Query 027943
Match_columns 216
No_of_seqs 347 out of 2256
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 9.4E-23 3.2E-27 142.6 9.8 74 57-130 3-76 (79)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 2.7E-22 9.2E-27 141.3 8.8 74 58-131 6-80 (82)
3 2yua_A Williams-beuren syndrom 99.9 6.3E-22 2.1E-26 144.4 9.8 72 56-127 12-83 (99)
4 1hdj_A Human HSP40, HDJ-1; mol 99.9 4.9E-22 1.7E-26 138.4 8.2 70 61-131 3-72 (77)
5 2ctp_A DNAJ homolog subfamily 99.9 5.6E-22 1.9E-26 138.4 8.3 73 57-130 3-75 (78)
6 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.4E-21 8.1E-26 138.3 10.6 72 58-130 14-85 (88)
7 2och_A Hypothetical protein DN 99.9 1.3E-21 4.3E-26 135.0 8.5 68 58-128 5-72 (73)
8 2dmx_A DNAJ homolog subfamily 99.9 1.2E-21 4.1E-26 140.9 8.7 75 58-132 6-81 (92)
9 2ctq_A DNAJ homolog subfamily 99.9 8.7E-22 3E-26 146.7 7.8 76 58-133 17-92 (112)
10 2ctr_A DNAJ homolog subfamily 99.9 1.6E-21 5.5E-26 139.2 8.4 71 57-128 3-73 (88)
11 2ctw_A DNAJ homolog subfamily 99.9 2.2E-21 7.7E-26 143.8 9.3 73 57-129 13-85 (109)
12 1wjz_A 1700030A21RIK protein; 99.8 1.8E-21 6.1E-26 140.4 8.1 72 57-128 12-89 (94)
13 2o37_A Protein SIS1; HSP40, J- 99.8 5.5E-21 1.9E-25 137.5 8.6 67 58-127 5-71 (92)
14 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.1E-21 3.7E-26 144.1 4.6 73 60-132 2-74 (103)
15 2lgw_A DNAJ homolog subfamily 99.8 3.2E-21 1.1E-25 140.6 7.0 71 61-131 2-73 (99)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.9E-20 6.4E-25 138.8 4.4 73 58-130 12-88 (109)
17 2l6l_A DNAJ homolog subfamily 99.8 1.1E-19 3.6E-24 142.7 8.2 71 57-127 6-82 (155)
18 3apq_A DNAJ homolog subfamily 99.8 1.1E-19 3.9E-24 147.9 8.4 71 61-131 2-72 (210)
19 2ys8_A RAB-related GTP-binding 99.8 1.9E-19 6.6E-24 128.9 6.1 61 60-121 26-86 (90)
20 1faf_A Large T antigen; J doma 99.8 5.3E-19 1.8E-23 123.7 5.1 66 60-130 10-77 (79)
21 3bvo_A CO-chaperone protein HS 99.8 2.2E-18 7.6E-23 141.1 9.6 83 39-126 26-115 (207)
22 1iur_A KIAA0730 protein; DNAJ 99.7 7.9E-19 2.7E-23 125.2 4.6 65 56-120 11-76 (88)
23 3hho_A CO-chaperone protein HS 99.7 1.8E-18 6.1E-23 138.2 7.0 68 60-127 3-77 (174)
24 1gh6_A Large T antigen; tumor 99.7 9.6E-20 3.3E-24 135.9 -0.8 64 60-127 7-72 (114)
25 3lz8_A Putative chaperone DNAJ 99.7 2.4E-19 8.1E-24 156.4 0.0 70 57-127 24-93 (329)
26 1fpo_A HSC20, chaperone protei 99.7 4.5E-18 1.5E-22 135.5 6.8 66 62-127 2-74 (171)
27 2pf4_E Small T antigen; PP2A, 99.7 5.4E-19 1.9E-23 140.6 0.1 65 60-128 10-76 (174)
28 2guz_A Mitochondrial import in 99.7 5.2E-18 1.8E-22 116.2 4.6 60 57-120 10-70 (71)
29 1n4c_A Auxilin; four helix bun 99.7 4.9E-18 1.7E-22 135.9 2.2 63 61-123 117-182 (182)
30 2qwo_B Putative tyrosine-prote 99.7 1E-17 3.5E-22 120.0 2.7 56 61-116 33-91 (92)
31 3uo3_A J-type CO-chaperone JAC 99.7 3.9E-17 1.3E-21 131.1 4.2 66 59-127 9-81 (181)
32 3apo_A DNAJ homolog subfamily 99.6 2.4E-17 8.1E-22 157.6 1.6 75 57-131 17-91 (780)
33 3ag7_A Putative uncharacterize 99.6 3.8E-17 1.3E-21 120.3 2.2 57 61-118 41-104 (106)
34 2guz_B Mitochondrial import in 99.2 1.3E-11 4.4E-16 82.6 4.6 55 59-117 2-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.1 6.7E-11 2.3E-15 103.2 3.9 66 61-126 382-450 (450)
36 1dax_A Ferredoxin I; electron 97.6 2.3E-05 7.7E-10 50.9 1.9 61 140-203 3-63 (64)
37 1iqz_A Ferredoxin; iron-sulfer 97.5 3.8E-05 1.3E-09 52.5 2.6 61 140-204 3-71 (81)
38 1dwl_A Ferredoxin I; electron 97.1 0.00029 9.8E-09 44.4 2.6 57 141-202 2-59 (59)
39 1rof_A Ferredoxin; electron tr 96.9 0.00081 2.8E-08 42.4 3.6 58 141-203 3-60 (60)
40 1sj1_A Ferredoxin; thermostabi 96.7 0.0006 2.1E-08 43.9 2.1 60 140-203 3-65 (66)
41 1f2g_A Ferredoxin II; electron 96.5 0.0011 3.8E-08 41.7 2.0 57 141-202 2-58 (58)
42 1xer_A Ferredoxin; electron tr 93.2 0.013 4.4E-07 41.2 -0.5 62 139-203 36-102 (103)
43 2fgo_A Ferredoxin; allochromat 92.1 0.057 1.9E-06 36.2 1.7 58 142-205 2-64 (82)
44 1rgv_A Ferredoxin; electron tr 92.0 0.059 2E-06 35.9 1.7 59 142-205 2-64 (80)
45 1jb0_C Photosystem I iron-sulf 91.4 0.016 5.6E-07 38.5 -1.7 60 141-203 3-66 (80)
46 2zvs_A Uncharacterized ferredo 90.7 0.14 4.7E-06 34.6 2.5 60 142-206 2-66 (85)
47 2pzi_A Probable serine/threoni 89.9 0.15 5.3E-06 47.5 2.8 45 61-113 629-675 (681)
48 1bc6_A 7-Fe ferredoxin; electr 89.3 0.74 2.5E-05 30.1 5.2 68 142-215 2-70 (77)
49 3eun_A Ferredoxin; electron tr 86.5 0.45 1.5E-05 31.7 2.7 58 142-204 2-63 (82)
50 1h98_A Ferredoxin; electron tr 86.2 0.27 9.4E-06 32.4 1.5 64 142-213 2-68 (78)
51 1jnr_B Adenylylsulfate reducta 80.0 0.87 3E-05 34.4 2.2 67 141-209 3-72 (150)
52 2v2k_A Ferredoxin; iron, trans 76.9 0.22 7.5E-06 34.9 -1.9 62 142-209 2-64 (105)
53 3gyx_B Adenylylsulfate reducta 76.5 0.37 1.3E-05 37.1 -0.9 64 141-207 2-69 (166)
54 1kqf_B FDH-N beta S, formate d 74.5 0.59 2E-05 39.3 -0.2 64 141-208 126-193 (294)
55 3i9v_3 NADH-quinone oxidoreduc 70.8 1.2 4.1E-05 42.5 1.0 62 139-203 172-239 (783)
56 2vpz_B NRFC protein; oxidoredu 70.0 2.5 8.6E-05 33.2 2.6 57 141-205 83-146 (195)
57 3i9v_9 NADH-quinone oxidoreduc 60.8 1.1 3.8E-05 34.1 -1.2 16 189-204 103-118 (182)
58 1gte_A Dihydropyrimidine dehyd 60.0 0.95 3.2E-05 44.5 -2.1 59 140-205 945-1008(1025)
59 3c8y_A Iron hydrogenase 1; dit 55.8 0.82 2.8E-05 42.1 -3.2 63 139-204 138-210 (574)
60 2fdn_A Ferredoxin; electron tr 52.0 26 0.00088 20.5 4.4 49 145-201 5-54 (55)
61 3or1_B Sulfite reductase beta; 50.9 14 0.00046 32.2 4.0 49 150-202 186-239 (386)
62 1hfe_L Protein (Fe-only hydrog 50.3 2.1 7.3E-05 37.7 -1.3 55 140-201 27-83 (421)
63 1ti6_B Pyrogallol hydroxytrans 50.0 7.4 0.00025 32.2 2.1 60 141-207 92-162 (274)
64 3mm5_B Sulfite reductase, diss 47.1 23 0.0008 30.4 4.9 48 151-202 176-228 (366)
65 2ivf_B Ethylbenzene dehydrogen 41.8 9.5 0.00032 32.9 1.5 59 141-206 177-242 (352)
66 1qqr_A Streptokinase domain B; 38.9 12 0.00043 27.7 1.5 32 62-93 33-64 (138)
67 4a3n_A Transcription factor SO 32.5 74 0.0025 19.7 4.5 40 79-123 14-53 (71)
68 1ug2_A 2610100B20RIK gene prod 29.8 29 0.00098 24.0 2.1 23 72-94 67-89 (95)
69 2d7l_A WD repeat and HMG-box D 29.0 61 0.0021 21.3 3.7 45 79-127 17-61 (81)
70 1h0h_B Formate dehydrogenase ( 28.1 17 0.00059 28.7 0.9 61 141-208 101-170 (214)
71 2crj_A SWI/SNF-related matrix- 28.1 1.2E+02 0.0041 20.0 5.2 40 80-124 20-59 (92)
72 3f27_D Transcription factor SO 27.7 1.1E+02 0.0038 19.6 4.9 40 79-123 18-57 (83)
73 1ckt_A High mobility group 1 p 27.0 1.1E+02 0.0038 18.9 4.6 41 80-123 14-54 (71)
74 1i11_A Transcription factor SO 25.5 1.1E+02 0.0036 19.7 4.4 41 79-124 16-56 (81)
75 1wgf_A Upstream binding factor 25.4 1E+02 0.0035 20.3 4.4 50 60-125 24-73 (90)
76 2cs1_A PMS1 protein homolog 1; 24.7 99 0.0034 20.5 4.2 42 79-125 19-60 (92)
77 7fd1_A FD1, protein (7-Fe ferr 24.4 50 0.0017 22.3 2.7 57 142-204 2-59 (106)
78 2roh_A RTBP1, telomere binding 23.8 1.5E+02 0.0051 21.4 5.2 48 71-118 66-115 (122)
79 3nm9_A HMG-D, high mobility gr 23.3 1.4E+02 0.0049 18.6 5.0 38 79-124 15-52 (73)
80 1hme_A High mobility group pro 23.0 1.5E+02 0.0051 18.6 5.5 40 79-123 18-57 (77)
81 2eqz_A High mobility group pro 22.7 1E+02 0.0034 20.1 3.9 42 79-123 27-68 (86)
82 1hry_A Human SRY; DNA, DNA-bin 22.0 1.3E+02 0.0045 18.8 4.3 40 79-123 16-55 (76)
83 2e6o_A HMG box-containing prot 21.7 1.4E+02 0.0047 19.5 4.4 40 79-123 29-68 (87)
84 3u2b_C Transcription factor SO 20.9 1.5E+02 0.0052 18.7 4.5 40 79-123 14-53 (79)
85 1wz6_A HMG-box transcription f 20.5 1.5E+02 0.005 19.0 4.3 41 79-124 19-59 (82)
86 2juh_A Telomere binding protei 20.4 1.4E+02 0.0048 21.5 4.4 49 71-119 52-102 (121)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=9.4e-23 Score=142.64 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=68.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
.....+||+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||..|..+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 44567899999999999999999999999999999999876778999999999999999999999999988554
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=141.27 Aligned_cols=74 Identities=24% Similarity=0.500 Sum_probs=66.7
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
....+||+||||+++++.++||++||+|++++|||+++... .+.+.|++|++||++|+||.+|..||..|..+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 34578999999999999999999999999999999987642 467899999999999999999999999986654
No 3
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=144.36 Aligned_cols=72 Identities=29% Similarity=0.433 Sum_probs=67.1
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
..+...+||+||||+++++.++||++||+|+++||||+++....+.++|++|++||++|+|+.+|..||...
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 356678999999999999999999999999999999999876778999999999999999999999999865
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.86 E-value=4.9e-22 Score=138.38 Aligned_cols=70 Identities=29% Similarity=0.562 Sum_probs=64.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.+||+||||+++++.++||++||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||..|..++
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 579999999999999999999999999999999876 4578999999999999999999999999885443
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=138.42 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=66.2
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
.....+||+||||+++++.++||++||+|++++|||++.. ..+.+.|++|++||++|+||.+|..||..|..+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 3456789999999999999999999999999999999875 457899999999999999999999999988543
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=2.4e-21 Score=138.33 Aligned_cols=72 Identities=28% Similarity=0.492 Sum_probs=65.9
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
....+||+||||+++++.++||++||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||..|..+
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 346789999999999999999999999999999999876 457899999999999999999999999998543
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.86 E-value=1.3e-21 Score=134.97 Aligned_cols=68 Identities=35% Similarity=0.613 Sum_probs=61.7
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
....+||+||||+++++.++||++||+|++++|||+++.. .+.|++|++||++|+||.+|..||..|.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3457899999999999999999999999999999998653 6899999999999999999999999874
No 8
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=140.93 Aligned_cols=75 Identities=27% Similarity=0.571 Sum_probs=67.3
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 132 (216)
....+||+||||+++++.++||++||+|+++||||+++... .+.++|++|++||++|+||.+|..||..+..++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 34578999999999999999999999999999999987643 5788999999999999999999999999866544
No 9
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.7e-22 Score=146.72 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY 133 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~ 133 (216)
....+||+||||+++++.++||+|||+|++++|||+++.+..+.++|++|++||++|+||.+|..||..+..++..
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~ 92 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSM 92 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccCC
Confidence 4467899999999999999999999999999999999876788999999999999999999999999987665543
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=139.19 Aligned_cols=71 Identities=37% Similarity=0.530 Sum_probs=65.0
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
.....+||+||||+++++.++||++||+|++++|||+++. ..+.++|++|++||++|+||.+|..||..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3456789999999999999999999999999999999874 4678999999999999999999999999873
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.2e-21 Score=143.82 Aligned_cols=73 Identities=26% Similarity=0.449 Sum_probs=67.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID 129 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 129 (216)
.....++|+||||+++++.++||++||+|++++|||+++....+.++|++|++||++|+|+.+|..||..|..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 4456789999999999999999999999999999999987667889999999999999999999999998743
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.85 E-value=1.8e-21 Score=140.43 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=65.3
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG------RDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
.+...+||+||||+++++.++||+|||+|+++||||+++.. ..+.+.|++|++||++|+||.+|..||....
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 45678999999999999999999999999999999998743 3477899999999999999999999999864
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.5e-21 Score=137.53 Aligned_cols=67 Identities=31% Similarity=0.544 Sum_probs=62.3
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
....+||+||||+++++.++||++||+|++++|||+++.. .++|++|++||++|+||.+|..||.++
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 3567899999999999999999999999999999998654 679999999999999999999999987
No 14
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.84 E-value=1.1e-21 Score=144.07 Aligned_cols=73 Identities=27% Similarity=0.545 Sum_probs=67.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD 132 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 132 (216)
..+||+||||+++++.++||++||+|++++|||+++....+.++|++|++||++|+||.+|..||..+..++.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 3579999999999999999999999999999999987677899999999999999999999999999866544
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=140.60 Aligned_cols=71 Identities=35% Similarity=0.563 Sum_probs=63.5
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.+||+||||+++++.++||++||+|++++|||+++... .+.+.|++|++||++|+|+.+|..||..|..++
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~ 73 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL 73 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 57999999999999999999999999999999987653 478899999999999999999999999875443
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=1.9e-20 Score=138.75 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=65.4
Q ss_pred CCccchhhhhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 58 PSTSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 58 ~~~~~~y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
....+||+||||++++ +.++||+|||+|++++|||++++ ...+.+.|++|++||++|+||.+|+.||..+.++
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 3457899999999999 99999999999999999999875 2347889999999999999999999999988544
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=142.68 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc------HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD------SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+...+||+||||+++++.++||+|||+|++++||||++.... +.+.|++|++||++|+||.+|+.||..+
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4556899999999999999999999999999999999887542 5689999999999999999999999754
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=147.91 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=66.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.+||+||||+++++.++||+|||+|++++|||+++...++.++|++|++||++|+||.+|+.||..|..+.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 57999999999999999999999999999999998777889999999999999999999999999886543
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=128.94 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=56.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHH
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLE 121 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 121 (216)
..+||+||||+++++.++||++||+|+++||||+++. ..+.+.|++|++||++|+|+.+|.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCccccc
Confidence 4689999999999999999999999999999999876 457899999999999999998875
No 20
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.76 E-value=5.3e-19 Score=123.69 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=57.4
Q ss_pred ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943 60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130 (216)
Q Consensus 60 ~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 130 (216)
..++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+|+.+|.. +.+|..+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 4679999999999 999999999999999999999643 6899999999999999998876 3344433
No 21
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=141.12 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=69.0
Q ss_pred CCCcccccccccCCCCCCCCCccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHH
Q 027943 39 PSKFTVNCTERTGENASTPPSTSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAY 111 (216)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay 111 (216)
...|+..|..... +....+||+||||+++ ++.++||++||+|+++||||++++.+. +.+.|++|++||
T Consensus 26 ~~~fC~~c~~~q~-----~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 100 (207)
T 3bvo_A 26 DRFFCPQCRALQA-----PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100 (207)
T ss_dssp CCCBCTTTCCBCC-----CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCC-----CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567777775442 2345789999999986 799999999999999999999876543 456899999999
Q ss_pred HHhcCchhHHHHHhh
Q 027943 112 EILTEYSRLEIIERE 126 (216)
Q Consensus 112 ~~L~d~~~R~~yd~~ 126 (216)
+||+||.+|+.||..
T Consensus 101 ~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 101 KTLLAPLSRGLYLLK 115 (207)
T ss_dssp HHHHSHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHH
Confidence 999999999999964
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.74 E-value=7.9e-19 Score=125.16 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhH
Q 027943 56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRL 120 (216)
Q Consensus 56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R 120 (216)
.+....++|+||||+++++.++||+|||+|+++||||+++... .+.++|++|++||++|+|...|
T Consensus 11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566789999999999999999999999999999999987652 4789999999999999998766
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.74 E-value=1.8e-18 Score=138.20 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=61.5
Q ss_pred ccchhhhhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 60 ~~~~y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
..+||+||||+++++ ..+||++||+|+++||||++++.+. +.+.|+.|++||++|+||.+|..||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 467999999999887 9999999999999999999887654 5689999999999999999999999864
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=9.6e-20 Score=135.89 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=59.2
Q ss_pred ccchhhhhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 60 TSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
..++|+||||+++++. ++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||.+|
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 4689999999999998 999999999999999999765 468999999999999999999999765
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.73 E-value=2.4e-19 Score=156.42 Aligned_cols=70 Identities=30% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
.+...|||+||||+++|+.++||+|||+|+++||||+++.+ .++++|++|++||++|+||.+|+.||+++
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 45668999999999999999999999999999999998764 67899999999999999999999999974
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.72 E-value=4.5e-18 Score=135.51 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=60.7
Q ss_pred chhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 62 SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 62 ~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
+||+||||++++ +..+||++||+|+++||||++++.+. +.+.|+.|++||+||+||.+|..||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999998 99999999999999999999887543 4578999999999999999999999875
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.71 E-value=5.4e-19 Score=140.58 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=57.5
Q ss_pred ccchhhhhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943 60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI 128 (216)
Q Consensus 60 ~~~~y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 128 (216)
..++|+||||+++|+ .++||+|||+|++++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999765 3689999999999999999999999883
No 28
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.2e-18 Score=116.23 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCccchhhhhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhH
Q 027943 57 PPSTSSAYAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRL 120 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R 120 (216)
.++..++|+||||++ +++.++||++||+|++++|||+++ +.+.|++|++||++|+++..|
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g----~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG----SPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC----CHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHhhhhhc
Confidence 566789999999999 799999999999999999999953 367999999999999987655
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.68 E-value=4.9e-18 Score=135.92 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=58.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcCchhHHHH
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.++|+||||+++++.++||+|||+|++++||||++.... +.++|++|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999876543 788999999999999999999866
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.68 E-value=1e-17 Score=120.05 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=51.1
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcC
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTE 116 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d 116 (216)
.++|++|||++.++.++||+|||+++++|||||+++.+. ++++|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999876542 78899999999999975
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.66 E-value=3.9e-17 Score=131.10 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=59.1
Q ss_pred Cccchhhhh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 59 STSSAYAIL------GVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 59 ~~~~~y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
...+||+|| |+++ +++..+||++||+|++++|||+++. +.+.|++|++||++|+||.+|..||...
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 456899999 4655 8999999999999999999999875 4678999999999999999999999854
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.64 E-value=2.4e-17 Score=157.61 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943 57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF 131 (216)
Q Consensus 57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 131 (216)
.....+||+||||+++|+.++||+|||+|+++||||+++....+.++|++|++||++|+||.+|+.||++|..+.
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 345678999999999999999999999999999999997667788999999999999999999999999885543
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.64 E-value=3.8e-17 Score=120.30 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=50.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-------cHHHHHHHHHHHHHHhcCch
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYEILTEYS 118 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~f~~i~~Ay~~L~d~~ 118 (216)
.+||+|||++. |+.++||+|||+|+++|||||++..+ .++++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 67999999986 99999999999999999999986422 35789999999999999975
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.3e-11 Score=82.62 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=48.5
Q ss_pred CccchhhhhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943 59 STSSAYAILGVEPS---CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY 117 (216)
Q Consensus 59 ~~~~~y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 117 (216)
+..+.|.||||+++ ++.++|+++||+|+..+|||+. ++.....+|++|+++|...
T Consensus 2 t~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG----GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 2 TLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT----CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHHH
Confidence 44678999999999 9999999999999999999994 4477888999999999754
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.06 E-value=6.7e-11 Score=103.17 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=55.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CcHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943 61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERE 126 (216)
Q Consensus 61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~ 126 (216)
.++|++||+.+.++.++|+++|+++++++|||+.+.+ ..+.+.|++|++||++|+|+.+|..||++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 3799999999999999999999999999999998754 24778999999999999999999999973
No 36
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=97.59 E-value=2.3e-05 Score=50.90 Aligned_cols=61 Identities=28% Similarity=0.542 Sum_probs=44.6
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
.+.+|+..|.|+| .|+...|..|.+++..|.+.+.....+.-......++.||++||.+.+
T Consensus 3 ~~~id~~~C~~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 3 KFYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CCEECSTTCCSCC---HHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEEccccCCCch---HHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 3568889999987 899999999988654355444332223344567899999999999864
No 37
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=97.54 E-value=3.8e-05 Score=52.48 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=44.7
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecC--------CCChhHHHHHHHhcCCCCCeEecCC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~--------~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
.+.+|+..|.|+| .|+..+|..|.+++ .|.+.+... ..+.......+++.||++||++...
T Consensus 3 ~v~vd~~~CigCg---~C~~~CP~~~~~~~-~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccC---hhhHhCchheeeCC-CCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 3568999999988 89999999999853 355444321 1123345678999999999999764
No 38
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=97.07 E-value=0.00029 Score=44.39 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=39.4
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceee-ecCCCChhHHHHHHHhcCCCCCeEec
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA-ISQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
+.+|+..|.|+| .|....|..|.+....|...+ ... +.-......++.||++||.|.
T Consensus 2 i~i~~~~C~~C~---~C~~~Cp~~~~~~~~~~~~~~~~~~--~~c~~C~~C~~~CP~~Ai~~~ 59 (59)
T 1dwl_A 2 IVIDHEECIGCE---SCVELCPEVFAMIDGEEKAMVTAPD--STAECAQDAIDACPVEAISKE 59 (59)
T ss_dssp EEESSCCCSSCC---GGGGTSTTTEEEEECSSCEEESCTT--CCCGGGGTGGGGSTTCCEEEC
T ss_pred eEEChhhCcChh---HHHHHCCHHheecCCCCcEEEecCh--hhhhHHHHHHHhCCHhhEEcC
Confidence 356888999977 899999998887333444443 222 222234568899999999984
No 39
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.90 E-value=0.00081 Score=42.36 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=39.6
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
+.+|+..|.|+| .|+...|..|.++.. |...+.. ..+.-......++.||++||.+.+
T Consensus 3 ~~i~~~~C~~C~---~C~~~Cp~~~~~~~~-~~~~~~~-~~~~c~~C~~C~~~CP~~Ai~~~~ 60 (60)
T 1rof_A 3 VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQ-PETDLPCAKDAADSCPTGAISVEE 60 (60)
T ss_dssp SEECTTTCCSCC---SSTTTCTTTBCCCSS-SCCCBSC-SSCCSTTHHHHHHHCTTCCEECCC
T ss_pred EEEchhhCCCCh---HHHHhCcHHHeECCC-CCEeecC-chhhHHHHHHHHHhCCHhHEEEeC
Confidence 457888999977 899999988876433 4333332 112222345789999999999863
No 40
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=96.74 E-value=0.0006 Score=43.87 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=41.8
Q ss_pred hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCC-CC-h-hHHHHHHHhcCCCCCeEecC
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQG-HG-Q-DYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~-~~-~-~~~v~~Av~~CP~~ai~~v~ 203 (216)
.+.+|+..|.|+| .|+...|..|.+++ .|...+.... .+ . .......++.||++||.+.+
T Consensus 3 ~~~id~~~C~~C~---~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 3 KVSVDQDTCIGDA---ICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEEECTTTCCCCC---HHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECcccCcCch---HHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 3567889999977 89999999888853 3444443322 12 1 22356889999999999853
No 41
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=96.50 E-value=0.0011 Score=41.66 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=39.2
Q ss_pred hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEec
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v 202 (216)
+.+| ..|.++| .|+...|..|.+++. |.........+.-......++.||++||.+.
T Consensus 2 v~id-~~C~~C~---~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 58 (58)
T 1f2g_A 2 IEVN-DDCMACE---ACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58 (58)
T ss_dssp CBCT-TTCCCCC---HHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCBCC
T ss_pred cEEC-CcCccch---HHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEEeC
Confidence 3567 8899977 899999998877433 4433433112223346788999999999863
No 42
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=93.20 E-value=0.013 Score=41.19 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=38.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeec--CCCChhHH--HHHHHhcCCCCCeEecC
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAIS--QGHGQDYR--VQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~--~~~~~~~~--v~~Av~~CP~~ai~~v~ 203 (216)
..+.+|...|.++| .|+..+| ..|.+.+..+...... ...+.+.- -...+..||++||.|..
T Consensus 36 ~~~~id~~~C~~Cg---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 102 (103)
T 1xer_A 36 TIVGVDFDLCIADG---SCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP 102 (103)
T ss_dssp SSEEEETTTCCCCC---HHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred ceEEEehhhCCChh---hHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence 34668899999977 8999998 6777654433211000 01111111 23678899999999864
No 43
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=92.12 E-value=0.057 Score=36.21 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=35.5
Q ss_pred hhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeecC-CCChh---HHHHHHHhcCCCCCeEecCCc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQ-GHGQD---YRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~-~~~~~---~~v~~Av~~CP~~ai~~v~~~ 205 (216)
+++...|.++| .|+..+| ..+.+.+. .. .... .-..- .....-++.||++||.+....
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~-~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (82)
T 2fgo_A 2 LKITDDCINCD---VCEPECPNGAISQGEE--IY-VIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDAN 64 (82)
T ss_dssp BCCCTTCCCCC---TTGGGCTTCCEEECSS--SE-EECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred ceeCCCCCChh---hHHHHCChhccCCCCC--eE-EEEchhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence 45778899977 8999999 56766432 21 2221 11100 000156889999999997644
No 44
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=92.04 E-value=0.059 Score=35.92 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=35.1
Q ss_pred hhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeecCCCChh---HHHHHHHhcCCCCCeEecCCc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQGHGQD---YRVQLAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~~~~~~---~~v~~Av~~CP~~ai~~v~~~ 205 (216)
++|...|.++| .|+..+| ..+.+.+. ........-..- .....-++.||++||.+....
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (80)
T 1rgv_A 2 LYINDDCTACD---ACVEECPNEAITPGDP--IYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDY 64 (80)
T ss_dssp BCCCSCCCCCC---TTTTTCTTCCEECCSS--SCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred eEeCCCCcChh---hHHHHcChhccCcCCC--eeEEcchhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence 45678899977 8999999 46666432 211111111100 001156789999999987643
No 45
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=91.45 E-value=0.016 Score=38.47 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=36.4
Q ss_pred hhhcccccccCCCCCCCCCCCC-CceeeeCCCCc-eeeecCCCChh--HHHHHHHhcCCCCCeEecC
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGT-ARAISQGHGQD--YRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~-ar~~~~~~~~~--~~v~~Av~~CP~~ai~~v~ 203 (216)
+.+|...|.++| .|...+| ..|.+....+. ........+.+ ..-...+..||++||.|..
T Consensus 3 ~~~~~~~C~~Cg---~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T 1jb0_C 3 TVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 66 (80)
T ss_dssp EEEEETTCCCCC---HHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEE
T ss_pred CcccCCcCcChh---HHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeee
Confidence 356778899977 8999888 67776543331 11110001111 1123678899999999864
No 46
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=90.75 E-value=0.14 Score=34.56 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecC---CCChhHHHHHHHhcCCC-CCeEecCCcc
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPR-SCIHYVTPSQ 206 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~-~ai~~v~~~~ 206 (216)
+++...|.++| .|+..+|. .+.+.+. ....... .-+.....-.-++.||+ +||.+.....
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~~~ 66 (85)
T 2zvs_A 2 LLITKKCINCD---MCEPECPNEAISMGDH--IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPAHV 66 (85)
T ss_dssp EEECTTCCCCC---TTTTTCTTCCEECCSS--SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTSCC
T ss_pred EEeCCcCcChh---HHHHHCchhccCcCCC--ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCCCC
Confidence 46778999977 89999994 5555322 1111111 00100000156789999 9999976533
No 47
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.92 E-value=0.15 Score=47.47 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=35.1
Q ss_pred cchhhhhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHH
Q 027943 61 SSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEI 113 (216)
Q Consensus 61 ~~~y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~ 113 (216)
.+||.|||++.+... .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 349999999766654 67999999999965433 5688888888876
No 48
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=89.34 E-value=0.74 Score=30.07 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhhHHHHhh
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l~~~~~ 215 (216)
++|...|.+++|. .|....|. .+.+.+ +........-.. -..-++.||++||.+.....-.+++.+++
T Consensus 2 ~i~~~~C~~c~C~-~C~~~Cp~~ai~~~~--~~~~~~~~~C~~---Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~ 70 (77)
T 1bc6_A 2 YVITEPCIGTKDA-SCVEVCPVDCIHEGE--DQYYIDPDVCID---CGACEAVCPVSAIYHEDFVPEEWKSYIQK 70 (77)
T ss_dssp EECCSTTTTCCCC-SSTTTCTTCCEEECS--SSEEECTTTCCS---CCSHHHHSGGGSSEETTTSCHHHHHHHHH
T ss_pred EEeCccCCCCCcc-hhHHhcccccEEeCC--CcEEECcccCcC---ccCCHhhcCccceEecCCCHHHHHHHHHH
Confidence 4678889983232 89999985 455532 222221111110 11356789999999987666666666543
No 49
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=86.45 E-value=0.45 Score=31.68 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=35.3
Q ss_pred hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecC---CCChhHHHHHHHhcCCCCCeEecCC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
++|...|.++| .|+..+|. .+.+.+ +...+... .-+.......-++.||++||.|...
T Consensus 2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~--~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCD---VCEPECPNGAISQGD--ETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCC---TTGGGCTTCCEEECS--SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCcc---chHHHCChhheEcCC--CceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 46788999977 89999996 555532 22222111 1110000115788999999999865
No 50
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=86.21 E-value=0.27 Score=32.40 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred hhccccccc--CCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhhHHHH
Q 027943 142 FVNEVLCVG--KGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEEL 213 (216)
Q Consensus 142 fvde~~c~g--~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l~~~ 213 (216)
++|...|.+ +| .|+...|. .+.+.+ +........-. .-..-+..||++||.+.....-.+++.+
T Consensus 2 ~i~~~~C~~c~C~---~C~~~CP~~ai~~~~--~~~~~~~~~C~---~C~~C~~~CP~~Ai~~~~~~~~~~~~~~ 68 (78)
T 1h98_A 2 HVICEPCIGVKDQ---SCVEVCPVECIYDGG--DQFYIHPEECI---DCGACVPACPVNAIYPEEDVPEQWKSYI 68 (78)
T ss_dssp EEECGGGTTTCCC---HHHHHCTTCCEEECS--SSEEECTTTCC---CCCTHHHHCTTCCEEEGGGCCGGGTHHH
T ss_pred EEEchhCCCCCcC---hhhhhcCccceEcCC--CEEEECcccCC---cHhHHHHhCCccceEecccChHHHHHHH
Confidence 467888998 55 78888885 566643 22222111111 0124677899999998765444444443
No 51
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=80.05 E-value=0.87 Score=34.35 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred hhhcccccccCC--CCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 141 VFVNEVLCVGKG--CPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 141 ~fvde~~c~g~G--cp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
+++|+..|.++| |-..|+..+|. .+.++...+.+...... .-..-..-+..||++||.+....+...
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~--~C~~Cg~Cv~~CP~~AI~~~~~~~~~~ 72 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPD--MCWECYSCVKMCPQGAIDVRGYVDYSP 72 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGG--GCCCCCHHHHHCTTCCEEECCCTTTCC
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcc--cCcCHhHHHHhCCccceEecCcchhhh
Confidence 467889999854 11147777774 56665443332222211 000112577899999999887655443
No 52
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=76.90 E-value=0.22 Score=34.86 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII 209 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~ 209 (216)
++|...|.+++|. .|+..+|. .+.+.+. . ...... .-..-..-+..||++||.+.....-.+
T Consensus 2 ~i~~~~C~~C~c~-~C~~~CP~~ai~~~~~--~-~~~~~~--~C~~Cg~C~~~CP~~Ai~~~~~~~~~~ 64 (105)
T 2v2k_A 2 YVIAEPCVDVKDK-ACIEECPVDCIYEGAR--M-LYIHPD--ECVDCGACEPVCPVEAIYYEDDVPDQW 64 (105)
T ss_dssp EEECGGGTTTCCC-HHHHHCTTCCEEECSS--C-EEECTT--TCCCCCCSGGGCTTCCEEEGGGCCGGG
T ss_pred EEecccCCCCCcC-hhhhhcCccccCcCCC--c-EEEeCC--cCcchhhHHHhCCccCEEecCCChHHH
Confidence 4677889987333 78888884 4555322 2 122211 000011356789999999876543333
No 53
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=76.48 E-value=0.37 Score=37.15 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=37.5
Q ss_pred hhhcccccccCC---CCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcch
Q 027943 141 VFVNEVLCVGKG---CPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 141 ~fvde~~c~g~G---cp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~ 207 (216)
+++|+..|.|+| ++ .|+..+|. .+.+....+.+...... .-..-..-+..||++||.+....+.
T Consensus 2 v~id~~~C~gC~~c~~~-~C~~~CP~~ai~~~~~~~~~~~~d~~--~C~~Cg~Cv~~CP~~Ai~~~~~~~~ 69 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKT-ACMYICPNDLMILDPEEMKAFNQEPE--ACWECYSCIKICPQGAITARPYADF 69 (166)
T ss_dssp EEECTTTCCCCCSSSCC-HHHHHCTTSCEEEETTTTEEEESCGG--GCCCCCHHHHHCSSCCEEECCCTTT
T ss_pred CEEcchhcCCCCCCCcc-hhHHhCCccccEEecCCceeEecCcc--cCcccChHhHhCCccceEEeccccc
Confidence 357889999955 11 47777775 45665443332222210 0001225788999999998876554
No 54
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=74.50 E-value=0.59 Score=39.34 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=39.5
Q ss_pred hhhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHH---HHHHHhcCCCCCeEecCCcchh
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYR---VQLAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~---v~~Av~~CP~~ai~~v~~~~~~ 208 (216)
+.+|+..|.|+| .|...+|. .+.++...+... .-...++... ....++.||++||.+.++.++.
T Consensus 126 v~id~~~CigCg---~C~~~CP~~ai~~~~~~~~~~-kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~~ 193 (294)
T 1kqf_B 126 VDFQSENCIGCG---YCIAGCPFNIPRLNKEDNRVY-KCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEML 193 (294)
T ss_dssp EEECGGGCCCCC---HHHHHCTTCCCEEETTTTEEE-CCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHH
T ss_pred eEeCcccCCCcc---hhhhcCCCCCcEecCCCCCee-eCCCccchhhcCccHHHHHhCCcCcEEEecHHHHH
Confidence 457889999977 89888885 555654433211 0001111100 1177899999999998876654
No 55
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=70.76 E-value=1.2 Score=42.53 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=34.9
Q ss_pred hhhhhcccccccCCCCCCCCCCCCC-----ceeeeCCCCceeeecCCC-ChhHHHHHHHhcCCCCCeEecC
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAPN-----AFSYSSSTGTARAISQGH-GQDYRVQLAVGQCPRSCIHYVT 203 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p~-----~F~~~~~~G~ar~~~~~~-~~~~~v~~Av~~CP~~ai~~v~ 203 (216)
..+.+|...|++|| .|+..++. .+.+........+..... ......-.-++.||++||....
T Consensus 172 p~i~~d~~~CI~C~---~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~ 239 (783)
T 3i9v_3 172 PFVILDRERCIHCK---RCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLT 239 (783)
T ss_dssp TTEEECTTTCCCCC---HHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGG
T ss_pred ccEEEchhhCCCcc---HHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceeccc
Confidence 34567899999987 88876633 444443322222221110 0111122468899999998654
No 56
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=69.95 E-value=2.5 Score=33.15 Aligned_cols=57 Identities=23% Similarity=0.420 Sum_probs=33.5
Q ss_pred hhhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeecCCCChh-HHHH-----HHHhcCCCCCeEecCCc
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQGHGQD-YRVQ-----LAVGQCPRSCIHYVTPS 205 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~~~~~~-~~v~-----~Av~~CP~~ai~~v~~~ 205 (216)
+.+|...|+|+| .|+..+| ..+.+....+ . . .-..- ..+. .-++.||++||.+.+..
T Consensus 83 ~~id~~~CigC~---~C~~~CP~~Ai~~~~~~~---~-~-kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 83 VLVDPKKCIACG---ACIAACPYDARYLHPAGY---V-S-KCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp EEECTTTCCCCC---HHHHHCTTCCCEECTTSS---E-E-CCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred eeecCCCCCCcC---hhHhhCCCCCeEECCCCC---C-c-cCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 456777888866 7777777 3455543332 1 1 11111 1111 47889999999997655
No 57
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=60.76 E-value=1.1 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.1
Q ss_pred HHHhcCCCCCeEecCC
Q 027943 189 LAVGQCPRSCIHYVTP 204 (216)
Q Consensus 189 ~Av~~CP~~ai~~v~~ 204 (216)
.-++.||++||.+...
T Consensus 103 ~C~~~CP~~Ai~~~~~ 118 (182)
T 3i9v_9 103 LCEEACPTGAIVLGYD 118 (182)
T ss_dssp HHHHHCSSSCEEECSC
T ss_pred ChhhhCCccceEecCc
Confidence 4678899999998753
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=59.96 E-value=0.95 Score=44.47 Aligned_cols=59 Identities=22% Similarity=0.501 Sum_probs=40.2
Q ss_pred hhhhcccccccCCCCCCCCCCCC----CceeeeCCCCceeeecCCCChhHHHHHHHhcCCC-CCeEecCCc
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAP----NAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPR-SCIHYVTPS 205 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p----~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~-~ai~~v~~~ 205 (216)
.+.+|+..|.+|| .|...+| ..+.+++..+.... .... .....-+..||+ +||.+....
T Consensus 945 ~~~id~~~C~~Cg---~C~~~CP~~~~~ai~~~~~~~~~~~-~~~C---~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 945 VAVIDEEMCINCG---KCYMTCNDSGYQAIQFDPETHLPTV-TDTC---TGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp EEEECTTTCCCCC---HHHHHHHHHSCSCEEECTTTCCEEE-CTTC---CCCCHHHHHCSSTTTEEEEECC
T ss_pred eEEEEcccCcccC---HHHHhcCccccCCEEEeCCCceEEe-CccC---CChhHHHhhCCCCCCEEEecCc
Confidence 3568899999977 8999999 67877654333222 2211 112356788999 999987643
No 59
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=55.77 E-value=0.82 Score=42.10 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=38.9
Q ss_pred hhhhhcccccccCCCCCCCCCCCC-----CceeeeCCCCceeeecC---CCChh--HHHHHHHhcCCCCCeEecCC
Q 027943 139 LDVFVNEVLCVGKGCPYSCVKTAP-----NAFSYSSSTGTARAISQ---GHGQD--YRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 139 ~~~fvde~~c~g~Gcp~~C~~~~p-----~~F~~~~~~G~ar~~~~---~~~~~--~~v~~Av~~CP~~ai~~v~~ 204 (216)
..+.+|+..|++|| .|+..+| ..+.+.......++... .-+.+ ...-.-+..||++||.+...
T Consensus 138 ~~i~~d~~kCi~Cg---~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~ 210 (574)
T 3c8y_A 138 KSLTVDRTKCLLCG---RCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH 210 (574)
T ss_dssp SSEEEEGGGCCCCC---HHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred CcceeCcccCcCCC---CccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCcccccc
Confidence 35678999999977 8999888 46666543222222110 00110 01235678899999999864
No 60
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=52.00 E-value=26 Score=20.51 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred ccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEe
Q 027943 145 EVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 145 e~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
...|.++| .|....|.. +.+.+ +.. ...... -..-..-++.||++||.+
T Consensus 5 ~~~C~~C~---~C~~~CP~~ai~~~~--~~~-~~~~~~--C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCG---ACEPECPVNAISSGD--DRY-VIDADT--CIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCC---TTGGGCTTCCEECCS--SSC-EECTTT--CCCCCHHHHTCTTCCEEE
T ss_pred cccCcChh---hHHHHCCccccCcCC--CEE-Eecccc--CcChhChHHHccccceec
Confidence 56798877 899988864 44432 221 222110 001125678999999986
No 61
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=50.91 E-value=14 Score=32.21 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=27.3
Q ss_pred cCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHH-----HHHHHhcCCCCCeEec
Q 027943 150 GKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYR-----VQLAVGQCPRSCIHYV 202 (216)
Q Consensus 150 g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~-----v~~Av~~CP~~ai~~v 202 (216)
-.|||-.|+...-.-+++- |..+. .+.-+.+.. +...+..||++||.|.
T Consensus 186 vsGCpn~C~~~~~~Dig~v---g~~r~-~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~ 239 (386)
T 3or1_B 186 LACCINMCGAVHCSDIGLV---GIHRK-PPMIDHENLAELCEIPLAVAACPTAAVKPI 239 (386)
T ss_dssp EESSTTCCSSGGGSSEEEE---EECCS-CCCCCTTTHHHHCCHHHHHHHCTTCCEEEE
T ss_pred eccCccccccccccccccc---ccccc-cceechhhhcccccchhhhhhCchhhcccc
Confidence 3468888886544444442 11111 111222211 3578999999999995
No 62
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=50.29 E-value=2.1 Score=37.73 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=33.4
Q ss_pred hhhhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeee-cCCCChhHHHHHHHhcCCCCCeEe
Q 027943 140 DVFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAI-SQGHGQDYRVQLAVGQCPRSCIHY 201 (216)
Q Consensus 140 ~~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~-~~~~~~~~~v~~Av~~CP~~ai~~ 201 (216)
.+.+|...|.+|| .|+..+|. .+.+. .|..... .. +.....-.-+..||++||.+
T Consensus 27 ~i~~d~~kCi~Cg---~C~~~CP~~ai~~~--~~~~~~i~~~--~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 27 FVQIDEAKCIGCD---TCSQYCPTAAIFGE--MGEPHSIPHI--EACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp SEEECTTTCCCCC---HHHHHCTTCCCBCC--TTSCCBCCCG--GGCCCCCTTGGGCTTCCEEE
T ss_pred eEEECcccCCCcc---HHHHhcCcCceecc--cccceeecCh--hhCCchhhHHHhhCcCCccc
Confidence 5678999999977 89988886 33322 2222211 11 00001124577899999998
No 63
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=50.02 E-value=7.4 Score=32.23 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=35.7
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChh-HHH---------HHHHhcCCCCCeEecCCcch
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQD-YRV---------QLAVGQCPRSCIHYVTPSQR 207 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~-~~v---------~~Av~~CP~~ai~~v~~~~~ 207 (216)
+.+|+..|+|+| .|...+|.. ..+....+.. . ....- ..+ ..=++.||++||.|....+-
T Consensus 92 v~id~~~CigC~---~C~~~CP~~Ai~~~~~~~~~---~-kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp 162 (274)
T 1ti6_B 92 VLIDPEKAKGKK---ELLDTCPYGVMYWNEEENVA---Q-KCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPE 162 (274)
T ss_dssp EEECTTTTTTCG---GGGGGCSSCCCEEETTTTEE---E-CCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHH
T ss_pred EEechhhccchH---HHHhhCccCCeEEEcccCcc---c-cCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcH
Confidence 467889999977 898888853 3333222211 1 01110 011 14577899999999987743
No 64
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=47.11 E-value=23 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHH-----HHHHHhcCCCCCeEec
Q 027943 151 KGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYR-----VQLAVGQCPRSCIHYV 202 (216)
Q Consensus 151 ~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~-----v~~Av~~CP~~ai~~v 202 (216)
.|||..|+...-.-+++- |..+. ...-+.+.. +...+..||++||.|.
T Consensus 176 sgC~~~C~~~~~~Dig~~---g~~r~-~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~ 228 (366)
T 3mm5_B 176 ACCANMCGAVHASDIAIV---GIHRT-PPIPNDEAIRKTCEIPSTVAACPTGALKPD 228 (366)
T ss_dssp ESSTTCSSSGGGSSEEEE---EECCS-CCCCCHHHHHHHCCHHHHHHTCTTCCEEEE
T ss_pred ccCccccccccccccccc---ccccc-ceEEcchhccccccccchhccCCccceEec
Confidence 358878886544444442 11111 112232222 2678899999999995
No 65
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=41.82 E-value=9.5 Score=32.89 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=31.0
Q ss_pred hhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChh-HHHH-----HHHhcCCCCCeEecCCcc
Q 027943 141 VFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQD-YRVQ-----LAVGQCPRSCIHYVTPSQ 206 (216)
Q Consensus 141 ~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~-~~v~-----~Av~~CP~~ai~~v~~~~ 206 (216)
+.+|...|.|+| .|+..+|.. +.+....+.+. ....- ..+. .=++.||++||.+.+..+
T Consensus 177 v~id~~kCigCg---~Cv~aCP~~Ai~~~~~~~~~~----kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 177 VLVDQERCKGHR---HCVEACPYKAIYFNPVSQTSE----KCILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp EEECTTTCCCCC---HHHHHCTTCCEEEETTTTEEE----ECCTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred EEechhhcCCch---HHHhhcCccceeccccccccc----ccCCCcchhhcCCCChHHHhcCccceeccccch
Confidence 345677787755 677766653 23322222110 01111 1111 456789999999977554
No 66
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=38.90 E-value=12 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.0
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 027943 62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDV 93 (216)
Q Consensus 62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 93 (216)
-++..|.|....+.++++++-..+..++||+-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 45788888899999999999999999999985
No 67
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=32.51 E-value=74 Score=19.69 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566777888888873 356788899999999877655433
No 68
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.84 E-value=29 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 027943 72 SCSAAELKAAFRAKVKQYHPDVN 94 (216)
Q Consensus 72 ~as~~~Ik~ayr~l~~~~HPDk~ 94 (216)
+-++.+|+.+|++|++.+|--..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999976553
No 69
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=61 Score=21.33 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC 127 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g 127 (216)
-+.+|..++.-||+.. ...+..+.|.+.|..|++.++....+...
T Consensus 17 ~~e~R~~ik~~~P~~~----~~~eisK~lge~Wk~ls~eeK~~y~~~A~ 61 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS----DEADIIKEGMIRFRVLSTEERKVWANKAK 61 (81)
T ss_dssp HHHHHHHHHHHCTTCC----SHHHHHHHHHHHHSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778888899973 24678889999999999777766555443
No 70
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=28.14 E-value=17 Score=28.66 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=35.4
Q ss_pred hhhcccccc--cCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChh-HHHH-----HHHhcCCCCCeEecCCcchh
Q 027943 141 VFVNEVLCV--GKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQD-YRVQ-----LAVGQCPRSCIHYVTPSQRI 208 (216)
Q Consensus 141 ~fvde~~c~--g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~-~~v~-----~Av~~CP~~ai~~v~~~~~~ 208 (216)
+.+|+..|. |+| .|+..+|.. +.+....+. .. .-..- ..+. .=++.||++||.+.+..++.
T Consensus 101 v~id~~~C~~~~C~---~C~~~CP~~Ai~~~~~~~~---~~-kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~ 170 (214)
T 1h0h_B 101 VLFTPKTKDLEDYE---SVISACPYDVPRKVAESNQ---MA-KCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEME 170 (214)
T ss_dssp EEECGGGGGCSCHH---HHHHHCTTCCCEECTTSSC---EE-CCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHH
T ss_pred EEEeHHHCcccccc---HHHHhcCCCCeEecCCCcc---cC-cCCCCcchhhcCCChhHHHhcCcccEEEccHHHHH
Confidence 457788898 865 788777753 334322221 11 11111 1111 45778999999999877654
No 71
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=28.07 E-value=1.2e+02 Score=20.04 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 80 AAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 80 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 20 NERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556777777899862 4677888999999999877655443
No 72
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=27.66 E-value=1.1e+02 Score=19.59 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAEKRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567778888899873 356788899999999976654433
No 73
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=27.02 E-value=1.1e+02 Score=18.89 Aligned_cols=41 Identities=12% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 80 AAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 80 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
+..|..++.-||+... ...+..+.|.+.|..|++.++....
T Consensus 14 ~~~r~~~~~~~p~~~~---~~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 14 QTCREEHKKKHPDASV---NFSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHCTTCCC---CHHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHHCCCCCC---cHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3455566777998632 1367788999999999987765443
No 74
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.54 E-value=1.1e+02 Score=19.69 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 3456667777788762 3667888999999999877655544
No 75
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.42 E-value=1e+02 Score=20.35 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=35.0
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
..+.|-++ .+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 24 P~say~lF-----------~~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 24 PVSAMFIF-----------SEEKRRQLQEERPELS-----ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp CCCHHHHH-----------HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHH-----------HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45566666 3456677777899852 46778899999999997766555443
No 76
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.69 E-value=99 Score=20.49 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER 125 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~ 125 (216)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-----LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC-----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3556667777899873 36778899999999997766554443
No 77
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=24.41 E-value=50 Score=22.34 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=32.3
Q ss_pred hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943 142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP 204 (216)
Q Consensus 142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~ 204 (216)
++|...|.++|- ..|...+|. .+.+.+ +...+....-- .-..-+..||++||.+...
T Consensus 2 ~~~~~~C~~C~~-~~C~~~CP~~ai~~~~--~~~~i~~~~C~---~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCKY-TDCVEVCPVDCFYEGP--NFLVIHPDECI---DCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTCC-CHHHHHCTTCCEEECS--SCEEECTTTCC---CCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCccC-cHHHHHcCccceEcCC--CcEEECcccCC---ChhhhHHhCCChhhhcccc
Confidence 567888998540 047777773 455532 22222111111 0124678999999999874
No 78
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=23.82 E-value=1.5e+02 Score=21.35 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHh--CCCCCCCCCcHHHHHHHHHHHHHHhcCch
Q 027943 71 PSCSAAELKAAFRAKVKQY--HPDVNRDGRDSDALIRRIIQAYEILTEYS 118 (216)
Q Consensus 71 ~~as~~~Ik~ayr~l~~~~--HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~ 118 (216)
++=|..+||..||.+.+.- .|+........++....|.+|...+++-.
T Consensus 66 ~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~~ 115 (122)
T 2roh_A 66 HHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDS 115 (122)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhhHH
Confidence 5678999999999999754 57765443334444567888888888654
No 79
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=23.35 E-value=1.4e+02 Score=18.61 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-----VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC-----HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCc---hHHHH
Confidence 4556777778899873 36778889999999987 55553
No 80
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=22.98 E-value=1.5e+02 Score=18.65 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 57 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-----IGDVAKKLGEMWNNTAADDKQPYE 57 (77)
T ss_dssp HHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHSCGGGSHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3456666777789852 467788999999999977665443
No 81
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.67 E-value=1e+02 Score=20.15 Aligned_cols=42 Identities=10% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
-+..|..++.-||+.... ..+..+.|.+.|..|++.++....
T Consensus 27 ~~~~r~~~k~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~ 68 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN---FAEFSKKCSERWKTMSGKEKSKFD 68 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC---HHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345566667779987421 367788999999999977654443
No 82
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.02 E-value=1.3e+02 Score=18.83 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....
T Consensus 16 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-----SHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHhHHHhCCHHHHHHHH
Confidence 35566777778998632 34678899999999866654433
No 83
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.67 E-value=1.4e+02 Score=19.53 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 29 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y~ 68 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-----NRAISVILGDRWKKMKNEERRMYT 68 (87)
T ss_dssp HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3556777777899862 356778899999999976654443
No 84
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=20.94 E-value=1.5e+02 Score=18.66 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y 123 (216)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~ 53 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-----NAEISKRLGKRWKLLKDSDKIPFI 53 (79)
T ss_dssp HHHHHHHHHTTSTTSC-----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566777777788763 356788899999999876654433
No 85
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.45 E-value=1.5e+02 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943 79 KAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIE 124 (216)
Q Consensus 79 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd 124 (216)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 35667777788998632 456788999999999766544433
No 86
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.43 E-value=1.4e+02 Score=21.45 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHH--HhCCCCCCCCCcHHHHHHHHHHHHHHhcCchh
Q 027943 71 PSCSAAELKAAFRAKVK--QYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119 (216)
Q Consensus 71 ~~as~~~Ik~ayr~l~~--~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~ 119 (216)
++=|..+||..||.+.+ ..-|+.....+...+....|.+|...+++-..
T Consensus 52 ~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~ 102 (121)
T 2juh_A 52 DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102 (121)
T ss_dssp SSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHccchh
Confidence 46688899999999987 34577655433345555678888888876543
Done!