.8E-31 202.7 8.6 75 58-132 1-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 3.1E-24 6.7E-29 184.5 8.1 75 57-131 12-86 (336)
3 PRK14288 chaperone protein Dna 99.9 9.7E-22 2.1E-26 175.3 8.1 71 61-131 3-73 (369)
4 KOG0716 Molecular chaperone (D 99.8 1.2E-21 2.6E-26 163.9 6.7 97 57-153 27-140 (279)
5 PRK14296 chaperone protein Dna 99.8 2.5E-21 5.5E-26 172.7 8.0 71 60-131 3-73 (372)
6 KOG0712 Molecular chaperone (D 99.8 5.6E-21 1.2E-25 166.0 7.8 69 60-131 3-71 (337)
7 PRK14286 chaperone protein Dna 99.8 6.3E-21 1.4E-25 170.2 8.1 71 60-130 3-73 (372)
8 PRK14279 chaperone protein Dna 99.8 9E-21 1.9E-25 170.3 7.7 69 60-128 8-76 (392)
9 PRK14282 chaperone protein Dna 99.8 2.7E-20 5.9E-25 166.1 8.2 71 60-130 3-74 (369)
10 PTZ00037 DnaJ_C chaperone prot 99.8 3.4E-20 7.3E-25 167.5 7.9 71 57-131 24-94 (421)
11 PRK14294 chaperone protein Dna 99.8 4.4E-20 9.6E-25 164.6 8.3 73 59-131 2-74 (366)
12 PRK14287 chaperone protein Dna 99.8 4.8E-20 1E-24 164.5 8.3 70 60-130 3-72 (371)
13 PRK14277 chaperone protein Dna 99.8 4.8E-20 1E-24 165.4 8.2 72 60-131 4-75 (386)
14 PRK14285 chaperone protein Dna 99.8 4.8E-20 1E-24 164.2 7.8 71 61-131 3-73 (365)
15 PRK14297 chaperone protein Dna 99.8 4.5E-20 9.7E-25 165.3 7.4 72 60-131 3-74 (380)
16 PRK14301 chaperone protein Dna 99.8 5.5E-20 1.2E-24 164.3 7.6 72 60-131 3-74 (373)
17 PRK14276 chaperone protein Dna 99.8 8.4E-20 1.8E-24 163.5 8.5 71 60-131 3-73 (380)
18 PRK14295 chaperone protein Dna 99.8 8.9E-20 1.9E-24 163.7 8.4 72 60-131 8-83 (389)
19 PRK14283 chaperone protein Dna 99.8 8.7E-20 1.9E-24 163.3 8.2 71 60-131 4-74 (378)
20 PRK14299 chaperone protein Dna 99.8 1.2E-19 2.7E-24 157.1 8.1 69 60-129 3-71 (291)
21 PRK14284 chaperone protein Dna 99.8 1.2E-19 2.5E-24 163.1 7.9 71 61-131 1-71 (391)
22 PRK10767 chaperone protein Dna 99.8 1.3E-19 2.7E-24 161.9 8.0 72 60-131 3-74 (371)
23 PRK14298 chaperone protein Dna 99.8 1.3E-19 2.8E-24 162.1 7.8 71 60-131 4-74 (377)
24 PRK14291 chaperone protein Dna 99.8 1.6E-19 3.4E-24 161.9 8.3 71 60-131 2-72 (382)
25 PRK14280 chaperone protein Dna 99.8 1.9E-19 4.2E-24 161.0 8.6 70 60-130 3-72 (376)
26 PF00226 DnaJ: DnaJ domain; I 99.8 2.4E-19 5.1E-24 121.2 6.6 63 62-124 1-64 (64)
27 PRK14281 chaperone protein Dna 99.8 1.9E-19 4.1E-24 162.0 7.3 71 61-131 3-73 (397)
28 PRK14278 chaperone protein Dna 99.8 2.5E-19 5.3E-24 160.3 6.8 68 61-129 3-70 (378)
29 PRK14290 chaperone protein Dna 99.8 7.7E-19 1.7E-23 156.5 7.7 71 61-131 3-74 (365)
30 KOG0715 Molecular chaperone (D 99.8 1.1E-18 2.4E-23 150.6 8.3 73 57-130 39-111 (288)
31 PRK14289 chaperone protein Dna 99.8 9.8E-19 2.1E-23 156.9 8.2 71 60-130 4-74 (386)
32 KOG0717 Molecular chaperone (D 99.8 7.6E-19 1.6E-23 156.0 6.8 71 57-127 4-75 (508)
33 PRK14300 chaperone protein Dna 99.8 1.3E-18 2.8E-23 155.5 8.0 70 61-131 3-72 (372)
34 TIGR02349 DnaJ_bact chaperone 99.8 1.5E-18 3.2E-23 154.2 7.8 69 62-131 1-69 (354)
35 PTZ00341 Ring-infected erythro 99.7 2.7E-18 5.9E-23 164.1 9.3 76 57-133 569-644 (1136)
36 PRK10266 curved DNA-binding pr 99.7 3.3E-18 7.1E-23 149.2 8.0 68 60-128 3-70 (306)
37 KOG0691 Molecular chaperone (D 99.7 2.8E-18 6.1E-23 147.5 7.3 72 60-131 4-75 (296)
38 PRK14292 chaperone protein Dna 99.7 3.5E-18 7.6E-23 152.6 7.7 69 61-130 2-70 (371)
39 KOG0718 Molecular chaperone (D 99.7 3.4E-18 7.3E-23 152.0 7.1 76 57-132 5-83 (546)
40 PRK14293 chaperone protein Dna 99.7 5.9E-18 1.3E-22 151.3 8.1 70 61-131 3-72 (374)
41 smart00271 DnaJ DnaJ molecular 99.7 2.2E-17 4.7E-22 109.9 6.4 58 61-118 1-59 (60)
42 cd06257 DnaJ DnaJ domain or J- 99.7 4.9E-17 1.1E-21 106.2 6.6 55 62-116 1-55 (55)
43 KOG0721 Molecular chaperone (D 99.7 5.8E-17 1.3E-21 131.8 7.6 73 57-129 95-167 (230)
44 KOG0719 Molecular chaperone (D 99.7 3.6E-17 7.8E-22 134.2 6.2 71 59-129 12-84 (264)
45 PHA03102 Small T antigen; Revi 99.7 1.6E-16 3.5E-21 124.6 6.5 66 61-130 5-72 (153)
46 TIGR03835 termin_org_DnaJ term 99.6 4.3E-16 9.2E-21 146.3 8.4 71 61-132 2-72 (871)
47 COG2214 CbpA DnaJ-class molecu 99.6 7E-16 1.5E-20 126.0 7.4 68 59-126 4-72 (237)
48 KOG0624 dsRNA-activated protei 99.6 6.5E-16 1.4E-20 134.0 6.6 74 57-131 390-466 (504)
49 PRK05014 hscB co-chaperone Hsc 99.6 5.9E-15 1.3E-19 118.5 7.8 66 62-127 2-74 (171)
50 PRK01356 hscB co-chaperone Hsc 99.6 8.7E-15 1.9E-19 116.9 7.0 67 61-127 2-73 (166)
51 PRK00294 hscB co-chaperone Hsc 99.5 1.8E-14 3.9E-19 115.7 8.0 69 59-127 2-77 (173)
52 PRK03578 hscB co-chaperone Hsc 99.5 2E-14 4.4E-19 115.8 8.1 66 61-126 6-78 (176)
53 PTZ00100 DnaJ chaperone protei 99.5 5.2E-14 1.1E-18 105.3 6.3 55 57-115 61-115 (116)
54 KOG0720 Molecular chaperone (D 99.5 5.5E-14 1.2E-18 125.2 5.7 69 58-127 232-300 (490)
55 KOG0550 Molecular chaperone (D 99.4 1.8E-13 3.9E-18 120.9 6.4 68 59-126 371-439 (486)
56 KOG0722 Molecular chaperone (D 99.4 1.3E-13 2.9E-18 114.7 4.1 67 60-127 32-98 (329)
57 PRK09430 djlA Dna-J like membr 99.4 3.8E-13 8.3E-18 115.2 7.0 61 57-117 196-263 (267)
58 KOG0714 Molecular chaperone (D 99.4 3.4E-13 7.4E-18 115.0 5.0 70 60-129 2-72 (306)
59 PRK01773 hscB co-chaperone Hsc 99.3 6.6E-12 1.4E-16 100.9 7.6 67 61-127 2-75 (173)
60 PHA02624 large T antigen; Prov 99.3 3.2E-12 6.8E-17 119.0 6.1 60 60-123 10-71 (647)
61 COG5407 SEC63 Preprotein trans 99.3 3.7E-12 8E-17 113.5 4.7 71 59-129 96-171 (610)
62 TIGR00714 hscB Fe-S protein as 99.1 1.3E-10 2.7E-15 92.2 7.1 55 73-127 3-62 (157)
63 PF13459 Fer4_15: 4Fe-4S singl 99.0 2.4E-10 5.1E-15 77.4 2.9 57 141-201 1-65 (65)
64 KOG1150 Predicted molecular ch 99.0 6.9E-10 1.5E-14 89.7 5.8 64 58-121 50-114 (250)
65 COG5269 ZUO1 Ribosome-associat 99.0 8.9E-10 1.9E-14 92.8 5.5 69 60-128 42-115 (379)
66 PF13370 Fer4_13: 4Fe-4S singl 98.9 2.9E-10 6.3E-15 75.3 1.6 56 143-201 1-58 (58)
67 COG1141 Fer Ferredoxin [Energy 98.9 1.4E-09 3E-14 73.9 3.4 59 141-203 3-68 (68)
68 KOG0723 Molecular chaperone (D 98.6 6.6E-08 1.4E-12 70.6 5.5 58 56-117 51-108 (112)
69 KOG1789 Endocytosis protein RM 98.6 8.9E-08 1.9E-12 93.1 6.0 58 56-116 1276-1337(2235)
70 KOG0568 Molecular chaperone (D 98.4 4E-07 8.7E-12 75.4 5.6 56 60-116 46-102 (342)
71 PF06902 Fer4_19: Divergent 4F 98.2 1.3E-06 2.9E-11 58.9 3.1 59 138-203 5-63 (64)
72 KOG3192 Mitochondrial J-type c 97.9 2.8E-05 6.1E-10 60.7 5.6 68 58-125 5-79 (168)
73 COG1076 DjlA DnaJ-domain-conta 97.3 0.00019 4.2E-09 57.7 2.9 54 61-114 113-173 (174)
74 COG1076 DjlA DnaJ-domain-conta 97.0 0.0006 1.3E-08 54.9 3.0 69 63-131 3-78 (174)
75 KOG0431 Auxilin-like protein a 96.9 0.00099 2.1E-08 61.3 4.5 42 72-113 399-447 (453)
76 PF03656 Pam16: Pam16; InterP 96.8 0.003 6.5E-08 48.3 5.3 59 57-119 54-112 (127)
77 COG3592 Uncharacterized conser 96.3 0.0025 5.5E-08 42.9 2.0 60 137-203 14-73 (74)
78 PF13446 RPT: A repeated domai 92.2 0.34 7.4E-06 31.9 4.5 49 58-117 2-50 (62)
79 PF11833 DUF3353: Protein of u 89.1 0.91 2E-05 37.2 5.2 39 70-116 1-39 (194)
80 TIGR03048 PS_I_psaC photosyste 89.1 0.23 4.9E-06 34.4 1.4 59 141-202 3-65 (80)
81 CHL00065 psaC photosystem I su 88.3 0.15 3.3E-06 35.4 0.2 59 142-203 5-67 (81)
82 KOG0724 Zuotin and related mol 86.8 0.72 1.6E-05 40.6 3.6 53 73-125 4-60 (335)
83 PLN00071 photosystem I subunit 86.6 0.32 6.9E-06 33.7 1.0 58 142-202 5-66 (81)
84 PF14687 DUF4460: Domain of un 85.4 2.1 4.5E-05 32.0 4.9 47 71-117 4-54 (112)
85 PF13187 Fer4_9: 4Fe-4S diclus 84.4 0.2 4.3E-06 31.8 -0.9 50 147-199 1-55 (55)
86 PRK08348 NADH-plastoquinone ox 83.7 0.95 2.1E-05 33.8 2.5 59 140-204 36-95 (120)
87 PRK09626 oorD 2-oxoglutarate-a 83.5 0.37 8E-06 35.1 0.1 63 139-206 9-77 (103)
88 PRK09623 vorD 2-ketoisovalerat 83.4 1 2.3E-05 32.9 2.5 59 139-204 44-103 (105)
89 PRK07569 bidirectional hydroge 83.1 1.9 4E-05 36.2 4.3 118 75-204 81-212 (234)
90 PRK02651 photosystem I subunit 82.8 0.9 1.9E-05 31.3 1.9 54 145-201 8-65 (81)
91 COG2221 DsrA Dissimilatory sul 81.0 2.4 5.3E-05 37.2 4.3 47 151-203 145-193 (317)
92 PF14697 Fer4_21: 4Fe-4S diclu 80.7 0.65 1.4E-05 30.4 0.5 53 142-201 2-59 (59)
93 COG1142 HycB Fe-S-cluster-cont 80.5 0.34 7.4E-06 38.7 -1.0 66 139-208 75-145 (165)
94 KOG3442 Uncharacterized conser 76.6 5.8 0.00013 30.1 4.5 59 57-119 55-113 (132)
95 TIGR01582 FDH-beta formate deh 76.0 0.81 1.8E-05 39.7 -0.1 64 141-210 119-188 (283)
96 PRK09625 porD pyruvate flavodo 74.9 1.9 4.1E-05 33.1 1.6 58 140-203 53-110 (133)
97 PRK05113 electron transport co 74.3 3 6.6E-05 34.0 2.8 60 140-205 108-167 (191)
98 PF12797 Fer4_2: 4Fe-4S bindin 73.9 0.71 1.5E-05 24.3 -0.6 20 140-162 2-21 (22)
99 PRK13984 putative oxidoreducta 73.6 1.8 3.8E-05 41.3 1.4 59 142-203 41-107 (604)
100 TIGR00403 ndhI NADH-plastoquin 71.9 2.3 4.9E-05 34.4 1.6 66 140-208 56-128 (183)
101 TIGR02060 aprB adenosine phosp 71.1 4.1 8.9E-05 31.2 2.7 66 141-210 3-73 (132)
102 PRK10882 hydrogenase 2 protein 69.0 2.8 6E-05 37.2 1.6 64 141-207 138-210 (328)
103 TIGR02951 DMSO_dmsB DMSO reduc 68.6 3 6.5E-05 32.7 1.5 61 141-207 90-156 (161)
104 COG1146 Ferredoxin [Energy pro 68.3 7.5 0.00016 25.8 3.3 60 142-206 4-65 (68)
105 PF13247 Fer4_11: 4Fe-4S diclu 68.0 0.81 1.8E-05 33.3 -1.7 62 140-204 34-98 (98)
106 PRK09898 hypothetical protein; 67.9 5.4 0.00012 32.8 3.0 57 141-207 149-206 (208)
107 TIGR02936 fdxN_nitrog ferredox 67.1 2.1 4.6E-05 30.0 0.4 23 139-164 14-36 (91)
108 TIGR02064 dsrA sulfite reducta 66.9 3 6.4E-05 38.1 1.3 17 187-203 247-263 (402)
109 COG0437 HybA Fe-S-cluster-cont 66.6 2.4 5.2E-05 35.0 0.6 65 141-209 95-163 (203)
110 TIGR01944 rnfB electron transp 66.2 3.8 8.3E-05 32.4 1.7 57 140-202 107-163 (165)
111 TIGR02163 napH_ ferredoxin-typ 65.1 5.3 0.00011 34.0 2.5 54 144-202 199-254 (255)
112 TIGR01973 NuoG NADH-quinone ox 64.4 7.5 0.00016 37.1 3.6 115 74-200 76-200 (603)
113 PRK12387 formate hydrogenlyase 62.8 3.4 7.3E-05 33.2 0.8 67 140-209 32-100 (180)
114 PRK08318 dihydropyrimidine deh 61.7 7.7 0.00017 35.3 3.1 61 141-206 337-402 (420)
115 TIGR01971 NuoI NADH-quinone ox 60.5 2.2 4.8E-05 31.7 -0.6 61 146-209 43-109 (122)
116 PRK05888 NADH dehydrogenase su 59.7 7 0.00015 30.8 2.1 57 147-206 59-121 (164)
117 PRK09624 porD pyuvate ferredox 59.4 6.1 0.00013 28.9 1.6 56 142-204 47-103 (105)
118 PRK09129 NADH dehydrogenase su 59.0 12 0.00026 36.8 4.1 114 74-200 78-202 (776)
119 PTZ00305 NADH:ubiquinone oxido 58.3 7.9 0.00017 33.8 2.3 120 75-206 147-277 (297)
120 PRK08222 hydrogenase 4 subunit 57.6 2.8 6.1E-05 33.8 -0.5 63 141-206 33-97 (181)
121 PF00037 Fer4: 4Fe-4S binding 57.6 6.4 0.00014 20.7 1.1 10 143-152 3-12 (24)
122 PRK09477 napH quinol dehydroge 57.4 10 0.00022 32.5 2.9 59 143-204 205-264 (271)
123 CHL00014 ndhI NADH dehydrogena 54.9 5.3 0.00011 31.7 0.7 65 141-208 54-125 (167)
124 PF07709 SRR: Seven Residue Re 54.5 7.8 0.00017 17.8 1.0 13 103-115 2-14 (14)
125 TIGR02179 PorD_KorD 2-oxoacid: 54.2 10 0.00022 25.6 1.9 57 141-203 20-76 (78)
126 COG1245 Predicted ATPase, RNas 52.9 13 0.00028 34.8 2.9 61 142-205 7-73 (591)
127 PRK06991 ferredoxin; Provision 52.9 6.3 0.00014 34.0 0.9 58 141-205 80-138 (270)
128 PRK12769 putative oxidoreducta 52.7 6 0.00013 38.1 0.8 65 141-208 80-151 (654)
129 COG5552 Uncharacterized conser 52.7 64 0.0014 22.3 5.6 30 61-90 3-32 (88)
130 TIGR03224 benzo_boxA benzoyl-C 51.6 9.8 0.00021 34.7 2.0 55 140-201 4-58 (411)
131 PRK14028 pyruvate ferredoxin o 50.1 6.8 0.00015 34.2 0.7 60 141-203 242-310 (312)
132 PF12837 Fer4_6: 4Fe-4S bindin 49.9 2.2 4.7E-05 22.8 -1.6 19 142-163 3-21 (24)
133 PRK10330 formate dehydrogenase 49.6 9 0.0002 30.6 1.3 24 189-212 142-165 (181)
134 TIGR02512 Fe_only_hydrog hydro 48.6 6.9 0.00015 35.2 0.5 59 141-202 2-70 (374)
135 TIGR02494 PFLE_PFLC glycyl-rad 46.7 7 0.00015 33.5 0.2 60 139-203 41-103 (295)
136 PRK08493 NADH dehydrogenase su 46.1 18 0.00038 36.2 2.9 77 76-165 78-157 (819)
137 PRK12809 putative oxidoreducta 45.7 12 0.00027 35.9 1.8 64 141-209 80-144 (639)
138 TIGR03149 cyt_nit_nrfC cytochr 43.8 16 0.00034 30.5 1.9 60 142-207 121-187 (225)
139 PRK08764 ferredoxin; Provision 41.5 9.8 0.00021 29.1 0.3 53 142-201 81-134 (135)
140 PF12798 Fer4_3: 4Fe-4S bindin 38.4 15 0.00032 17.2 0.5 8 191-198 8-15 (15)
141 PRK09130 NADH dehydrogenase su 37.5 40 0.00087 33.0 3.8 114 75-200 80-203 (687)
142 PRK08166 NADH dehydrogenase su 37.0 36 0.00078 34.0 3.5 115 75-201 84-208 (847)
143 KOG1885 Lysyl-tRNA synthetase 36.9 22 0.00048 33.1 1.8 42 105-149 474-516 (560)
144 PRK07118 ferredoxin; Validated 36.9 29 0.00063 30.0 2.5 56 144-207 211-267 (280)
145 PF12434 Malate_DH: Malate deh 36.3 44 0.00096 18.4 2.2 17 75-91 10-26 (28)
146 COG2879 Uncharacterized small 36.2 85 0.0018 21.0 4.0 27 81-109 27-53 (65)
147 COG1145 NapF Ferredoxin [Energ 36.0 22 0.00049 24.6 1.4 61 142-207 25-88 (99)
148 PRK06273 ferredoxin; Provision 35.4 10 0.00022 30.2 -0.5 20 142-164 45-64 (165)
149 cd01388 SOX-TCF_HMG-box SOX-TC 34.4 1.1E+02 0.0024 20.2 4.6 41 80-125 14-54 (72)
150 PRK07860 NADH dehydrogenase su 34.1 16 0.00034 36.3 0.5 115 75-200 84-208 (797)
151 cd00084 HMG-box High Mobility 34.1 1.2E+02 0.0026 18.9 4.7 42 79-125 12-53 (66)
152 PF13484 Fer4_16: 4Fe-4S doubl 33.1 13 0.00028 24.2 -0.2 13 190-202 8-20 (67)
153 PF08447 PAS_3: PAS fold; Int 29.0 22 0.00048 23.8 0.4 29 61-93 6-35 (91)
154 PRK00783 DNA-directed RNA poly 28.7 24 0.00052 30.0 0.7 54 145-205 168-222 (263)
155 KOG3960 Myogenic helix-loop-he 27.5 44 0.00095 28.6 2.0 15 102-116 128-142 (284)
156 cd01390 HMGB-UBF_HMG-box HMGB- 27.3 1.7E+02 0.0036 18.4 4.7 40 81-125 14-53 (66)
157 COG1144 Pyruvate:ferredoxin ox 26.2 28 0.00062 24.9 0.6 56 140-204 29-88 (91)
158 PF00220 Hormone_4: Neurohypop 26.1 29 0.00063 14.2 0.4 7 191-197 3-9 (9)
159 PF07739 TipAS: TipAS antibiot 25.6 1.4E+02 0.003 21.3 4.3 48 68-124 51-99 (118)
160 PF12725 DUF3810: Protein of u 25.5 1.8E+02 0.004 25.5 5.7 57 61-117 82-149 (318)
161 cd01389 MATA_HMG-box MATA_HMG- 25.3 1.9E+02 0.0041 19.3 4.6 41 79-124 13-53 (77)
162 PF10041 DUF2277: Uncharacteri 24.8 2.4E+02 0.0053 19.5 6.2 53 63-116 5-61 (78)
163 TIGR02700 flavo_MJ0208 archaeo 23.6 23 0.0005 29.6 -0.4 55 142-204 144-199 (234)
164 PF12838 Fer4_7: 4Fe-4S diclus 22.6 28 0.0006 21.5 -0.1 15 191-205 9-23 (52)
165 TIGR03336 IOR_alpha indolepyru 22.2 58 0.0013 31.1 2.0 50 140-199 544-595 (595)
166 KOG2320 RAS effector RIN1 (con 20.7 95 0.0021 29.9 3.0 25 69-93 397-421 (651)
167 PF00505 HMG_box: HMG (high mo 20.6 2E+02 0.0044 18.2 3.9 40 79-123 12-51 (69)
168 COG1034 NuoG NADH dehydrogenas 20.3 38 0.00083 33.2 0.3 56 142-200 140-202 (693)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-26 Score=202.70 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=70.8
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 132 (216)
+..+|||+||||+++||.+|||+|||+||++||||+++.+++|+++|++|++||+||+||++|+.||++|..++.
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 356889999999999999999999999999999999998788999999999999999999999999999988765
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-24 Score=184.50 Aligned_cols=75 Identities=27% Similarity=0.436 Sum_probs=70.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
....+|||+||||+++|+.+|||+||||||++||||||++++.|.+.|++|+.||+||+||.+|+.||.+|..+.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999999999885544
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=9.7e-22 Score=175.27 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=66.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++||.+|||+|||+||++||||+++.+..++++|++|++||+||+|+.+|+.||++|..++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 68999999999999999999999999999999998666789999999999999999999999999986544
No 4
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-21 Score=163.87 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=79.9
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC------C
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID------P 130 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~------~ 130 (216)
.....++|+||||+++|+.++|||+||+|+++||||++++++++..+|++||+||+||+|+.+|..||.+|.- .
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~ 106 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ 106 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence 3447889999999999999999999999999999999999888999999999999999999999999998632 2
Q ss_pred C-----------CCcchhhhhhhhcccccccCCC
Q 027943 131 F-----------DYPECEALDVFVNEVLCVGKGC 153 (216)
Q Consensus 131 ~-----------~~~~~~~~~~fvde~~c~g~Gc 153 (216)
| .++......+++|...|.+.+|
T Consensus 107 fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~ 140 (279)
T KOG0716|consen 107 FGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCL 140 (279)
T ss_pred hcccCcceEEEecchhhhHHhhhhhhhhcchhhh
Confidence 2 2344444556677766655333
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.5e-21 Score=172.73 Aligned_cols=71 Identities=28% Similarity=0.495 Sum_probs=65.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||+||+||.+|+.||++|..++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 4689999999999999999999999999999999874 5688999999999999999999999999886543
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-21 Score=165.98 Aligned_cols=69 Identities=36% Similarity=0.606 Sum_probs=64.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.+.+|+||||+++||.+|||+|||+|+++||||||++ +.++|++|.+||+||+||++|++||++|.++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 4579999999999999999999999999999999877 68999999999999999999999999986654
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6.3e-21 Score=170.22 Aligned_cols=71 Identities=31% Similarity=0.509 Sum_probs=66.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.+++++|++|++||+||+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 46899999999999999999999999999999999876678999999999999999999999999988654
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9e-21 Score=170.27 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=65.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
.+|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||++|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 478999999999999999999999999999999998766789999999999999999999999999864
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.7e-20 Score=166.06 Aligned_cols=71 Identities=27% Similarity=0.520 Sum_probs=65.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 46899999999999999999999999999999998754 567899999999999999999999999988654
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.81 E-value=3.4e-20 Score=167.53 Aligned_cols=71 Identities=24% Similarity=0.459 Sum_probs=64.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.+...+||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||++|..++
T Consensus 24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 3445789999999999999999999999999999999752 5899999999999999999999999886554
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.4e-20 Score=164.56 Aligned_cols=73 Identities=27% Similarity=0.517 Sum_probs=67.3
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
...|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||++|..++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 3468999999999999999999999999999999998766788999999999999999999999999886544
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.8e-20 Score=164.51 Aligned_cols=70 Identities=27% Similarity=0.519 Sum_probs=64.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++. .+++++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 4689999999999999999999999999999999874 567899999999999999999999999988654
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.8e-20 Score=165.36 Aligned_cols=72 Identities=31% Similarity=0.563 Sum_probs=66.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+|+.+|+.||.+|..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 368999999999999999999999999999999998766788999999999999999999999999886554
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.8e-20 Score=164.20 Aligned_cols=71 Identities=28% Similarity=0.551 Sum_probs=66.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++|+.+|||+|||+|+++||||+++.+..+.++|++|++||++|+|+.+|+.||++|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 68999999999999999999999999999999998766788999999999999999999999999886543
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.5e-20 Score=165.27 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=66.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+||.+|+.||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 368999999999999999999999999999999998766789999999999999999999999999886543
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.5e-20 Score=164.25 Aligned_cols=72 Identities=29% Similarity=0.467 Sum_probs=66.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.++||+|||+|+++||||+++.+.+++++|++|++||+||+||.+|+.||++|..++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 468999999999999999999999999999999998766788999999999999999999999999876543
No 17
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.4e-20 Score=163.47 Aligned_cols=71 Identities=27% Similarity=0.473 Sum_probs=65.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||++|+||.+|+.||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 4689999999999999999999999999999999875 5688999999999999999999999999886543
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.9e-20 Score=163.69 Aligned_cols=72 Identities=26% Similarity=0.520 Sum_probs=66.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh----hCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER----ECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~----~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||+ +|..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 468999999999999999999999999999999998766789999999999999999999999998 776554
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.7e-20 Score=163.31 Aligned_cols=71 Identities=24% Similarity=0.502 Sum_probs=65.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||++|+|+.+|+.||++|..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 5689999999999999999999999999999999875 5689999999999999999999999999886543
No 20
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.2e-19 Score=157.10 Aligned_cols=69 Identities=32% Similarity=0.552 Sum_probs=64.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
..|||+||||+++||.+|||+|||+|+++||||++++ ..++++|++|++||++|+|+.+|+.||++|..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4689999999999999999999999999999999874 56889999999999999999999999998764
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=163.08 Aligned_cols=71 Identities=31% Similarity=0.511 Sum_probs=66.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++|+.++||+|||+|+++||||+++++..++++|++|++||++|+|+.+|+.||++|..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 37999999999999999999999999999999998767789999999999999999999999999886543
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=161.92 Aligned_cols=72 Identities=28% Similarity=0.521 Sum_probs=66.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+|+.+|+.||++|..++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 468999999999999999999999999999999998666688999999999999999999999999886544
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=162.06 Aligned_cols=71 Identities=28% Similarity=0.512 Sum_probs=65.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 3689999999999999999999999999999999875 5678999999999999999999999999886544
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.6e-19 Score=161.86 Aligned_cols=71 Identities=27% Similarity=0.573 Sum_probs=65.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 3689999999999999999999999999999999876 5678999999999999999999999999886654
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.9e-19 Score=160.96 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=64.9
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..+||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 3689999999999999999999999999999999875 568899999999999999999999999988654
No 26
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.79 E-value=2.4e-19 Score=121.15 Aligned_cols=63 Identities=40% Similarity=0.665 Sum_probs=59.2
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
|||+||||+++++.++||++|+++++++|||++.... .+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999987754 57799999999999999999999998
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.9e-19 Score=162.03 Aligned_cols=71 Identities=27% Similarity=0.480 Sum_probs=66.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+|+.+|+.||++|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 58999999999999999999999999999999998766788999999999999999999999999876543
No 28
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.5e-19 Score=160.34 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=63.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
.|||+||||+++|+.++||+|||+|+++||||++++ .+++++|++|++||+||+|+.+|+.||++|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 589999999999999999999999999999999874 56889999999999999999999999998753
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.7e-19 Score=156.54 Aligned_cols=71 Identities=28% Similarity=0.562 Sum_probs=65.6
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++|+.+|||+|||+|+++||||+++.+. .++++|++|++||++|+|+.+|+.||++|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 58999999999999999999999999999999987653 688999999999999999999999999886554
No 30
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-18 Score=150.56 Aligned_cols=73 Identities=33% Similarity=0.559 Sum_probs=66.8
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
.....|||+||||+++|+..|||+||++|+|+||||.+.++ ++.++|++|.+||++|+|+++|..||..+..+
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 33444899999999999999999999999999999999885 78999999999999999999999999987653
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.8e-19 Score=156.94 Aligned_cols=71 Identities=25% Similarity=0.485 Sum_probs=66.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.+++++|++|++||++|+|+.+|+.||.+|..+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 46899999999999999999999999999999999877778999999999999999999999999987543
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.6e-19 Score=155.95 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=65.4
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
+...+.||+||||.++++..+||++||+||++|||||++.. .+++++|+.|+.||+|||||..|++||.+.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 45678899999999999999999999999999999998765 468999999999999999999999999864
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=155.46 Aligned_cols=70 Identities=34% Similarity=0.566 Sum_probs=64.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++||.+|||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||++|..++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 589999999999999999999999999999999874 5678999999999999999999999999876543
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.75 E-value=1.5e-18 Score=154.18 Aligned_cols=69 Identities=32% Similarity=0.564 Sum_probs=63.7
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
|||+||||+++|+.++||+|||+|+++||||+++ ...++++|++|++||++|+|+.+|..||++|..++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 6999999999999999999999999999999987 35678999999999999999999999999876544
No 35
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=2.7e-18 Score=164.07 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=69.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY 133 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~ 133 (216)
....++||+||||+++|+..+||+|||+||++||||+++.+ .+..+|+.|++||+||+||.+|+.||.+|..+...
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 34568999999999999999999999999999999999875 67889999999999999999999999999776543
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.74 E-value=3.3e-18 Score=149.18 Aligned_cols=68 Identities=29% Similarity=0.582 Sum_probs=63.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
..|||+||||+++++.++||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999765 4689999999999999999999999999763
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-18 Score=147.53 Aligned_cols=72 Identities=26% Similarity=0.454 Sum_probs=68.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
..|||.||||+.+++..+||+|||+.+++||||||++++.+.+.|+.|.+||+||+|+..|..||..+..+-
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 578999999999999999999999999999999999999999999999999999999999999999875543
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.5e-18 Score=152.65 Aligned_cols=69 Identities=30% Similarity=0.541 Sum_probs=64.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
.|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 479999999999999999999999999999999874 468899999999999999999999999988653
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-18 Score=152.01 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=68.0
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 132 (216)
.....+||.+|+|+++||.+|||+|||++++.|||||..++ ..|++.|++|.+||+||+||.+|++||.+|..|.+
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34556899999999999999999999999999999998754 34899999999999999999999999999876543
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.9e-18 Score=151.33 Aligned_cols=70 Identities=30% Similarity=0.505 Sum_probs=64.6
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 589999999999999999999999999999999875 4688999999999999999999999999886543
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.71 E-value=2.2e-17 Score=109.87 Aligned_cols=58 Identities=34% Similarity=0.602 Sum_probs=53.2
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCcHHHHHHHHHHHHHHhcCch
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILTEYS 118 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~f~~i~~Ay~~L~d~~ 118 (216)
.+||+||||+++++.++||++|+++++++|||++.. ...+.+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 369999999999999999999999999999999875 3457889999999999999985
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=4.9e-17 Score=106.22 Aligned_cols=55 Identities=40% Similarity=0.727 Sum_probs=51.0
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116 (216)
Q Consensus 62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 116 (216)
+||+||||+++++.++||++||+|++++|||+......+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999987644578999999999999986
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.8e-17 Score=131.82 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=67.4
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
.....|+|+||||+++++.+|||+|||+|.+++||||++..++.++.|..|++||+.|+|+..|+.|..+|..
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3456789999999999999999999999999999999988777888999999999999999999999999854
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.6e-17 Score=134.24 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=64.4
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~--~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
...++|+||||.++|+..+||+|||+|++++|||+++ ...++.+.|++|+.||.||+|.++|+.||..|.-
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 3458999999999999999999999999999999985 3346889999999999999999999999998743
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.66 E-value=1.6e-16 Score=124.64 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=60.6
Q ss_pred cchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 61 SSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 61 ~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..+|+||||+++| |..+||+|||++++++|||+++ .+++|++|++||++|+|+.+|..||.+|.+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----DEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 5689999999999 9999999999999999999953 3679999999999999999999999988554
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.64 E-value=4.3e-16 Score=146.27 Aligned_cols=71 Identities=28% Similarity=0.506 Sum_probs=65.6
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 132 (216)
.+||+||||+++|+.++||++||+|+++||||+++. ..+.++|++|++||++|+|+.+|..||.+|..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 579999999999999999999999999999999876 56788999999999999999999999999876654
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7e-16 Score=125.96 Aligned_cols=68 Identities=34% Similarity=0.537 Sum_probs=63.9
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEIIERE 126 (216)
Q Consensus 59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~yd~~ 126 (216)
...+||+||||+++++..+||++||+++++||||+++.... +.+.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45789999999999999999999999999999999988764 889999999999999999999999985
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.62 E-value=6.5e-16 Score=134.00 Aligned_cols=74 Identities=26% Similarity=0.445 Sum_probs=65.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
....+|||+||||.++|+..||.||||+++.+||||...+.. .++.+|.-|..|-+||+||++|+.||.. .+|.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG-eDPL 466 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG-EDPL 466 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC-CCCC
Confidence 345789999999999999999999999999999999988754 4788999999999999999999999974 3443
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=5.9e-15 Score=118.51 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=58.1
Q ss_pred chhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 62 ~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
+||+||||++. ++..+||++||+|++++|||+....+. +.+.+..||+||++|+||.+|..|+...
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 79999999995 788999999999999999999765432 4568899999999999999999998643
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=8.7e-15 Score=116.91 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=57.6
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+||+||||++. ++..+|+++||+|++++|||++....+ +...+..||+||++|+||.+|..|+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 479999999986 789999999999999999999864322 2345789999999999999999998764
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=1.8e-14 Score=115.69 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=60.2
Q ss_pred CccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 59 STSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 59 ~~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
...+||++|||++. .+..+|+++||+|++++|||++...+. +.+.+..||+||++|+||.+|..|+...
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 35689999999996 678999999999999999999876543 4567899999999999999999998654
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=2e-14 Score=115.81 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=57.6
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCcHHH-----HHHHHHHHHHHhcCchhHHHHHhh
Q 027943 61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDA-----LIRRIIQAYEILTEYSRLEIIERE 126 (216)
Q Consensus 61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~-----~f~~i~~Ay~~L~d~~~R~~yd~~ 126 (216)
.+||+||||++. ++..+|+++||+|++++|||++...+..++ .+..||+||++|+||.+|..|...
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 689999999985 689999999999999999999876554333 458999999999999999999864
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.49 E-value=5.2e-14 Score=105.27 Aligned_cols=55 Identities=29% Similarity=0.501 Sum_probs=49.8
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhc
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 115 (216)
.++..++|+||||+++++.++||++||+|++++|||+. ++.+.|++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg----Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG----GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHh
Confidence 56678999999999999999999999999999999984 24678999999999995
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.5e-14 Score=125.23 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=64.5
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+..|+|.+|||+.+++.++||+.||++|...||||+.. +.|++.|+.|+.||++|+|+++|..||.+.
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 347899999999999999999999999999999999984 678999999999999999999999999865
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.8e-13 Score=120.95 Aligned_cols=68 Identities=26% Similarity=0.434 Sum_probs=63.9
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERE 126 (216)
Q Consensus 59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~ 126 (216)
...+||.|||+.++++..+||++||++++.||||++..+ .+++.+|++|.+||.+|+|+.+|..||+.
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 467899999999999999999999999999999998876 67899999999999999999999999975
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=114.75 Aligned_cols=67 Identities=31% Similarity=0.513 Sum_probs=61.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+|.|+||||++.++..+|++|||+|+++||||++.+.+ ..+.|+.|..||++|.|...|..||-..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHhHHHHh
Confidence 467999999999999999999999999999999998754 4589999999999999999999998654
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.41 E-value=3.8e-13 Score=115.19 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=53.2
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------CcHHHHHHHHHHHHHHhcCc
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEILTEY 117 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~L~d~ 117 (216)
.+...++|+||||++++|.++||++||+|+++||||+.... ..++++|++|++||++|+..
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 35568999999999999999999999999999999997542 23678999999999999853
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.4e-13 Score=114.96 Aligned_cols=70 Identities=30% Similarity=0.512 Sum_probs=62.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
..++|+||||.++|+..+||+||++++++||||+++.. ..+..+|++|.+||++|+|+.+|..||.+|..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~ 72 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE 72 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence 46799999999999999999999999999999997765 23555899999999999999999999998853
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=6.6e-12 Score=100.89 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=58.0
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.|||++|||++. .+..+++++|++|.+++|||+....+. +.+....||+||.+|+||.+|+.|=...
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L 75 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL 75 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence 579999999985 899999999999999999999876553 3445678999999999999999996643
No 60
>PHA02624 large T antigen; Provisional
Probab=99.29 E-value=3.2e-12 Score=118.97 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=55.7
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 60 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
..++|+||||+++| +..+||+|||+++++||||+.+ ++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46799999999999 9999999999999999999943 378999999999999999999988
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.27 E-value=3.7e-12 Score=113.49 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=63.6
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
..-|+||||||+.+++..+||++||+|..|+||||.+.- .+-++.+++|++||..|+|...|+.|-.+|..
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 346899999999999999999999999999999997652 34678899999999999999999999998743
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.13 E-value=1.3e-10 Score=92.22 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 73 CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 73 as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+..+|+++||+|++++|||+....+. +...+..||+||++|+||.+|+.|....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 578899999999999999999755432 5678999999999999999999998764
No 63
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.00 E-value=2.4e-10 Score=77.42 Aligned_cols=57 Identities=32% Similarity=0.610 Sum_probs=47.7
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecC--------CCChhHHHHHHHhcCCCCCeEe
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~--------~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
+.+|+..|+|+| .|...+|.+|.++++ |.+.+... +.+....+++|++.||++||+|
T Consensus 1 V~vD~~~C~gcg---~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCG---LCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCcc---HHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 468999999988 999999999999876 66655532 3556788999999999999997
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.9e-10 Score=89.67 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=57.7
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHH
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLE 121 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~ 121 (216)
.-.-++|+||.|.|..+.++||+.||+|.+..|||||+++ .-+...|..+..||..|-|+..|.
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3456899999999999999999999999999999999987 457888999999999999998654
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.9e-10 Score=92.83 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=60.2
Q ss_pred ccchhhhhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 60 TSSAYAILGVEP---SCSAAELKAAFRAKVKQYHPDVNRD--GRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 60 ~~~~y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
..|+|.+|||+. .++..+|+++.++.+.+||||+... +.+....|+.|+.||+||+|+.+|..||..-.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 368999999987 6888999999999999999999733 33578899999999999999999999998543
No 66
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=98.94 E-value=2.9e-10 Score=75.32 Aligned_cols=56 Identities=30% Similarity=0.603 Sum_probs=41.9
Q ss_pred hcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeEe
Q 027943 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 143 vde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~~ 201 (216)
||...|+++| .|...+|.+|.+++..|.+.+..++.. ....+++|++.||++||+|
T Consensus 1 VD~~~Ci~Cg---~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCG---LCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-S---HHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCC---hHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 5778999988 999999999999988888777777543 4567999999999999986
No 67
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=98.89 E-value=1.4e-09 Score=73.92 Aligned_cols=59 Identities=27% Similarity=0.540 Sum_probs=46.0
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceee------ecC-CCChhHHHHHHHhcCCCCCeEecC
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA------ISQ-GHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~------~~~-~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
+.+|+..|+|+| .|...+|.+|.+++. |.+.+ ... +.+....+++|++.||++||+|.+
T Consensus 3 v~vDrd~Cigcg---~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~ 68 (68)
T COG1141 3 VIVDRDTCIGCG---ACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE 68 (68)
T ss_pred EEechhhccccc---hhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence 468999999988 999999999999665 55422 111 234457799999999999999963
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.6e-08 Score=70.57 Aligned_cols=58 Identities=31% Similarity=0.360 Sum_probs=51.2
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY 117 (216)
Q Consensus 56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 117 (216)
..|+..+.-.||||+++++.+.||.++|+++...|||+.+. ...-.+||||+++|...
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEGT 108 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhcc
Confidence 46788899999999999999999999999999999999544 56667899999999754
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.9e-08 Score=93.05 Aligned_cols=58 Identities=29% Similarity=0.518 Sum_probs=49.4
Q ss_pred CCCCccchhhhhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943 56 TPPSTSSAYAILGVEPS----CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116 (216)
Q Consensus 56 ~~~~~~~~y~iLgv~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 116 (216)
..++..+.|+||.|+-+ ...++||++|+||+.+||||||+.. -++|.++|+||+.|..
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLSS 1337 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHHH
Confidence 35667889999999763 3558999999999999999998753 7899999999999983
No 70
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4e-07 Score=75.41 Aligned_cols=56 Identities=34% Similarity=0.528 Sum_probs=49.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHH-HhcC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYE-ILTE 116 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~-~L~d 116 (216)
...+|.||||..+++.++++.+|.+|++++|||...+. ...+.|.+|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-ADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-ccHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999997653 45789999999998 7764
No 71
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=98.19 E-value=1.3e-06 Score=58.88 Aligned_cols=59 Identities=25% Similarity=0.472 Sum_probs=49.6
Q ss_pred hhhhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 138 ~~~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
...+..|+..|.+.| .|+..+|.+|...+. |.. .+.....+.++.+++.||.+||.+++
T Consensus 5 ~i~V~~d~~~C~hag---~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 5 DITVTWDRERCIHAG---FCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred cEEEEECcCcccchh---hhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcEEee
Confidence 356788999999999 999999999999766 543 55566778999999999999999864
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.8e-05 Score=60.73 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=55.0
Q ss_pred CCccchhhhhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----CcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 58 PSTSSAYAILGVEP--SCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 58 ~~~~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
....+||.++|... ...+..++.-|....++.|||+.... ..+.+...++|+||.+|+||-+|+.|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34578999998754 56777778799999999999994432 2366778899999999999999999964
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00019 Score=57.73 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=45.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-------cHHHHHHHHHHHHHHh
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYEIL 114 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~f~~i~~Ay~~L 114 (216)
.+.|.+||+...+...+|+++|+++...+|||+....+ ...+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999955433 2566777888888754
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0006 Score=54.87 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=52.9
Q ss_pred hhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 63 AYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 63 ~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
++.++|+.+. ...+.++..|+.+.+.+|||+....+. +.+.+..++.||.+|.+|..|..|=....+|.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~ 78 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL 78 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence 4455565553 355678999999999999999876554 33477889999999999999999976555444
No 75
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.94 E-value=0.00099 Score=61.29 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCc-------HHHHHHHHHHHHHH
Q 027943 72 SCSAAELKAAFRAKVKQYHPDVNRDGRD-------SDALIRRIIQAYEI 113 (216)
Q Consensus 72 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~-------~~~~f~~i~~Ay~~ 113 (216)
-.+.++||++|||.++..||||.+..+. +++.|..+++||+.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999877642 44455555555554
No 76
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.78 E-value=0.003 Score=48.26 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchh
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~ 119 (216)
.|+......||||++..+.++|.+.|.+|....+|++ +++...=.+|..|.+.|..+.+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k----GGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSK----GGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCC----TS-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCc----CCCHHHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999999998 3446666689999999886553
No 77
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0025 Score=42.92 Aligned_cols=60 Identities=22% Similarity=0.540 Sum_probs=48.3
Q ss_pred hhhhhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 137 EALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 137 ~~~~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
+..+++++...|.-.| .|+.++|.+|... ..-=+.++..+.+.++--++.||.+||.++.
T Consensus 14 ekidi~fn~~iC~Hs~---nCV~Gn~~vF~~~----rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~~ 73 (74)
T COG3592 14 EKIDIYFNTAICAHSG---NCVRGNPKVFNLG----RKPWIMPDAVDVEEIVKVIDTCPSGALKYRR 73 (74)
T ss_pred ceEEEEeccceeeccc---ceecCCHhhcccC----CCCccCCCCCCHHHHHHHHHhCCchhhheec
Confidence 4467888889999888 8999999999873 3335556667778899999999999998763
No 78
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.23 E-value=0.34 Score=31.94 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=36.1
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY 117 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 117 (216)
++-.+.|++|||+++.+.+.|..+|+.... -.| .....+.+|..++.+.
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P----------~~~~~~r~AL~~Ia~~ 50 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-DDP----------SQKDTLREALRVIAES 50 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh----------HhHHHHHHHHHHHHHH
Confidence 345679999999999999999999999887 112 1234556677776643
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=89.12 E-value=0.91 Score=37.23 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943 70 EPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116 (216)
Q Consensus 70 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 116 (216)
+++|+.+||++|+.++..+|-- .++.-.+|-.||+.|.=
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g--------d~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG--------DEKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHH
Confidence 4789999999999999999822 24556789999987653
No 80
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=89.06 E-value=0.23 Score=34.43 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=35.3
Q ss_pred hhhcccccccCCCCCCCCCCCCC-ceeeeCCCCc--eee-ecCCCChhHHHHHHHhcCCCCCeEec
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGT--ARA-ISQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~--ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
++++...|.++| .|...+|. .|.+....+. ... .....+.-..-...++.||++||.|-
T Consensus 3 ~~~~~~~Ci~C~---~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 3 SVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred ceecCCcCcCcc---hHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEE
Confidence 345678899977 89998884 4665432221 111 11111222234689999999999973
No 81
>CHL00065 psaC photosystem I subunit VII
Probab=88.27 E-value=0.15 Score=35.38 Aligned_cols=59 Identities=14% Similarity=0.275 Sum_probs=34.5
Q ss_pred hhcccccccCCCCCCCCCCCC-CceeeeCCCC--ceee-ecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTG--TARA-ISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G--~ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
..+...|+++| .|...+| ..|.+.+..+ .... .....+.-..-...++.||++||.|..
T Consensus 5 ~~~~~~Ci~Cg---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 5 VKIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred cCccccCCChh---HHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 34567899977 8998888 4455543221 1011 111111112235789999999999864
No 82
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=0.72 Score=40.62 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----CCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 73 CSAAELKAAFRAKVKQYHPDVNRD----GRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 73 as~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
++..+|..+|+..++..||++... .....+.++.|.+||++|++..+|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 567889999999999999999642 12356779999999999998655444443
No 83
>PLN00071 photosystem I subunit VII; Provisional
Probab=86.62 E-value=0.32 Score=33.67 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=34.8
Q ss_pred hhcccccccCCCCCCCCCCCC-CceeeeCCCC-ceeee--cCCCChhHHHHHHHhcCCCCCeEec
Q 027943 142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTG-TARAI--SQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G-~ar~~--~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
+++...|.++| .|...+| ..+.+....+ ..... ....+.-..-...++.||++||.+.
T Consensus 5 ~~~~~~C~~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 66 (81)
T PLN00071 5 VKIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred eEcCCcCcChh---HHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEe
Confidence 45677899977 8998888 4466543222 11111 1111222234589999999999974
No 84
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=85.40 E-value=2.1 Score=31.97 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCc----HHHHHHHHHHHHHHhcCc
Q 027943 71 PSCSAAELKAAFRAKVKQYHPDVNRDGRD----SDALIRRIIQAYEILTEY 117 (216)
Q Consensus 71 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~~----~~~~f~~i~~Ay~~L~d~ 117 (216)
+..+..++|.+.|.+-++.|||.....+. .++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567889999999999999998765542 234455666655655543
No 85
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=84.37 E-value=0.2 Score=31.83 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=26.1
Q ss_pred ccccCCCCCCCCCCCCCceeeeCCCCceeeecCCC---ChhHH--HHHHHhcCCCCCe
Q 027943 147 LCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGH---GQDYR--VQLAVGQCPRSCI 199 (216)
Q Consensus 147 ~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~---~~~~~--v~~Av~~CP~~ai 199 (216)
.|+|+| .|+...|...-.....+......... +.+.- -..-++.||++||
T Consensus 1 kCi~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCG---RCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTT---HHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcc---hHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 477866 78888887776555544433322211 11112 2258889999998
No 86
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=83.69 E-value=0.95 Score=33.84 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=37.7
Q ss_pred hhhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.+.+|+..|.++| .|...+|.. +.+....+. .... .+.-..-...++.||++||.+..-
T Consensus 36 ~i~i~~~~Ci~C~---~C~~~CP~~ai~~~~~~~~-~~i~--~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 36 KILYDVDKCVGCR---MCVTVCPAGVFVYLPEIRK-VALW--TGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred eEEECcccCcCcc---cHHHHCCccceEccccccc-eEec--CCcCcChhhhHHhCCcCcEEeccc
Confidence 4568889999977 899988863 333322121 1122 122233557899999999998863
No 87
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=83.48 E-value=0.37 Score=35.14 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=39.2
Q ss_pred hhhhhcccccccCCCCCCCCCCCCC-ceeeeCCCCc-----eeeecCCCChhHHHHHHHhcCCCCCeEecCCcc
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGT-----ARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~-----ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~ 206 (216)
..+.+|+..|.++| .|+..+|. .|.+...... ..... .+....-...+..||++||.+.....
T Consensus 9 ~~v~id~~~Ci~C~---~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~--~~~C~~C~~C~~~CP~~AI~~~~~~~ 77 (103)
T PRK09626 9 TPVWVDESRCKACD---ICVSVCPAGVLAMRIDPHAVLGKMIKVVH--PESCIGCRECELHCPDFAIYVADRKE 77 (103)
T ss_pred CCeEECcccccCCc---chhhhcChhhhccccccccccCceeeEeC--CccCCCcCcchhhCChhhEEEecccc
Confidence 34567899999977 89999887 5554322111 01111 11112245688999999999987533
No 88
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=83.41 E-value=1 Score=32.94 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=37.2
Q ss_pred hhhhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
+...+|+..|.++| .|+..+|.. |.+. ..+.. .... +.-..-...++.||++||.+...
T Consensus 44 ~~p~i~~~~Ci~C~---~C~~~CP~~ai~~~-~~~~~-~id~--~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 44 FMPVVDESKCVKCY---ICWKFCPEPAIYIK-EDGYV-AIDY--DYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eeEEECcccCcccc---chhhhCCHhheEec-CCCcE-EeCc--hhCcCcchhhhhcCcCcEEeccc
Confidence 34567889999977 899988764 3332 22221 2221 11112347899999999998764
No 89
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=83.13 E-value=1.9 Score=36.21 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943 75 AAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~ 151 (216)
..+.++....+.+..||-.... ++. -.++.+...|.+- . .|-.|. .+-...+.....+.+|+..|+++
T Consensus 81 ~~~~rk~~l~~ll~~h~~~C~~C~~~g~--C~Lq~~a~~~g~~-~--~~~~~~----~~~~~~d~s~~~i~~d~~kCi~C 151 (234)
T PRK07569 81 LQEYRRMIVELLFAEGNHVCAVCVANGN--CELQDLAIEVGMD-H--VRFPYL----FPRRPVDISHPRFGIDHNRCVLC 151 (234)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCCCC--cHHHHHHHHhCCC-C--cccCcc----cCCcccccCCCcEEeehhhCcCc
Confidence 4456677777888889985321 122 2355555554422 1 111110 00000011223456889999997
Q ss_pred CCCCCCCCCCCC-----ceeeeCCCCceeeecCC------CChhHHHHHHHhcCCCCCeEecCC
Q 027943 152 GCPYSCVKTAPN-----AFSYSSSTGTARAISQG------HGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 152 Gcp~~C~~~~p~-----~F~~~~~~G~ar~~~~~------~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
| .|+..++. .|.........++.... ...-..-..-++.||++||.+...
T Consensus 152 g---~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 152 T---RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred c---HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 7 89888874 22222211222222110 011122357899999999998865
No 90
>PRK02651 photosystem I subunit VII; Provisional
Probab=82.82 E-value=0.9 Score=31.29 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=31.7
Q ss_pred ccccccCCCCCCCCCCCC-CceeeeCCCC-ceeeecC--CCChhHHHHHHHhcCCCCCeEe
Q 027943 145 EVLCVGKGCPYSCVKTAP-NAFSYSSSTG-TARAISQ--GHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 145 e~~c~g~Gcp~~C~~~~p-~~F~~~~~~G-~ar~~~~--~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
...|+++| .|...+| ..|......+ ....... ....-..-...++.||++||.+
T Consensus 8 ~~~Ci~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 65 (81)
T PRK02651 8 YDTCIGCT---QCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 65 (81)
T ss_pred cccCCCcc---hHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEE
Confidence 57899977 8999888 4455533221 1111111 1111122358999999999995
No 91
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=80.99 E-value=2.4 Score=37.22 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceeeecCCCChhH--HHHHHHhcCCCCCeEecC
Q 027943 151 KGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY--RVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 151 ~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~--~v~~Av~~CP~~ai~~v~ 203 (216)
.|||..|+...-.-|++- .+..+.-+++. --..-++.||++||.|..
T Consensus 145 sGCPn~C~r~~~~Digiv------Gv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 145 SGCPNDCTRPQAHDIGIV------GVWKPKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred ecCCcccccccccceeEE------EeecCccCHHHhchhHhHHHhCCCCceeecc
Confidence 349999997666666652 33222222211 123778899999999986
No 92
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=80.75 E-value=0.65 Score=30.44 Aligned_cols=53 Identities=25% Similarity=0.507 Sum_probs=24.7
Q ss_pred hhcccccccCCCCCCCCCCCCC----ceeeeCCCCceeeecCCCChhHHHHHHHhcCCC-CCeEe
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN----AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPR-SCIHY 201 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~----~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~-~ai~~ 201 (216)
.+|+..|+|+| .|....|. .+.++.. +...+... .-.--..=+..||| +||+.
T Consensus 2 ~Id~~~Ci~Cg---~C~~~Cp~~~~~~i~~~~~-~~~~v~~~---~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCG---KCVRACPDGAIDAIEVDEG-KKVPVNPD---KCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----S---CCCHHCCCCS-S-ECCTTT-TSSECE-T---T--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChh---hHHhHcCccceeeEEecCC-eeEEeccc---cCcCcCcccccCCCccCCCC
Confidence 47899999988 89998884 3333222 22222221 10011133458998 99974
No 93
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=80.54 E-value=0.34 Score=38.66 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=41.2
Q ss_pred hhhhhcccccccCCCCCCCCCCCCCce-eeeCCCCceeeecCC----CChhHHHHHHHhcCCCCCeEecCCcchh
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPNAF-SYSSSTGTARAISQG----HGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~~F-~~~~~~G~ar~~~~~----~~~~~~v~~Av~~CP~~ai~~v~~~~~~ 208 (216)
..+.||+..|+|+| .|+..+|+.- .+.+..+.++...+- .+.+.. ..=|+.||++|+..|+...|.
T Consensus 75 ~~v~V~~ekCiGC~---~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~g-paCVe~CP~~AL~lv~~~~~~ 145 (165)
T COG1142 75 GAVQVDEEKCIGCK---LCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVG-PACVEACPTEALELVDEIVLE 145 (165)
T ss_pred CceEEchhhccCcc---hhhhcCCcceEEEEeecCcchhhhhhcccccCccCC-CceeeeCCHHHhhcccHHHhh
Confidence 35689999999977 9999999543 232221111122221 111111 467899999999999977644
No 94
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=5.8 Score=30.11 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchh
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~ 119 (216)
.++-...-+||+|+...+.++|.+.|..|-....+.|.+ +...-.++-.|-+-|..+.+
T Consensus 55 ~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGG----SFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 55 KITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG----SFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred cccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc----ceeehHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999987666532 22222345566666654433
No 95
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=75.98 E-value=0.81 Score=39.70 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=39.4
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCCCcee----eecC-CCChhHHHHHHHhcCCCCCeEecCCcchhhH
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTAR----AISQ-GHGQDYRVQLAVGQCPRSCIHYVTPSQRIIL 210 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar----~~~~-~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l 210 (216)
+.+|+..|+|++ .|...+|.. ..++...+.+. .... ..+ ....-++.||++||.|..+.++..+
T Consensus 119 V~id~dkCigC~---~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G---~~PaCv~aCP~gAi~fg~~~~~~~~ 188 (283)
T TIGR01582 119 VDFDHSKCIGCG---YCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVG---QEPACVKTCPTNAISFGFKEDMKER 188 (283)
T ss_pred EEEeHHHCCcch---HHHhhCCCCCcEEcCCCCChhhhcccccccccC---CCChHhCcccHhhEEECCHHHHHHH
Confidence 467889999976 888888764 44433322211 0000 001 0124579999999999998877544
No 96
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=74.88 E-value=1.9 Score=33.07 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=35.6
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
...+|...|.++| .|...+|...-.... +....+.. +....-...++.||++||.+..
T Consensus 53 ~p~~d~~~Ci~C~---~C~~~CP~~ai~~~~-~~~~~i~~--~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 53 KPVHNNEICINCF---NCWVYCPDAAILSRD-KKLKGVDY--SHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred eEEEehhHCcChh---hHHHhCCHhheEecC-CceEEeCc--CcCcChhHHHHHCCcCceEEEe
Confidence 3457889999977 899988865432222 22122221 1122245789999999987665
No 97
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=74.28 E-value=3 Score=33.97 Aligned_cols=60 Identities=23% Similarity=0.496 Sum_probs=36.7
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCc
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~ 205 (216)
-.++|+..|+++| .|+..+|..--.....+...+.. +.-..-..-++.||++||.+....
T Consensus 108 ~~~id~~~Ci~Cg---~Cv~aCp~~ai~~~~~~~~~v~~---~~C~~Cg~Cv~vCP~~AI~~~~~~ 167 (191)
T PRK05113 108 VAFIDEDNCIGCT---KCIQACPVDAIVGATKAMHTVIS---DLCTGCDLCVAPCPTDCIEMIPVA 167 (191)
T ss_pred eeEEeCCcCCCCC---hhhhhCCHhhhecccCCceeecC---CcCCchHHHHHHcCcCceEEeecc
Confidence 3578999999977 89998883221111112211211 122224578899999999998643
No 98
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=73.95 E-value=0.71 Score=24.27 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=15.4
Q ss_pred hhhhcccccccCCCCCCCCCCCC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAP 162 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p 162 (216)
.+++|..+|+|+| .|+..+|
T Consensus 2 ~~~iD~~rCiGC~---~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCG---ACEVACP 21 (22)
T ss_pred ceEEccccccCch---hHHHhhC
Confidence 4578999999977 7876554
No 99
>PRK13984 putative oxidoreductase; Provisional
Probab=73.59 E-value=1.8 Score=41.27 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=34.2
Q ss_pred hhcccccccCCCCCCCCCCCCCc-eeee------CCCCceeee-cCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNA-FSYS------SSTGTARAI-SQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~-F~~~------~~~G~ar~~-~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
.+|...|.+|| .|+..+|.. +.+. ...|..... .-..+........++.||++||.|..
T Consensus 41 ~~d~~~Ci~C~---~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 41 INDWEKCIGCG---TCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred ccChhhCcCcc---chhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecc
Confidence 46889999977 899999843 2221 111211000 00111122245789999999999864
No 100
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=71.95 E-value=2.3 Score=34.43 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=36.9
Q ss_pred hhhhcccccccCCCCCCCCCCCCCce---e--eeCCCCc--eeeecCCCChhHHHHHHHhcCCCCCeEecCCcchh
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAF---S--YSSSTGT--ARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F---~--~~~~~G~--ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~ 208 (216)
.+.++...|.++| .|+..+|..- . ....... ........+.-..-..-++.||++||.+...-++.
T Consensus 56 ~i~~~~~kCi~Cg---~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~ 128 (183)
T TIGR00403 56 RIHFEFDKCIACE---VCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128 (183)
T ss_pred eEEeCcccCcCcC---ChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecccccccc
Confidence 3556788999977 8998888742 1 1100000 00001111112223478899999999997754443
No 101
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=71.09 E-value=4.1 Score=31.24 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=40.6
Q ss_pred hhhcccccccCCCCC----CCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhhH
Q 027943 141 VFVNEVLCVGKGCPY----SCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIIL 210 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~----~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l 210 (216)
.++|+..|.| |.. .|+..+|.. +.++.....+..... +.-..-...+..||.+||.+....++..+
T Consensus 3 ~~v~~~~C~g--C~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~--~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDG--CKAGEKTACVYICPNDLMHLDTEIMKAYNIEP--DMCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccC--ccCCchhcCHhhcCccceEecCCCceeeecCc--hhCccHHHHHHhCCcCceEEECccccccc
Confidence 4688999998 521 688888863 344332112212222 22223458899999999999876665544
No 102
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=69.05 E-value=2.8 Score=37.20 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=35.4
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecC--CCCh--hHH-----HHHHHhcCCCCCeEecCCcch
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--GHGQ--DYR-----VQLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~--~~~~--~~~-----v~~Av~~CP~~ai~~v~~~~~ 207 (216)
+.+|+..|+|++ .|...+|...-............. .... ... .-.-++.||++||.+.++.++
T Consensus 138 V~id~dkCigCg---~Cv~aCP~gai~~~~~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el 210 (328)
T PRK10882 138 VHYDKDVCTGCR---YCMVACPFNVPKYDYNNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREEL 210 (328)
T ss_pred ccCCHHHcCccc---HHHHhCCccceeccccccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHH
Confidence 356888999966 898888855432111110000000 0000 001 123788999999999887654
No 103
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=68.63 E-value=3 Score=32.72 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=37.0
Q ss_pred hhhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHH-----HHHHhcCCCCCeEecCCcch
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRV-----QLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v-----~~Av~~CP~~ai~~v~~~~~ 207 (216)
+.+|...|.++| .|....|. .+.+....+.+. .=..-. ..+ -..++.||++||.|.+..++
T Consensus 90 ~~i~~~~C~~C~---~C~~aCP~~ai~~~~~~~~~~--kC~~C~-~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~ 156 (161)
T TIGR02951 90 VLVDQDKCIGCR---YCVWACPYGAPQYDPQQGVMG--KCDGCY-DRVEKGLRPACVDACPMRALDFGPIDEL 156 (161)
T ss_pred EEECHHhCCCch---HHHhhCCCCCcEEcCCCCccc--cCCCCH-HHHHCCCCCcchhhccccceEEecHHHH
Confidence 456778899966 78888885 344433332210 001111 111 26889999999999987654
No 104
>COG1146 Ferredoxin [Energy production and conversion]
Probab=68.29 E-value=7.5 Score=25.80 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=36.6
Q ss_pred hhcccccccCCCCCCCCCCCCCceeeeCC--CCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNAFSYSSS--TGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~F~~~~~--~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~ 206 (216)
.+|...|.|+| .|....|...-..+. .+...+.... .-..-..=+..||++||.......
T Consensus 4 ~Id~~~C~~c~---~C~~~CP~~~~~~~~~~~~~~~~~~~e--~C~~C~~C~~~CP~~aI~~~~~~~ 65 (68)
T COG1146 4 VIDYDKCIGCG---ICVEVCPAGVFDLGEDEGGKPVVARPE--ECIDCGLCELACPVGAIKVDILRP 65 (68)
T ss_pred EECchhcCCCC---hheeccChhhEEeccccCcceeEeccc--cCccchhhhhhCCcceEEEecccc
Confidence 46778899966 798888876544332 2343343332 112234556789999999766543
No 105
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=68.02 E-value=0.81 Score=33.30 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=31.1
Q ss_pred hhhhcccccccCCCCCCCCCCCCCcee-eeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeEecCC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFS-YSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~-~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.+.+|+..|+|+| .|....|..=- ++...+.+.-=.-=.+ ..-....=|+.||++||.+.++
T Consensus 34 ~V~id~~~CigC~---~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~r 98 (98)
T PF13247_consen 34 IVVIDEDKCIGCG---YCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGDR 98 (98)
T ss_dssp -EEE-TTTCCTHH---HHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE-
T ss_pred eEEechhhccCch---hhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEecC
Confidence 3568999999976 78887776643 3333343221111000 0001246788999999999764
No 106
>PRK09898 hypothetical protein; Provisional
Probab=67.88 E-value=5.4 Score=32.75 Aligned_cols=57 Identities=12% Similarity=0.318 Sum_probs=35.6
Q ss_pred hhhcccccccCCCCCCCCCCCCCce-eeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcch
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAF-SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F-~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~ 207 (216)
+.+|...|++++ .|...+|..- .++...+ ..+.-..-..-++.||++||.+++.+++
T Consensus 149 v~vd~~~CigC~---~C~~aCP~~ai~~~~~~~-------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~ 206 (208)
T PRK09898 149 ITVDHKRCIGCS---ACTTACPWMMATVNTESK-------KSSKCVLCGECANACPTGALKIIEWKDI 206 (208)
T ss_pred EEeccccCCCcC---cccccCCCCCCEecCCCC-------cCCcCcChHHHHHhCCcccEEEecHHHc
Confidence 457788899866 7888888642 2211111 0111112347899999999999987654
No 107
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=67.13 E-value=2.1 Score=29.99 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=17.9
Q ss_pred hhhhhcccccccCCCCCCCCCCCCCc
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPNA 164 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~~ 164 (216)
+.+.+|+..|.++| .|+...|..
T Consensus 14 ~~~~i~~~~Ci~C~---~Cv~~CP~~ 36 (91)
T TIGR02936 14 FVTSIDQEKCIGCG---RCYKVCGRD 36 (91)
T ss_pred eeEEECHhHCCCcc---hHHHHcChh
Confidence 45678899999977 899888743
No 108
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=66.88 E-value=3 Score=38.07 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.3
Q ss_pred HHHHHhcCCCCCeEecC
Q 027943 187 VQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 187 v~~Av~~CP~~ai~~v~ 203 (216)
+.+.++.||++||+|..
T Consensus 247 ~~~~v~~Cp~~ai~~~~ 263 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDG 263 (402)
T ss_pred chhHhhcCCccccccCC
Confidence 44678999999999976
No 109
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=66.59 E-value=2.4 Score=35.03 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=40.1
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCc-eeeecCCCCh---hHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGT-ARAISQGHGQ---DYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~-ar~~~~~~~~---~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
+-+|...|+|+| .|...+|..=.+.+...+ +..=. ..-+ .-..-.=|+.||++|+.|-+..++..
T Consensus 95 V~vd~d~CIGC~---yCi~ACPyga~~~~~~~~~~~KCt-~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 95 VLVDKDLCIGCG---YCIAACPYGAPQFNPDKGVVDKCT-FCVDRVAVGKLPACVEACPTGALIFGDIDDPKS 163 (203)
T ss_pred EEecCCcccCch---HHHhhCCCCCceeCcccCcccccC-cchhhHhcCCCCcccccCCcccccccchhhcch
Confidence 568999999977 898888877655444222 11000 0000 00222558899999999988777643
No 110
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=66.21 E-value=3.8 Score=32.45 Aligned_cols=57 Identities=19% Similarity=0.488 Sum_probs=35.0
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEec
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
-..+|+..|.++| .|...+|..--.....+. ..... +.-..-..-++.||++||.++
T Consensus 107 ~~~id~~~Ci~Cg---~C~~aCp~~ai~~~~~~~-~~i~~--~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIGCT---KCIQACPVDAIVGAAKAM-HTVIA--DECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCChh---HHHHhCCccceEecCCCc-eEeec--ccccChhHHHHhcCcCceEee
Confidence 3568899999976 899888843222122121 11111 111224578899999999986
No 111
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=65.11 E-value=5.3 Score=33.95 Aligned_cols=54 Identities=11% Similarity=0.307 Sum_probs=32.8
Q ss_pred cccccccCCCCCCCCCCCCCc--eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEec
Q 027943 144 NEVLCVGKGCPYSCVKTAPNA--FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 144 de~~c~g~Gcp~~C~~~~p~~--F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
|+..|.++| .|...+|.. .......+...... .++...-..-++.||.+||.+.
T Consensus 199 ~~~~C~~C~---~C~~vCP~~~vl~~~~~~~~~~~i~--~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCM---DCFNVCPEPQVLRMPLKKGGSTLVL--SGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcC---CccCcCCCCceeeccccCCCceEec--cccccchhHHHHhCCccccccc
Confidence 488999966 899999964 22211111111111 2233345678899999999874
No 112
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=64.36 E-value=7.5 Score=37.13 Aligned_cols=115 Identities=9% Similarity=0.051 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhccccccc
Q 027943 74 SAAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVG 150 (216)
Q Consensus 74 s~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g 150 (216)
...+.++.--++.+..||--.+. .++ =.++.+...|. .+.. |-..+. ..+...+ ....+..|..+|+-
T Consensus 76 ~~~~~r~~~~e~ll~~h~~dC~~C~~~g~--C~Lq~~~~~~g--~~~~-~~~~~~---~~~~~~~-~~p~i~~d~~rCI~ 146 (603)
T TIGR01973 76 KVKKAREGVMEFLLINHPLDCPICDQGGE--CDLQDQAVMYG--SDRS-RFREKK---RTVENKY-LGPLIKTEMTRCIH 146 (603)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCCCCCC--ChHHHHHHHhC--CCCC-CCCccc---ccCCCCC-CCCCeEecCCcCcc
Confidence 34456666677788889965321 122 12444433333 2221 111100 0111111 12345678999999
Q ss_pred CCCCCCCCCC-----CCCceeeeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeE
Q 027943 151 KGCPYSCVKT-----APNAFSYSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIH 200 (216)
Q Consensus 151 ~Gcp~~C~~~-----~p~~F~~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~ 200 (216)
|| +|+.. .-..+++.......++....+. +....=.-|+-|||+||.
T Consensus 147 C~---rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~ 200 (603)
T TIGR01973 147 CT---RCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALT 200 (603)
T ss_pred cc---HHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccccc
Confidence 87 88643 3456666555444444332221 112233778999999986
No 113
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=62.79 E-value=3.4 Score=33.19 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=38.0
Q ss_pred hhhhcccccccCCCCCCCCCCCCCc-eeeeCCCC-ceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTG-TARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G-~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
...+|...|.++| .|+..+|.. +.+....+ +........+.-..-..-++.||++||.+...-++++
T Consensus 32 ~p~~d~~~C~~C~---~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~ 100 (180)
T PRK12387 32 KPEYNPQQCIGCA---ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAV 100 (180)
T ss_pred ceEEChhhCcChh---HHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchhh
Confidence 3457889999976 899888853 44332211 1111111111111233677899999999876544443
No 114
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=61.69 E-value=7.7 Score=35.28 Aligned_cols=61 Identities=16% Similarity=0.359 Sum_probs=37.5
Q ss_pred hhhcccccccCCCCCCCCCCCCC----ceeeeCCCCceeeecCCCChhHHHHHHHhcCCC-CCeEecCCcc
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPN----AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPR-SCIHYVTPSQ 206 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~----~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~-~ai~~v~~~~ 206 (216)
..+|+..|.+|| .|...+|. .+.+..+........ .+....-...++.||+ +||++.....
T Consensus 337 ~~~~~~~C~~C~---~C~~~Cp~~~~~ai~~~~~~~~~~~i~--~~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 337 ARIDQDKCIGCG---RCYIACEDTSHQAIEWDEDGTRTPEVI--EEECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred EEECHHHCCCCC---cccccCCCcchhheeeccCCCceEEec--hhhCcccchHHhhCCCCCCEEEeccCC
Confidence 457889999977 89999985 444432211111111 1222234567889999 9999877543
No 115
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=60.48 E-value=2.2 Score=31.68 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=35.2
Q ss_pred cccccCCCCCCCCCCCC-CceeeeCCC---Ccee--eecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 146 VLCVGKGCPYSCVKTAP-NAFSYSSST---GTAR--AISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 146 ~~c~g~Gcp~~C~~~~p-~~F~~~~~~---G~ar--~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
..|.++| .|...+| ..+.+.... +... ......+.-..-...++.||.+||.+....+.+.
T Consensus 43 ~~Ci~C~---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~~ 109 (122)
T TIGR01971 43 EKCIGCT---LCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELAT 109 (122)
T ss_pred CcCcCcc---hhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeecc
Confidence 8899977 8999999 555543221 1100 0000111111234678899999999877655443
No 116
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=59.66 E-value=7 Score=30.81 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=31.3
Q ss_pred ccccCCCCCCCCCCCCCc-eeeeCC---CCcee--eecCCCChhHHHHHHHhcCCCCCeEecCCcc
Q 027943 147 LCVGKGCPYSCVKTAPNA-FSYSSS---TGTAR--AISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 147 ~c~g~Gcp~~C~~~~p~~-F~~~~~---~G~ar--~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~ 206 (216)
.|.+|| .|+..+|.. +.+... .|... ......+....-...++.||++||.+.....
T Consensus 59 ~Ci~C~---~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 121 (164)
T PRK05888 59 RCIACK---LCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFE 121 (164)
T ss_pred cCCccc---ChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcce
Confidence 999976 899988854 222211 11110 0001111112234678899999999876544
No 117
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=59.44 E-value=6.1 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=34.9
Q ss_pred hhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.+|+..|.+++ .|...+|.. +.... .+. .+... +.-..-...++.||.+||.++..
T Consensus 47 ~~d~~~Ci~C~---~C~~~CP~~ai~~~~-~~~-~~id~--~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09624 47 EFNRDKCVRCY---LCYIYCPEPAIYLDE-EGY-PVFDY--DYCKGCGICANECPTKAIEMVRE 103 (105)
T ss_pred EEChhHCcChh---hHHhhCCHhhEEecC-CCc-EEECc--hhCCCcCchhhhcCcCcEEEecc
Confidence 46888999966 899888854 44432 222 22222 11112336788999999998753
No 118
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=59.04 E-value=12 Score=36.84 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC---CCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhccccccc
Q 027943 74 SAAELKAAFRAKVKQYHPDVNR---DGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVG 150 (216)
Q Consensus 74 s~~~Ik~ayr~l~~~~HPDk~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g 150 (216)
...+.++.--++.+..||--.+ ..++ -.++.+...|.+- .. | |.... ......+ ....+..|..+|+-
T Consensus 78 ~~~~~r~~~l~~ll~~h~~~C~~c~~~g~--C~Lq~~a~~~g~~--~~-~--~~~~~-~~~~~~~-~~p~i~~d~~rCi~ 148 (776)
T PRK09129 78 KALKAQKSVMEFLLINHPLDCPICDQGGE--CQLQDLAVGYGRS--TS-R--YTEEK-RVVFDKD-LGPLISTEMTRCIH 148 (776)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCCCCC--CHHHHHHHHhCCC--CC-c--ccccc-ccCCccC-CCcceeeccccccc
Confidence 4456677777788888995432 1121 2345555555422 11 1 11100 0000111 12334568999999
Q ss_pred CCCCCCCCCC-----CCCceeeeCCCCceeeecC---CCChhHHHHHHHhcCCCCCeE
Q 027943 151 KGCPYSCVKT-----APNAFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIH 200 (216)
Q Consensus 151 ~Gcp~~C~~~-----~p~~F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~~ai~ 200 (216)
|| +|+.. .-..+++.......++... .-+.. ..-.-|+-|||+||.
T Consensus 149 C~---rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~-~cg~cv~~CP~GAl~ 202 (776)
T PRK09129 149 CT---RCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSE-LSGNMIDLCPVGALT 202 (776)
T ss_pred Cc---HHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCc-ccCCchhhCCccccc
Confidence 88 88753 3445555544433333322 11222 245778899999997
No 119
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=58.28 E-value=7.9 Score=33.78 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943 75 AAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~ 151 (216)
..+.++.--.|.+..||--.+. .+.. .++.+..-|.+ .+ .|-.++... ..... ....+.+|..+|+-|
T Consensus 147 v~~~Rk~vLElLLs~Hp~DC~~C~k~G~C--eLQdla~~~Gv-~~--~Rf~~~~~~---~~~~~-~~p~i~~D~nKCIlC 217 (297)
T PTZ00305 147 VRDAREGNVELILINHPNDCPICEQATNC--DLQNVSMNYGT-DI--PRYKEDKRA---VQDFY-FDPQTRVVLNRCIHC 217 (297)
T ss_pred HHHHHHHHHHHHHhcCCCcCCcccCcCCc--HHHHHHHHhCC-CC--ccCCccccc---ccccC-CCCceeecCCcCcCc
Confidence 4567777778888889986421 1221 24444433331 11 111111100 00000 112234778999998
Q ss_pred CCCCCCCCCC-----CCceeeeCCCCceeeecCCCCh--h-HHHHHHHhcCCCCCeEecCCcc
Q 027943 152 GCPYSCVKTA-----PNAFSYSSSTGTARAISQGHGQ--D-YRVQLAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 152 Gcp~~C~~~~-----p~~F~~~~~~G~ar~~~~~~~~--~-~~v~~Av~~CP~~ai~~v~~~~ 206 (216)
| +|+..+ -..+.+........+....+.. . .--...++.|||+||.--+..+
T Consensus 218 g---RCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~ 277 (297)
T PTZ00305 218 T---RCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADE 277 (297)
T ss_pred c---HHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCccc
Confidence 7 887543 3345554443333333222111 0 0012468999999998776544
No 120
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=57.60 E-value=2.8 Score=33.80 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=35.2
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCC-CceeeecCCCChhHHHHHHHhcCCCCCeEecCCcc
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSST-GTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~-G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~ 206 (216)
+.+|...|.++| .|+..+|.. +.+..+. .+.+...-..+.-..-...++.||++||.+...-+
T Consensus 33 ~~~d~~~Ci~Cg---~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 33 PDLMPSQCIACG---ACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred eEeChhhCcchh---HHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEecccee
Confidence 457889999977 898887753 2222111 11111111111111233678899999999876433
No 121
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=57.55 E-value=6.4 Score=20.74 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=4.9
Q ss_pred hcccccccCC
Q 027943 143 VNEVLCVGKG 152 (216)
Q Consensus 143 vde~~c~g~G 152 (216)
+|+..|.++|
T Consensus 3 id~~~C~~Cg 12 (24)
T PF00037_consen 3 IDPDKCIGCG 12 (24)
T ss_dssp EETTTSSS-T
T ss_pred EchHHCCCcc
Confidence 3555566644
No 122
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=57.39 E-value=10 Score=32.47 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=34.4
Q ss_pred hcccccccCCCCCCCCCCCCCceeeeC-CCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 143 VNEVLCVGKGCPYSCVKTAPNAFSYSS-STGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 143 vde~~c~g~Gcp~~C~~~~p~~F~~~~-~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.|+..|.+++ .|...+|..-.... ..+.........++...-..-++.||++||.+-.+
T Consensus 205 ~d~~~C~~C~---~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCM---DCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccC---CcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence 7889999966 89999986422110 11110000011122333557889999999997543
No 123
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=54.95 E-value=5.3 Score=31.72 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=36.2
Q ss_pred hhhcccccccCCCCCCCCCCCCCce---eeeC--CCCcee--eecCCCChhHHHHHHHhcCCCCCeEecCCcchh
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAF---SYSS--STGTAR--AISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F---~~~~--~~G~ar--~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~ 208 (216)
+.++...|.++| .|...+|... .... +.+... ......+.-......++.||++||.+...-+++
T Consensus 54 i~~~~~~Ci~Cg---~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~ 125 (167)
T CHL00014 54 IHFEFDKCIACE---VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 125 (167)
T ss_pred EEeccccCCCcC---cHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCccccc
Confidence 345778999977 8988888642 1110 000101 000011222234578999999999987654443
No 124
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=54.52 E-value=7.8 Score=17.79 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhc
Q 027943 103 LIRRIIQAYEILT 115 (216)
Q Consensus 103 ~f~~i~~Ay~~L~ 115 (216)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 125
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=54.19 E-value=10 Score=25.65 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=33.4
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
..++...|.+++ .|+...|...-.....+.. .... +.-..-...++.||.+||....
T Consensus 20 ~~i~~~~C~~C~---~C~~~Cp~~ai~~~~~~~~-~i~~--~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 20 PVVDKEKCIKCK---NCWLYCPEGAIQEDEGGFV-GIDY--DYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEcCCcCcChh---HHHhhcCccceEecCCCcE-EecC--ccCcCccchhhhCCccccEecc
Confidence 457788999866 8988888553221222221 2221 1111234678899999998654
No 126
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=52.95 E-value=13 Score=34.77 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=37.0
Q ss_pred hhcccccccCCCCCCCCCCCCCce------eeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNAF------SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~F------~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~ 205 (216)
-+|..+|...-|..-|...||.+= .+++..|.......-.-. .=.-+.-||.+||.+|.+.
T Consensus 7 vvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvIsE~lCiG---CGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 7 VVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIG---CGICVKKCPFDAISIVNLP 73 (591)
T ss_pred EeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCceeEhhhhcc---chhhhccCCcceEEEecCc
Confidence 477888888888778888887652 233333443221110000 1134678999999999844
No 127
>PRK06991 ferredoxin; Provisional
Probab=52.86 E-value=6.3 Score=33.97 Aligned_cols=58 Identities=22% Similarity=0.466 Sum_probs=35.1
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCc
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~ 205 (216)
+.+|+..|+++| .|+..+|.. +.+. ..+. ..+. ...-..-..-+..||++||.++...
T Consensus 80 ~~id~~~CigCg---~Cv~aCP~~AI~~~-~~~~-~~v~--~~~CigCg~Cv~vCP~~AI~~~~~~ 138 (270)
T PRK06991 80 AVIDEQLCIGCT---LCMQACPVDAIVGA-PKQM-HTVL--ADLCTGCDLCVPPCPVDCIDMVPVT 138 (270)
T ss_pred eEEccccCCCCc---HHHHhCCHhheecc-cccc-eeeC--HhhCCCchHHHhhCCcCCeEeecCc
Confidence 457889999977 899998832 2221 1111 1111 1111223467889999999988654
No 128
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.75 E-value=6 Score=38.15 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=36.6
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCCC---ceeeecC---CCChhHHHHHHHhcCCCCCeEecCCcchh
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTG---TARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G---~ar~~~~---~~~~~~~v~~Av~~CP~~ai~~v~~~~~~ 208 (216)
+.+|...|.+|+ .|...+|.. +.+..... ....... ...+......-++.||++||.++...++.
T Consensus 80 ~~id~~~C~~C~---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~ 151 (654)
T PRK12769 80 IQVNQQKCIGCK---SCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQALS 151 (654)
T ss_pred EEEecccccCcC---hhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHH
Confidence 467889999966 899988853 22221110 0011111 11110001256789999999999876554
No 129
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=52.66 E-value=64 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=25.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYH 90 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~H 90 (216)
++--+++|+.|.++..||+.|-++.++|..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 345678999999999999999988888873
No 130
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=51.62 E-value=9.8 Score=34.66 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=35.0
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEe
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
+..+|+..|.+|+ .|...+|...-.. .... .+... +........++.||++||.+
T Consensus 4 ~~~id~~~Ci~C~---~C~~~CP~~ai~~-~~~~-~~i~~--~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCN---TCEETCPIDAITH-DDRN-YVVKA--DVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCcc---chhhhCCcccEec-cCCc-eEeCc--ccCcCHHHHHhhcCccccee
Confidence 3467889999966 8999999643222 2222 22222 12233568999999999983
No 131
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=50.07 E-value=6.8 Score=34.16 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=33.6
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeee---CCC---Cc---eeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYS---SST---GT---ARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~---~~~---G~---ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
..+|+..|.+|+ .|...+|..--.. ... +. ..+.....+.......-++.||++||.++.
T Consensus 242 p~id~~~Ci~C~---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 242 PVIDHSKCIMCR---KCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred eEECcccCcCcc---cccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 456889999977 8999888652110 000 00 001111111122244678899999999864
No 132
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=49.87 E-value=2.2 Score=22.78 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=15.1
Q ss_pred hhcccccccCCCCCCCCCCCCC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN 163 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~ 163 (216)
.+|+..|.|+| .|....|.
T Consensus 3 ~id~~~C~~Cg---~C~~~Cp~ 21 (24)
T PF12837_consen 3 VIDPDKCIGCG---DCVRVCPE 21 (24)
T ss_pred EEChhhCcChh---HHHHhcch
Confidence 57889999977 88877774
No 133
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=49.64 E-value=9 Score=30.59 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHhcCCCCCeEecCCcchhhHHH
Q 027943 189 LAVGQCPRSCIHYVTPSQRIILEE 212 (216)
Q Consensus 189 ~Av~~CP~~ai~~v~~~~~~~l~~ 212 (216)
.-++.||++||.++++.++..++.
T Consensus 142 aCv~~CP~~Al~~~~~~~~~~~~~ 165 (181)
T PRK10330 142 ACMAACPTHALICVDRNKLEQLSA 165 (181)
T ss_pred cchhhCchhhEEEeCHHHHHHHHH
Confidence 578999999999999887766543
No 134
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=48.57 E-value=6.9 Score=35.15 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=34.2
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeee-----CCCCceeeec-----CCCChhHHHHHHHhcCCCCCeEec
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYS-----SSTGTARAIS-----QGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~-----~~~G~ar~~~-----~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
+.+|+..|.+|| .|...+|...-.. ...+..++.. -..+....-..-+..||++||.+.
T Consensus 2 i~id~~kCi~Cg---~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCG---RCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcCh---HhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 357889999977 8999999664321 1111111110 001111123466788999999887
No 135
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=46.69 E-value=7 Score=33.52 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=34.3
Q ss_pred hhhhhcccccccCCCCCCCCCCCCCce---eeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPNAF---SYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~~F---~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
..+.+|+..|.+|| .|+..+|..= .+....+....... ..-..-..-+..||++||.+..
T Consensus 41 ~~~~~~~~~C~~C~---~C~~~Cp~~a~~~~~~~~~~~~~~~~~--~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 41 PELLFKENRCLGCG---KCVEVCPAGTARLSELADGRNRIIIRR--EKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred ceEEEccccCCCCc---hhhhhCcccccccccccCCCcceeech--hhcCchhHhhccCcHhHHhhhc
Confidence 45678999999977 8988887531 11111111111111 1112234678899999998853
No 136
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=46.10 E-value=18 Score=36.19 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccCC
Q 027943 76 AELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKG 152 (216)
Q Consensus 76 ~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~G 152 (216)
.+.++.--++.+..||--.+. .++ =.++.+...|.+ ++.+ -.+. +. ..+......+..|..+|+.||
T Consensus 78 ~~~Rk~vle~ll~~HpldC~~Cd~~ge--CeLQ~~a~~~gv--~~~~-~~~~----~~-~~~~~~~~~I~~D~~rCI~C~ 147 (819)
T PRK08493 78 MDERNAIMQTYDVNHPLECGVCDKSGE--CELQNFTHEMGV--NHQP-YAIK----DT-HKPHKHWGKINYDPSLCIVCE 147 (819)
T ss_pred HHHHHHHHHHHHhccCCCCCcCCCCCC--cHHHHHHHHhCC--CCCc-Cccc----cc-cccccCCCcEEechhhccccc
Confidence 456677777778889975431 122 234444444442 2221 1110 00 000101123668999999988
Q ss_pred CCCCCCCCCCCce
Q 027943 153 CPYSCVKTAPNAF 165 (216)
Q Consensus 153 cp~~C~~~~p~~F 165 (216)
+|+..++.+-
T Consensus 148 ---RCVr~C~ev~ 157 (819)
T PRK08493 148 ---RCVTVCKDKI 157 (819)
T ss_pred ---HHHhhCcccc
Confidence 9998888744
No 137
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=45.74 E-value=12 Score=35.93 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=37.0
Q ss_pred hhhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
+.+|+..|.++| .|...+|. .+.+... .+..-..-+.........++.||++||.+++..++..
T Consensus 80 v~~d~~~C~gC~---~C~~~CP~~ai~~~~~--~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~ 144 (639)
T PRK12809 80 VQLDEQKCIGCK---RCAIACPFGVVEMVDT--IAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQ 144 (639)
T ss_pred eecChhhCcchh---hHhhhcCCCCEEccCC--CcccccCCcccCCCCChhhhhCccceEEEechHHHHH
Confidence 457888999977 89999985 2333221 1100000000000113578899999999998765544
No 138
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=43.76 E-value=16 Score=30.49 Aligned_cols=60 Identities=17% Similarity=0.342 Sum_probs=34.2
Q ss_pred hhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhH--HH-----HHHHhcCCCCCeEecCCcch
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY--RV-----QLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~--~v-----~~Av~~CP~~ai~~v~~~~~ 207 (216)
.+|...|.++| .|...+|..--....... . ..--+.-. .+ -.=|+.||++||.|.+..++
T Consensus 121 ~id~~~C~~C~---~C~~aCP~~A~~~~~~~~--~-~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~ 187 (225)
T TIGR03149 121 DVHKDLCVGCQ---YCIAACPYRVRFIHPVTK--S-ADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDP 187 (225)
T ss_pred EechhhCCcch---HHHHhCCCCCcEecCCCC--c-cccCCCCCcchhhCCCCCcccccCccCCEEEeccccc
Confidence 46788899876 788877765432111110 0 00000000 01 25678899999999987763
No 139
>PRK08764 ferredoxin; Provisional
Probab=41.45 E-value=9.8 Score=29.06 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=30.2
Q ss_pred hhcccccccCCCCCCCCCCCCCceeeeCC-CCceeeecCCCChhHHHHHHHhcCCCCCeEe
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNAFSYSSS-TGTARAISQGHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~F~~~~~-~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
++++..|+++| .|+...|. ..+... .+. ..... +.-..-...++.||++||.|
T Consensus 81 ~~~~~~Ci~C~---~Cv~aCp~-~ai~~~~~~~-~~v~~--~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 81 WIVEADCIGCT---KCIQACPV-DAIVGGAKHM-HTVIA--PLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EECcccCcCcc---hHHHhCCh-hhcCccCCCc-eeecC--CcCcCccchhhhcCccceEe
Confidence 34567899966 89988883 222111 111 11111 11112346889999999986
No 140
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=38.36 E-value=15 Score=17.25 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=4.5
Q ss_pred HhcCCCCC
Q 027943 191 VGQCPRSC 198 (216)
Q Consensus 191 v~~CP~~a 198 (216)
++.||++|
T Consensus 8 ~~~Cp~~A 15 (15)
T PF12798_consen 8 VEVCPTGA 15 (15)
T ss_pred HHHhcCCC
Confidence 45566654
No 141
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=37.49 E-value=40 Score=32.95 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943 75 AAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~ 151 (216)
..+.++.--.+.+..||--.+. .++. ..+.+...|.+ +.. | |... ........ ...-+..|..+|+-|
T Consensus 80 v~~~r~~~le~ll~~Hp~dC~~C~~~g~C--~Lq~~~~~~g~--~~~-r--~~~~-~~~~~~~~-~~p~i~~~~~rCI~C 150 (687)
T PRK09130 80 VKKAREGVMEFLLINHPLDCPICDQGGEC--DLQDQAMAYGV--DTS-R--YHEN-KRAVEDKY-MGPLVKTVMTRCIHC 150 (687)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCC--HHHHHHHHhCC--CCC-C--CCcc-ccccCcCC-CCCcEEEecccCCcc
Confidence 3455666667778889986431 1222 24444444432 211 1 1100 00111111 122345778999997
Q ss_pred CCCCCCCCCC-----CCceeeeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeE
Q 027943 152 GCPYSCVKTA-----PNAFSYSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIH 200 (216)
Q Consensus 152 Gcp~~C~~~~-----p~~F~~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~ 200 (216)
+ +|+..+ -..+++......+.+....+. .....=.-|+-|||+||.
T Consensus 151 ~---rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~ 203 (687)
T PRK09130 151 T---RCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALT 203 (687)
T ss_pred c---HHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCcccc
Confidence 7 887543 334444444333333221111 111233778999999986
No 142
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=37.02 E-value=36 Score=34.00 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943 75 AAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~ 151 (216)
..+.++.--.+.+..||--.+- .++. .++.+...|. -...|-.+.. ..... +....-+..|..+|+-|
T Consensus 84 ~~~~r~~~~e~ll~~hp~dc~~c~~~g~c--~lq~~~~~~g---~~~~~~~~~~---~~~~~-~~~~~~i~~d~~rCi~C 154 (847)
T PRK08166 84 AKAFRASVVEWLMTNHPHDCPVCEEGGNC--HLQDMTVMTG---HSFRRYRFTK---RTHRN-QDLGPFISHEMNRCIAC 154 (847)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccCCCCCc--hHHHHHHHhC---CCCccCCCcC---ccccc-cCCCCceEecCCcCccc
Confidence 3567777778888899875431 2222 2444433333 1111111110 00000 11123356788999997
Q ss_pred CCCCCCCCCC-----CCceeeeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeEe
Q 027943 152 GCPYSCVKTA-----PNAFSYSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 152 Gcp~~C~~~~-----p~~F~~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~~ 201 (216)
| +|+..+ -..|++............... +....=.-|+-|||+||.-
T Consensus 155 ~---rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~ 208 (847)
T PRK08166 155 Y---RCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTD 208 (847)
T ss_pred c---HHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccc
Confidence 7 887543 334555433222222111111 1122346789999999863
No 143
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=36.93 E-value=22 Score=33.13 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCch-hHHHHHhhCCCCCCCcchhhhhhhhcccccc
Q 027943 105 RRIIQAYEILTEYS-RLEIIERECIDPFDYPECEALDVFVNEVLCV 149 (216)
Q Consensus 105 ~~i~~Ay~~L~d~~-~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~ 149 (216)
++|-+||+-|-||. +|..+.....+--.+++ ....+|+.+|-
T Consensus 474 kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDD---Ea~~~De~Fc~ 516 (560)
T KOG1885|consen 474 KEICNAYTELNDPVDQRQRFEQQARDKDAGDD---EAQMVDEDFCT 516 (560)
T ss_pred HHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCc---ccccccHHHHH
Confidence 47899999999995 56655544322111211 23345777665
No 144
>PRK07118 ferredoxin; Validated
Probab=36.90 E-value=29 Score=30.01 Aligned_cols=56 Identities=27% Similarity=0.486 Sum_probs=36.3
Q ss_pred cccccccCCCCCCCCCCCC-CceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcch
Q 027943 144 NEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 144 de~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~ 207 (216)
+...|++++ .|+..+| ..+.+.+ +.+.+...... .-...++.||++||.|......
T Consensus 211 ~~~~Ci~Cg---~Cv~~CP~~AI~~~~--~~~vId~~~C~---~Cg~C~~~CP~~AI~~~~~~~~ 267 (280)
T PRK07118 211 CEVGCIGCG---KCVKACPAGAITMEN--NLAVIDQEKCT---SCGKCVEKCPTKAIRILNKPPK 267 (280)
T ss_pred cccccccch---HHHhhCCcCcEEEeC--CcEEEcCCcCC---CHHHHHHhCCccccEeeccccc
Confidence 467799865 8999888 4555533 33333222211 1347899999999999876544
No 145
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=36.28 E-value=44 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 027943 75 AAELKAAFRAKVKQYHP 91 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HP 91 (216)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47789999999999983
No 146
>COG2879 Uncharacterized small protein [Function unknown]
Probab=36.22 E-value=85 Score=20.97 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Q 027943 81 AFRAKVKQYHPDVNRDGRDSDALIRRIIQ 109 (216)
Q Consensus 81 ayr~l~~~~HPDk~~~~~~~~~~f~~i~~ 109 (216)
.|-.-+++.|||+.+-. ..+.|++-++
T Consensus 27 nYVehmr~~hPd~p~mT--~~EFfrec~d 53 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT--YEEFFRECQD 53 (65)
T ss_pred HHHHHHHHhCcCCCccc--HHHHHHHHHH
Confidence 57778899999996542 3555554433
No 147
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=35.99 E-value=22 Score=24.56 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=34.2
Q ss_pred hhcccccccCCCCCCCCCCCCCce-eeeCCC--CceeeecCCCChhHHHHHHHhcCCCCCeEecCCcch
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNAF-SYSSST--GTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~F-~~~~~~--G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~ 207 (216)
-++...|+++| .|....|..- .+.... ....... .+.-..-..=+..||++||.++.....
T Consensus 25 ~~~~~~Ci~Cg---~C~~~CP~~ai~~~~~~~~~~~~~~~--~~~C~~C~~C~~~Cp~~a~~~~~~~~~ 88 (99)
T COG1145 25 VIDAEKCIGCG---LCVKVCPTGAIELIEEGLLLPEVVID--PDLCVLCGACLKVCPVDALSIAEELVN 88 (99)
T ss_pred EeCccccCCCC---CchhhCCHHHhhcccccCccceEEEc--cccCccccchHhhCCcCCeehhhcccc
Confidence 46677899977 8999999872 111110 0111111 111111225556899999988775543
No 148
>PRK06273 ferredoxin; Provisional
Probab=35.43 E-value=10 Score=30.23 Aligned_cols=20 Identities=40% Similarity=0.811 Sum_probs=15.7
Q ss_pred hhcccccccCCCCCCCCCCCCCc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNA 164 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~ 164 (216)
.+++..|.++| .|...+|..
T Consensus 45 ~id~~~CigCg---~C~~aCP~~ 64 (165)
T PRK06273 45 KVFEELCIGCG---GCANVCPTK 64 (165)
T ss_pred eECchhCcChh---HHHHhcCcc
Confidence 46788999977 788888853
No 149
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=34.40 E-value=1.1e+02 Score=20.22 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 80 AAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 80 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
+..|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666777899862 35677889999999998877655443
No 150
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=34.14 E-value=16 Score=36.28 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCC---CCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943 75 AAELKAAFRAKVKQYHPDVNR---DGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151 (216)
Q Consensus 75 ~~~Ik~ayr~l~~~~HPDk~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~ 151 (216)
..+.++.--++.+..||--.+ ..++. ..+.+...|.+= ..|-.+.. ..+..+......+..|..+|+-|
T Consensus 84 v~~~r~~~le~ll~~hp~dC~~C~~~g~C--~Lq~~~~~~g~~---~~~~~~~~---~~~~~~~~~~~~i~~d~~rCI~C 155 (797)
T PRK07860 84 ADKAQHGVMELLLINHPLDCPVCDKGGEC--PLQNQAMSNGRA---ESRFTDVK---RTFPKPINISTQVLLDRERCVLC 155 (797)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCc--HHHHHHHHhCCC---CccCcccc---ccCCCCCCCCcceeecccccccC
Confidence 355677777888888996532 11222 244444444421 11110000 00111100112456789999997
Q ss_pred CCCCCCCCCCC-----CceeeeCCCCceeeecCCCCh--hHHHHHHHhcCCCCCeE
Q 027943 152 GCPYSCVKTAP-----NAFSYSSSTGTARAISQGHGQ--DYRVQLAVGQCPRSCIH 200 (216)
Q Consensus 152 Gcp~~C~~~~p-----~~F~~~~~~G~ar~~~~~~~~--~~~v~~Av~~CP~~ai~ 200 (216)
+ +|+..+- ..+++........+....+.. ....=.-|+-|||+||.
T Consensus 156 ~---rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 156 A---RCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALT 208 (797)
T ss_pred c---HHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCccccc
Confidence 7 8875443 344454443333332221111 11123668899999996
No 151
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=34.12 E-value=1.2e+02 Score=18.95 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
.+.+++..+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566777778888842 35677889999999998766554443
No 152
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=33.05 E-value=13 Score=24.25 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=11.0
Q ss_pred HHhcCCCCCeEec
Q 027943 190 AVGQCPRSCIHYV 202 (216)
Q Consensus 190 Av~~CP~~ai~~v 202 (216)
=++.||++||.-.
T Consensus 8 C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 8 CAEACPTGAISGE 20 (67)
T ss_pred HHHhCcHhhccCC
Confidence 3678999999877
No 153
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=29.03 E-value=22 Score=23.84 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=20.6
Q ss_pred cchhhhhCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 027943 61 SSAYAILGVEPSCSAAEL-KAAFRAKVKQYHPDV 93 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~I-k~ayr~l~~~~HPDk 93 (216)
.+++++||+++ +++ +.....+....|||=
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 45899999954 566 566677788889986
No 154
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=28.68 E-value=24 Score=29.98 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=33.6
Q ss_pred ccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCc
Q 027943 145 EVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 145 e~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~ 205 (216)
...|.+++ .|...+|. .|.+++ +...+.... ........++.||.+||.+....
T Consensus 168 ~~~C~~C~---~C~~~CP~~vi~~~~--~~~~v~~~~--~C~~C~~Ci~~CP~~AI~i~~~~ 222 (263)
T PRK00783 168 SEDCDECE---KCVEACPRGVLELKE--GKLVVTDLL--NCSLCKLCERACPGKAIRVSDDE 222 (263)
T ss_pred cccCCchH---HHHHhCCccccEecC--CeEEEeChh--hCCCchHHHHhCCCCceEEEEcC
Confidence 57788855 78888887 677744 333333221 11123456677999999976644
No 155
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=27.53 E-value=44 Score=28.58 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcC
Q 027943 102 ALIRRIIQAYEILTE 116 (216)
Q Consensus 102 ~~f~~i~~Ay~~L~d 116 (216)
.+.++||||+|+|+.
T Consensus 128 RRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 468899999999973
No 156
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=27.29 E-value=1.7e+02 Score=18.44 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 81 AFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 81 ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555666788842 46778899999999997766554443
No 157
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=26.22 E-value=28 Score=24.93 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=34.3
Q ss_pred hhhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecC---CCChhHHHHHHHhcCCCCCeEecCC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
..-+|+..|+.+. .|...+|+. +...++...+.+--. +-+ .-++.||+.||..|..
T Consensus 29 rPv~d~~kCi~C~---~C~~yCPe~~i~~~~~~~~~~idYdyCKGCG------ICa~vCP~kaI~Mv~E 88 (91)
T COG1144 29 RPVVDEDKCINCK---LCWLYCPEPAILEEEGGYKVRIDYDYCKGCG------ICANVCPVKAIEMVRE 88 (91)
T ss_pred eeEEcccccccCc---eeEEECCchheeeccCCccceeEcccccCce------echhhCChhheEeEee
Confidence 3457889999955 888888877 444333222211111 222 4467899999998753
No 158
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=26.14 E-value=29 Score=14.15 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=4.1
Q ss_pred HhcCCCC
Q 027943 191 VGQCPRS 197 (216)
Q Consensus 191 v~~CP~~ 197 (216)
+..||.+
T Consensus 3 i~nCP~G 9 (9)
T PF00220_consen 3 IRNCPIG 9 (9)
T ss_pred cccCCCC
Confidence 4567764
No 159
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=25.63 E-value=1.4e+02 Score=21.34 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 68 GVEPSC-SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 68 gv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
|++|+. ...+|-+.++.+++.+++. ..+.+..|.+.| +.|+.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 566654 4556888888888877762 256788888888 78888888888
No 160
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.53 E-value=1.8e+02 Score=25.52 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=39.9
Q ss_pred cchhhhhCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC---CCcHHHHHHHHHHHHHHhcCc
Q 027943 61 SSAYAILGVEP-SCSAAELKAAFRAKVKQY-------HPDVNRD---GRDSDALIRRIIQAYEILTEY 117 (216)
Q Consensus 61 ~~~y~iLgv~~-~as~~~Ik~ayr~l~~~~-------HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~ 117 (216)
...++-||++. ..+.+|+++-.++++.+. ++|.... +....+.++++.+||+.|.+.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 45888999988 788888887777666543 3333211 123578899999999999854
No 161
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=25.27 E-value=1.9e+02 Score=19.28 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+...++
T Consensus 13 ~~~~r~~~~~~~p~~~-----~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGLT-----NNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4566778888899862 3567788999999999776654443
No 162
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.78 E-value=2.4e+02 Score=19.53 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=34.3
Q ss_pred hhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHH----HHHHHHHHhcC
Q 027943 63 AYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIR----RIIQAYEILTE 116 (216)
Q Consensus 63 ~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~----~i~~Ay~~L~d 116 (216)
--.+.|+.|.++.+||..|-.+.++|..=-..+.. ...+.|. .|..+-..|.+
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~-an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA-ANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999998754443332 1233443 45555444443
No 163
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=23.62 E-value=23 Score=29.60 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=33.5
Q ss_pred hhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.+|+..|.+|+ .|...+|.. +.+. .+.. .... +....-...++.||++||.....
T Consensus 144 ~id~~~C~~C~---~C~~~CP~~ai~~~--~~~~-~i~~--~~C~~Cg~C~~~CP~~AI~~~~~ 199 (234)
T TIGR02700 144 MIDRKRCKGCG---ICVDACPRSAIDMV--DGKA-FIRL--LKCVGCGKCKEACPYNAIHGGLE 199 (234)
T ss_pred EEChhHCcCcc---hHHHhCCcccEEec--CCce-EEch--hhCCccchHHhhCCCCceecCCc
Confidence 57788999966 899988853 3332 1222 1111 11112346789999999986643
No 164
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=22.59 E-value=28 Score=21.49 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.1
Q ss_pred HhcCCCCCeEecCCc
Q 027943 191 VGQCPRSCIHYVTPS 205 (216)
Q Consensus 191 v~~CP~~ai~~v~~~ 205 (216)
+..||+++|.+....
T Consensus 9 ~~~CP~~~i~~~~~~ 23 (52)
T PF12838_consen 9 VEACPTGAIRLDEEE 23 (52)
T ss_dssp HHH-TTHHCEEEETT
T ss_pred HHhcCccccCccccc
Confidence 567999999988753
No 165
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=22.19 E-value=58 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=31.9
Q ss_pred hhhhcccccccCCCCCCCCC--CCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCe
Q 027943 140 DVFVNEVLCVGKGCPYSCVK--TAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCI 199 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~--~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai 199 (216)
.+.+|+..|.+|| .|.. .+|. +... .+.. .... ....--..++.||.+||
T Consensus 544 ~~~id~~~C~~C~---~C~~~~~CP~-~~~~--~~~~-~i~~---~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 544 PYKVDQDKCIGCK---KCIKELGCPA-IEPE--DKEA-VIDP---LCTGCGVCAQICPFDAI 595 (595)
T ss_pred eEEEcCCcCCCcc---ccccccCCCC-cccc--CCcc-eeCC---CCcCHHHHHhhCccccC
Confidence 4678899999977 8998 8884 3322 2222 2222 12334577888999986
No 166
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.71 E-value=95 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCC
Q 027943 69 VEPSCSAAELKAAFRAKVKQYHPDV 93 (216)
Q Consensus 69 v~~~as~~~Ik~ayr~l~~~~HPDk 93 (216)
++..+..++||.+++++.+.|||.|
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChHH
Confidence 3445678889999999999999976
No 167
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=20.60 E-value=2e+02 Score=18.22 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.++...+..||+.. ..+..+.|.+.|.-|++..+....
T Consensus 12 ~~~~~~~~k~~~p~~~-----~~~i~~~~~~~W~~l~~~eK~~y~ 51 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-----NKEISKILAQMWKNLSEEEKAPYK 51 (69)
T ss_dssp HHHHHHHHHHHSTTST-----HHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----cccchhhHHHHHhcCCHHHHHHHH
Confidence 4455666677799874 467788899999999866654433
No 168
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=20.35 E-value=38 Score=33.20 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=30.8
Q ss_pred hhcccccccCCCCCCCCCCCCCc-----eeeeCCCCceeeecCCCChhH--HHHHHHhcCCCCCeE
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPNA-----FSYSSSTGTARAISQGHGQDY--RVQLAVGQCPRSCIH 200 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~~-----F~~~~~~G~ar~~~~~~~~~~--~v~~Av~~CP~~ai~ 200 (216)
..|..+|+-|+ +|+..+-++ +++........+...+..... -.=+-|+-|||+||.
T Consensus 140 ~~dm~RCI~C~---RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt 202 (693)
T COG1034 140 KYDMNRCILCT---RCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALT 202 (693)
T ss_pred hcccccceech---hhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccc
Confidence 37889999976 887543333 333333333233332222111 122568899999986
Done!