BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027945
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXX 63
K+L L L+ F NPKV LEQY T + AS +L+ A S GD+ KVVAD
Sbjct: 6 KELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGVLS 64
Query: 64 XXXXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123
+VI +++D +++++ EN + + D+ R VD V+
Sbjct: 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR------VDIVIX 118
Query: 124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLH--KTSTREHVKKAALRDFNASSAEVLCEL 181
NPPFG+++K D FL A ++ S VYS+H K R ++K + + + ++
Sbjct: 119 NPPFGSQRKHADRPFLLKAFEI-SDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKI 177
Query: 182 RYDVPQLYKFHKKKEVDIAVDLWRF 206
++P + FH+KK I VD++RF
Sbjct: 178 --EIPLQFFFHRKKLERITVDIYRF 200
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXXXX 65
LE L L+Q N K LEQYPT A+ L N G++ + V D
Sbjct: 10 LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACG 68
Query: 66 XXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125
+ V A DID D++E A N ++F D+ + G DT + NP
Sbjct: 69 SYLLGAESVTAFDIDPDAIETAKRNCGG----VNFXVADVSEIS------GKYDTWIXNP 118
Query: 126 PFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY-D 184
PFG+ K D F+ A + S +YS+ R+ ++ R+F+A E Y
Sbjct: 119 PFGSVVKHSDRAFIDKAFET-SXWIYSIGNAKARDFLR----REFSARGDVFREEKVYIT 173
Query: 185 VPQLYKFH 192
VP++Y+ H
Sbjct: 174 VPRIYRHH 181
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 74 VIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG---T 129
V A D+D L LA E A L I F++ D R+L R VD ++ NPP G
Sbjct: 231 VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP-RFFP--EVDRILANPPHGLRLG 287
Query: 130 RKKG---VDMDFLSMALKV 145
RK+G + DFL AL +
Sbjct: 288 RKEGLFHLYWDFLRGALAL 306
>pdb|3K0B|A Chain A, Crystal Structure Of A Predicted N6-Adenine-Specific Dna
Methylase From Listeria Monocytogenes Str. 4b F2365
Length = 393
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 74 VIAIDIDSDSLELASENAADLELD--IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
+I DID+ +E+A +NA + L I F Q + + + + VV NPP+G R
Sbjct: 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ----TEDEYGVVVANPPYGER 320
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
++ DID +S+++A ENA +D ++++ ++ + + S ++ NPP+G R
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVD-EYIEFNVGDAT-QFKSEDEFGFIITNPPYGER 314
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 23/77 (29%)
Query: 118 VDTVVMNPPFGTRKKG-VD--------------MDFLS---MALKVASQAVY-----SLH 154
VD ++ NPPFGTR G VD ++FL + LK +A L
Sbjct: 254 VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHXXLXLKTGGRAAVVLPDNVLF 313
Query: 155 KTSTREHVKKAALRDFN 171
+ E ++K L+DFN
Sbjct: 314 EAGAGETIRKRLLQDFN 330
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHV---DTVVMNPP 126
+V+ +DI D + A E A E +++F+ D R L + + +V D++V P
Sbjct: 62 EVVGVDISEDXIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
+V +D+ + LE+A E A + +DF D R LE
Sbjct: 56 EVTGVDLSEEXLEIAQEKAXETNRHVDFWVQDXRELE 92
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128
+VIAIDID + LA NA + I+F+ D L S D V ++PP+G
Sbjct: 102 RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL----ASFLKADVVFLSPPWG 155
>pdb|1V4L|B Chain B, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|D Chain D, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|F Chain F, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
Length = 125
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 153 LHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAV 201
L +S EH + + N AE C ++ L FH +EVD V
Sbjct: 6 LGWSSYDEHCYQVFQQKMNWEDAEKFCTQQHRGSHLVSFHSSEEVDFVV 54
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 73 QVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHV 118
++ +IDI +SLE A EN + ++ F+Q +I +L + S H+
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHI 109
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128
+VIAIDID + LA NA + I+F+ D L S D V ++PP+G
Sbjct: 67 RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL----ASFLKADVVFLSPPWG 120
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 74 VIAIDIDSDSLELASENAADL 94
V+A+DI + LELA E ADL
Sbjct: 191 VVAVDIGDEKLELAKELGADL 211
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 74 VIAIDIDSDSLELASENAADL 94
V+A+DI + LELA E ADL
Sbjct: 191 VVAVDIGDEKLELAKELGADL 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,586,339
Number of Sequences: 62578
Number of extensions: 187047
Number of successful extensions: 442
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 16
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)