Query 027945
Match_columns 216
No_of_seqs 154 out of 3340
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2263 Predicted RNA methylas 100.0 8.2E-31 1.8E-35 195.4 22.9 196 3-208 1-196 (198)
2 KOG3420 Predicted RNA methylas 100.0 5.4E-30 1.2E-34 182.2 10.5 185 1-209 1-185 (185)
3 COG2265 TrmA SAM-dependent met 99.8 1.1E-17 2.5E-22 142.7 13.5 129 26-159 271-401 (432)
4 COG4123 Predicted O-methyltran 99.8 5.7E-17 1.2E-21 127.8 15.9 131 32-166 31-182 (248)
5 COG0742 N6-adenine-specific me 99.8 8.4E-17 1.8E-21 121.4 16.0 159 23-207 20-186 (187)
6 PF03602 Cons_hypoth95: Conser 99.7 4E-17 8.6E-22 124.7 13.4 156 23-205 19-183 (183)
7 PRK10909 rsmD 16S rRNA m(2)G96 99.7 9.5E-17 2.1E-21 124.1 14.0 100 25-129 33-133 (199)
8 PF05175 MTS: Methyltransferas 99.7 4.5E-16 9.8E-21 118.0 16.0 119 32-157 18-143 (170)
9 COG2890 HemK Methylase of poly 99.7 9.5E-17 2.1E-21 130.5 13.1 148 29-187 92-244 (280)
10 PRK03522 rumB 23S rRNA methylu 99.7 1.9E-16 4.2E-21 131.2 14.4 127 26-159 151-279 (315)
11 TIGR02085 meth_trns_rumB 23S r 99.7 2.5E-16 5.5E-21 133.3 14.2 126 26-158 211-338 (374)
12 PHA03412 putative methyltransf 99.7 3.7E-16 8E-21 122.3 13.5 121 19-153 26-160 (241)
13 PRK14966 unknown domain/N5-glu 99.7 1.6E-16 3.4E-21 134.0 12.0 150 29-187 234-387 (423)
14 TIGR00095 RNA methyltransferas 99.7 9E-16 1.9E-20 118.1 15.2 104 23-129 27-133 (189)
15 PRK13168 rumA 23S rRNA m(5)U19 99.7 3.4E-16 7.3E-21 135.4 13.8 126 27-158 276-404 (443)
16 TIGR00452 methyltransferase, p 99.7 2.2E-15 4.7E-20 124.0 16.5 139 3-147 75-216 (314)
17 TIGR03533 L3_gln_methyl protei 99.7 1.6E-15 3.5E-20 123.9 14.8 143 32-185 104-255 (284)
18 PRK05031 tRNA (uracil-5-)-meth 99.7 1.1E-15 2.4E-20 128.8 14.0 125 27-158 186-324 (362)
19 PF13659 Methyltransf_26: Meth 99.7 6E-16 1.3E-20 109.9 10.4 98 49-147 1-106 (117)
20 PF05958 tRNA_U5-meth_tr: tRNA 99.7 7.5E-16 1.6E-20 129.3 12.1 126 26-158 175-314 (352)
21 PRK11805 N5-glutamine S-adenos 99.7 3.2E-15 6.8E-20 123.3 15.0 126 50-184 135-266 (307)
22 PRK01544 bifunctional N5-gluta 99.7 9.4E-16 2E-20 134.2 12.3 176 3-186 69-274 (506)
23 TIGR03704 PrmC_rel_meth putati 99.7 1E-14 2.2E-19 117.1 17.0 124 3-130 40-166 (251)
24 COG2813 RsmC 16S RNA G1207 met 99.7 4.5E-15 9.8E-20 119.4 14.7 106 45-155 155-267 (300)
25 TIGR00537 hemK_rel_arch HemK-r 99.6 1.3E-14 2.7E-19 110.9 16.2 78 47-130 18-95 (179)
26 TIGR00536 hemK_fam HemK family 99.6 1.9E-15 4.1E-20 123.6 12.4 128 50-186 116-249 (284)
27 TIGR01177 conserved hypothetic 99.6 4.4E-15 9.6E-20 123.8 13.1 98 45-146 179-284 (329)
28 TIGR02143 trmA_only tRNA (urac 99.6 6E-15 1.3E-19 123.9 13.8 124 28-158 178-315 (353)
29 PRK14967 putative methyltransf 99.6 1.4E-14 2.9E-19 114.6 14.5 92 35-130 23-114 (223)
30 TIGR00138 gidB 16S rRNA methyl 99.6 2.5E-14 5.3E-19 109.4 15.1 159 17-186 11-173 (181)
31 TIGR00479 rumA 23S rRNA (uraci 99.6 7.8E-15 1.7E-19 126.6 13.7 127 28-159 272-401 (431)
32 PRK00107 gidB 16S rRNA methylt 99.6 9.8E-14 2.1E-18 106.4 17.8 168 5-187 2-174 (187)
33 COG2226 UbiE Methylase involve 99.6 1.5E-14 3.3E-19 114.0 13.2 135 5-148 12-148 (238)
34 PRK15001 SAM-dependent 23S rib 99.6 9.5E-15 2.1E-19 122.9 12.4 104 48-155 228-341 (378)
35 TIGR03534 RF_mod_PrmC protein- 99.6 9.6E-14 2.1E-18 111.3 15.3 94 32-130 72-167 (251)
36 PF01170 UPF0020: Putative RNA 99.6 2.1E-14 4.5E-19 109.6 10.6 95 29-130 13-119 (179)
37 PF01209 Ubie_methyltran: ubiE 99.6 2E-14 4.4E-19 114.0 10.7 136 3-147 6-144 (233)
38 PRK15068 tRNA mo(5)U34 methylt 99.6 1.1E-13 2.4E-18 114.8 15.4 139 3-147 76-217 (322)
39 PRK09489 rsmC 16S ribosomal RN 99.6 5.9E-14 1.3E-18 117.2 12.7 104 48-156 196-305 (342)
40 PRK15128 23S rRNA m(5)C1962 me 99.6 2.2E-13 4.8E-18 115.7 16.1 85 47-131 219-307 (396)
41 PRK09328 N5-glutamine S-adenos 99.5 2E-13 4.2E-18 111.1 14.6 95 32-130 92-188 (275)
42 PF12847 Methyltransf_18: Meth 99.5 6.3E-14 1.4E-18 98.6 10.1 74 48-125 1-78 (112)
43 PHA03411 putative methyltransf 99.5 5.5E-14 1.2E-18 112.5 10.7 94 23-130 45-139 (279)
44 COG2264 PrmA Ribosomal protein 99.5 1.6E-13 3.4E-18 111.1 13.0 126 26-161 141-268 (300)
45 TIGR00477 tehB tellurite resis 99.5 1.4E-13 3.1E-18 106.6 12.0 96 47-147 29-124 (195)
46 smart00650 rADc Ribosomal RNA 99.5 8.8E-14 1.9E-18 105.3 10.4 84 42-130 7-90 (169)
47 PF13847 Methyltransf_31: Meth 99.5 2.1E-13 4.6E-18 101.4 12.3 96 48-147 3-101 (152)
48 PRK11783 rlmL 23S rRNA m(2)G24 99.5 3.2E-13 7E-18 122.7 15.9 109 48-158 538-660 (702)
49 PF09445 Methyltransf_15: RNA 99.5 4.9E-13 1.1E-17 99.5 14.0 116 50-166 1-132 (163)
50 KOG1271 Methyltransferases [Ge 99.5 9.3E-13 2E-17 98.0 15.2 185 9-205 25-225 (227)
51 PRK11207 tellurite resistance 99.5 2.4E-13 5.2E-18 105.4 12.2 96 47-147 29-125 (197)
52 PF06325 PrmA: Ribosomal prote 99.5 1.3E-13 2.8E-18 112.4 10.8 95 26-126 140-234 (295)
53 COG1041 Predicted DNA modifica 99.5 9.1E-14 2E-18 113.9 9.2 118 30-155 183-309 (347)
54 TIGR02752 MenG_heptapren 2-hep 99.5 7.2E-13 1.6E-17 105.1 13.7 98 45-147 42-142 (231)
55 COG1092 Predicted SAM-dependen 99.5 1.1E-12 2.4E-17 110.3 15.4 124 47-170 216-354 (393)
56 PRK14968 putative methyltransf 99.5 2.6E-12 5.7E-17 98.5 16.1 79 47-130 22-103 (188)
57 PLN02672 methionine S-methyltr 99.5 3E-13 6.5E-18 125.8 12.7 176 28-208 97-306 (1082)
58 KOG2187 tRNA uracil-5-methyltr 99.5 2.7E-13 6E-18 115.2 10.8 128 26-158 361-494 (534)
59 PRK00274 ksgA 16S ribosomal RN 99.5 2.8E-13 6.2E-18 110.1 10.5 114 5-130 4-118 (272)
60 PRK14896 ksgA 16S ribosomal RN 99.5 4.5E-13 9.8E-18 108.1 11.1 101 19-130 3-104 (258)
61 PLN02244 tocopherol O-methyltr 99.5 2.2E-12 4.8E-17 108.0 15.6 111 32-147 97-214 (340)
62 COG2230 Cfa Cyclopropane fatty 99.5 1.9E-12 4E-17 104.1 13.8 114 28-147 52-167 (283)
63 PF03848 TehB: Tellurite resis 99.5 1.4E-12 3.1E-17 99.7 12.5 98 45-147 27-124 (192)
64 KOG2904 Predicted methyltransf 99.5 2.3E-12 5E-17 101.7 13.6 104 26-132 127-237 (328)
65 PTZ00338 dimethyladenosine tra 99.5 6E-13 1.3E-17 108.9 10.8 104 17-130 8-114 (294)
66 TIGR03587 Pse_Me-ase pseudamin 99.4 9.8E-13 2.1E-17 102.5 10.8 98 47-152 42-140 (204)
67 PRK08287 cobalt-precorrin-6Y C 99.4 1.7E-11 3.6E-16 94.3 17.3 92 46-147 29-122 (187)
68 TIGR00406 prmA ribosomal prote 99.4 4.7E-12 1E-16 103.7 14.9 111 26-147 138-250 (288)
69 PF13649 Methyltransf_25: Meth 99.4 4.1E-13 8.9E-18 92.9 6.9 93 52-147 1-98 (101)
70 PF10672 Methyltrans_SAM: S-ad 99.4 1.7E-13 3.7E-18 111.1 5.7 139 47-189 122-271 (286)
71 PLN02585 magnesium protoporphy 99.4 9E-12 2E-16 102.8 15.9 120 31-158 128-253 (315)
72 PRK12335 tellurite resistance 99.4 2.1E-12 4.5E-17 105.8 11.8 95 48-147 120-214 (287)
73 TIGR00080 pimt protein-L-isoas 99.4 5.9E-12 1.3E-16 99.0 13.8 86 39-127 68-156 (215)
74 PF08003 Methyltransf_9: Prote 99.4 5.1E-12 1.1E-16 101.9 13.6 125 3-131 69-196 (315)
75 PRK11727 23S rRNA mA1618 methy 99.4 1.4E-12 3E-17 107.6 10.5 85 48-132 114-204 (321)
76 PRK14103 trans-aconitate 2-met 99.4 1.6E-12 3.4E-17 104.8 10.6 106 30-147 11-117 (255)
77 PRK00121 trmB tRNA (guanine-N( 99.4 5.2E-12 1.1E-16 98.3 13.1 99 48-147 40-147 (202)
78 TIGR02021 BchM-ChlM magnesium 99.4 5.8E-12 1.3E-16 99.2 13.3 107 46-159 53-161 (219)
79 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.2E-12 9.2E-17 101.8 12.6 96 47-147 55-155 (247)
80 COG0116 Predicted N6-adenine-s 99.4 3.6E-12 7.8E-17 105.9 12.4 94 30-130 177-312 (381)
81 PRK10258 biotin biosynthesis p 99.4 2.7E-12 5.9E-17 103.1 11.4 107 31-147 25-131 (251)
82 COG2242 CobL Precorrin-6B meth 99.4 2.9E-11 6.3E-16 91.1 15.7 126 28-166 18-145 (187)
83 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.6E-12 3.5E-17 101.3 9.2 105 47-157 58-164 (243)
84 PLN02396 hexaprenyldihydroxybe 99.4 4.4E-12 9.5E-17 105.0 12.3 95 47-147 130-226 (322)
85 PRK00517 prmA ribosomal protei 99.4 1.3E-11 2.9E-16 99.1 14.6 105 26-147 98-204 (250)
86 PRK11036 putative S-adenosyl-L 99.4 8.8E-12 1.9E-16 100.5 13.4 95 47-147 43-140 (255)
87 PF08241 Methyltransf_11: Meth 99.4 2.2E-12 4.9E-17 87.5 8.3 88 53-147 1-88 (95)
88 KOG3191 Predicted N6-DNA-methy 99.4 3.4E-11 7.4E-16 89.7 14.6 81 47-131 42-124 (209)
89 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.8E-11 3.9E-16 94.7 13.8 117 48-164 16-140 (194)
90 PF08704 GCD14: tRNA methyltra 99.4 1.5E-11 3.1E-16 97.9 13.5 135 31-176 27-165 (247)
91 PF02353 CMAS: Mycolic acid cy 99.4 1E-11 2.3E-16 100.7 12.9 111 30-147 44-157 (273)
92 PRK10901 16S rRNA methyltransf 99.4 1.1E-11 2.4E-16 106.9 13.6 84 45-129 241-325 (427)
93 PRK04338 N(2),N(2)-dimethylgua 99.4 4.1E-12 9E-17 107.5 10.7 97 49-154 58-158 (382)
94 PLN02233 ubiquinone biosynthes 99.4 1.5E-11 3.3E-16 99.3 13.4 97 46-147 71-173 (261)
95 TIGR02469 CbiT precorrin-6Y C5 99.4 4.6E-11 1E-15 85.2 14.3 96 45-147 16-113 (124)
96 TIGR00446 nop2p NOL1/NOP2/sun 99.4 8.3E-12 1.8E-16 101.1 11.4 83 45-130 68-153 (264)
97 PRK05785 hypothetical protein; 99.4 1.5E-11 3.3E-16 97.3 12.3 108 28-149 33-140 (226)
98 PRK13942 protein-L-isoaspartat 99.4 3.2E-11 7E-16 94.5 14.1 92 28-126 60-154 (212)
99 TIGR00755 ksgA dimethyladenosi 99.4 7.8E-12 1.7E-16 100.7 10.8 109 19-143 3-115 (253)
100 PRK13944 protein-L-isoaspartat 99.4 3.2E-11 7E-16 94.1 14.0 84 42-128 66-153 (205)
101 PRK01683 trans-aconitate 2-met 99.4 1.4E-11 3E-16 99.4 12.2 105 39-153 22-128 (258)
102 PRK00312 pcm protein-L-isoaspa 99.3 1.3E-10 2.8E-15 91.1 16.9 91 29-127 63-154 (212)
103 PTZ00098 phosphoethanolamine N 99.3 1.4E-11 3E-16 99.7 11.7 100 44-147 48-147 (263)
104 PF02384 N6_Mtase: N-6 DNA Met 99.3 8.6E-12 1.9E-16 103.3 10.6 124 19-147 21-174 (311)
105 PRK14121 tRNA (guanine-N(7)-)- 99.3 1E-10 2.2E-15 98.5 16.7 121 45-166 119-245 (390)
106 TIGR00308 TRM1 tRNA(guanine-26 99.3 2E-11 4.4E-16 102.9 12.4 98 49-154 45-147 (374)
107 PRK00377 cbiT cobalt-precorrin 99.3 1E-10 2.2E-15 90.8 15.3 98 43-147 35-136 (198)
108 TIGR00740 methyltransferase, p 99.3 4E-11 8.6E-16 95.7 13.3 102 47-153 52-159 (239)
109 TIGR02987 met_A_Alw26 type II 99.3 9.2E-12 2E-16 110.1 10.2 109 22-130 2-125 (524)
110 COG2519 GCD14 tRNA(1-methylade 99.3 5.5E-11 1.2E-15 93.5 13.3 111 45-166 91-205 (256)
111 PRK14904 16S rRNA methyltransf 99.3 6.8E-11 1.5E-15 102.5 15.0 82 45-130 247-331 (445)
112 PRK07580 Mg-protoporphyrin IX 99.3 1E-10 2.2E-15 92.6 14.6 106 46-158 61-168 (230)
113 PF02475 Met_10: Met-10+ like- 99.3 1.8E-11 3.9E-16 94.6 9.6 91 47-147 100-193 (200)
114 PRK14902 16S rRNA methyltransf 99.3 4.1E-11 8.8E-16 103.9 12.5 83 45-129 247-332 (444)
115 COG2518 Pcm Protein-L-isoaspar 99.3 1E-10 2.2E-15 90.0 13.0 93 26-126 54-147 (209)
116 PRK14903 16S rRNA methyltransf 99.3 8.3E-11 1.8E-15 101.4 14.0 83 45-130 234-320 (431)
117 PRK07402 precorrin-6B methylas 99.3 2.6E-10 5.6E-15 88.3 15.2 95 45-147 37-133 (196)
118 PLN02781 Probable caffeoyl-CoA 99.3 1.6E-10 3.5E-15 91.9 14.0 113 33-153 56-176 (234)
119 PLN02336 phosphoethanolamine N 99.3 1.1E-10 2.3E-15 102.2 14.1 97 46-147 264-360 (475)
120 PRK06922 hypothetical protein; 99.3 2.9E-11 6.3E-16 106.9 10.4 98 47-147 417-528 (677)
121 PRK11873 arsM arsenite S-adeno 99.3 1E-10 2.2E-15 95.1 12.9 97 46-147 75-174 (272)
122 PRK11783 rlmL 23S rRNA m(2)G24 99.3 3.2E-11 6.9E-16 109.8 10.9 101 26-130 171-316 (702)
123 PRK14901 16S rRNA methyltransf 99.3 9.7E-11 2.1E-15 101.2 13.1 85 45-129 249-337 (434)
124 PRK06202 hypothetical protein; 99.3 6.9E-11 1.5E-15 93.9 11.2 100 47-151 59-163 (232)
125 PRK11705 cyclopropane fatty ac 99.3 1.5E-10 3.3E-15 98.3 13.8 108 32-147 151-258 (383)
126 COG0030 KsgA Dimethyladenosine 99.3 6.2E-11 1.3E-15 94.4 10.6 103 20-130 5-108 (259)
127 TIGR03840 TMPT_Se_Te thiopurin 99.2 5.7E-11 1.2E-15 93.1 10.1 98 47-147 33-143 (213)
128 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.7E-10 3.7E-15 96.0 13.2 109 32-147 96-206 (340)
129 COG2520 Predicted methyltransf 99.2 7E-11 1.5E-15 97.7 10.3 92 47-147 187-280 (341)
130 TIGR00563 rsmB ribosomal RNA s 99.2 1.5E-10 3.2E-15 99.9 12.7 85 45-130 235-322 (426)
131 TIGR02072 BioC biotin biosynth 99.2 9.8E-11 2.1E-15 92.9 10.8 93 47-147 33-126 (240)
132 KOG1540 Ubiquinone biosynthesi 99.2 2.7E-10 6E-15 89.3 12.8 105 44-153 96-212 (296)
133 PF05401 NodS: Nodulation prot 99.2 1.7E-10 3.7E-15 87.7 11.4 97 45-147 40-137 (201)
134 PRK00216 ubiE ubiquinone/menaq 99.2 2.9E-10 6.2E-15 90.3 13.0 96 47-147 50-149 (239)
135 PF07021 MetW: Methionine bios 99.2 4.9E-11 1.1E-15 90.4 8.0 96 47-151 12-107 (193)
136 PRK04266 fibrillarin; Provisio 99.2 4.5E-10 9.8E-15 88.7 13.9 113 29-147 54-167 (226)
137 PF01596 Methyltransf_3: O-met 99.2 5.2E-11 1.1E-15 92.6 8.3 118 31-156 31-156 (205)
138 KOG2730 Methylase [General fun 99.2 7.7E-11 1.7E-15 90.3 8.8 140 23-166 72-227 (263)
139 PF01135 PCMT: Protein-L-isoas 99.2 2.2E-10 4.7E-15 89.4 11.4 92 28-126 56-150 (209)
140 PLN02476 O-methyltransferase 99.2 3.9E-10 8.6E-15 91.1 13.3 118 30-155 103-228 (278)
141 PRK00811 spermidine synthase; 99.2 1.9E-10 4.2E-15 94.0 11.3 105 47-153 75-189 (283)
142 COG4106 Tam Trans-aconitate me 99.2 1.1E-10 2.5E-15 89.3 8.8 110 39-158 21-132 (257)
143 PRK08317 hypothetical protein; 99.2 1.1E-09 2.3E-14 86.9 14.2 98 45-147 16-115 (241)
144 KOG0820 Ribosomal RNA adenine 99.2 3E-10 6.5E-15 89.8 10.1 91 34-130 44-136 (315)
145 PF10294 Methyltransf_16: Puta 99.2 1.9E-10 4.1E-15 87.4 8.8 131 23-155 18-157 (173)
146 COG4122 Predicted O-methyltran 99.2 1.4E-09 3.1E-14 84.7 13.6 122 25-155 39-166 (219)
147 TIGR02081 metW methionine bios 99.2 4.7E-10 1E-14 86.7 11.0 90 48-148 13-104 (194)
148 PRK13255 thiopurine S-methyltr 99.1 5.7E-10 1.2E-14 87.8 11.3 98 47-147 36-146 (218)
149 PLN02336 phosphoethanolamine N 99.1 3E-10 6.5E-15 99.4 10.6 98 45-147 34-133 (475)
150 PRK13943 protein-L-isoaspartat 99.1 5.9E-10 1.3E-14 92.3 11.5 85 39-126 71-158 (322)
151 PLN03075 nicotianamine synthas 99.1 1.7E-09 3.6E-14 88.0 13.8 98 47-148 122-225 (296)
152 PRK10742 putative methyltransf 99.1 1.4E-09 3E-14 86.0 12.8 86 46-134 84-181 (250)
153 PRK04457 spermidine synthase; 99.1 2E-09 4.3E-14 87.1 13.9 104 47-153 65-175 (262)
154 PRK05134 bifunctional 3-demeth 99.1 2.4E-09 5.3E-14 85.0 13.7 111 32-147 32-142 (233)
155 smart00828 PKS_MT Methyltransf 99.1 9.2E-10 2E-14 86.9 10.5 92 50-147 1-95 (224)
156 cd02440 AdoMet_MTases S-adenos 99.1 1.4E-09 3E-14 74.0 9.9 92 51-146 1-94 (107)
157 PRK04148 hypothetical protein; 99.1 3.3E-09 7.2E-14 76.3 11.9 73 45-126 13-87 (134)
158 PRK11088 rrmA 23S rRNA methylt 99.1 3.6E-09 7.8E-14 86.1 13.4 71 47-124 84-158 (272)
159 smart00138 MeTrc Methyltransfe 99.1 1.4E-09 3E-14 88.1 10.8 96 48-146 99-232 (264)
160 COG3897 Predicted methyltransf 99.1 1.8E-10 3.9E-15 86.9 5.1 129 23-164 58-187 (218)
161 PRK11188 rrmJ 23S rRNA methylt 99.1 4.6E-09 9.9E-14 82.2 12.5 83 34-126 36-126 (209)
162 TIGR03438 probable methyltrans 99.0 4.2E-09 9E-14 86.9 12.7 105 48-152 63-174 (301)
163 PRK13256 thiopurine S-methyltr 99.0 3.8E-09 8.3E-14 83.1 11.7 100 47-147 42-154 (226)
164 PF08242 Methyltransf_12: Meth 99.0 6.4E-11 1.4E-15 81.5 1.3 92 53-147 1-94 (99)
165 TIGR02716 C20_methyl_CrtF C-20 99.0 5.6E-09 1.2E-13 86.4 13.0 97 45-147 146-245 (306)
166 KOG1270 Methyltransferases [Co 99.0 5.2E-10 1.1E-14 88.1 6.2 100 49-157 90-198 (282)
167 TIGR00417 speE spermidine synt 99.0 1.1E-08 2.5E-13 83.1 14.1 105 47-153 71-184 (270)
168 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.1E-08 2.4E-13 80.3 13.6 96 46-147 37-134 (223)
169 TIGR01983 UbiG ubiquinone bios 99.0 1E-08 2.3E-13 80.8 13.1 96 47-147 44-140 (224)
170 PLN02366 spermidine synthase 99.0 1.3E-08 2.8E-13 84.0 14.0 105 47-152 90-203 (308)
171 COG2521 Predicted archaeal met 99.0 6.5E-10 1.4E-14 86.1 5.7 113 45-158 131-249 (287)
172 PF05971 Methyltransf_10: Prot 98.9 4.7E-09 1E-13 85.4 9.2 84 49-132 103-192 (299)
173 PRK03612 spermidine synthase; 98.9 2.5E-08 5.5E-13 88.1 14.5 104 47-152 296-412 (521)
174 PF13489 Methyltransf_23: Meth 98.9 7.1E-09 1.5E-13 77.1 9.5 87 46-147 20-106 (161)
175 PTZ00146 fibrillarin; Provisio 98.9 6.2E-09 1.3E-13 84.5 9.5 94 31-126 116-211 (293)
176 PRK00050 16S rRNA m(4)C1402 me 98.9 6.9E-09 1.5E-13 84.8 9.2 94 35-129 6-102 (296)
177 PF00398 RrnaAD: Ribosomal RNA 98.9 5.8E-09 1.3E-13 84.4 8.6 116 18-144 3-119 (262)
178 PLN02589 caffeoyl-CoA O-methyl 98.9 4.7E-08 1E-12 78.1 13.3 115 32-154 66-189 (247)
179 KOG2671 Putative RNA methylase 98.9 1.3E-09 2.8E-14 88.8 4.3 102 26-130 186-297 (421)
180 PRK01581 speE spermidine synth 98.9 6.8E-08 1.5E-12 80.6 14.4 106 46-153 148-266 (374)
181 KOG4300 Predicted methyltransf 98.9 3.5E-08 7.5E-13 75.3 11.5 93 50-147 78-173 (252)
182 COG3963 Phospholipid N-methylt 98.9 6.7E-08 1.4E-12 71.4 12.6 127 13-147 16-147 (194)
183 KOG2915 tRNA(1-methyladenosine 98.9 1.1E-07 2.4E-12 75.4 14.5 119 45-171 102-224 (314)
184 PF05724 TPMT: Thiopurine S-me 98.9 2.9E-08 6.4E-13 78.0 11.0 100 45-147 34-146 (218)
185 PF02390 Methyltransf_4: Putat 98.9 6.5E-08 1.4E-12 74.8 12.6 117 50-166 19-143 (195)
186 KOG1499 Protein arginine N-met 98.9 9.7E-09 2.1E-13 84.2 8.1 74 47-124 59-134 (346)
187 KOG1500 Protein arginine N-met 98.9 1.5E-08 3.3E-13 82.5 8.8 77 45-126 174-252 (517)
188 KOG1975 mRNA cap methyltransfe 98.8 7.2E-08 1.6E-12 78.2 12.4 116 47-162 116-244 (389)
189 PF03291 Pox_MCEL: mRNA cappin 98.8 3.5E-08 7.5E-13 82.2 10.5 114 48-161 62-192 (331)
190 TIGR00438 rrmJ cell division p 98.8 7.8E-08 1.7E-12 73.9 11.8 70 47-126 31-107 (188)
191 TIGR00478 tly hemolysin TlyA f 98.8 6.5E-08 1.4E-12 76.4 11.2 54 33-86 59-113 (228)
192 KOG1541 Predicted protein carb 98.8 5.2E-08 1.1E-12 75.1 9.9 86 30-123 30-118 (270)
193 COG0220 Predicted S-adenosylme 98.8 2.2E-07 4.7E-12 73.3 12.9 116 49-164 49-172 (227)
194 PRK11933 yebU rRNA (cytosine-C 98.7 6.3E-07 1.4E-11 77.9 15.9 84 45-130 110-196 (470)
195 PF05185 PRMT5: PRMT5 arginine 98.7 2.8E-08 6.1E-13 85.9 7.3 74 49-126 187-267 (448)
196 COG4076 Predicted RNA methylas 98.7 1.9E-08 4.2E-13 75.6 4.9 94 48-147 32-126 (252)
197 PLN02823 spermine synthase 98.7 1.9E-06 4.1E-11 72.0 15.8 103 48-152 103-217 (336)
198 COG0144 Sun tRNA and rRNA cyto 98.6 7.7E-07 1.7E-11 75.0 13.3 125 30-157 141-292 (355)
199 PF02527 GidB: rRNA small subu 98.6 1.3E-06 2.8E-11 66.8 13.2 149 4-164 3-158 (184)
200 PF01861 DUF43: Protein of unk 98.6 1.4E-06 3.1E-11 68.5 12.8 133 18-157 15-152 (243)
201 COG0286 HsdM Type I restrictio 98.6 1.9E-07 4.2E-12 81.8 8.8 105 20-128 162-275 (489)
202 PF11599 AviRa: RRNA methyltra 98.6 2.1E-06 4.5E-11 66.1 12.4 119 29-147 32-205 (246)
203 COG0357 GidB Predicted S-adeno 98.6 2.2E-06 4.8E-11 66.8 12.5 170 5-187 23-200 (215)
204 PF01564 Spermine_synth: Sperm 98.5 3.7E-06 8.1E-11 67.4 13.9 105 47-152 75-188 (246)
205 COG0421 SpeE Spermidine syntha 98.5 2.9E-06 6.3E-11 69.0 13.0 104 49-154 77-189 (282)
206 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 6.3E-06 1.4E-10 67.5 13.2 97 30-130 70-169 (283)
207 KOG2899 Predicted methyltransf 98.4 2.8E-06 6E-11 66.6 10.2 49 46-94 56-105 (288)
208 KOG1663 O-methyltransferase [S 98.4 7.6E-06 1.7E-10 63.7 12.6 104 47-155 72-183 (237)
209 COG4976 Predicted methyltransf 98.4 9.4E-08 2E-12 74.1 2.0 73 49-127 126-198 (287)
210 COG1867 TRM1 N2,N2-dimethylgua 98.4 6.3E-06 1.4E-10 68.4 11.5 98 49-154 53-153 (380)
211 PF05891 Methyltransf_PK: AdoM 98.4 1.1E-06 2.3E-11 68.2 6.6 102 49-153 56-158 (218)
212 COG3129 Predicted SAM-dependen 98.4 7.4E-06 1.6E-10 63.8 10.8 119 48-166 78-217 (292)
213 TIGR00006 S-adenosyl-methyltra 98.3 4.4E-06 9.5E-11 68.6 9.8 95 35-129 7-104 (305)
214 PF04445 SAM_MT: Putative SAM- 98.3 2.3E-06 5.1E-11 67.4 7.8 91 50-143 77-181 (234)
215 PRK01544 bifunctional N5-gluta 98.3 1.9E-05 4.2E-10 69.7 14.2 119 47-166 346-472 (506)
216 PF08123 DOT1: Histone methyla 98.3 1E-05 2.2E-10 63.0 11.0 109 42-156 36-159 (205)
217 TIGR01444 fkbM_fam methyltrans 98.3 3.8E-06 8.3E-11 61.4 7.4 57 51-107 1-59 (143)
218 PRK11760 putative 23S rRNA C24 98.3 7E-06 1.5E-10 68.0 9.4 89 28-126 183-279 (357)
219 PRK00536 speE spermidine synth 98.3 2.9E-05 6.3E-10 62.6 12.8 107 32-153 57-169 (262)
220 KOG1661 Protein-L-isoaspartate 98.3 1.2E-05 2.6E-10 61.8 9.9 90 30-124 66-169 (237)
221 PF04816 DUF633: Family of unk 98.2 3.9E-05 8.4E-10 59.7 12.8 100 52-162 1-108 (205)
222 PF02005 TRM: N2,N2-dimethylgu 98.2 8.9E-06 1.9E-10 69.0 9.9 92 48-147 49-145 (377)
223 PF09243 Rsm22: Mitochondrial 98.2 2.5E-05 5.3E-10 63.7 11.3 131 25-159 10-143 (274)
224 KOG3010 Methyltransferase [Gen 98.2 1.5E-06 3.2E-11 68.1 3.8 91 50-147 35-127 (261)
225 PF01739 CheR: CheR methyltran 98.2 2.1E-05 4.5E-10 60.9 10.0 97 48-147 31-166 (196)
226 PF13679 Methyltransf_32: Meth 98.2 2.2E-05 4.9E-10 57.5 9.7 74 46-123 23-105 (141)
227 KOG2361 Predicted methyltransf 98.2 9.2E-06 2E-10 63.7 7.6 107 50-156 73-183 (264)
228 COG4262 Predicted spermidine s 98.1 4.4E-05 9.6E-10 63.4 11.4 77 48-126 289-374 (508)
229 KOG2793 Putative N2,N2-dimethy 98.1 0.00011 2.3E-09 58.5 12.8 103 49-153 87-198 (248)
230 PF00891 Methyltransf_2: O-met 98.1 4.7E-05 1E-09 60.8 10.7 93 43-147 95-188 (241)
231 cd00315 Cyt_C5_DNA_methylase C 98.0 1.4E-05 3.1E-10 65.1 6.9 74 51-130 2-75 (275)
232 PHA01634 hypothetical protein 98.0 3.4E-05 7.4E-10 54.6 7.6 75 46-126 26-101 (156)
233 COG1189 Predicted rRNA methyla 98.0 3.6E-05 7.8E-10 60.4 8.4 92 34-130 64-157 (245)
234 PF05219 DREV: DREV methyltran 98.0 2.4E-05 5.2E-10 62.3 7.1 84 48-145 94-177 (265)
235 KOG1122 tRNA and rRNA cytosine 97.9 0.00025 5.3E-09 60.0 11.5 85 44-129 237-324 (460)
236 PF06080 DUF938: Protein of un 97.8 0.00016 3.4E-09 55.9 9.0 107 50-156 27-142 (204)
237 KOG2940 Predicted methyltransf 97.8 5.7E-05 1.2E-09 58.9 6.4 79 48-130 72-150 (325)
238 PF01795 Methyltransf_5: MraW 97.8 5.9E-05 1.3E-09 62.0 6.3 94 35-128 7-104 (310)
239 PF12147 Methyltransf_20: Puta 97.8 0.001 2.3E-08 53.9 12.7 112 35-146 121-239 (311)
240 PRK11524 putative methyltransf 97.7 0.00014 3.1E-09 59.5 8.1 58 34-93 195-252 (284)
241 COG1352 CheR Methylase of chem 97.7 0.0006 1.3E-08 55.2 11.5 111 48-186 96-246 (268)
242 PRK10611 chemotaxis methyltran 97.7 0.00021 4.6E-09 58.4 8.1 95 49-145 116-251 (287)
243 PF01728 FtsJ: FtsJ-like methy 97.7 7.5E-05 1.6E-09 56.9 5.2 86 33-128 5-102 (181)
244 KOG1227 Putative methyltransfe 97.6 6.9E-05 1.5E-09 60.6 4.4 96 48-151 194-293 (351)
245 PF01555 N6_N4_Mtase: DNA meth 97.6 0.0002 4.3E-09 56.1 6.7 55 29-89 177-231 (231)
246 PRK13699 putative methylase; P 97.6 0.00034 7.4E-09 55.4 8.0 47 47-94 162-208 (227)
247 PLN02232 ubiquinone biosynthes 97.6 0.0003 6.5E-09 52.6 7.3 68 75-147 1-72 (160)
248 KOG4058 Uncharacterized conser 97.6 0.00018 4E-09 52.3 5.7 68 45-112 69-138 (199)
249 COG0275 Predicted S-adenosylme 97.6 0.00078 1.7E-08 54.8 9.7 94 33-126 8-105 (314)
250 PF00145 DNA_methylase: C-5 cy 97.6 0.00017 3.6E-09 59.9 6.0 73 51-130 2-74 (335)
251 COG2384 Predicted SAM-dependen 97.5 0.0016 3.4E-08 50.7 10.3 73 48-123 16-91 (226)
252 KOG3201 Uncharacterized conser 97.5 5.6E-05 1.2E-09 55.8 2.2 121 26-151 11-138 (201)
253 PF07942 N2227: N2227-like pro 97.5 0.0016 3.5E-08 52.7 10.7 122 32-156 36-203 (270)
254 TIGR00497 hsdM type I restrict 97.5 0.0006 1.3E-08 60.3 8.9 104 23-129 194-305 (501)
255 PF01269 Fibrillarin: Fibrilla 97.5 0.011 2.5E-07 46.2 14.4 144 31-181 57-211 (229)
256 COG1568 Predicted methyltransf 97.4 0.00047 1E-08 55.3 6.4 117 45-166 149-272 (354)
257 PF07091 FmrO: Ribosomal RNA m 97.4 0.00085 1.8E-08 53.3 7.7 72 48-123 105-177 (251)
258 PF06962 rRNA_methylase: Putat 97.4 0.00074 1.6E-08 49.1 6.6 84 73-157 1-95 (140)
259 PF05148 Methyltransf_8: Hypot 97.4 0.0033 7.2E-08 48.7 10.3 98 22-147 51-149 (219)
260 COG0293 FtsJ 23S rRNA methylas 97.3 0.0013 2.9E-08 50.8 7.7 87 31-127 27-121 (205)
261 TIGR03439 methyl_EasF probable 97.3 0.0079 1.7E-07 50.0 12.7 100 48-147 76-188 (319)
262 KOG1501 Arginine N-methyltrans 97.3 0.00062 1.3E-08 57.9 5.7 58 51-108 69-128 (636)
263 COG0270 Dcm Site-specific DNA 97.2 0.0038 8.2E-08 52.3 9.8 106 49-158 3-119 (328)
264 KOG1253 tRNA methyltransferase 97.2 0.00042 9.2E-09 59.7 4.0 102 47-154 108-216 (525)
265 TIGR00675 dcm DNA-methyltransf 97.1 0.00088 1.9E-08 55.7 5.5 72 52-130 1-72 (315)
266 KOG2078 tRNA modification enzy 97.1 0.00026 5.6E-09 59.9 2.2 62 47-109 248-312 (495)
267 PRK10458 DNA cytosine methylas 97.1 0.0033 7.2E-08 54.9 9.1 81 49-130 88-182 (467)
268 KOG1709 Guanidinoacetate methy 97.1 0.0065 1.4E-07 47.2 9.4 109 47-158 100-209 (271)
269 KOG3115 Methyltransferase-like 97.0 0.0059 1.3E-07 47.0 8.4 65 48-112 60-133 (249)
270 KOG2912 Predicted DNA methylas 97.0 0.0009 2E-08 54.7 4.0 79 52-130 106-191 (419)
271 KOG0821 Predicted ribosomal RN 97.0 0.005 1.1E-07 48.0 7.7 108 37-145 39-156 (326)
272 COG0500 SmtA SAM-dependent met 96.9 0.019 4.2E-07 41.0 10.6 90 52-147 52-146 (257)
273 COG1889 NOP1 Fibrillarin-like 96.9 0.029 6.3E-07 43.3 11.0 94 31-126 60-154 (231)
274 KOG2198 tRNA cytosine-5-methyl 96.8 0.013 2.9E-07 49.0 9.5 114 45-158 152-301 (375)
275 PF03059 NAS: Nicotianamine sy 96.7 0.0079 1.7E-07 48.9 7.7 95 49-147 121-221 (276)
276 KOG3045 Predicted RNA methylas 96.7 0.0093 2E-07 47.7 7.7 82 47-153 179-263 (325)
277 KOG2352 Predicted spermine/spe 96.7 0.034 7.3E-07 48.3 11.4 80 48-130 47-127 (482)
278 PF11968 DUF3321: Putative met 96.7 0.0028 6.1E-08 49.3 4.4 91 50-156 53-151 (219)
279 KOG1269 SAM-dependent methyltr 96.7 0.0057 1.2E-07 51.8 6.6 97 47-148 109-207 (364)
280 PF13578 Methyltransf_24: Meth 96.6 0.00085 1.9E-08 46.3 1.0 72 53-126 1-78 (106)
281 COG2961 ComJ Protein involved 96.4 0.039 8.4E-07 43.9 9.4 127 53-182 93-222 (279)
282 PF03141 Methyltransf_29: Puta 96.4 0.0082 1.8E-07 52.2 5.9 66 50-123 119-187 (506)
283 PF07757 AdoMet_MTase: Predict 96.4 0.0082 1.8E-07 41.4 4.6 50 31-81 41-90 (112)
284 KOG3987 Uncharacterized conser 96.2 0.00085 1.8E-08 51.7 -1.0 42 48-90 112-153 (288)
285 KOG1562 Spermidine synthase [A 96.0 0.023 5E-07 46.3 6.4 111 47-158 120-238 (337)
286 KOG2798 Putative trehalase [Ca 95.8 0.072 1.6E-06 43.8 8.4 122 32-156 130-297 (369)
287 KOG3178 Hydroxyindole-O-methyl 95.8 0.062 1.4E-06 44.8 8.0 88 50-147 179-266 (342)
288 PF04989 CmcI: Cephalosporin h 95.7 0.12 2.5E-06 40.3 8.9 115 48-165 32-156 (206)
289 PF04378 RsmJ: Ribosomal RNA s 95.6 0.042 9.1E-07 43.9 6.3 102 53-156 62-165 (245)
290 COG1565 Uncharacterized conser 95.5 0.089 1.9E-06 44.2 8.2 73 23-95 45-133 (370)
291 PRK11524 putative methyltransf 95.5 0.059 1.3E-06 44.2 7.0 63 97-160 8-86 (284)
292 PF10237 N6-adenineMlase: Prob 95.3 0.59 1.3E-05 35.0 11.3 89 29-128 8-97 (162)
293 PF02636 Methyltransf_28: Puta 95.1 0.13 2.7E-06 41.4 7.8 45 49-93 19-72 (252)
294 PF04672 Methyltransf_19: S-ad 95.1 0.29 6.3E-06 39.6 9.6 102 50-151 70-185 (267)
295 KOG0822 Protein kinase inhibit 95.0 0.028 6E-07 49.3 3.9 106 13-124 335-446 (649)
296 PF07669 Eco57I: Eco57I restri 94.7 0.054 1.2E-06 37.5 4.1 32 117-148 2-45 (106)
297 COG0863 DNA modification methy 94.7 0.18 3.9E-06 41.3 7.9 49 45-94 219-267 (302)
298 PF07279 DUF1442: Protein of u 94.6 1.2 2.7E-05 34.8 11.5 88 33-126 29-124 (218)
299 COG5459 Predicted rRNA methyla 94.5 0.15 3.2E-06 42.8 6.7 119 37-159 102-229 (484)
300 PF02086 MethyltransfD12: D12 94.4 0.096 2.1E-06 42.0 5.4 40 48-88 20-59 (260)
301 KOG2920 Predicted methyltransf 94.3 0.032 7E-07 45.2 2.5 38 47-84 115-152 (282)
302 PF03686 UPF0146: Uncharacteri 94.3 0.35 7.6E-06 34.5 7.4 65 48-126 13-80 (127)
303 KOG2360 Proliferation-associat 94.2 0.13 2.9E-06 43.4 5.9 85 45-130 210-297 (413)
304 KOG2651 rRNA adenine N-6-methy 94.0 0.18 4E-06 42.6 6.3 42 48-89 153-194 (476)
305 KOG1596 Fibrillarin and relate 94.0 0.21 4.6E-06 39.7 6.3 77 45-126 153-235 (317)
306 COG1748 LYS9 Saccharopine dehy 93.9 0.76 1.6E-05 39.4 10.0 86 50-147 2-93 (389)
307 KOG1331 Predicted methyltransf 93.8 0.041 8.8E-07 44.6 2.1 89 47-147 44-134 (293)
308 KOG1201 Hydroxysteroid 17-beta 93.6 0.45 9.8E-06 39.0 7.8 80 46-127 35-124 (300)
309 KOG0024 Sorbitol dehydrogenase 93.6 0.2 4.3E-06 41.6 5.7 44 46-89 167-212 (354)
310 PTZ00357 methyltransferase; Pr 92.9 0.33 7.2E-06 44.3 6.5 74 50-123 702-798 (1072)
311 PRK05867 short chain dehydroge 92.2 2.9 6.2E-05 33.1 10.7 81 47-128 7-97 (253)
312 PF02254 TrkA_N: TrkA-N domain 91.4 2.3 5E-05 29.3 8.3 64 57-126 4-71 (116)
313 COG1064 AdhP Zn-dependent alco 91.2 1.7 3.8E-05 36.5 8.5 47 45-92 163-211 (339)
314 PRK13699 putative methylase; P 90.9 0.13 2.9E-06 40.7 1.6 30 98-128 2-31 (227)
315 PF00106 adh_short: short chai 90.8 3.6 7.8E-05 30.0 9.3 95 51-145 2-110 (167)
316 KOG4589 Cell division protein 90.8 0.42 9.2E-06 36.6 4.1 84 35-128 55-147 (232)
317 PRK06139 short chain dehydroge 90.6 4.7 0.0001 33.7 10.8 81 47-128 5-95 (330)
318 PF01488 Shikimate_DH: Shikima 90.0 3.5 7.6E-05 29.6 8.4 77 45-128 8-86 (135)
319 COG4301 Uncharacterized conser 90.0 6.7 0.00015 31.6 10.3 129 24-154 55-191 (321)
320 COG1063 Tdh Threonine dehydrog 89.9 1.1 2.4E-05 37.8 6.4 45 47-91 167-213 (350)
321 PRK12548 shikimate 5-dehydroge 89.3 9.9 0.00021 31.2 11.5 83 47-130 124-212 (289)
322 PF05050 Methyltransf_21: Meth 89.3 1.2 2.6E-05 32.6 5.6 52 54-105 1-61 (167)
323 KOG2352 Predicted spermine/spe 89.2 0.2 4.3E-06 43.7 1.5 76 49-124 296-377 (482)
324 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.1 0.78 1.7E-05 37.0 4.7 92 32-123 38-164 (256)
325 COG1743 Adenine-specific DNA m 89.0 0.56 1.2E-05 43.3 4.1 44 48-92 90-133 (875)
326 PRK08303 short chain dehydroge 88.8 3.9 8.4E-05 33.7 8.9 78 47-125 6-103 (305)
327 PRK08589 short chain dehydroge 88.3 5.7 0.00012 31.9 9.4 80 47-128 4-93 (272)
328 PRK05854 short chain dehydroge 87.9 6.2 0.00013 32.6 9.6 80 47-127 12-103 (313)
329 COG5379 BtaA S-adenosylmethion 87.5 1.9 4.2E-05 35.4 5.9 45 48-93 63-107 (414)
330 PRK08339 short chain dehydroge 87.4 5.3 0.00012 31.9 8.7 80 47-127 6-95 (263)
331 TIGR01712 phage_N6A_met phage 87.2 4.8 0.0001 30.2 7.5 42 120-166 64-109 (166)
332 PRK08217 fabG 3-ketoacyl-(acyl 87.0 8.2 0.00018 30.2 9.5 78 48-127 4-92 (253)
333 COG4798 Predicted methyltransf 87.0 11 0.00024 29.3 9.4 106 45-154 45-165 (238)
334 PRK05876 short chain dehydroge 86.9 5.3 0.00011 32.2 8.4 81 47-128 4-94 (275)
335 PRK08862 short chain dehydroge 86.8 5.4 0.00012 31.3 8.2 78 48-126 4-92 (227)
336 PRK01747 mnmC bifunctional tRN 86.6 3.8 8.2E-05 37.8 8.2 97 49-147 58-197 (662)
337 PRK07062 short chain dehydroge 86.6 6.9 0.00015 31.1 8.9 80 47-127 6-97 (265)
338 PRK07791 short chain dehydroge 86.6 16 0.00034 29.7 11.3 81 47-128 4-103 (286)
339 PRK06720 hypothetical protein; 86.5 9.4 0.0002 28.6 9.0 81 48-129 15-105 (169)
340 PRK08085 gluconate 5-dehydroge 86.5 8 0.00017 30.5 9.2 80 47-127 7-96 (254)
341 COG3392 Adenine-specific DNA m 86.4 0.48 1E-05 38.2 1.9 48 100-151 190-237 (330)
342 PRK03659 glutathione-regulated 86.2 4.8 0.0001 36.7 8.5 63 57-125 406-472 (601)
343 PRK06124 gluconate 5-dehydroge 86.2 6.7 0.00015 30.9 8.6 80 47-128 9-99 (256)
344 KOG3924 Putative protein methy 86.1 1.2 2.6E-05 38.0 4.2 93 34-126 178-281 (419)
345 PF05206 TRM13: Methyltransfer 86.0 2.7 5.9E-05 34.0 6.1 47 35-81 5-57 (259)
346 KOG0725 Reductases with broad 85.9 9.8 0.00021 30.9 9.4 83 47-130 6-102 (270)
347 PRK06172 short chain dehydroge 85.7 7.2 0.00016 30.7 8.6 80 48-128 6-95 (253)
348 KOG3350 Uncharacterized conser 85.6 14 0.0003 28.2 10.7 100 19-130 46-148 (217)
349 PRK07035 short chain dehydroge 85.6 7.3 0.00016 30.7 8.5 80 47-127 6-95 (252)
350 PRK06125 short chain dehydroge 85.5 9.8 0.00021 30.1 9.2 79 48-127 6-91 (259)
351 PRK07063 short chain dehydroge 85.4 7.8 0.00017 30.7 8.7 80 47-127 5-96 (260)
352 KOG0919 C-5 cytosine-specific 85.3 0.8 1.7E-05 36.5 2.7 77 49-130 3-82 (338)
353 PRK12475 thiamine/molybdopteri 85.3 4 8.6E-05 34.4 7.0 75 48-123 23-122 (338)
354 PRK09291 short chain dehydroge 85.1 6.8 0.00015 30.8 8.2 77 50-128 3-84 (257)
355 PF11899 DUF3419: Protein of u 85.1 3.8 8.3E-05 35.1 6.9 47 45-92 32-78 (380)
356 PRK06194 hypothetical protein; 85.0 7.9 0.00017 31.2 8.6 80 48-129 5-95 (287)
357 PRK07890 short chain dehydroge 84.9 8.2 0.00018 30.4 8.5 79 48-127 4-92 (258)
358 PRK08340 glucose-1-dehydrogena 84.9 8.2 0.00018 30.6 8.5 75 51-127 2-86 (259)
359 COG1255 Uncharacterized protei 84.9 9.4 0.0002 26.9 7.4 66 48-126 13-80 (129)
360 PRK07677 short chain dehydroge 84.8 7.4 0.00016 30.7 8.2 77 49-126 1-87 (252)
361 KOG1205 Predicted dehydrogenas 84.7 20 0.00043 29.4 10.6 98 47-145 10-121 (282)
362 PRK07097 gluconate 5-dehydroge 84.4 8.8 0.00019 30.5 8.6 82 47-129 8-99 (265)
363 PRK07109 short chain dehydroge 84.4 9 0.00019 32.0 8.9 80 47-127 6-95 (334)
364 PRK05866 short chain dehydroge 84.2 8.3 0.00018 31.5 8.4 79 48-127 39-127 (293)
365 TIGR00571 dam DNA adenine meth 84.2 4.4 9.6E-05 32.8 6.7 41 81-128 143-183 (266)
366 PRK06197 short chain dehydroge 84.2 13 0.00027 30.4 9.6 79 47-127 14-105 (306)
367 PRK07904 short chain dehydroge 84.0 6.7 0.00015 31.2 7.6 80 48-128 7-98 (253)
368 PRK12481 2-deoxy-D-gluconate 3 83.8 8.6 0.00019 30.4 8.2 79 47-128 6-94 (251)
369 PRK07688 thiamine/molybdopteri 83.8 5.3 0.00011 33.7 7.2 75 48-123 23-122 (339)
370 PRK09424 pntA NAD(P) transhydr 83.7 3.4 7.3E-05 36.9 6.2 43 47-90 163-207 (509)
371 PRK08945 putative oxoacyl-(acy 83.7 11 0.00023 29.7 8.6 78 47-126 10-101 (247)
372 PRK07478 short chain dehydroge 83.7 10 0.00022 29.9 8.6 79 48-127 5-93 (254)
373 TIGR01963 PHB_DH 3-hydroxybuty 83.6 12 0.00026 29.3 8.9 76 50-127 2-88 (255)
374 cd08283 FDH_like_1 Glutathione 83.6 3.3 7.1E-05 35.3 6.0 45 46-90 182-228 (386)
375 KOG2782 Putative SAM dependent 83.5 1.8 4E-05 34.0 3.9 61 32-92 27-88 (303)
376 cd01487 E1_ThiF_like E1_ThiF_l 83.4 5.9 0.00013 29.9 6.7 31 51-81 1-33 (174)
377 PRK05872 short chain dehydroge 83.2 11 0.00024 30.7 8.8 80 47-128 7-96 (296)
378 PRK03562 glutathione-regulated 82.8 6.8 0.00015 35.9 8.0 65 50-123 401-470 (621)
379 TIGR02356 adenyl_thiF thiazole 82.6 5.4 0.00012 30.9 6.4 33 48-80 20-54 (202)
380 PRK10669 putative cation:proto 82.3 11 0.00024 34.0 9.1 62 57-124 423-488 (558)
381 PRK06196 oxidoreductase; Provi 81.9 25 0.00054 28.9 10.5 76 47-128 24-110 (315)
382 PRK09880 L-idonate 5-dehydroge 81.8 6.4 0.00014 32.8 7.0 45 45-89 166-212 (343)
383 PRK08277 D-mannonate oxidoredu 81.7 13 0.00027 29.8 8.5 80 47-127 8-97 (278)
384 PRK07814 short chain dehydroge 81.7 13 0.00028 29.6 8.5 79 47-127 8-97 (263)
385 PRK07523 gluconate 5-dehydroge 81.6 13 0.00028 29.3 8.4 80 47-128 8-98 (255)
386 PRK06935 2-deoxy-D-gluconate 3 81.5 13 0.00028 29.4 8.5 80 47-128 13-102 (258)
387 cd00401 AdoHcyase S-adenosyl-L 81.4 5 0.00011 34.8 6.2 60 26-89 182-243 (413)
388 TIGR03206 benzo_BadH 2-hydroxy 81.3 14 0.00029 28.9 8.5 78 48-127 2-90 (250)
389 COG0338 Dam Site-specific DNA 81.3 2.2 4.8E-05 34.8 3.8 43 82-130 145-187 (274)
390 PRK05855 short chain dehydroge 81.3 13 0.00028 33.1 9.2 79 48-128 314-403 (582)
391 PF03446 NAD_binding_2: NAD bi 81.2 6.2 0.00013 29.3 6.0 91 58-166 8-105 (163)
392 PRK12826 3-ketoacyl-(acyl-carr 81.0 15 0.00033 28.5 8.7 80 48-129 5-95 (251)
393 PRK08213 gluconate 5-dehydroge 81.0 15 0.00032 29.1 8.6 79 47-127 10-99 (259)
394 PRK06113 7-alpha-hydroxysteroi 80.8 14 0.00031 29.1 8.5 79 48-127 10-98 (255)
395 PRK15116 sulfur acceptor prote 80.6 15 0.00033 29.9 8.4 35 46-80 27-63 (268)
396 PRK06200 2,3-dihydroxy-2,3-dih 80.3 15 0.00033 29.1 8.5 76 48-127 5-90 (263)
397 COG1062 AdhC Zn-dependent alco 80.2 6.9 0.00015 33.0 6.4 46 45-90 182-229 (366)
398 PRK08643 acetoin reductase; Va 80.1 15 0.00032 28.9 8.3 78 49-128 2-90 (256)
399 PRK06949 short chain dehydroge 79.8 16 0.00035 28.7 8.5 79 47-127 7-96 (258)
400 PRK09242 tropinone reductase; 79.6 16 0.00034 28.9 8.3 81 47-128 7-99 (257)
401 PRK12939 short chain dehydroge 79.4 20 0.00043 28.0 8.8 78 48-127 6-94 (250)
402 cd00755 YgdL_like Family of ac 79.4 9.3 0.0002 30.4 6.7 33 48-80 10-44 (231)
403 PRK13394 3-hydroxybutyrate deh 79.3 16 0.00034 28.8 8.3 79 48-128 6-95 (262)
404 PLN03209 translocon at the inn 79.3 14 0.0003 33.5 8.5 77 48-126 79-168 (576)
405 PRK07454 short chain dehydroge 79.3 18 0.00038 28.2 8.5 79 48-128 5-94 (241)
406 cd01488 Uba3_RUB Ubiquitin act 79.2 13 0.00028 30.6 7.7 71 51-123 1-94 (291)
407 TIGR01832 kduD 2-deoxy-D-gluco 79.2 28 0.00061 27.1 9.7 79 47-128 3-91 (248)
408 PRK09496 trkA potassium transp 79.2 26 0.00055 30.4 10.1 73 48-126 230-306 (453)
409 COG2933 Predicted SAM-dependen 79.0 5.2 0.00011 32.5 5.1 70 47-126 210-279 (358)
410 PRK07533 enoyl-(acyl carrier p 78.6 17 0.00038 28.8 8.3 80 47-128 8-99 (258)
411 PLN02780 ketoreductase/ oxidor 78.5 12 0.00026 31.1 7.5 59 48-107 52-115 (320)
412 cd00757 ThiF_MoeB_HesA_family 78.3 8.1 0.00017 30.5 6.2 73 48-123 20-117 (228)
413 PRK05599 hypothetical protein; 78.2 18 0.00039 28.5 8.2 76 51-128 2-88 (246)
414 PRK13656 trans-2-enoyl-CoA red 78.2 35 0.00077 29.5 10.2 82 48-131 40-145 (398)
415 PRK07231 fabG 3-ketoacyl-(acyl 78.1 20 0.00043 28.0 8.4 78 48-127 4-91 (251)
416 PLN02668 indole-3-acetate carb 78.1 4.1 8.9E-05 35.0 4.6 29 99-130 147-175 (386)
417 PRK07774 short chain dehydroge 77.9 28 0.00061 27.1 9.3 78 48-127 5-93 (250)
418 cd05564 PTS_IIB_chitobiose_lic 77.6 4.4 9.5E-05 27.4 3.9 52 55-126 4-55 (96)
419 PLN02819 lysine-ketoglutarate 77.3 26 0.00057 34.2 10.1 91 48-147 568-673 (1042)
420 PRK05650 short chain dehydroge 77.2 19 0.00042 28.6 8.2 76 51-128 2-88 (270)
421 PRK07576 short chain dehydroge 76.9 23 0.00049 28.2 8.5 77 48-126 8-95 (264)
422 PRK10904 DNA adenine methylase 76.9 5.3 0.00012 32.5 4.9 29 97-128 157-185 (271)
423 TIGR01289 LPOR light-dependent 76.8 41 0.00088 27.7 11.3 79 49-127 3-91 (314)
424 PRK05717 oxidoreductase; Valid 76.7 22 0.00047 28.0 8.3 77 47-128 8-95 (255)
425 PF12692 Methyltransf_17: S-ad 76.7 11 0.00024 27.8 5.8 47 33-80 14-61 (160)
426 PRK14106 murD UDP-N-acetylmura 76.7 18 0.0004 31.4 8.5 73 48-128 4-79 (450)
427 PRK07326 short chain dehydroge 76.6 19 0.00041 27.9 7.9 76 48-126 5-91 (237)
428 PRK08328 hypothetical protein; 76.6 13 0.00028 29.5 6.8 33 48-80 26-60 (231)
429 PRK09072 short chain dehydroge 76.6 21 0.00046 28.2 8.3 79 48-128 4-91 (263)
430 PRK07024 short chain dehydroge 76.6 15 0.00032 29.0 7.4 75 50-127 3-88 (257)
431 PRK06181 short chain dehydroge 76.5 21 0.00046 28.2 8.3 76 50-127 2-88 (263)
432 PRK07792 fabG 3-ketoacyl-(acyl 76.3 21 0.00045 29.3 8.3 81 47-128 10-100 (306)
433 TIGR00561 pntA NAD(P) transhyd 76.3 16 0.00034 32.7 7.9 42 47-89 162-205 (511)
434 PRK07102 short chain dehydroge 76.3 19 0.00041 28.1 7.8 76 50-127 2-86 (243)
435 KOG2013 SMT3/SUMO-activating c 76.2 3.4 7.4E-05 36.3 3.6 76 48-123 11-109 (603)
436 PRK08644 thiamine biosynthesis 76.0 16 0.00035 28.5 7.2 33 48-80 27-61 (212)
437 TIGR00027 mthyl_TIGR00027 meth 75.6 38 0.00082 27.3 9.4 111 33-146 66-187 (260)
438 PRK05565 fabG 3-ketoacyl-(acyl 75.6 34 0.00074 26.5 9.1 79 48-128 4-94 (247)
439 cd08237 ribitol-5-phosphate_DH 75.5 7.9 0.00017 32.3 5.7 44 46-89 161-207 (341)
440 PRK05786 fabG 3-ketoacyl-(acyl 75.3 27 0.00058 27.0 8.4 76 48-126 4-90 (238)
441 cd01489 Uba2_SUMO Ubiquitin ac 75.3 10 0.00022 31.6 6.1 73 51-123 1-96 (312)
442 PRK12429 3-hydroxybutyrate deh 75.0 26 0.00057 27.4 8.4 78 48-127 3-91 (258)
443 TIGR03366 HpnZ_proposed putati 75.0 19 0.00041 29.0 7.7 46 45-90 117-164 (280)
444 PRK08415 enoyl-(acyl carrier p 75.0 42 0.00092 27.0 11.2 79 48-128 4-94 (274)
445 COG4221 Short-chain alcohol de 75.0 26 0.00056 28.1 8.0 79 48-129 5-93 (246)
446 KOG0022 Alcohol dehydrogenase, 75.0 9.4 0.0002 31.9 5.7 45 46-90 190-236 (375)
447 PRK07666 fabG 3-ketoacyl-(acyl 74.9 31 0.00066 26.8 8.7 78 48-127 6-94 (239)
448 PRK08416 7-alpha-hydroxysteroi 74.8 37 0.00079 26.9 9.2 79 47-126 6-96 (260)
449 PRK06138 short chain dehydroge 74.8 26 0.00056 27.3 8.3 78 48-128 4-92 (252)
450 PRK08267 short chain dehydroge 74.7 19 0.00041 28.4 7.5 75 50-128 2-88 (260)
451 PF02153 PDH: Prephenate dehyd 74.4 17 0.00036 29.3 7.1 103 63-183 2-105 (258)
452 cd01491 Ube1_repeat1 Ubiquitin 74.3 20 0.00042 29.6 7.5 71 48-123 18-111 (286)
453 PRK12743 oxidoreductase; Provi 74.0 29 0.00062 27.4 8.4 78 49-128 2-91 (256)
454 COG0300 DltE Short-chain dehyd 73.6 48 0.001 27.0 11.8 83 47-130 4-97 (265)
455 PRK06182 short chain dehydroge 73.2 27 0.00059 27.8 8.1 73 49-129 3-86 (273)
456 PRK07453 protochlorophyllide o 73.1 26 0.00056 28.8 8.2 78 48-127 5-93 (322)
457 PRK08265 short chain dehydroge 73.0 27 0.00058 27.7 8.0 76 48-127 5-90 (261)
458 PRK06198 short chain dehydroge 72.7 33 0.00071 27.0 8.4 80 47-127 4-94 (260)
459 PRK07831 short chain dehydroge 72.7 35 0.00076 26.9 8.6 80 48-128 16-108 (262)
460 COG3392 Adenine-specific DNA m 72.3 2.9 6.2E-05 33.9 2.1 35 46-81 25-59 (330)
461 PRK08703 short chain dehydroge 72.3 31 0.00066 26.8 8.1 79 47-127 4-97 (239)
462 PRK06505 enoyl-(acyl carrier p 72.2 34 0.00073 27.5 8.5 79 48-128 6-96 (271)
463 PRK06701 short chain dehydroge 71.9 30 0.00064 28.1 8.2 80 47-127 44-134 (290)
464 cd01484 E1-2_like Ubiquitin ac 71.9 29 0.00063 27.6 7.8 71 51-123 1-97 (234)
465 PRK06914 short chain dehydroge 71.8 33 0.00071 27.4 8.3 78 49-128 3-92 (280)
466 PRK08251 short chain dehydroge 71.8 32 0.00068 26.8 8.1 78 49-128 2-92 (248)
467 cd01483 E1_enzyme_family Super 71.4 29 0.00062 24.9 7.2 30 51-80 1-32 (143)
468 PRK03369 murD UDP-N-acetylmura 71.2 20 0.00043 31.8 7.4 70 48-129 11-82 (488)
469 KOG1209 1-Acyl dihydroxyaceton 71.1 23 0.00049 28.1 6.7 72 48-125 6-89 (289)
470 PLN02989 cinnamyl-alcohol dehy 70.9 21 0.00046 29.3 7.2 77 48-126 4-86 (325)
471 KOG1099 SAM-dependent methyltr 70.9 8 0.00017 30.8 4.2 83 34-126 26-124 (294)
472 KOG1208 Dehydrogenases with di 70.9 54 0.0012 27.3 9.5 78 47-125 33-122 (314)
473 PRK12829 short chain dehydroge 70.8 38 0.00083 26.6 8.5 78 47-128 9-97 (264)
474 PRK05653 fabG 3-ketoacyl-(acyl 70.8 39 0.00085 26.0 8.4 78 48-127 4-92 (246)
475 TIGR02415 23BDH acetoin reduct 70.7 35 0.00075 26.7 8.1 76 51-128 2-88 (254)
476 PRK12859 3-ketoacyl-(acyl-carr 70.6 48 0.001 26.1 9.0 81 47-128 4-107 (256)
477 PRK08690 enoyl-(acyl carrier p 70.6 33 0.00071 27.3 8.0 80 47-128 4-95 (261)
478 PRK08594 enoyl-(acyl carrier p 70.4 40 0.00086 26.8 8.5 79 47-128 5-98 (257)
479 KOG1098 Putative SAM-dependent 70.1 8.4 0.00018 35.1 4.7 50 32-81 27-79 (780)
480 cd01065 NAD_bind_Shikimate_DH 70.1 38 0.00082 24.4 9.4 72 47-128 17-92 (155)
481 PRK07201 short chain dehydroge 70.0 32 0.00069 31.5 8.7 79 48-128 370-459 (657)
482 PRK12823 benD 1,6-dihydroxycyc 69.9 35 0.00075 26.9 8.0 77 48-126 7-93 (260)
483 PRK08628 short chain dehydroge 69.9 33 0.00072 26.9 7.9 78 47-127 5-93 (258)
484 PRK06484 short chain dehydroge 69.7 68 0.0015 28.3 10.5 76 48-127 4-89 (520)
485 PF02056 Glyco_hydro_4: Family 69.7 27 0.00059 26.7 6.8 67 51-123 1-79 (183)
486 PRK07984 enoyl-(acyl carrier p 69.6 48 0.001 26.5 8.8 79 48-128 5-95 (262)
487 PRK06079 enoyl-(acyl carrier p 69.4 54 0.0012 25.8 9.8 78 47-128 5-94 (252)
488 PLN02427 UDP-apiose/xylose syn 69.4 17 0.00037 30.8 6.5 75 47-122 12-91 (386)
489 PLN02740 Alcohol dehydrogenase 69.3 19 0.00041 30.6 6.7 45 45-89 195-241 (381)
490 PRK06500 short chain dehydroge 68.9 49 0.0011 25.7 8.6 77 48-128 5-91 (249)
491 TIGR03201 dearomat_had 6-hydro 68.7 22 0.00048 29.6 6.9 44 45-89 163-208 (349)
492 PRK08223 hypothetical protein; 68.4 18 0.00038 29.8 6.0 75 48-123 26-123 (287)
493 PRK05600 thiamine biosynthesis 68.3 20 0.00043 30.7 6.5 34 47-80 39-74 (370)
494 PLN02896 cinnamyl-alcohol dehy 68.2 33 0.00071 28.7 7.8 78 46-126 7-88 (353)
495 PRK05597 molybdopterin biosynt 68.0 22 0.00048 30.1 6.7 73 48-123 27-124 (355)
496 COG0771 MurD UDP-N-acetylmuram 68.0 17 0.00036 32.0 6.0 74 49-130 7-82 (448)
497 PRK07417 arogenate dehydrogena 67.8 55 0.0012 26.5 8.9 38 51-89 2-41 (279)
498 TIGR02818 adh_III_F_hyde S-(hy 67.8 24 0.00052 29.7 7.0 45 46-90 183-229 (368)
499 PF03514 GRAS: GRAS domain fam 67.2 80 0.0017 27.0 11.7 80 48-127 110-208 (374)
500 PLN02253 xanthoxin dehydrogena 67.1 42 0.00091 26.8 8.1 77 48-127 17-104 (280)
No 1
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-31 Score=195.37 Aligned_cols=196 Identities=41% Similarity=0.711 Sum_probs=177.1
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHH
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD 82 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~ 82 (216)
|+.|+..++.+..|.++....+||+|+.++++.++..+... .+..+++|+|+|||||.+++.++-.|+..|+|+|+|++
T Consensus 1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~ 79 (198)
T COG2263 1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE 79 (198)
T ss_pred CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence 57889999999999999999999999999999999998744 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHH
Q 027945 83 SLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHV 162 (216)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (216)
+++.++.|+...+.+++++.+|+.++.. . +|.++.||||+...+..+.+|+..+++... .+|.+++.++++++
T Consensus 80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~---~---~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-vVYsiH~a~~~~f~ 152 (198)
T COG2263 80 ALEIARANAEELLGDVEFVVADVSDFRG---K---FDTVIMNPPFGSQRRHADRPFLLKALEISD-VVYSIHKAGSRDFV 152 (198)
T ss_pred HHHHHHHHHHhhCCceEEEEcchhhcCC---c---cceEEECCCCccccccCCHHHHHHHHHhhh-eEEEeeccccHHHH
Confidence 9999999999866689999999987644 3 999999999999999999999999999987 99999999999999
Q ss_pred HHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEe
Q 027945 163 KKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP 208 (216)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (216)
...+ +.++ ..........|.+|..+.+|.+....+.+.+|++.+
T Consensus 153 ~~~~-~~~G-~~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k 196 (198)
T COG2263 153 EKFA-ADLG-GTVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEK 196 (198)
T ss_pred HHHH-HhcC-CeEEEEEEEEEecCccCchhhheeeeeeEEEEEEEe
Confidence 9988 5444 345555567789999999999999999999999975
No 2
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.4e-30 Score=182.24 Aligned_cols=185 Identities=58% Similarity=0.970 Sum_probs=170.4
Q ss_pred CchhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCC
Q 027945 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID 80 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~ 80 (216)
|+-++++.-+.+++.|.++....+||||++++++.|+..+-.-+....+++++|+|||+|-++...+..+...|+|+|++
T Consensus 1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId 80 (185)
T KOG3420|consen 1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID 80 (185)
T ss_pred CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence 67789999999999999999999999999999999999998888889999999999999999988887778899999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHH
Q 027945 81 SDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE 160 (216)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 160 (216)
|++++.+..|+....+++++.++|..+..+..+. ||.++.||||++...+.+.++++.+++... .+|.++++.+++
T Consensus 81 peALEIf~rNaeEfEvqidlLqcdildle~~~g~---fDtaviNppFGTk~~~aDm~fv~~al~~~~-~VySLHKtSTRe 156 (185)
T KOG3420|consen 81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGI---FDTAVINPPFGTKKKGADMEFVSAALKVAS-AVYSLHKTSTRE 156 (185)
T ss_pred HHHHHHHhhchHHhhhhhheeeeeccchhccCCe---EeeEEecCCCCcccccccHHHHHHHHHHHH-HHHHHhcccHHH
Confidence 9999999999999888899999999987766555 999999999999999999999999999888 999999999988
Q ss_pred HHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEee
Q 027945 161 HVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK 209 (216)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (216)
|+ +++|..++||+++..++-|.+|||+++
T Consensus 157 y~--------------------~kLP~~ykFHK~k~vdiaVDlirfe~r 185 (185)
T KOG3420|consen 157 YR--------------------YKLPKLYKFHKRKEVDIAVDLIRFEPR 185 (185)
T ss_pred HH--------------------HhcchhhhhhhccccceeeeEEEeecC
Confidence 77 347999999999999999999999863
No 3
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-17 Score=142.71 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=114.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
|.+.+...+.|+.++..++...++.++||++||.|.+++.+|.. ..+|+|+|+++.+++.|+.|++.|+. ++++..+|
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ 349 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD 349 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 55678899999999998877778899999999999999999974 55999999999999999999999999 79999999
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR 159 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 159 (216)
+.++.........+|.|+.||| +.+.+..+++.+.+..+ ..+|++|||.|.
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPATL 401 (432)
T ss_pred HHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence 9998776521224999999999 99999999999999887 689999999983
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=127.77 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~ 108 (216)
..+.+|.... ......+|||+|||+|.+++.++++ ...+++++|+++.++++|++|++.|++ +++++++|+.++
T Consensus 31 ~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 31 TDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred cHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence 3444444433 2334779999999999999999987 557999999999999999999999988 899999999998
Q ss_pred cccccCCCcccEEEEcCCCCCCCCC----------------CCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHH
Q 027945 109 EWRVCSVGHVDTVVMNPPFGTRKKG----------------VDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp~~~~~~~----------------~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 166 (216)
.... ...+||+|+|||||+..... ....+++.+....+ |.+++++.+.....+.+.+
T Consensus 108 ~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l 182 (248)
T COG4123 108 LKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELL 182 (248)
T ss_pred hhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHH
Confidence 7665 22359999999999887332 22355565555554 5777777777766666665
No 5
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.75 E-value=8.4e-17 Score=121.44 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=115.2
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~ 100 (216)
..-+||+..+-+.+.+++... ...+.++||+++|||.++++.+++|+.+++.+|.|..++..+++|++..+. ++++
T Consensus 20 ~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~ 97 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV 97 (187)
T ss_pred CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence 345888877777777666431 368899999999999999999999999999999999999999999999985 7899
Q ss_pred EEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEE
Q 027945 101 VQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180 (216)
Q Consensus 101 ~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (216)
+..|+..+.........||+|+.||||+.. .....+. +..... ...|. +++..++|
T Consensus 98 ~~~da~~~L~~~~~~~~FDlVflDPPy~~~---l~~~~~~-~~~~~~-------------------~~~L~-~~~~iv~E 153 (187)
T COG0742 98 LRNDALRALKQLGTREPFDLVFLDPPYAKG---LLDKELA-LLLLEE-------------------NGWLK-PGALIVVE 153 (187)
T ss_pred EeecHHHHHHhcCCCCcccEEEeCCCCccc---hhhHHHH-HHHHHh-------------------cCCcC-CCcEEEEE
Confidence 999998654443232349999999999833 1111111 111000 02233 67777777
Q ss_pred Eee-----cCCccccccc-eeeeeEEEEEEEEE
Q 027945 181 LRY-----DVPQLYKFHK-KKEVDIAVDLWRFV 207 (216)
Q Consensus 181 ~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~ 207 (216)
+.- ..+..|..++ ++++.+.+++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~~ 186 (187)
T COG0742 154 HDKDVELPELPANFELHREKKYGQTKLTFYRRE 186 (187)
T ss_pred eCCCcCccccCCCeEEEEEeecCCEEEEEEEec
Confidence 773 2356676544 66699999999874
No 6
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.75 E-value=4e-17 Score=124.75 Aligned_cols=156 Identities=17% Similarity=0.307 Sum_probs=106.6
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~ 100 (216)
...+||+..+-+.+.+.+... ...+.++||++||||.++++..++|+.+|+.+|.|+.+++.+++|++..+. ++++
T Consensus 19 ~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v 96 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRV 96 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEE
T ss_pred CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceee
Confidence 455899988888887777654 258899999999999999999999999999999999999999999999887 5899
Q ss_pred EEcccccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEE
Q 027945 101 VQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC 179 (216)
Q Consensus 101 ~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (216)
+..|+....... ....+||+|++||||..... ....+..+.+ ...+. +++.++.
T Consensus 97 ~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~----------------------~~~l~-~~~~ii~ 151 (183)
T PF03602_consen 97 IKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAE----------------------NNLLN-EDGLIII 151 (183)
T ss_dssp EESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHH----------------------TTSEE-EEEEEEE
T ss_pred eccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHH----------------------CCCCC-CCEEEEE
Confidence 999987765332 12235999999999986521 1222222221 02233 6788888
Q ss_pred EEeec--CC---ccccc-cceeeeeEEEEEEE
Q 027945 180 ELRYD--VP---QLYKF-HKKKEVDIAVDLWR 205 (216)
Q Consensus 180 ~~~~~--~~---~~~~~-~~~~~~~~~~~~~~ 205 (216)
|+... ++ ..|.. ..++++.+.+.+|+
T Consensus 152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 88643 33 34533 45678999999986
No 7
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.73 E-value=9.5e-17 Score=124.12 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=79.9
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc
Q 027945 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (216)
Q Consensus 25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~ 103 (216)
..|+...+...++..+... .++.++||+|||+|.+++.++++++.+|+++|+++.+++.++.|++.++. +++++++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT 109 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3667766666666665432 35679999999999999987666777999999999999999999999887 7999999
Q ss_pred ccccccccccCCCcccEEEEcCCCCC
Q 027945 104 DIRNLEWRVCSVGHVDTVVMNPPFGT 129 (216)
Q Consensus 104 d~~~~~~~~~~~~~fD~v~~npp~~~ 129 (216)
|+.+..... ..+||+|++||||..
T Consensus 110 D~~~~l~~~--~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 110 NALSFLAQP--GTPHNVVFVDPPFRK 133 (199)
T ss_pred hHHHHHhhc--CCCceEEEECCCCCC
Confidence 998754321 124999999999864
No 8
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.72 E-value=4.5e-16 Score=117.96 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEccccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLE 109 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~ 109 (216)
..+.+|...+... ++.++||+|||+|.+++.+++.+.. +|+++|+++.+++.++.|++.++.. ++++..|+.+..
T Consensus 18 ~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~ 94 (170)
T PF05175_consen 18 AGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred HHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence 4454555544431 6779999999999999999987643 7999999999999999999999985 999999998865
Q ss_pred ccccCCCcccEEEEcCCCCCCCC---CCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945 110 WRVCSVGHVDTVVMNPPFGTRKK---GVDMDFLSMALKVAS--QAVYSLHKTS 157 (216)
Q Consensus 110 ~~~~~~~~fD~v~~npp~~~~~~---~~~~~~l~~~~~~~~--~~~~~~~~~~ 157 (216)
... . ||+|++|||++.... .....+++.+.+.+. |.++++.+..
T Consensus 95 ~~~-~---fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 95 PDG-K---FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp CTT-C---EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ccc-c---eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 522 4 999999999876632 122456666666654 3555555543
No 9
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=9.5e-17 Score=130.50 Aligned_cols=148 Identities=21% Similarity=0.243 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (216)
|......++..++........ +|||+|||||.+++.++... ..+|+++|+|+.+++.|+.|++.+++ ++.++++|++
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc
Confidence 333444455444322122222 79999999999999999764 45999999999999999999999996 6677777887
Q ss_pred cccccccCCCcccEEEEcCCCCCCC-CCCCHHHHH-HHHhh-cCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEEee
Q 027945 107 NLEWRVCSVGHVDTVVMNPPFGTRK-KGVDMDFLS-MALKV-ASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY 183 (216)
Q Consensus 107 ~~~~~~~~~~~fD~v~~npp~~~~~-~~~~~~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (216)
+.... . ||+|++||||.... ......... +-... ..+. ....--..+...+.+.++ +++.++.+.++
T Consensus 171 ~~~~~--~---fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l~-~~g~l~le~g~ 240 (280)
T COG2890 171 EPLRG--K---FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDILK-PGGVLILEIGL 240 (280)
T ss_pred cccCC--c---eeEEEeCCCCCCCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHcC-CCcEEEEEECC
Confidence 75554 3 99999999998774 111111111 11110 0100 011123445555657777 78899999987
Q ss_pred cCCc
Q 027945 184 DVPQ 187 (216)
Q Consensus 184 ~~~~ 187 (216)
...+
T Consensus 241 ~q~~ 244 (280)
T COG2890 241 TQGE 244 (280)
T ss_pred CcHH
Confidence 5543
No 10
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.72 E-value=1.9e-16 Score=131.19 Aligned_cols=127 Identities=24% Similarity=0.429 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
|+++....+.++..+...+...++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++|++.+++ +++++++|
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D 229 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD 229 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence 456667777777666555444466899999999999999999976 5999999999999999999999988 79999999
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR 159 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 159 (216)
+.++.... .++||+|++||| +.+.....++.+.+..+ ..+|++|+|.+.
T Consensus 230 ~~~~~~~~--~~~~D~Vv~dPP----r~G~~~~~~~~l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 230 STQFATAQ--GEVPDLVLVNPP----RRGIGKELCDYLSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred HHHHHHhc--CCCCeEEEECCC----CCCccHHHHHHHHHcCCCeEEEEECCcccc
Confidence 98765321 124999999999 44555555555555443 699999999983
No 11
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.71 E-value=2.5e-16 Score=133.26 Aligned_cols=126 Identities=23% Similarity=0.398 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
|.++....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|++.++. +++++.+|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 556677777777666554433456799999999999999999865 5999999999999999999999988 79999999
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 158 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 158 (216)
+.++.... ..+||+|++|||+ .+.....++.+....+ ..+|++|+|.+
T Consensus 290 ~~~~~~~~--~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 290 SAKFATAQ--MSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNAQT 338 (374)
T ss_pred HHHHHHhc--CCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCHHH
Confidence 98765322 1239999999995 4666777777776654 69999999988
No 12
>PHA03412 putative methyltransferase; Provisional
Probab=99.70 E-value=3.7e-16 Score=122.29 Aligned_cols=121 Identities=20% Similarity=0.353 Sum_probs=90.6
Q ss_pred CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL 94 (216)
Q Consensus 19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (216)
...+.++|.||..++..+..+. ..+.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|+.|..
T Consensus 26 ~~~~~GqFfTP~~iAr~~~i~~------~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 26 NNSELGAFFTPIGLARDFTIDA------CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred ccccCCccCCCHHHHHHHHHhc------cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--
Confidence 3567889999999988775331 23579999999999999999864 24589999999999999998864
Q ss_pred CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCC----------CHHHHHHHHhhcCCcEEEE
Q 027945 95 ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV----------DMDFLSMALKVASQAVYSL 153 (216)
Q Consensus 95 ~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~----------~~~~l~~~~~~~~~~~~~~ 153 (216)
++.++++|+...... .+ ||+||+||||....... ...++..+.+.++++.+++
T Consensus 98 --~~~~~~~D~~~~~~~-~~---FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 98 --EATWINADALTTEFD-TL---FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred --CCEEEEcchhccccc-CC---ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 478999999865442 24 99999999999763111 1246667667666544433
No 13
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=133.99 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
|....+.++..+...+ .++.++||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|++.++.+++++++|+.+
T Consensus 234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 4445555665555442 24569999999999999999864 56699999999999999999999888789999999976
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHH---HHHHHHhhhcCCccceEEEEEeec
Q 027945 108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE---HVKKAALRDFNASSAEVLCELRYD 184 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 184 (216)
..... .++||+|++||||...... .......+..+ ...+.-...+.+ .+...+.+.|+ ++|.++.|+++.
T Consensus 312 ~~l~~--~~~FDLIVSNPPYI~~~e~---~l~~~~v~~EP-~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEiG~~ 384 (423)
T PRK14966 312 TDMPS--EGKWDIIVSNPPYIENGDK---HLLQGDLRFEP-QIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEHGFD 384 (423)
T ss_pred ccccc--CCCccEEEECCCCCCcchh---hhcchhhhcCH-HHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEECcc
Confidence 43221 1249999999999865321 11111111111 111111122222 34444446777 888999999886
Q ss_pred CCc
Q 027945 185 VPQ 187 (216)
Q Consensus 185 ~~~ 187 (216)
.++
T Consensus 385 Q~e 387 (423)
T PRK14966 385 QGA 387 (423)
T ss_pred HHH
Confidence 544
No 14
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.70 E-value=9e-16 Score=118.09 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=81.9
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~ 100 (216)
...+||...+-+.+.+.+... ..+.++||++||+|.++++++++|+.+|+++|.++.+++.+++|++.++. ++++
T Consensus 27 ~~~rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 27 GSTRPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCCCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence 345777766666555554322 46789999999999999999999988999999999999999999999987 5899
Q ss_pred EEcccccccccccCC-CcccEEEEcCCCCC
Q 027945 101 VQCDIRNLEWRVCSV-GHVDTVVMNPPFGT 129 (216)
Q Consensus 101 ~~~d~~~~~~~~~~~-~~fD~v~~npp~~~ 129 (216)
+.+|+.+........ ..||+|+.||||..
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCC
Confidence 999997754321111 13899999999974
No 15
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.70 E-value=3.4e-16 Score=135.37 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (216)
Q Consensus 27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~ 105 (216)
..+...+..++..++..+...++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|+.|++.++. +++++++|+
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~ 354 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL 354 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence 34555667777777766555677899999999999999999865 5999999999999999999999887 799999999
Q ss_pred ccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945 106 RNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 158 (216)
Q Consensus 106 ~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 158 (216)
.+..... -...+||+|++|||+... ...++.+.+..+ ..+|++|+|.+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~~~~~~ivyvSCnp~t 404 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRAGA-----AEVMQALAKLGPKRIVYVSCNPAT 404 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCcCh-----HHHHHHHHhcCCCeEEEEEeChHH
Confidence 7653210 011249999999997642 244555555443 69999999988
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.68 E-value=2.2e-15 Score=124.05 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=110.0
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHH-hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAE-NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~-~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~ 81 (216)
+++|+..+.++..|+++....+++.|+.++++.++...+ ..+...++++|||+|||+|.++..++..++..|+|+|+++
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~ 154 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV 154 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 678999999999999999999999999999999997744 4445678899999999999999999988877899999999
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 82 DSLELASENAADL--ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 82 ~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++.+++...+.. ..++.+..+++.+.+... . ||+|++.-.+++.. .....++++.+.++
T Consensus 155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~-~---FD~V~s~gvL~H~~--dp~~~L~el~r~Lk 216 (314)
T TIGR00452 155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY-A---FDTVFSMGVLYHRK--SPLEHLKQLKHQLV 216 (314)
T ss_pred HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC-C---cCEEEEcchhhccC--CHHHHHHHHHHhcC
Confidence 9987754432221 125778888887776543 4 99999987776652 33456777776654
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=1.6e-15 Score=123.85 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhh-cCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945 32 IASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (216)
Q Consensus 32 ~~~~~l~~~~~~-~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (216)
....++...+.. +...++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.+++ +++++++|+.+
T Consensus 104 ~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 104 PIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred chHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 444444444432 22234578999999999999999976 345999999999999999999999887 58999999876
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCC--CHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEe
Q 027945 108 LEWRVCSVGHVDTVVMNPPFGTRKKGV--DMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELR 182 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 182 (216)
.... .. ||+|++||||....... ...+..+... .++ -...+ ...+...+.+.|+ ++|.++.+++
T Consensus 184 ~~~~-~~---fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~----al~--gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g 252 (284)
T TIGR03533 184 ALPG-RK---YDLIVSNPPYVDAEDMADLPAEYHHEPEL----ALA--SGEDGLDLVRRILAEAADHLN-ENGVLVVEVG 252 (284)
T ss_pred ccCC-CC---ccEEEECCCCCCccchhhCCHhhhcCHHH----Hhc--CCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 4322 23 99999999998653211 1111100000 000 01111 1234444547777 8889998888
Q ss_pred ecC
Q 027945 183 YDV 185 (216)
Q Consensus 183 ~~~ 185 (216)
+..
T Consensus 253 ~~~ 255 (284)
T TIGR03533 253 NSM 255 (284)
T ss_pred cCH
Confidence 644
No 18
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.67 E-value=1.1e-15 Score=128.75 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (216)
Q Consensus 27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~ 105 (216)
.......+.++..+...+... +.++||++||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++ +++++.+|+
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~ 263 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA 263 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence 345566777777776654322 357999999999999988884 56999999999999999999999988 799999999
Q ss_pred ccccccccC-------------CCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 106 RNLEWRVCS-------------VGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 106 ~~~~~~~~~-------------~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
.++...... ..+||+|++|||+ .+.....++.+.+ .+..+|++|+|.+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~-~~~ivyvSC~p~t 324 (362)
T PRK05031 264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQA-YERILYISCNPET 324 (362)
T ss_pred HHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHc-cCCEEEEEeCHHH
Confidence 875432100 1249999999994 5667777777766 3569999999966
No 19
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.67 E-value=6e-16 Score=109.87 Aligned_cols=98 Identities=35% Similarity=0.533 Sum_probs=75.3
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
|.+|||+|||+|.+++.+++.+..+++++|+|+.+++.++.++..++. +++++++|+.+..... ..++||+|++|||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-PDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-TTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-cCceeEEEEECCC
Confidence 458999999999999999988756999999999999999999999877 7999999998876222 2235999999999
Q ss_pred CCCCCC------CCCHHHHHHHHhhcC
Q 027945 127 FGTRKK------GVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~------~~~~~~l~~~~~~~~ 147 (216)
|..... .....+++.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~ 106 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLK 106 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcC
Confidence 986421 122355666655544
No 20
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.67 E-value=7.5e-16 Score=129.28 Aligned_cols=126 Identities=23% Similarity=0.395 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
|.........|+..+...+...++ ++||++||+|.+++.+|+. ..+|+|+|+++.+++.|+.|++.|++ +++++.++
T Consensus 175 fQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 345577888888888887665555 8999999999999999985 55999999999999999999999999 89999988
Q ss_pred cccccccc-------------cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 105 IRNLEWRV-------------CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 105 ~~~~~~~~-------------~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
+.++.... ....++|+|+.||| +.+.....++.+.+. ...+|++|+|.+
T Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~-~~ivYvSCnP~t 314 (352)
T PF05958_consen 253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKKL-KRIVYVSCNPAT 314 (352)
T ss_dssp SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHHS-SEEEEEES-HHH
T ss_pred ccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhcC-CeEEEEECCHHH
Confidence 76543211 01124899999999 999998888876554 569999999988
No 21
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=3.2e-15 Score=123.25 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=86.6
Q ss_pred CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.++. +++++++|+.+.... .. ||+|++|||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~-~~---fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPG-RR---YDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCC-CC---ccEEEECCC
Confidence 68999999999999999975 456999999999999999999998886 599999998764332 24 999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEeec
Q 027945 127 FGTRKKGVDMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYD 184 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 184 (216)
|....... .+.......+ ...+.-...+ ...+...+.+.|+ ++|.++.++++.
T Consensus 211 yi~~~~~~---~l~~~~~~eP-~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g~~ 266 (307)
T PRK11805 211 YVDAEDMA---DLPAEYRHEP-ELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVVEVGNS 266 (307)
T ss_pred CCCccchh---hcCHhhccCc-cceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEEEECcC
Confidence 97653211 1111111111 1111111112 1234444546777 888888888864
No 22
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.66 E-value=9.4e-16 Score=134.19 Aligned_cols=176 Identities=15% Similarity=0.204 Sum_probs=109.2
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcC------------------------CCCCCEEEEecCC
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG------------------------DVSNKVVADFGCG 58 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~------------------------~~~~~~vLD~g~G 58 (216)
+..|+.++...+.+-........-..|...++.++..++..+. ..++.+|||+|||
T Consensus 69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G 148 (506)
T PRK01544 69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG 148 (506)
T ss_pred CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence 4556777776666655544444434444445555554443221 1134689999999
Q ss_pred cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCC
Q 027945 59 CGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVD 135 (216)
Q Consensus 59 ~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~ 135 (216)
+|.+++.+++. +..+|+++|+|+.+++.|+.|+..+++ +++++++|+.+.... ++||+|++||||........
T Consensus 149 sG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~----~~fDlIvsNPPYi~~~~~~~ 224 (506)
T PRK01544 149 SGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEK----QKFDFIVSNPPYISHSEKSE 224 (506)
T ss_pred hhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcC----CCccEEEECCCCCCchhhhh
Confidence 99999998864 556999999999999999999998876 689999998764322 23999999999987632111
Q ss_pred HHHHHHHHhhcCCcEEEEecCccHH---HHHHHHhhhcCCccceEEEEEeecCC
Q 027945 136 MDFLSMALKVASQAVYSLHKTSTRE---HVKKAALRDFNASSAEVLCELRYDVP 186 (216)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 186 (216)
. ..+..+..+ ...+.-...+.+ .+...+.+.|+ ++|.++.+.++..+
T Consensus 225 l--~~~v~~~EP-~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lEig~~q~ 274 (506)
T PRK01544 225 M--AIETINYEP-SIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILEIGFKQE 274 (506)
T ss_pred c--CchhhccCc-HHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEEECCchH
Confidence 0 001111111 111111122222 24444546666 77888888776544
No 23
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.66 E-value=1e-14 Score=117.15 Aligned_cols=124 Identities=25% Similarity=0.239 Sum_probs=83.8
Q ss_pred hhhHHHHHhccCCCCCCc-cccccCCCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeC
Q 027945 3 LKQLESVLGDLEQFSNPK-VELEQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDI 79 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~ 79 (216)
+..|+.++...+.+.... .....| .+...+..++..++..+.. ..+.+|||+|||+|.+++.+++. +..+|+++|+
T Consensus 40 ~~Pl~yi~g~~~f~g~~~~v~~~vf-~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi 118 (251)
T TIGR03704 40 GLPLEHVLGWAEFCGLRIAVDPGVF-VPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADI 118 (251)
T ss_pred CCCHHHhcccCeEcCeEEEECCCCc-CCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC
Confidence 456677777544432211 111112 2333455555555443332 23458999999999999999864 4458999999
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 80 DSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
|+.+++.|+.|++.++ .+++++|+.+..... ..++||+|++||||...
T Consensus 119 s~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 119 DPAAVRCARRNLADAG--GTVHEGDLYDALPTA-LRGRVDILAANAPYVPT 166 (251)
T ss_pred CHHHHHHHHHHHHHcC--CEEEEeechhhcchh-cCCCEeEEEECCCCCCc
Confidence 9999999999998876 578999987654321 12349999999999754
No 24
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.5e-15 Score=119.43 Aligned_cols=106 Identities=20% Similarity=0.331 Sum_probs=84.3
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
....+.+|||+|||.|.+++.+++.. ..+++.+|+|..+++.++.|+..|+.. .+++.+|..+-... + ||+|+
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~--k---fd~Ii 229 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG--K---FDLII 229 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc--c---ccEEE
Confidence 33344599999999999999999874 679999999999999999999999884 37888888876554 3 99999
Q ss_pred EcCCCCCCCCCCC---HHHHHHHHhhcC--CcEEEEec
Q 027945 123 MNPPFGTRKKGVD---MDFLSMALKVAS--QAVYSLHK 155 (216)
Q Consensus 123 ~npp~~~~~~~~~---~~~l~~~~~~~~--~~~~~~~~ 155 (216)
+|||||.-..-.. .+++..+.+.+. |.++++.+
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999996632222 256677766653 68888877
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.65 E-value=1.3e-14 Score=110.95 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=68.6
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.|++.++.+++++.+|+.+.... + ||+|++|||
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--~---fD~Vi~n~p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRG--K---FDVILFNPP 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCC--c---ccEEEECCC
Confidence 3557899999999999999998776 999999999999999999998887889999998775432 4 999999999
Q ss_pred CCCC
Q 027945 127 FGTR 130 (216)
Q Consensus 127 ~~~~ 130 (216)
|+..
T Consensus 92 ~~~~ 95 (179)
T TIGR00537 92 YLPL 95 (179)
T ss_pred CCCC
Confidence 9866
No 26
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.65 E-value=1.9e-15 Score=123.60 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=86.9
Q ss_pred CEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.+|||+|||+|.+++.++... ..+|+++|+++.+++.|+.|++.++. +++++++|+.+..... . ||+|++|||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~-~---fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQ-K---IDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCC-C---ccEEEECCC
Confidence 689999999999999999753 46999999999999999999998887 3999999998743322 3 999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEeecCC
Q 027945 127 FGTRKKGVDMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYDVP 186 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 186 (216)
|....... .+.......+ ...+.-...+ ...+...+.+.|+ ++|.++.++++...
T Consensus 192 yi~~~~~~---~~~~~~~~eP-~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 192 YIDEEDLA---DLPNVVRFEP-LLALVGGDDGLNILRQIIELAPDYLK-PNGFLVCEIGNWQQ 249 (284)
T ss_pred CCCcchhh---cCCcccccCc-HHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEECccHH
Confidence 98653211 0111111001 0000001111 2334444546776 88888888886543
No 27
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.63 E-value=4.4e-15 Score=123.83 Aligned_cols=98 Identities=28% Similarity=0.291 Sum_probs=78.0
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
...++.+|||+|||+|.+++.++..+. +++|+|+|+.+++.++.|++.++. ++.+.++|+.+.+..... ||+|++
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~---~D~Iv~ 254 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES---VDAIAT 254 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC---CCEEEE
Confidence 345778999999999999999887654 999999999999999999998887 678999999987665434 999999
Q ss_pred cCCCCCCCCC--C-----CHHHHHHHHhhc
Q 027945 124 NPPFGTRKKG--V-----DMDFLSMALKVA 146 (216)
Q Consensus 124 npp~~~~~~~--~-----~~~~l~~~~~~~ 146 (216)
||||+..... . ...+++.+.+.+
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~L 284 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVL 284 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHc
Confidence 9999875211 1 234555555554
No 28
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.63 E-value=6e-15 Score=123.90 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (216)
......+.++..+...... .+.++||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+++ +++++.+|+.
T Consensus 178 ~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 3455667777777665332 2347999999999999999885 45999999999999999999999988 7999999998
Q ss_pred cccccc---------c----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 107 NLEWRV---------C----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 107 ~~~~~~---------~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
++.... . ...+||+|++||| +.+.....++.+.+ .+..+|++|+|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~-~~~ivYvsC~p~t 315 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQA-YERILYISCNPET 315 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHc-CCcEEEEEcCHHH
Confidence 754321 0 0113899999999 67777778787766 4579999999987
No 29
>PRK14967 putative methyltransferase; Provisional
Probab=99.63 E-value=1.4e-14 Score=114.57 Aligned_cols=92 Identities=30% Similarity=0.339 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC
Q 027945 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS 114 (216)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (216)
.++...+......++.+|||+|||+|.+++.+++.+..+++++|+++.+++.++.|++.++.+++++++|+.+... ...
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~-~~~ 101 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE-FRP 101 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc-CCC
Confidence 3444444433445678999999999999999998766699999999999999999999888788899999876432 224
Q ss_pred CCcccEEEEcCCCCCC
Q 027945 115 VGHVDTVVMNPPFGTR 130 (216)
Q Consensus 115 ~~~fD~v~~npp~~~~ 130 (216)
||+|++||||...
T Consensus 102 ---fD~Vi~npPy~~~ 114 (223)
T PRK14967 102 ---FDVVVSNPPYVPA 114 (223)
T ss_pred ---eeEEEECCCCCCC
Confidence 9999999999765
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=2.5e-14 Score=109.40 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=104.2
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945 17 SNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE 95 (216)
Q Consensus 17 ~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (216)
.++.....+..+++++........+......++.+|||+|||+|.+++.++..+ ..+|+++|+++.+++.++.+++.++
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~ 90 (181)
T TIGR00138 11 WNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG 90 (181)
T ss_pred HhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence 344556666666666655555444333234568899999999999999988653 5689999999999999999999888
Q ss_pred C-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHHhhhcCC
Q 027945 96 L-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAALRDFNA 172 (216)
Q Consensus 96 ~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (216)
. +++++++|+.+... ... ||+|+++. ++. ....++.+.+.++ +.+++...+.....+.... +.+..
T Consensus 91 ~~~i~~i~~d~~~~~~-~~~---fD~I~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~-e~~~~ 159 (181)
T TIGR00138 91 LNNVEIVNGRAEDFQH-EEQ---FDVITSRA-LAS-----LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK-RKCQV 159 (181)
T ss_pred CCCeEEEecchhhccc-cCC---ccEEEehh-hhC-----HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH-Hhhhh
Confidence 7 79999999988632 224 99999986 321 2244555555443 3555555555555555544 32222
Q ss_pred ccceEEEEEeecCC
Q 027945 173 SSAEVLCELRYDVP 186 (216)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (216)
.+.+.+..-.+..|
T Consensus 160 ~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 160 LGVEPLEVPPLTGP 173 (181)
T ss_pred cCceEeeccccCCC
Confidence 45555544444444
No 31
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.62 E-value=7.8e-15 Score=126.62 Aligned_cols=127 Identities=20% Similarity=0.330 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (216)
..+.....++..+...+...++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|+.|++.++. +++++.+|+.
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 445566666666666544456689999999999999999985 45999999999999999999999988 7999999997
Q ss_pred cccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945 107 NLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR 159 (216)
Q Consensus 107 ~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 159 (216)
+..... ....+||+|++||| +.+....+++.+.+..+ +.+|++|+|.+.
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPP----r~G~~~~~l~~l~~l~~~~ivyvsc~p~tl 401 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPP----RKGCAAEVLRTIIELKPERIVYVSCNPATL 401 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcC----CCCCCHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 743221 01124999999999 45666777776665544 588999998874
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=9.8e-14 Score=106.45 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=106.7
Q ss_pred hHHHHHhccCCCCCCccccccCCCCHH-HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHH
Q 027945 5 QLESVLGDLEQFSNPKVELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSD 82 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~ 82 (216)
|++.++.-+..|...- ....-++.+. +...++......-...++.+|||+|||+|..++.+++. +..+|+++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~ 80 (187)
T PRK00107 2 QLEAYVELLVKWNKKY-NLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK 80 (187)
T ss_pred hHHHHHHHHHHhcccc-cccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH
Confidence 4555666555553322 2222333333 44444444433212234789999999999999999863 5569999999999
Q ss_pred HHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-C-cEEEEecCccH
Q 027945 83 SLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-Q-AVYSLHKTSTR 159 (216)
Q Consensus 83 ~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~ 159 (216)
+++.|+++++.++. +++++++|+.+... ..+ ||+|+++.- .....+++.+.+..+ + .+++...+...
T Consensus 81 ~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~---fDlV~~~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~ 150 (187)
T PRK00107 81 KIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEK---FDVVTSRAV------ASLSDLVELCLPLLKPGGRFLALKGRDPE 150 (187)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCC---ccEEEEccc------cCHHHHHHHHHHhcCCCeEEEEEeCCChH
Confidence 99999999999887 69999999988655 334 999999741 223466777776654 3 44444444444
Q ss_pred HHHHHHHhhhcCCccceEEEEEeecCCc
Q 027945 160 EHVKKAALRDFNASSAEVLCELRYDVPQ 187 (216)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 187 (216)
..+.... +.+ +..+.....|.+|.
T Consensus 151 ~~l~~~~-~~~---~~~~~~~~~~~~~~ 174 (187)
T PRK00107 151 EEIAELP-KAL---GGKVEEVIELTLPG 174 (187)
T ss_pred HHHHHHH-Hhc---CceEeeeEEEecCC
Confidence 5555444 433 33333334455543
No 33
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.5e-14 Score=114.00 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=97.8
Q ss_pred hHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHH
Q 027945 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDS 83 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~ 83 (216)
.+.+..+.+...+.---..-.+.....|-..+...+. ..+|.+|||+|||||.+++.+++. |.++|+++|+|+.|
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M 87 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence 3444544444433222222233334444444444432 237899999999999999999976 56799999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945 84 LELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ 148 (216)
Q Consensus 84 ~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~ 148 (216)
++.|++.+...+. +++++++|++++++++.+ ||+|.+. |....-......|+++.+.+++
T Consensus 88 L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s---FD~vt~~--fglrnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 88 LEVAREKLKKKGVQNVEFVVGDAENLPFPDNS---FDAVTIS--FGLRNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred HHHHHHHhhccCccceEEEEechhhCCCCCCc---cCEEEee--ehhhcCCCHHHHHHHHHHhhcC
Confidence 9999999998766 599999999999999888 9999984 3333344556788999888763
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.61 E-value=9.5e-15 Score=122.89 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=78.1
Q ss_pred CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccccCCCcccEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.+.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.|+.|++.++. +++++.+|........ + ||+|+
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~-~---fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF-R---FNAVL 303 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC-C---EEEEE
Confidence 3469999999999999999976 456999999999999999999988763 5788999987643222 3 99999
Q ss_pred EcCCCCCCCCC---CCHHHHHHHHhhcC--CcEEEEec
Q 027945 123 MNPPFGTRKKG---VDMDFLSMALKVAS--QAVYSLHK 155 (216)
Q Consensus 123 ~npp~~~~~~~---~~~~~l~~~~~~~~--~~~~~~~~ 155 (216)
+||||+..... ....+++.+.+.++ |.++++.+
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99999875321 12345566665543 45555543
No 35
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.58 E-value=9.6e-14 Score=111.32 Aligned_cols=94 Identities=28% Similarity=0.354 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~ 109 (216)
....++..+...+. ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+++.++. +++++++|+.+..
T Consensus 72 ~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 150 (251)
T TIGR03534 72 DTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL 150 (251)
T ss_pred ChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC
Confidence 33444444444322 34568999999999999999975 455999999999999999999998887 5999999997743
Q ss_pred ccccCCCcccEEEEcCCCCCC
Q 027945 110 WRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 110 ~~~~~~~~fD~v~~npp~~~~ 130 (216)
. ... ||+|++||||...
T Consensus 151 ~-~~~---fD~Vi~npPy~~~ 167 (251)
T TIGR03534 151 P-GGK---FDLIVSNPPYIPE 167 (251)
T ss_pred c-CCc---eeEEEECCCCCch
Confidence 2 224 9999999999865
No 36
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.57 E-value=2.1e-14 Score=109.60 Aligned_cols=95 Identities=39% Similarity=0.552 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CC--------eEEEEeCCHHHHHHHHHHHHhcCC--
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--AD--------QVIAIDIDSDSLELASENAADLEL-- 96 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~--------~v~~~D~~~~~~~~a~~~~~~~~~-- 96 (216)
.+.++..|+.... ..++.++||+.||+|.+.++.+..+ .. +++|.|+++.+++.|+.|++..+.
T Consensus 13 ~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 13 RPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp -HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 3556666665443 3477899999999999999988653 32 288999999999999999999887
Q ss_pred CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
.+.+.+.|+.+++..... +|.|++||||+..
T Consensus 89 ~i~~~~~D~~~l~~~~~~---~d~IvtnPPyG~r 119 (179)
T PF01170_consen 89 YIDFIQWDARELPLPDGS---VDAIVTNPPYGRR 119 (179)
T ss_dssp GEEEEE--GGGGGGTTSB---SCEEEEE--STTS
T ss_pred ceEEEecchhhcccccCC---CCEEEECcchhhh
Confidence 589999999998854435 9999999999987
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.57 E-value=2e-14 Score=113.97 Aligned_cols=136 Identities=19% Similarity=0.248 Sum_probs=72.9
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCC
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDID 80 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~ 80 (216)
++++...++++.+.++--...-.+.....|...++... ...++.+|||+|||||.++..++++ + ..+|+++|++
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s 81 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDIS 81 (233)
T ss_dssp -------------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCC
Confidence 44555565555544433323323333344544444332 3457789999999999999999975 3 4699999999
Q ss_pred HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+.|++.|++++...+. +++++++|+.++++.+++ ||+|++---++ .-......++++.+.++
T Consensus 82 ~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s---fD~v~~~fglr--n~~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 82 PGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS---FDAVTCSFGLR--NFPDRERALREMYRVLK 144 (233)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT----EEEEEEES-GG--G-SSHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc---eeEEEHHhhHH--hhCCHHHHHHHHHHHcC
Confidence 9999999999988766 899999999999988767 99999844433 22345678888888876
No 38
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=1.1e-13 Score=114.83 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=107.6
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHh-hcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAEN-SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~-~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~ 81 (216)
+++++..+..+.+|+++.....++.+..++.+.+....+. .+...++++|||+|||+|..+..++..+...|+|+|+++
T Consensus 76 ~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~ 155 (322)
T PRK15068 76 RKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ 155 (322)
T ss_pred HHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 5688999999999999999998988888877777655543 444577899999999999999999988877899999999
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 82 DSLELASENAADL--ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 82 ~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++..++...+.. ..++.++.+|+.+.+. ... ||+|++.-..++.. .....++++.+.++
T Consensus 156 ~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~---FD~V~s~~vl~H~~--dp~~~L~~l~~~Lk 217 (322)
T PRK15068 156 LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA---FDTVFSMGVLYHRR--SPLDHLKQLKDQLV 217 (322)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC---cCEEEECChhhccC--CHHHHHHHHHHhcC
Confidence 9887665443332 2268999999988776 335 99999976665542 33456677766654
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.56 E-value=5.9e-14 Score=117.19 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=78.9
Q ss_pred CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
...+|||+|||+|.++..+++.. ..+|+++|+++.+++.++.|++.++...+++.+|+.... . ++||+|++|||
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~--~---~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI--K---GRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc--C---CCccEEEECCC
Confidence 34589999999999999999764 458999999999999999999999887788888886532 2 23999999999
Q ss_pred CCCCCCC---CCHHHHHHHHhhcC--CcEEEEecC
Q 027945 127 FGTRKKG---VDMDFLSMALKVAS--QAVYSLHKT 156 (216)
Q Consensus 127 ~~~~~~~---~~~~~l~~~~~~~~--~~~~~~~~~ 156 (216)
||..... ....+++.+.+.++ |.++++.+.
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 9864222 22456666666554 355555543
No 40
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.55 E-value=2.2e-13 Score=115.71 Aligned_cols=85 Identities=27% Similarity=0.358 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVV 122 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~ 122 (216)
.++++|||+|||+|.+++.++..++.+|+++|+|+.+++.|++|++.|++ +++++++|+.++..... ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 36789999999999999988876777999999999999999999999986 58999999988754321 123599999
Q ss_pred EcCCCCCCC
Q 027945 123 MNPPFGTRK 131 (216)
Q Consensus 123 ~npp~~~~~ 131 (216)
+||||....
T Consensus 299 lDPP~f~~~ 307 (396)
T PRK15128 299 MDPPKFVEN 307 (396)
T ss_pred ECCCCCCCC
Confidence 999997654
No 41
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=2e-13 Score=111.09 Aligned_cols=95 Identities=25% Similarity=0.288 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEccccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLE 109 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~ 109 (216)
....++..+.......++.+|||+|||+|.+++.++... ..+++++|+++.+++.|+.|+... ..++.++++|+.+..
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL 171 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC
Confidence 334444444433334466799999999999999999763 569999999999999999999822 227899999986643
Q ss_pred ccccCCCcccEEEEcCCCCCC
Q 027945 110 WRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 110 ~~~~~~~~fD~v~~npp~~~~ 130 (216)
. . ++||+|++||||...
T Consensus 172 ~-~---~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 172 P-G---GRFDLIVSNPPYIPE 188 (275)
T ss_pred C-C---CceeEEEECCCcCCc
Confidence 3 2 249999999999765
No 42
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.54 E-value=6.3e-14 Score=98.60 Aligned_cols=74 Identities=34% Similarity=0.516 Sum_probs=61.5
Q ss_pred CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc-ccccccccCCCcccEEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~-~~~~~~~~~~~~fD~v~~ 123 (216)
|+.+|||+|||+|.+++.+++ .+..+|+++|+|+.+++.|++++...+. +++++++|+ ....... . ||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~---~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLE-P---FDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSS-C---EEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCC-C---CCEEEE
Confidence 467999999999999999998 3566999999999999999999955544 899999999 2222222 3 999999
Q ss_pred cC
Q 027945 124 NP 125 (216)
Q Consensus 124 np 125 (216)
+.
T Consensus 77 ~~ 78 (112)
T PF12847_consen 77 SG 78 (112)
T ss_dssp CS
T ss_pred CC
Confidence 87
No 43
>PHA03411 putative methyltransferase; Provisional
Probab=99.54 E-value=5.5e-14 Score=112.53 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=75.2
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFV 101 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (216)
.++|.||..++..++. ......+|||+|||+|.+++.++.+ +..+|+++|+++.+++.++.+.. +++++
T Consensus 45 ~G~FfTP~~i~~~f~~------~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v 114 (279)
T PHA03411 45 SGAFFTPEGLAWDFTI------DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWI 114 (279)
T ss_pred ceeEcCCHHHHHHHHh------ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEE
Confidence 4789999998765431 1123468999999999999988865 34699999999999999998753 57899
Q ss_pred EcccccccccccCCCcccEEEEcCCCCCC
Q 027945 102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
++|+.++.... . ||+|++||||+..
T Consensus 115 ~~D~~e~~~~~-k---FDlIIsNPPF~~l 139 (279)
T PHA03411 115 TSDVFEFESNE-K---FDVVISNPPFGKI 139 (279)
T ss_pred ECchhhhcccC-C---CcEEEEcCCcccc
Confidence 99998875432 4 9999999999886
No 44
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-13 Score=111.10 Aligned_cols=126 Identities=25% Similarity=0.300 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC--eEEEEc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~ 103 (216)
|-|+.+-...+....+.. ...++++|||+|||||.+++.+++.|+.+|+|+|+||.+++.|++|++.|++. +.....
T Consensus 141 FGTG~HpTT~lcL~~Le~-~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 141 FGTGTHPTTSLCLEALEK-LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred cCCCCChhHHHHHHHHHH-hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 557777666666666665 34588999999999999999999999999999999999999999999999874 333333
Q ss_pred ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHH
Q 027945 104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREH 161 (216)
Q Consensus 104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (216)
+..+.+.. ++||+|++|--- .-......++.+..++..+++...-..++
T Consensus 220 ~~~~~~~~----~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 220 LLLEVPEN----GPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred cchhhccc----CcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 33333222 249999998531 11223444555555444444444333333
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1.4e-13 Score=106.57 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++.+|||+|||+|..++.+++++. +|+++|+++.+++.++.++..+++++++..+|+....... . ||+|+++.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~I~~~~~ 103 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE-D---YDFIFSTVV 103 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC-C---CCEEEEecc
Confidence 3567999999999999999998775 9999999999999999998887777778888876544332 4 999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
|+..........++.+.+.++
T Consensus 104 ~~~~~~~~~~~~l~~~~~~Lk 124 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTR 124 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhC
Confidence 887654444566776666654
No 46
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.53 E-value=8.8e-14 Score=105.32 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=70.0
Q ss_pred hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945 42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
..+...++.++||+|||+|.++..+++++ .+|+++|+|+.+++.+++++... .+++++++|+.++...... ||.|
T Consensus 7 ~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~~~~---~d~v 81 (169)
T smart00650 7 RAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLPKLQ---PYKV 81 (169)
T ss_pred HhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCccccC---CCEE
Confidence 33344567799999999999999999874 59999999999999999998642 2789999999988765434 9999
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++||||+..
T Consensus 82 i~n~Py~~~ 90 (169)
T smart00650 82 VGNLPYNIS 90 (169)
T ss_pred EECCCcccH
Confidence 999999853
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=2.1e-13 Score=101.40 Aligned_cols=96 Identities=28% Similarity=0.456 Sum_probs=76.6
Q ss_pred CCCEEEEecCCcchHHHHHH-Hc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945 48 SNKVVADFGCGCGTLGAAAT-LL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~-~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
++.+|||+|||+|.++..++ +. +..+++|+|+++.+++.|+.+++..+. +++++++|+.++.... . ++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~-~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQEL-E-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCS-S-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccccc-C-CCeeEEEEc
Confidence 56799999999999999999 43 356999999999999999999998888 7999999999954211 0 249999999
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcC
Q 027945 125 PPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+++++. ......++.+.+.+.
T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk 101 (152)
T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLK 101 (152)
T ss_dssp STGGGT--SHHHHHHHHHHHHEE
T ss_pred Cchhhc--cCHHHHHHHHHHHcC
Confidence 998655 223456777777765
No 48
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.53 E-value=3.2e-13 Score=122.66 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEEc
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
++++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|+.|++.|+. +++++++|+.++.... ..+||+|++|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~--~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA--REQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc--CCCcCEEEEC
Confidence 5789999999999999999998777899999999999999999999987 5899999998765322 1249999999
Q ss_pred CCCCCCCCC---------CCHHHHHHHHhhcC--CcEEEEecCcc
Q 027945 125 PPFGTRKKG---------VDMDFLSMALKVAS--QAVYSLHKTST 158 (216)
Q Consensus 125 pp~~~~~~~---------~~~~~l~~~~~~~~--~~~~~~~~~~~ 158 (216)
|||...... .+...+..+.+... +.+++++....
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999765332 12344555555543 35555555443
No 49
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.53 E-value=4.9e-13 Score=99.51 Aligned_cols=116 Identities=33% Similarity=0.412 Sum_probs=77.8
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
.+|+|++||.|..++.+|+. ..+|+++|+|+..++.|+.|++..|+ +++++++|+.+..........+|+|+++||+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 37999999999999999996 45999999999999999999999998 7999999999976554211127999999999
Q ss_pred CCCC----------CCC----CHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 128 GTRK----------KGV----DMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 128 ~~~~----------~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
+.+. ... ....++.+.+..+..++.+-.......+.+..
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT-
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHh
Confidence 8651 111 12455555666666666666666677776654
No 50
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.53 E-value=9.3e-13 Score=98.04 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=119.6
Q ss_pred HHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcC---CCCCC-EEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHH
Q 027945 9 VLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVSNK-VVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDS 83 (216)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~---~~~~~-~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~ 83 (216)
+-.++.-|+.+...-+-|+. .....+++.++..... ..+.. +|||+|||.|.+...+++.+ ..+.+|+|.++.+
T Consensus 25 Y~~El~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~A 103 (227)
T KOG1271|consen 25 YELELTNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKA 103 (227)
T ss_pred HHHHHhhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHH
Confidence 34455666655555555655 3455556666554422 23333 99999999999999999877 4469999999999
Q ss_pred HHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCC---------CCCCCCHHHHHHHHhhcCCcEEE
Q 027945 84 LELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT---------RKKGVDMDFLSMALKVASQAVYS 152 (216)
Q Consensus 84 ~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~---------~~~~~~~~~l~~~~~~~~~~~~~ 152 (216)
++.|+..+++.+. .+++.+.|+....+..+ +||+|+--..|.. .+...+...++.+++..+-.+..
T Consensus 104 V~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~---qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 104 VELAQNIAERDGFSNEIRFQQLDITDPDFLSG---QFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred HHHHHHHHHhcCCCcceeEEEeeccCCccccc---ceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 9999999999988 39999999988543332 2666553222222 12245667777777744444555
Q ss_pred EecCccHHHHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEE
Q 027945 153 LHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWR 205 (216)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (216)
+|| .+.+.+.+.+.. .+.+...+. +.| .|.|..+....+....|+
T Consensus 181 SCN-~T~dELv~~f~~----~~f~~~~tv--p~p-tF~FgG~~G~tvt~vaF~ 225 (227)
T KOG1271|consen 181 SCN-FTKDELVEEFEN----FNFEYLSTV--PTP-TFMFGGSVGSTVTSVAFL 225 (227)
T ss_pred ecC-ccHHHHHHHHhc----CCeEEEEee--ccc-eEEeccccccEEEEEEEe
Confidence 666 455556555522 223333322 333 789988888777766664
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=2.4e-13 Score=105.44 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=78.4
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
.++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.++.++...++ ++++..+|+.+..... . ||+|+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~I~~~~ 103 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG-E---YDFILSTV 103 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC-C---cCEEEEec
Confidence 4567999999999999999999765 999999999999999999988777 5889999988765432 4 99999998
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++.........+++++.+.++
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk 125 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCTK 125 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHcC
Confidence 8776544445566777776665
No 52
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=1.3e-13 Score=112.42 Aligned_cols=95 Identities=36% Similarity=0.432 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~ 105 (216)
|-|+.+-...+....+..+ ..++++|||+|||||.+++..++.|+.+|+++|+||.+++.|++|+..|++...+.....
T Consensus 140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 7788888888888888774 456789999999999999999999998999999999999999999999998333333222
Q ss_pred ccccccccCCCcccEEEEcCC
Q 027945 106 RNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 106 ~~~~~~~~~~~~fD~v~~npp 126 (216)
.+... ++||+|++|--
T Consensus 219 ~~~~~-----~~~dlvvANI~ 234 (295)
T PF06325_consen 219 EDLVE-----GKFDLVVANIL 234 (295)
T ss_dssp SCTCC-----S-EEEEEEES-
T ss_pred ccccc-----ccCCEEEECCC
Confidence 22222 34999999865
No 53
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.50 E-value=9.1e-14 Score=113.91 Aligned_cols=118 Identities=31% Similarity=0.392 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc-cccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRN 107 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~ 107 (216)
+.++-.|.+.. ...+|..+||+.||||.+.+++...|. +++|+|++..|++-|+.|++..++ ...+... |+..
T Consensus 183 P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44444444433 345888999999999999999999887 999999999999999999999987 5555555 9999
Q ss_pred ccccccCCCcccEEEEcCCCCCCCC--C-----CCHHHHHHHHhhcCCcEEEEec
Q 027945 108 LEWRVCSVGHVDTVVMNPPFGTRKK--G-----VDMDFLSMALKVASQAVYSLHK 155 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~~~~~~--~-----~~~~~l~~~~~~~~~~~~~~~~ 155 (216)
.++...+ +|.|++||||+...+ . .+..+++.+.+.+++..+++..
T Consensus 258 lpl~~~~---vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 258 LPLRDNS---VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCCCc---cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 8877655 999999999988732 2 2345566666666544443333
No 54
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.49 E-value=7.2e-13 Score=105.14 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=79.1
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.++.++...+. +++++++|+.+.+....+ ||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS---FDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC---ccEE
Confidence 4456789999999999999999875 3 45999999999999999999887766 789999999887654434 9999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+++.+++.. ......++++.+.++
T Consensus 119 ~~~~~l~~~--~~~~~~l~~~~~~Lk 142 (231)
T TIGR02752 119 TIGFGLRNV--PDYMQVLREMYRVVK 142 (231)
T ss_pred EEecccccC--CCHHHHHHHHHHHcC
Confidence 998777654 234567788777765
No 55
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.49 E-value=1.1e-12 Score=110.34 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=92.1
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCC-cccEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVG-HVDTVV 122 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~-~fD~v~ 122 (216)
..|++|||++|-||.+++.++..|+.+|++||+|..+++.|++|++.||+ +..++++|++++.......+ +||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 35899999999999999999998888999999999999999999999998 57999999999876653333 799999
Q ss_pred EcCCCCCCCCCCC-------HHHHHHHHhhcC-C-cEE-EEecCc-cHHHHHHHHhhhc
Q 027945 123 MNPPFGTRKKGVD-------MDFLSMALKVAS-Q-AVY-SLHKTS-TREHVKKAALRDF 170 (216)
Q Consensus 123 ~npp~~~~~~~~~-------~~~l~~~~~~~~-~-~~~-~~~~~~-~~~~~~~~~~~~l 170 (216)
+|||-....+... ...+..+++.+. + .++ .+|... ..+.+.+.+.+..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~ 354 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAA 354 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHH
Confidence 9999877644433 344455555554 2 333 333333 2444444443333
No 56
>PRK14968 putative methyltransferase; Provisional
Probab=99.49 E-value=2.6e-12 Score=98.48 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---eEEEEcccccccccccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++.++||+|||+|.++..++..+ .+++++|+++.+++.+++++..++.+ +.++++|+.+..... . ||+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGD-K---FDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccccc-C---ceEEEE
Confidence 467799999999999999999875 59999999999999999999888773 889999987744332 4 999999
Q ss_pred cCCCCCC
Q 027945 124 NPPFGTR 130 (216)
Q Consensus 124 npp~~~~ 130 (216)
||||...
T Consensus 97 n~p~~~~ 103 (188)
T PRK14968 97 NPPYLPT 103 (188)
T ss_pred CCCcCCC
Confidence 9999763
No 57
>PLN02672 methionine S-methyltransferase
Probab=99.49 E-value=3e-13 Score=125.77 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHHhhcCC--CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--------
Q 027945 28 TGPHIASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-------- 96 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~--~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-------- 96 (216)
.|...+..++.. +...+. .++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.|+.
T Consensus 97 IPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 97 IPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred cCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 455566666555 332221 13568999999999999999975 446999999999999999999988631
Q ss_pred ---------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC--CCHHHHHHH----Hh-hcC-CcEEEEe-cCcc
Q 027945 97 ---------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG--VDMDFLSMA----LK-VAS-QAVYSLH-KTST 158 (216)
Q Consensus 97 ---------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~----~~-~~~-~~~~~~~-~~~~ 158 (216)
+++++++|+.+..... .++||+||+||||...... ......+.. +- ..+ -.++... ...+
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 5899999998765321 1249999999999876321 111111100 00 000 0111100 1222
Q ss_pred ---HHHHHHHHhhhcCCccceEEEEEeecCCcccc--ccceeeeeEEEEEEEEEe
Q 027945 159 ---REHVKKAALRDFNASSAEVLCELRYDVPQLYK--FHKKKEVDIAVDLWRFVP 208 (216)
Q Consensus 159 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 208 (216)
-..+...+.+.|+ ++|.++.|+++...+.+. +... .+...+.+|+.+.
T Consensus 254 L~~yr~i~~~a~~~L~-pgG~l~lEiG~~q~~~v~~~l~~~-~gf~~~~~~~~~~ 306 (1082)
T PLN02672 254 LGLIARAVEEGISVIK-PMGIMIFNMGGRPGQAVCERLFER-RGFRITKLWQTKI 306 (1082)
T ss_pred HHHHHHHHHHHHHhcc-CCCEEEEEECccHHHHHHHHHHHH-CCCCeeEEeeehh
Confidence 2334455557888 999999999987765543 3322 2233455676653
No 58
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.7e-13 Score=115.19 Aligned_cols=128 Identities=24% Similarity=0.374 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
|.+..+.++.+-..+.++.....++.++|++||||.+++.+++ +..+|+|+|+++++++-|+.|++.||+ +.+|+++-
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 3444445555555555665667788999999999999999999 577999999999999999999999999 89999996
Q ss_pred ccccccccc--CCCccc-EEEEcCCCCCCCCCCCHHHHHHHHhhc--CCcEEEEecCcc
Q 027945 105 IRNLEWRVC--SVGHVD-TVVMNPPFGTRKKGVDMDFLSMALKVA--SQAVYSLHKTST 158 (216)
Q Consensus 105 ~~~~~~~~~--~~~~fD-~v~~npp~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~ 158 (216)
+++...... ..++-+ +++.||| +.+.+..+++.+.+.. +..+|++|++.+
T Consensus 440 aE~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 440 AEDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hhhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 666443331 212355 8889999 8999999998877764 369999999987
No 59
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.48 E-value=2.8e-13 Score=110.07 Aligned_cols=114 Identities=22% Similarity=0.304 Sum_probs=87.2
Q ss_pred hHHHHHhccCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHH
Q 027945 5 QLESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~ 83 (216)
.+.+.+.... .++...+++ |.+++.+...++..+ ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+
T Consensus 4 ~~~~~l~~~~--~~~~k~~gq~fl~~~~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~ 76 (272)
T PRK00274 4 RTRELLERYG--HRAKKSLGQNFLIDENILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDL 76 (272)
T ss_pred hHHHHHHHcC--CCCCcccCcCcCCCHHHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHH
Confidence 3444444332 356667777 777777777666654 334678999999999999999998765 99999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 84 LELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
++.++.++.. .+++++++|+.+....... +|.|++||||+..
T Consensus 77 ~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~vv~NlPY~is 118 (272)
T PRK00274 77 APILAETFAE--DNLTIIEGDALKVDLSELQ---PLKVVANLPYNIT 118 (272)
T ss_pred HHHHHHhhcc--CceEEEEChhhcCCHHHcC---cceEEEeCCccch
Confidence 9999988743 3699999999987655412 5999999999764
No 60
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.47 E-value=4.5e-13 Score=108.10 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=81.6
Q ss_pred Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945 19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97 (216)
Q Consensus 19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 97 (216)
+..+++| |-..+.+...++..+ ...++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++... .+
T Consensus 3 ~~k~~GQnfl~d~~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~-~~ 76 (258)
T PRK14896 3 MNKKLGQHFLIDDRVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA-GN 76 (258)
T ss_pred CCCcCCccccCCHHHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC-CC
Confidence 4556666 556777777777654 33467899999999999999999874 59999999999999999887652 27
Q ss_pred eEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
++++++|+.+..... ||.|++||||+..
T Consensus 77 v~ii~~D~~~~~~~~-----~d~Vv~NlPy~i~ 104 (258)
T PRK14896 77 VEIIEGDALKVDLPE-----FNKVVSNLPYQIS 104 (258)
T ss_pred EEEEEeccccCCchh-----ceEEEEcCCcccC
Confidence 999999999876543 8999999999854
No 61
>PLN02244 tocopherol O-methyltransferase
Probab=99.47 E-value=2.2e-12 Score=108.03 Aligned_cols=111 Identities=21% Similarity=0.149 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcCC-----CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945 32 IASRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~-----~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d 104 (216)
.+..++..++..... .++.+|||+|||+|.++..+++....+|+|+|+++.+++.++.+++..+. +++++++|
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 344555555555443 56789999999999999999986445999999999999999999988776 69999999
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+.+.++.++. ||+|++.-.+++.. ....+++++.+.++
T Consensus 177 ~~~~~~~~~~---FD~V~s~~~~~h~~--d~~~~l~e~~rvLk 214 (340)
T PLN02244 177 ALNQPFEDGQ---FDLVWSMESGEHMP--DKRKFVQELARVAA 214 (340)
T ss_pred cccCCCCCCC---ccEEEECCchhccC--CHHHHHHHHHHHcC
Confidence 9988766555 99999977665542 23467777777765
No 62
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=1.9e-12 Score=104.10 Aligned_cols=114 Identities=21% Similarity=0.228 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (216)
|-.+-+...+..+...+...+|.+|||+|||-|.+++.+|+.-..+|+|+++|+...+.+++.++..|+ ++++...|.
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~ 131 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY 131 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence 345667778888888888899999999999999999999987545999999999999999999999998 699999999
Q ss_pred ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++.. . ||.|++--.|.+........+++.+.+.++
T Consensus 132 rd~~e---~---fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 132 RDFEE---P---FDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred ccccc---c---cceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 87644 3 999999999988877778888888888775
No 63
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.46 E-value=1.4e-12 Score=99.74 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
...++.++||+|||.|..++.+|+.|. .|+++|+|+.+++.++..++..+++++..+.|+.+..... . ||+|++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~-~---yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE-E---YDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT-T---EEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC-C---cCEEEEE
Confidence 345678999999999999999999888 8999999999999999999888889999999998877654 5 9999987
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcC
Q 027945 125 PPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
-.++..........++.+.....
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~ 124 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATK 124 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcC
Confidence 77777755555556666655544
No 64
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.46 E-value=2.3e-12 Score=101.65 Aligned_cols=104 Identities=25% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEE-
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFV- 101 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~- 101 (216)
.|..++++..++..+... ...++..+||+|||+|.+++.++.. +...|+++|.++.++..|.+|++.+++ .++++
T Consensus 127 RpETEE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 344455665555555432 3345668999999999999999863 667999999999999999999999987 56666
Q ss_pred ---EcccccccccccCCCcccEEEEcCCCCCCCC
Q 027945 102 ---QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK 132 (216)
Q Consensus 102 ---~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~ 132 (216)
..|+..... . ..++.|++++||||...++
T Consensus 206 ~~me~d~~~~~~-l-~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 206 NIMESDASDEHP-L-LEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred cccccccccccc-c-ccCceeEEecCCCcccccc
Confidence 444444322 1 3356999999999987643
No 65
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.46 E-value=6e-13 Score=108.92 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=84.0
Q ss_pred CCCccccccCC-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945 17 SNPKVELEQYP-TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE 95 (216)
Q Consensus 17 ~~~~~~~~~~~-t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (216)
.++..+.+|.+ +.+.+...++..+ ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+
T Consensus 8 ~~~kk~~GQnFL~d~~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 8 MVFNKKFGQHILKNPLVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred cCcCCCCCccccCCHHHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence 35666777744 5666776666554 33477899999999999999999865 489999999999999999988765
Q ss_pred C--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 96 L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 96 ~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
. +++++++|+.+.... . ||.|++|+||+..
T Consensus 83 ~~~~v~ii~~Dal~~~~~--~---~d~VvaNlPY~Is 114 (294)
T PTZ00338 83 LASKLEVIEGDALKTEFP--Y---FDVCVANVPYQIS 114 (294)
T ss_pred CCCcEEEEECCHhhhccc--c---cCEEEecCCcccC
Confidence 3 799999999886544 3 9999999999866
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=9.8e-13 Score=102.46 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=77.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+.+.. ++++.++|+.+ +..+++ ||+|+++-
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~~s---fD~V~~~~ 113 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKDNF---FDLVLTKG 113 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCCCC---EEEEEECC
Confidence 35678999999999999999875 45699999999999999998753 46788899887 444434 99999999
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCcEEE
Q 027945 126 PFGTRKKGVDMDFLSMALKVASQAVYS 152 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (216)
.+++.........++++.+..++.+++
T Consensus 114 vL~hl~p~~~~~~l~el~r~~~~~v~i 140 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCSNRYILI 140 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhcCcEEEE
Confidence 887765445567888888887654443
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=1.7e-11 Score=94.33 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
..++.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|++.++. +++++.+|+... ... . ||+|++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-~~~-~---~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-LPG-K---ADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-cCc-C---CCEEEE
Confidence 3467899999999999999999763 46999999999999999999988876 689999987532 222 3 999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+.... .....++.+.+.+.
T Consensus 104 ~~~~~-----~~~~~l~~~~~~Lk 122 (187)
T PRK08287 104 GGSGG-----NLTAIIDWSLAHLH 122 (187)
T ss_pred CCCcc-----CHHHHHHHHHHhcC
Confidence 75422 22345666666654
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.44 E-value=4.7e-12 Score=103.74 Aligned_cols=111 Identities=28% Similarity=0.374 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~ 103 (216)
|.|+.+-...+....+..+ ..++.+|||+|||+|.+++.+++.|..+|+++|+|+.+++.|+.|+..+++ .+.+..+
T Consensus 138 FgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred ccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence 5566565666655555442 346789999999999999999988877999999999999999999999887 4566666
Q ss_pred ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+..... . ++||+|++|.... .....+.++.+..+
T Consensus 217 ~~~~~~--~---~~fDlVvan~~~~-----~l~~ll~~~~~~Lk 250 (288)
T TIGR00406 217 YLEQPI--E---GKADVIVANILAE-----VIKELYPQFSRLVK 250 (288)
T ss_pred cccccc--C---CCceEEEEecCHH-----HHHHHHHHHHHHcC
Confidence 633222 2 2499999987522 12345555555554
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=4.1e-13 Score=92.95 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=72.4
Q ss_pred EEEecCCcchHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE-cCC
Q 027945 52 VADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM-NPP 126 (216)
Q Consensus 52 vLD~g~G~G~~~~~l~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~-npp 126 (216)
|||+|||+|..+..+++.. ..+++++|+|+.+++.++++....+.+++++++|+.+++...+. ||+|++ ..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~---~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGK---FDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSS---EEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCC---eeEEEEcCCc
Confidence 7999999999999999752 26999999999999999999988777899999999997765545 999999 555
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+++..+.....+++++.+.++
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLR 98 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEE
T ss_pred cCCCCHHHHHHHHHHHHHHhC
Confidence 666655555666666665543
No 70
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.43 E-value=1.7e-13 Score=111.07 Aligned_cols=139 Identities=24% Similarity=0.275 Sum_probs=86.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
..+++|||++|=||.+++.++..|+.+|+++|.|..+++.+++|++.|++ +++++.+|++++.......++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 36789999999999999999988888999999999999999999999987 689999999986643223346999999
Q ss_pred cCCCCCCCCCC----CHHHHHHHHhhcC--CcEE-EEecCc-cHHHHHHHHhhhcCCccceEEEEEeecCCccc
Q 027945 124 NPPFGTRKKGV----DMDFLSMALKVAS--QAVY-SLHKTS-TREHVKKAALRDFNASSAEVLCELRYDVPQLY 189 (216)
Q Consensus 124 npp~~~~~~~~----~~~~l~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 189 (216)
|||-....... +...+..+.+... +.++ .+|.+. +.+.+.+.+.+. . ...+++ ..+..|+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~-a-~~~~~~--~~~~~p~df 271 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA-A-REVEFI--ERLGQPPDF 271 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH-H-HHCEEE--EEEE-----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh-C-ccceEe--eeecccccc
Confidence 99976553322 2344556666554 3333 334333 245555555222 2 344444 334445544
No 71
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.43 E-value=9e-12 Score=102.83 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------CCCeEEEEcc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCD 104 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~d 104 (216)
.....++..+... ...++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.++.+++.. ..++++..+|
T Consensus 128 ~~v~~~l~~l~~~-~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAED-GSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhc-CCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 3444455444321 134578999999999999999998765 9999999999999999998764 1257888888
Q ss_pred cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
+.+. .+. ||+|++.-.+++.........++.+.+..++.+++.+.+.+
T Consensus 206 l~~l---~~~---fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~ 253 (315)
T PLN02585 206 LESL---SGK---YDTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKT 253 (315)
T ss_pred hhhc---CCC---cCEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcc
Confidence 7543 224 99999876655443333334556666656678888887765
No 72
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=2.1e-12 Score=105.83 Aligned_cols=95 Identities=23% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
++.+|||+|||+|..++.+++.|. +|+|+|+|+.+++.++.+++.+++++++...|+...... .. ||+|++...+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~-~~---fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ-EE---YDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc-CC---ccEEEEcchh
Confidence 456999999999999999998775 999999999999999999998888888888898765442 24 9999999888
Q ss_pred CCCCCCCCHHHHHHHHhhcC
Q 027945 128 GTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~ 147 (216)
+.........+++++.+..+
T Consensus 195 ~~l~~~~~~~~l~~~~~~Lk 214 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTN 214 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcC
Confidence 76644444566777666654
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.42 E-value=5.9e-12 Score=98.97 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=69.7
Q ss_pred HHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCC
Q 027945 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSV 115 (216)
Q Consensus 39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 115 (216)
.+...+...++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|+++++.++. +++++++|+.+.......
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~- 146 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP- 146 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC-
Confidence 33333345678899999999999999999763 24699999999999999999999887 799999999875443334
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
||+|+++++.
T Consensus 147 --fD~Ii~~~~~ 156 (215)
T TIGR00080 147 --YDRIYVTAAG 156 (215)
T ss_pred --CCEEEEcCCc
Confidence 9999998763
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.42 E-value=5.1e-12 Score=101.87 Aligned_cols=125 Identities=21% Similarity=0.138 Sum_probs=97.6
Q ss_pred hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhh-cCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~-~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~ 81 (216)
+++|++.+.++.+|+++........+..++.+..-+..+.. +.+..+++|||+|||+|..+..++.+|+..|+|+|.++
T Consensus 69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 67899999999999999999988888888888777776654 45789999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCC
Q 027945 82 DSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK 131 (216)
Q Consensus 82 ~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~ 131 (216)
..+-+.+...+..|. .+......+++++. .+. ||+|+|=..+++.+
T Consensus 149 lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~---FDtVF~MGVLYHrr 196 (315)
T PF08003_consen 149 LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA---FDTVFSMGVLYHRR 196 (315)
T ss_pred HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC---cCEEEEeeehhccC
Confidence 877665544444443 23333356666655 335 99999866666653
No 75
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.42 E-value=1.4e-12 Score=107.55 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEE-cccccccccc-cCCCcccEE
Q 027945 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ-CDIRNLEWRV-CSVGHVDTV 121 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~-~d~~~~~~~~-~~~~~fD~v 121 (216)
.+.++||||||+|.+...++. ....+++|+|+|+.+++.|+.|++.| ++ ++++++ .|........ ...++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999988777664 34569999999999999999999999 67 577754 3333322111 112359999
Q ss_pred EEcCCCCCCCC
Q 027945 122 VMNPPFGTRKK 132 (216)
Q Consensus 122 ~~npp~~~~~~ 132 (216)
+|||||+....
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99999998743
No 76
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=1.6e-12 Score=104.83 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 108 (216)
..........++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+.+ +++++++|+.++
T Consensus 11 ~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~ 84 (255)
T PRK14103 11 ADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW 84 (255)
T ss_pred HhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC
Confidence 3444444555555555567789999999999999999976 345999999999999999764 478899999876
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.. ... ||+|+++..+++.. .....++++.+.++
T Consensus 85 ~~-~~~---fD~v~~~~~l~~~~--d~~~~l~~~~~~Lk 117 (255)
T PRK14103 85 KP-KPD---TDVVVSNAALQWVP--EHADLLVRWVDELA 117 (255)
T ss_pred CC-CCC---ceEEEEehhhhhCC--CHHHHHHHHHHhCC
Confidence 43 224 99999999998763 23566777777665
No 77
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=5.2e-12 Score=98.34 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=74.4
Q ss_pred CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc-ccccccccCCCcccEEEEc
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~-~~~~~~~~~~~~fD~v~~n 124 (216)
++.+|||+|||+|..+..+++. +..+++++|+++.+++.|+.+++.++. +++++++|+ ..+.... ..+.||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~-~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF-PDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-CccccceEEEE
Confidence 5679999999999999999875 445899999999999999999988876 799999999 5444111 12239999997
Q ss_pred CCCCCC------CCCCCHHHHHHHHhhcC
Q 027945 125 PPFGTR------KKGVDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~------~~~~~~~~l~~~~~~~~ 147 (216)
.|.... .......+++++.+.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk 147 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLK 147 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcC
Confidence 553221 11124567888877765
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=5.8e-12 Score=99.23 Aligned_cols=107 Identities=23% Similarity=0.264 Sum_probs=82.3
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...+. ++++.++|+...+ .+ ||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~---fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE---FDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC---cCEEEE
Confidence 34678999999999999999998655 999999999999999999987765 6899999998765 24 999997
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR 159 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 159 (216)
.-.+.+.........++++.+..++.+++.+.+.+.
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~ 161 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTA 161 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch
Confidence 544433322233456677776666677777776653
No 79
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=4.2e-12 Score=101.84 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=78.3
Q ss_pred CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+.++..++. +++++++|+.+.+.. . +|+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~---~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--N---ASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--C---CCEE
Confidence 46679999999999999888862 456999999999999999999987765 689999999887654 3 9999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+++..++..........++++.+.++
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lk 155 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLN 155 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcC
Confidence 99988877654444567777777765
No 80
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.41 E-value=3.6e-12 Score=105.95 Aligned_cols=94 Identities=32% Similarity=0.461 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC-------------------------------------
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD------------------------------------- 72 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~------------------------------------- 72 (216)
+.+++.|+... ...++..++|+-||+|.+.++.|..+..
T Consensus 177 etLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 177 ETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred HHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 44555555443 3346679999999999999999976521
Q ss_pred ---eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 73 ---QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 73 ---~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
.++|+|+|+.+++.|+.|++..|+ .++|.++|+..+...... +|+||+||||+..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~---~gvvI~NPPYGeR 312 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEE---YGVVISNPPYGER 312 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCc---CCEEEeCCCcchh
Confidence 377999999999999999999999 599999999987766334 9999999999987
No 81
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.41 E-value=2.7e-12 Score=103.14 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (216)
.++..+...++..+...+..+|||+|||+|.++..+++.+ .+|+++|+++.+++.++.+.. ...++++|+...+.
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~ 99 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcC
Confidence 3455555555555444456799999999999999998865 499999999999999988753 24678999988766
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 111 ~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+.+ ||+|+++.+++... .....+.++.+.++
T Consensus 100 ~~~~---fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk 131 (251)
T PRK10258 100 ATAT---FDLAWSNLAVQWCG--NLSTALRELYRVVR 131 (251)
T ss_pred CCCc---EEEEEECchhhhcC--CHHHHHHHHHHHcC
Confidence 5545 99999998887542 34467777777765
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.40 E-value=2.9e-11 Score=91.09 Aligned_cols=126 Identities=24% Similarity=0.258 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~ 105 (216)
|-+++....|.. +.+.++.+++|+|||||.++++++.. +..+|+++|-++++++..++|++..|. +++++.+|+
T Consensus 18 TK~EIRal~ls~----L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A 93 (187)
T COG2242 18 TKEEIRALTLSK----LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA 93 (187)
T ss_pred cHHHHHHHHHHh----hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence 445555544443 35678899999999999999999954 467999999999999999999999998 899999999
Q ss_pred ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
-+....... ||.||..-. ......++.+...+++..-++.+.-+.+-.....
T Consensus 94 p~~L~~~~~---~daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~ 145 (187)
T COG2242 94 PEALPDLPS---PDAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLETLAKAL 145 (187)
T ss_pred hHhhcCCCC---CCEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence 987765434 999998643 3444566666665554334444444444333333
No 83
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.40 E-value=1.6e-12 Score=101.26 Aligned_cols=105 Identities=24% Similarity=0.334 Sum_probs=82.3
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++.+|||+|||-|.++..+|+.|. .|+|+|+++.+++.|+..+..+++++++.+..++++....++ ||+|+|.=.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~---FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQ---FDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCC---ccEEEEhhH
Confidence 5889999999999999999999885 999999999999999999999998888999999887665434 999999666
Q ss_pred CCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945 127 FGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS 157 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ 157 (216)
..+... ...+++.+.+..+ +.++++.-..
T Consensus 134 lEHv~d--p~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 134 LEHVPD--PESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HHccCC--HHHHHHHHHHHcCCCcEEEEecccc
Confidence 655422 2235666655544 3555554433
No 84
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.40 E-value=4.4e-12 Score=104.98 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+.+..+. +++++++|+.+++...+. ||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~---FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRK---FDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCC---CCEEEEh
Confidence 4567999999999999999998665 999999999999999988766543 689999999887654434 9999987
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcC
Q 027945 125 PPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
-.+++.. ....+++++.+.++
T Consensus 206 ~vLeHv~--d~~~~L~~l~r~Lk 226 (322)
T PLN02396 206 EVIEHVA--NPAEFCKSLSALTI 226 (322)
T ss_pred hHHHhcC--CHHHHHHHHHHHcC
Confidence 6666553 23467777776654
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=1.3e-11 Score=99.15 Aligned_cols=105 Identities=31% Similarity=0.441 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC--eEEEEc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~ 103 (216)
|.|+.+-...++...+.. ...++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++|++.+++. +.+..+
T Consensus 98 fgtg~h~tt~~~l~~l~~-~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~ 176 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEK-LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176 (250)
T ss_pred cCCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence 445554444444444433 23467899999999999999988878768999999999999999999988762 333322
Q ss_pred ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
|. . ||+|++|.... .....+.++.+.++
T Consensus 177 ~~--------~---fD~Vvani~~~-----~~~~l~~~~~~~Lk 204 (250)
T PRK00517 177 DL--------K---ADVIVANILAN-----PLLELAPDLARLLK 204 (250)
T ss_pred CC--------C---cCEEEEcCcHH-----HHHHHHHHHHHhcC
Confidence 21 3 99999986421 12345566666654
No 86
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=8.8e-12 Score=100.47 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccc-cccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-RVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~~~fD~v~~ 123 (216)
.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++...+. +++++++|+.+... .... ||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~---fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP---VDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC---CCEEEe
Confidence 4567999999999999999999765 999999999999999999988776 68999999987642 2224 999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+.++++... ....++++.+.++
T Consensus 119 ~~vl~~~~~--~~~~l~~~~~~Lk 140 (255)
T PRK11036 119 HAVLEWVAD--PKSVLQTLWSVLR 140 (255)
T ss_pred hhHHHhhCC--HHHHHHHHHHHcC
Confidence 888766532 2356777777655
No 87
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.39 E-value=2.2e-12 Score=87.49 Aligned_cols=88 Identities=28% Similarity=0.357 Sum_probs=69.1
Q ss_pred EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCC
Q 027945 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK 132 (216)
Q Consensus 53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~ 132 (216)
||+|||+|..+..+++.+..+++++|+++.+++.++++.... ++.+.++|+.++++.+.+ ||+|+++-.+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~s---fD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNS---FDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT----EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--CchheeehHHhCcccccc---ccccccccceeec--
Confidence 899999999999999986669999999999999999998764 356999999999887766 9999998777665
Q ss_pred CCCHHHHHHHHhhcC
Q 027945 133 GVDMDFLSMALKVAS 147 (216)
Q Consensus 133 ~~~~~~l~~~~~~~~ 147 (216)
......++++.+.++
T Consensus 74 ~~~~~~l~e~~rvLk 88 (95)
T PF08241_consen 74 EDPEAALREIYRVLK 88 (95)
T ss_dssp SHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHcC
Confidence 344455666665554
No 88
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.4e-11 Score=89.69 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.....++|+|||+|..+..+++. +.....++|+||.+.+...+.++.|+.+++.++.|+....... + .|++++|
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~-~---VDvLvfN 117 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNE-S---VDVLVFN 117 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccC-C---ccEEEEC
Confidence 34678999999999999999975 4568899999999999999999999999999999998876653 5 9999999
Q ss_pred CCCCCCC
Q 027945 125 PPFGTRK 131 (216)
Q Consensus 125 pp~~~~~ 131 (216)
|||....
T Consensus 118 PPYVpt~ 124 (209)
T KOG3191|consen 118 PPYVPTS 124 (209)
T ss_pred CCcCcCC
Confidence 9998763
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=1.8e-11 Score=94.70 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
...++||+|||+|.++..+++. +..+++|+|+++.+++.|+.++...+. +++++++|+.+++......+.+|.|++|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4468999999999999999975 456999999999999999999988877 79999999987542211112499999997
Q ss_pred CCCCCCC------CCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945 126 PFGTRKK------GVDMDFLSMALKVASQAVYSLHKTSTREHVKK 164 (216)
Q Consensus 126 p~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (216)
|-..... -....+++.+.+.+++...+.+......+...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~ 140 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED 140 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 6433211 12256777777776532223333334444433
No 90
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.38 E-value=1.5e-11 Score=97.94 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 106 (216)
...+.++..+ ...+|.+|||.|.|+|.++..+++. +.++|+..|..++.++.|++|++.+|. ++++.+.|+.
T Consensus 27 kD~~~I~~~l----~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 27 KDISYILMRL----DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHHT----T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred chHHHHHHHc----CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3444444444 4459999999999999999999975 457999999999999999999999988 6999999997
Q ss_pred cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccce
Q 027945 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAE 176 (216)
Q Consensus 107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (216)
+.-+....+..+|.|+.|.| .++..++.+.+++ .+....+++..++.+++.... ..|...++.
T Consensus 103 ~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L--~~~gG~i~~fsP~ieQv~~~~-~~L~~~gf~ 165 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLDLP----DPWEAIPHAKRAL--KKPGGRICCFSPCIEQVQKTV-EALREHGFT 165 (247)
T ss_dssp CG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE---EEEEEEEEEESSHHHHHHHH-HHHHHTTEE
T ss_pred cccccccccCcccEEEEeCC----CHHHHHHHHHHHH--hcCCceEEEECCCHHHHHHHH-HHHHHCCCe
Confidence 53332212235999999999 6666666666665 134557777778888888777 444433433
No 91
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=1e-11 Score=100.65 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 106 (216)
..-+..++..+...+...+|.+|||+|||.|.+++.++++ |+ +|+|+.+|+...+.+++.++..|+ ++++...|..
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 4467777888888877789999999999999999999987 66 999999999999999999999988 6999999998
Q ss_pred cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++.. . ||.|++--.+.+........+++.+.+.++
T Consensus 123 ~~~~---~---fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 123 DLPG---K---FDRIVSIEMFEHVGRKNYPAFFRKISRLLK 157 (273)
T ss_dssp G------S----SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred ccCC---C---CCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence 7654 4 999999777777655566678888777764
No 92
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=1.1e-11 Score=106.89 Aligned_cols=84 Identities=25% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++.|++.+|.+++++++|+.+..... ..++||.|++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~-~~~~fD~Vl~ 319 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW-DGQPFDRILL 319 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc-ccCCCCEEEE
Confidence 45678899999999999999999764 369999999999999999999999888889999998653211 1124999999
Q ss_pred cCCCCC
Q 027945 124 NPPFGT 129 (216)
Q Consensus 124 npp~~~ 129 (216)
|||+..
T Consensus 320 D~Pcs~ 325 (427)
T PRK10901 320 DAPCSA 325 (427)
T ss_pred CCCCCc
Confidence 999864
No 93
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.37 E-value=4.1e-12 Score=107.53 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=77.8
Q ss_pred CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+.+|||++||+|.+++.++.. +..+|+++|+|+.+++.++.|++.|++ ++++.++|+..+...... ||+|++|||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~---fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERK---FDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCC---CCEEEECCC
Confidence 468999999999999999864 556999999999999999999999988 578999999776542223 999999997
Q ss_pred CCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945 127 FGTRKKGVDMDFLSMALKVAS--QAVYSLH 154 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 154 (216)
+....++..++...+ +.+|+++
T Consensus 135 ------Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ------GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ------CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 445678877555543 5677663
No 94
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=1.5e-11 Score=99.35 Aligned_cols=97 Identities=20% Similarity=0.333 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHh---cCC-CeEEEEcccccccccccCCCccc
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LEL-DIDFVQCDIRNLEWRVCSVGHVD 119 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~~~fD 119 (216)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++.|++.|+++... ... +++++++|+.+++..+++ ||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s---fD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY---FD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC---Ee
Confidence 356789999999999999998875 3 35999999999999999877542 112 689999999988776656 99
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 120 TVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+|+++-.++... .....++++.+.++
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLk 173 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLK 173 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcC
Confidence 999977766552 34567888888765
No 95
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.36 E-value=4.6e-11 Score=85.20 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++.+++.++. +++++.+|+....... ..+||.|+
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~v~ 93 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LPEPDRVF 93 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cCCCCEEE
Confidence 3345679999999999999999976 446999999999999999999988776 6889999876533221 12499999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++.+.. ....+++.+.+.+.
T Consensus 94 ~~~~~~-----~~~~~l~~~~~~Lk 113 (124)
T TIGR02469 94 IGGSGG-----LLQEILEAIWRRLR 113 (124)
T ss_pred ECCcch-----hHHHHHHHHHHHcC
Confidence 865422 12345555555544
No 96
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.36 E-value=8.3e-12 Score=101.07 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++|++.++. ++++++.|+..+...... ||+|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~---fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK---FDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC---CCEE
Confidence 3457789999999999999998864 2 45899999999999999999999987 789999998765443334 9999
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++|||+...
T Consensus 145 l~D~Pcsg~ 153 (264)
T TIGR00446 145 LLDAPCSGE 153 (264)
T ss_pred EEcCCCCCC
Confidence 999998653
No 97
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=1.5e-11 Score=97.30 Aligned_cols=108 Identities=18% Similarity=0.110 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
....+...++..+.... .++.+|||+|||+|.++..+++....+|+|+|+++.|++.|+.. ...+++|+..
T Consensus 33 ~~~~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~ 103 (226)
T PRK05785 33 QDVRWRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEA 103 (226)
T ss_pred CcHHHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhh
Confidence 33455555555554321 23679999999999999999986334999999999999999864 2457899988
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCc
Q 027945 108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA 149 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~ 149 (216)
+++.+.+ ||+|++....+.. ......++++.+.+++.
T Consensus 104 lp~~d~s---fD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 104 LPFRDKS---FDVVMSSFALHAS--DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCCC---EEEEEecChhhcc--CCHHHHHHHHHHHhcCc
Confidence 8876656 9999998776543 33456788888777653
No 98
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=3.2e-11 Score=94.54 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
+.+.+...++..+ ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++.++. +++++++|
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 3345555555443 4457889999999999999998875 3 35999999999999999999998887 79999999
Q ss_pred cccccccccCCCcccEEEEcCC
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp 126 (216)
.......... ||+|+++-.
T Consensus 136 ~~~~~~~~~~---fD~I~~~~~ 154 (212)
T PRK13942 136 GTLGYEENAP---YDRIYVTAA 154 (212)
T ss_pred cccCCCcCCC---cCEEEECCC
Confidence 8875544334 999998654
No 99
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.35 E-value=7.8e-12 Score=100.67 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=84.7
Q ss_pred Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945 19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97 (216)
Q Consensus 19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 97 (216)
+...++| |.+.+.+...++..+ ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++.+... ..+
T Consensus 3 ~~k~~gq~fl~d~~i~~~i~~~~----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~ 76 (253)
T TIGR00755 3 PRKSLGQNFLIDESVIQKIVEAA----NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YER 76 (253)
T ss_pred CCCCCCCccCCCHHHHHHHHHhc----CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCc
Confidence 4556666 667777777776654 334678999999999999999998765 799999999999999988754 227
Q ss_pred eEEEEcccccccccccCCCccc---EEEEcCCCCCCCCCCCHHHHHHHH
Q 027945 98 IDFVQCDIRNLEWRVCSVGHVD---TVVMNPPFGTRKKGVDMDFLSMAL 143 (216)
Q Consensus 98 ~~~~~~d~~~~~~~~~~~~~fD---~v~~npp~~~~~~~~~~~~l~~~~ 143 (216)
++++++|+.+.+... +| +|++|+||+.. ...+.+.+
T Consensus 77 v~v~~~D~~~~~~~~-----~d~~~~vvsNlPy~i~-----~~il~~ll 115 (253)
T TIGR00755 77 LEVIEGDALKVDLPD-----FPKQLKVVSNLPYNIS-----SPLIFKLL 115 (253)
T ss_pred EEEEECchhcCChhH-----cCCcceEEEcCChhhH-----HHHHHHHh
Confidence 899999999877653 66 99999998854 34555555
No 100
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=3.2e-11 Score=94.10 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=68.0
Q ss_pred hhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCc
Q 027945 42 NSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGH 117 (216)
Q Consensus 42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~ 117 (216)
..+...++.+|||+|||+|..+..+++. + .++|+++|+++.+++.|++|++.++. +++++++|+.+.......
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~--- 142 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP--- 142 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC---
Confidence 3334457789999999999999888875 2 45999999999999999999998876 489999999875544334
Q ss_pred ccEEEEcCCCC
Q 027945 118 VDTVVMNPPFG 128 (216)
Q Consensus 118 fD~v~~npp~~ 128 (216)
||+|+++.+..
T Consensus 143 fD~Ii~~~~~~ 153 (205)
T PRK13944 143 FDAIIVTAAAS 153 (205)
T ss_pred ccEEEEccCcc
Confidence 99999987643
No 101
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=1.4e-11 Score=99.40 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=79.8
Q ss_pred HHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCc
Q 027945 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH 117 (216)
Q Consensus 39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 117 (216)
.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+.+.. +++++.+|+.++.... .
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~-~--- 93 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQ-A--- 93 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCC-C---
Confidence 3333434456789999999999999999975 45699999999999999998753 4788999987664332 4
Q ss_pred ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
||+|+++..+++.. .....++++.+.++ ++.+++
T Consensus 94 fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 94 LDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred ccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEE
Confidence 99999999988763 34567888877765 444444
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.34 E-value=1.3e-10 Score=91.14 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 107 (216)
.+.+...++. .+...++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+. +++++++|..+
T Consensus 63 ~p~~~~~l~~----~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 63 QPYMVARMTE----LLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred cHHHHHHHHH----hcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 3444444443 3344577899999999999999888764 4899999999999999999998887 69999999876
Q ss_pred ccccccCCCcccEEEEcCCC
Q 027945 108 LEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~ 127 (216)
.....+. ||+|+++.+.
T Consensus 138 ~~~~~~~---fD~I~~~~~~ 154 (212)
T PRK00312 138 GWPAYAP---FDRILVTAAA 154 (212)
T ss_pred CCCcCCC---cCEEEEccCc
Confidence 4333234 9999998764
No 103
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.34 E-value=1.4e-11 Score=99.73 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=76.6
Q ss_pred cCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 44 FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 44 ~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
+...++.+|||+|||+|..+..+++....+|+++|+++.+++.|+.+... ..++.+.++|+.+.+....+ ||+|++
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~---FD~V~s 123 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENT---FDMIYS 123 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCC---eEEEEE
Confidence 34567789999999999999988865345999999999999999998754 23689999999876655445 999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
...+.+.........++++.+.++
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLK 147 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcC
Confidence 766554432344567777777765
No 104
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.34 E-value=8.6e-12 Score=103.30 Aligned_cols=124 Identities=25% Similarity=0.365 Sum_probs=84.9
Q ss_pred CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--------CCCeEEEEeCCHHHHHHHHHH
Q 027945 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~a~~~ 90 (216)
.....++|.||..++..|...+ ...++.+|+|++||+|.+.+.+.+. ....++|+|+++.++..|+.|
T Consensus 21 ~~k~~G~~~TP~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 21 SRKKLGQFYTPREIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTTSCGGC---HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred hccccceeehHHHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 3566789999999998777776 3346678999999999998888762 456899999999999999999
Q ss_pred HHhcCC---CeEEEEcccccccccccCCCcccEEEEcCCCCCC--C-----------------CCCCHHHHHHHHhhcC
Q 027945 91 AADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR--K-----------------KGVDMDFLSMALKVAS 147 (216)
Q Consensus 91 ~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~--~-----------------~~~~~~~l~~~~~~~~ 147 (216)
+...+. ...+..+|.+...... ...+||+|++||||... . ......|+..+++.+.
T Consensus 97 l~l~~~~~~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 174 (311)
T PF02384_consen 97 LLLHGIDNSNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK 174 (311)
T ss_dssp HHHTTHHCBGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE
T ss_pred hhhhccccccccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc
Confidence 877665 3468899987655432 12349999999999865 1 0122357788887765
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.33 E-value=1e-10 Score=98.47 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=90.0
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
....+..+||+|||+|.+++.+|+. +...++|+|+++.+++.|..++..+++ ++.++++|+..+.... ..+.+|.|+
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~-~~~s~D~I~ 197 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL-PSNSVEKIF 197 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC-CCCceeEEE
Confidence 4456679999999999999999976 456999999999999999999998888 8999999997643221 223499999
Q ss_pred EcCCCCCCCCCC----CHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 123 MNPPFGTRKKGV----DMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 123 ~npp~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
++.|..+..... ...++..+.+.+.+...+.+.++..+++....
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~ 245 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSL 245 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHH
Confidence 998755442221 24678888888765555556666665655544
No 106
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.33 E-value=2e-11 Score=102.88 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred CCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945 49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
+.+|||+.||+|..++.++++ |..+|+++|+|+.+++.++.|++.|+. ++++.++|+..+.... ..+||+|+.||
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCC
Confidence 358999999999999999987 678999999999999999999999988 6899999998876542 12499999999
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS--QAVYSLH 154 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 154 (216)
|+ ....++..+++... +.+++.+
T Consensus 123 -fG-----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -FG-----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CC-----CcHHHHHHHHHhcccCCEEEEEe
Confidence 43 33578888887664 4566653
No 107
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=1e-10 Score=90.82 Aligned_cols=98 Identities=19% Similarity=0.410 Sum_probs=74.8
Q ss_pred hcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcc
Q 027945 43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHV 118 (216)
Q Consensus 43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~f 118 (216)
.+...++.+|||+|||+|.+++.+++. + ..+|+++|+++.+++.+++|++.+++ +++++.+|+.+..... .++|
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~--~~~~ 112 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI--NEKF 112 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc--CCCC
Confidence 345568889999999999999999864 3 46999999999999999999998884 7899999987754321 1249
Q ss_pred cEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 119 DTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
|+|+++.. .......++.+.+.++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~Lk 136 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIK 136 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcC
Confidence 99999653 1233456776666654
No 108
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=4e-11 Score=95.72 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++++...+. +++++++|+.+.+.. . +|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~---~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--N---ASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--C---CCEE
Confidence 36679999999999999999874 356899999999999999999887654 689999999887654 3 8999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
+++-.+++.........++++.+.++ ++.+++
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99888777644444567888887765 333333
No 109
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.32 E-value=9.2e-12 Score=110.07 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=81.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcCC---CCCCEEEEecCCcchHHHHHHHcC---------CCeEEEEeCCHHHHHHHHH
Q 027945 22 ELEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 22 ~~~~~~t~~~~~~~~l~~~~~~~~~---~~~~~vLD~g~G~G~~~~~l~~~~---------~~~v~~~D~~~~~~~~a~~ 89 (216)
+.++|.||..++..|+..+...... ....+|||+|||+|.+.+.++... ..+++|+|+++.+++.++.
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 5689999999999999887643221 144699999999999998887532 1478999999999999999
Q ss_pred HHHhcCC-CeEEEEccccccccc--ccCCCcccEEEEcCCCCCC
Q 027945 90 NAADLEL-DIDFVQCDIRNLEWR--VCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 90 ~~~~~~~-~~~~~~~d~~~~~~~--~~~~~~fD~v~~npp~~~~ 130 (216)
++...+. .+.+.+.|....... ....++||+|++||||...
T Consensus 82 ~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 82 LLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHhhcCCCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 9887653 456666665543211 1112359999999999864
No 110
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.5e-11 Score=93.45 Aligned_cols=111 Identities=26% Similarity=0.282 Sum_probs=89.4
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
...++.+|+|.|.|||+++..+++. + .++|+.+|+.++.++.|++|++..++ ++++..+|+.+..... . ||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~---vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-D---VDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-c---cCE
Confidence 4568999999999999999999964 3 57999999999999999999999887 4899999999877666 5 999
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 121 v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
|+.|.| .++..++.+.++++.+ ..+++..++.+++....
T Consensus 167 v~LDmp----~PW~~le~~~~~Lkpg---g~~~~y~P~veQv~kt~ 205 (256)
T COG2519 167 VFLDLP----DPWNVLEHVSDALKPG---GVVVVYSPTVEQVEKTV 205 (256)
T ss_pred EEEcCC----ChHHHHHHHHHHhCCC---cEEEEEcCCHHHHHHHH
Confidence 999999 5565555555555554 45555666766666665
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=6.8e-11 Score=102.51 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++.|++..|. +++++++|+....... . ||+|
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~-~---fD~V 322 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE-Q---PDAI 322 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC-C---CCEE
Confidence 3457789999999999999888864 245999999999999999999999888 6899999998765322 4 9999
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++|||+...
T Consensus 323 l~D~Pcsg~ 331 (445)
T PRK14904 323 LLDAPCTGT 331 (445)
T ss_pred EEcCCCCCc
Confidence 999998543
No 112
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.31 E-value=1e-10 Score=92.62 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+.+....+. ++.+..+|+.. .... ||+|++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~---fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGR---FDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCC---cCEEEE
Confidence 35678999999999999999998765 799999999999999999887766 68899999432 2224 999998
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
.-.+++.........++.+.+..++.+++++.+.+
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 77765543333445566666665666666665544
No 113
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.30 E-value=1.8e-11 Score=94.55 Aligned_cols=91 Identities=27% Similarity=0.382 Sum_probs=67.2
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++.+|+|++||.|.+++.+++. ....|+++|++|.+++.+++|++.|++ .+.++++|+.++.. ... ||.|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~---~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK---FDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT----EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc---cCEEEE
Confidence 47889999999999999999984 356899999999999999999999998 58999999998876 324 999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
|.|.. ...++..++...+
T Consensus 176 ~lp~~------~~~fl~~~~~~~~ 193 (200)
T PF02475_consen 176 NLPES------SLEFLDAALSLLK 193 (200)
T ss_dssp --TSS------GGGGHHHHHHHEE
T ss_pred CChHH------HHHHHHHHHHHhc
Confidence 99943 3367777777655
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=4.1e-11 Score=103.91 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=69.3
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|..++.+++. +.++|+++|+++.+++.+++|++.+|+ +++++++|+.+...... ++||+|
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~--~~fD~V 324 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA--EKFDKI 324 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc--ccCCEE
Confidence 3456789999999999999999975 356999999999999999999999987 68999999987642211 239999
Q ss_pred EEcCCCCC
Q 027945 122 VMNPPFGT 129 (216)
Q Consensus 122 ~~npp~~~ 129 (216)
++|||+..
T Consensus 325 l~D~Pcsg 332 (444)
T PRK14902 325 LVDAPCSG 332 (444)
T ss_pred EEcCCCCC
Confidence 99999754
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-10 Score=90.02 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
+-..+++...|+..+ ...++.+|||||||||..+..+++... +|+.+|.++...+.|+.|++..|. ++.++++|
T Consensus 54 tis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 54 TISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred eecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence 334466777666655 456889999999999999999999754 999999999999999999999999 89999999
Q ss_pred cccccccccCCCcccEEEEcCC
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp 126 (216)
.......... ||.|+..-.
T Consensus 129 G~~G~~~~aP---yD~I~Vtaa 147 (209)
T COG2518 129 GSKGWPEEAP---YDRIIVTAA 147 (209)
T ss_pred cccCCCCCCC---cCEEEEeec
Confidence 9886665445 999998544
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=8.3e-11 Score=101.41 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc-cccCCCcccE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RVCSVGHVDT 120 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~~fD~ 120 (216)
...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++..|+ +++++++|+..+.. ..+. ||.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~---fD~ 310 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDT---FDR 310 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhcc---CCE
Confidence 4457789999999999999999875 356999999999999999999999988 68999999987642 2223 999
Q ss_pred EEEcCCCCCC
Q 027945 121 VVMNPPFGTR 130 (216)
Q Consensus 121 v~~npp~~~~ 130 (216)
|++|||+...
T Consensus 311 Vl~DaPCsg~ 320 (431)
T PRK14903 311 ILVDAPCTSL 320 (431)
T ss_pred EEECCCCCCC
Confidence 9999999654
No 117
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=2.6e-10 Score=88.34 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
...++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|++.++. +++++.+|+.+..... ...+|.++
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~--~~~~d~v~ 114 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL--APAPDRVC 114 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC--CCCCCEEE
Confidence 3356789999999999999999864 346999999999999999999988877 7899999986532211 11278887
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+.. ......++.+.+.++
T Consensus 115 ~~~~------~~~~~~l~~~~~~Lk 133 (196)
T PRK07402 115 IEGG------RPIKEILQAVWQYLK 133 (196)
T ss_pred EECC------cCHHHHHHHHHHhcC
Confidence 7532 122466777776655
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.27 E-value=1.6e-10 Score=91.86 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (216)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~ 108 (216)
...+|..+... .++++|||+|||+|..++.+++. +.++|+++|+++++++.|++|++.+|+ +++++.+|+.+.
T Consensus 56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 34444444432 36779999999999988888764 356999999999999999999999988 699999999886
Q ss_pred cccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 109 EWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 109 ~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
.... ...++||+|++|.. +..+...+..+.+..+ +++.++
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence 4331 01235999999865 3445566777777665 444443
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=1.1e-10 Score=102.24 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
..++.+|||+|||+|..++.+++....+|+|+|+++.+++.|+.+....+.++++.++|+...+.+... ||+|++.-
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~I~s~~ 340 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS---FDVIYSRD 340 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC---EEEEEECC
Confidence 346779999999999999999975445999999999999999998765544789999999887654434 99999987
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+.+.. .....++++.+.++
T Consensus 341 ~l~h~~--d~~~~l~~~~r~Lk 360 (475)
T PLN02336 341 TILHIQ--DKPALFRSFFKWLK 360 (475)
T ss_pred cccccC--CHHHHHHHHHHHcC
Confidence 776653 23466777777765
No 120
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=2.9e-11 Score=106.91 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--ccccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~ 123 (216)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+.+....+.++.++++|+.+++ +...+ ||+|++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS---FDvVVs 493 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES---VDTIVY 493 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC---EEEEEE
Confidence 36789999999999999888864 4569999999999999999988766667888999998765 33334 999999
Q ss_pred cCCCCCCC-----------CCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRK-----------KGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~-----------~~~~~~~l~~~~~~~~ 147 (216)
+++++... .......++++.+.++
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK 528 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK 528 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 99887431 1223567777777765
No 121
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.27 E-value=1e-10 Score=95.06 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++....+. +++++.+|+.+++..+.. ||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~---fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNS---VDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCc---eeEEE
Confidence 347789999999999988877754 4 34899999999999999999988776 789999999887654434 99999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++..++... .....++++.+.++
T Consensus 152 ~~~v~~~~~--d~~~~l~~~~r~Lk 174 (272)
T PRK11873 152 SNCVINLSP--DKERVFKEAFRVLK 174 (272)
T ss_pred EcCcccCCC--CHHHHHHHHHHHcC
Confidence 998876542 33467777877765
No 122
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.27 E-value=3.2e-11 Score=109.75 Aligned_cols=101 Identities=27% Similarity=0.407 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-----------------------------------
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG----------------------------------- 70 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~----------------------------------- 70 (216)
-|..+.+++.||....+ ..++..++|++||+|.+.++.+...
T Consensus 171 Apl~etlAaa~l~~a~w---~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 171 APLKENLAAAILLRSGW---PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCcHHHHHHHHHHcCC---CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 44456777777754422 1356799999999999999887521
Q ss_pred --------CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 71 --------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 71 --------~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
..+++|+|+|+.+++.|+.|+..+|+ .+++.++|+.+..... ..++||+|++||||+..
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGER 316 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCc
Confidence 12699999999999999999999998 4899999999876543 12349999999999876
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=9.7e-11 Score=101.23 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=69.7
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccccc-CCCcccE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVC-SVGHVDT 120 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~fD~ 120 (216)
...++.+|||+|||+|..+..+++. +.++|+++|+++.+++.+++|++.+|. +++++++|+........ ..++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 4567889999999999999999875 245999999999999999999999998 78999999987652110 1124999
Q ss_pred EEEcCCCCC
Q 027945 121 VVMNPPFGT 129 (216)
Q Consensus 121 v~~npp~~~ 129 (216)
|++|||...
T Consensus 329 Vl~DaPCSg 337 (434)
T PRK14901 329 ILLDAPCSG 337 (434)
T ss_pred EEEeCCCCc
Confidence 999999753
No 124
>PRK06202 hypothetical protein; Provisional
Probab=99.26 E-value=6.9e-11 Score=93.94 Aligned_cols=100 Identities=23% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.++.+|||+|||+|.++..+++. | ..+++|+|+++.+++.|+.+....+ +++...+....+..+.+ ||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~l~~~~~~---fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--VTFRQAVSDELVAEGER---FDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--CeEEEEecccccccCCC---ccEE
Confidence 45679999999999998888752 3 3489999999999999998876544 44555555444433334 9999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (216)
+++..+++..+......++++.+..++.++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~ 163 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALARRLVL 163 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcCeeEE
Confidence 999999887554445788888888774333
No 125
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.26 E-value=1.5e-10 Score=98.30 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 111 (216)
-+...+..+...+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. +..+++..+|+.+.
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l--- 225 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---
Confidence 3444555555555556788999999999999999997644499999999999999999885 34578888888654
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+. ||.|++...+++........+++++.+.++
T Consensus 226 ~~~---fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk 258 (383)
T PRK11705 226 NGQ---FDRIVSVGMFEHVGPKNYRTYFEVVRRCLK 258 (383)
T ss_pred CCC---CCEEEEeCchhhCChHHHHHHHHHHHHHcC
Confidence 224 999999888776544334566777776665
No 126
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.2e-11 Score=94.41 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=80.6
Q ss_pred cccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 027945 20 KVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI 98 (216)
Q Consensus 20 ~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~ 98 (216)
..+++| |-........++..+ ...++.+|||+|+|.|+++..+++++. +|+++|+|+..++..++..... .++
T Consensus 5 ~K~~GQnFL~d~~v~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~-~n~ 78 (259)
T COG0030 5 NKRLGQNFLIDKNVIDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY-DNL 78 (259)
T ss_pred CCCcccccccCHHHHHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc-cce
Confidence 455666 555555555544443 444678999999999999999999765 8999999999999999987622 279
Q ss_pred EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
+++++|+....+.... .++.|++|.||+-.
T Consensus 79 ~vi~~DaLk~d~~~l~--~~~~vVaNlPY~Is 108 (259)
T COG0030 79 TVINGDALKFDFPSLA--QPYKVVANLPYNIS 108 (259)
T ss_pred EEEeCchhcCcchhhc--CCCEEEEcCCCccc
Confidence 9999999998877421 28999999999866
No 127
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.25 E-value=5.7e-11 Score=93.06 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCeEEEEccccccccccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWRVC 113 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~~~ 113 (216)
.++.+|||+|||.|..++.+|++|. +|+|+|+|+.+++.+...... .+.+++++++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 3567999999999999999999887 899999999999986432211 1226899999999876431
Q ss_pred CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++||.|+-.-.+++........+++.+.+.++
T Consensus 111 -~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk 143 (213)
T TIGR03840 111 -LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP 143 (213)
T ss_pred -CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC
Confidence 124999987666666655555566666666654
No 128
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.24 E-value=1.7e-10 Score=95.99 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945 32 IASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 109 (216)
+...+...++..... .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++.... +++++.+|+.+.+
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp 173 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLP 173 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCC
Confidence 444444444443222 35679999999999999988865 4569999999999999999886532 5788999998876
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 110 WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 110 ~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
...+. ||+|+++..++... .....++++.+.++
T Consensus 174 ~~~~s---FDvVIs~~~L~~~~--d~~~~L~e~~rvLk 206 (340)
T PLN02490 174 FPTDY---ADRYVSAGSIEYWP--DPQRGIKEAYRVLK 206 (340)
T ss_pred CCCCc---eeEEEEcChhhhCC--CHHHHHHHHHHhcC
Confidence 65445 99999988876653 23456777777765
No 129
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=7e-11 Score=97.66 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
..|.+|||++||.|.+++.+|+.+...|+++|+||.+++.+++|++.|++ .++++++|+.+....... +|.|+++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~---aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV---ADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc---CCEEEeC
Confidence 35899999999999999999998876799999999999999999999999 489999999998877545 9999999
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcC
Q 027945 125 PPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.|. ...+++..+++...
T Consensus 264 ~p~------~a~~fl~~A~~~~k 280 (341)
T COG2520 264 LPK------SAHEFLPLALELLK 280 (341)
T ss_pred CCC------cchhhHHHHHHHhh
Confidence 883 33467777766654
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=1.5e-10 Score=99.88 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=66.8
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCe--EEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDI--DFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++.|++..|..+ .+..+|........ ..++||.|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-~~~~fD~V 313 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-ENEQFDRI 313 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-cccccCEE
Confidence 4567889999999999999999975 44699999999999999999999988754 44667765543210 11249999
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++|||+...
T Consensus 314 llDaPcSg~ 322 (426)
T TIGR00563 314 LLDAPCSAT 322 (426)
T ss_pred EEcCCCCCC
Confidence 999998754
No 131
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.23 E-value=9.8e-11 Score=92.90 Aligned_cols=93 Identities=26% Similarity=0.274 Sum_probs=72.9
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
..+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+... ++.++.+|+.+.+..... ||+|+++-
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~---fD~vi~~~ 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLEDSS---FDLIVSNL 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCCCc---eeEEEEhh
Confidence 345799999999999999999865 45789999999999999887652 578899999887655444 99999988
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+++.. .....++++.+..+
T Consensus 107 ~l~~~~--~~~~~l~~~~~~L~ 126 (240)
T TIGR02072 107 ALQWCD--DLSQALSELARVLK 126 (240)
T ss_pred hhhhcc--CHHHHHHHHHHHcC
Confidence 876652 23456677666654
No 132
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.23 E-value=2.7e-10 Score=89.27 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=84.5
Q ss_pred cCCCCCCEEEEecCCcchHHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccc
Q 027945 44 FGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRV 112 (216)
Q Consensus 44 ~~~~~~~~vLD~g~G~G~~~~~l~~~-~~------~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~ 112 (216)
+.+.++.++||++||||.++..+.++ +. .+|+.+|+||+++..++++....+. .+.++.+|++++++++
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 34567789999999999998888865 23 6999999999999999999977655 3899999999999988
Q ss_pred cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
.+ ||...+ .|+-+......+.++++.+.++ +..|.+
T Consensus 176 ~s---~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 176 DS---FDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred Cc---ceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 77 999887 4555555566688999998876 444443
No 133
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.23 E-value=1.7e-10 Score=87.71 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=68.8
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
+...-.++||+|||.|.++..++.+ +.+++++|+++.+++.|++++.... +++++++|+-+..+.. . ||+|++.
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~-~---FDLIV~S 113 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEG-R---FDLIVLS 113 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-----EEEEEEE
T ss_pred CccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCC-C---eeEEEEe
Confidence 4445569999999999999999987 5699999999999999999987643 7999999997764433 4 9999987
Q ss_pred CCCCCCCCC-CCHHHHHHHHhhcC
Q 027945 125 PPFGTRKKG-VDMDFLSMALKVAS 147 (216)
Q Consensus 125 pp~~~~~~~-~~~~~l~~~~~~~~ 147 (216)
-.+++.... .....+..+...+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~ 137 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALA 137 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhC
Confidence 776666442 33345666666654
No 134
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.22 E-value=2.9e-10 Score=90.29 Aligned_cols=96 Identities=25% Similarity=0.324 Sum_probs=74.7
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.++.++..++. ++.++.+|+.+.+..... ||+|+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~I~ 126 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS---FDAVT 126 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC---ccEEE
Confidence 466899999999999999999765 37999999999999999999876544 688999999886654334 99999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++...+.. ......++.+.+.++
T Consensus 127 ~~~~l~~~--~~~~~~l~~~~~~L~ 149 (239)
T PRK00216 127 IAFGLRNV--PDIDKALREMYRVLK 149 (239)
T ss_pred EecccccC--CCHHHHHHHHHHhcc
Confidence 86555443 234566777766655
No 135
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.22 E-value=4.9e-11 Score=90.43 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++.+|||+|||.|.+...+........+|+|++++.+..+..+ .+.++++|+.+..... .+..||+||++-.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f-~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADF-PDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhC-CCCCccEEehHhH
Confidence 47789999999999999999875555999999999998888777 5788999998855332 2334999998644
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945 127 FGTRKKGVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (216)
.... ......++++++.++..+.
T Consensus 85 LQ~~--~~P~~vL~EmlRVgr~~IV 107 (193)
T PF07021_consen 85 LQAV--RRPDEVLEEMLRVGRRAIV 107 (193)
T ss_pred HHhH--hHHHHHHHHHHHhcCeEEE
Confidence 3322 2234678889998884443
No 136
>PRK04266 fibrillarin; Provisional
Probab=99.22 E-value=4.5e-10 Score=88.73 Aligned_cols=113 Identities=17% Similarity=0.103 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
-...+..++... ..+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+.++++.. .++.++.+|+..
T Consensus 54 r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~ 131 (226)
T PRK04266 54 RSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARK 131 (226)
T ss_pred ccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCC
Confidence 345666666555 3345567889999999999999999976 3458999999999999887776643 268889999875
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
........++||+|+++.+. .......++.+.+.++
T Consensus 132 ~~~~~~l~~~~D~i~~d~~~----p~~~~~~L~~~~r~LK 167 (226)
T PRK04266 132 PERYAHVVEKVDVIYQDVAQ----PNQAEIAIDNAEFFLK 167 (226)
T ss_pred cchhhhccccCCEEEECCCC----hhHHHHHHHHHHHhcC
Confidence 21110011239999987551 1111234556655554
No 137
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.22 E-value=5.2e-11 Score=92.59 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 106 (216)
.....+|..+... .+.++|||+||++|.-++.+++. + .++++.+|++++..+.|+++++..|. +++++.+|+.
T Consensus 31 ~~~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 31 PETGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 3444556555543 36679999999999999999974 2 46999999999999999999999988 7999999999
Q ss_pred cccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945 107 NLEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT 156 (216)
Q Consensus 107 ~~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 156 (216)
+..... ...++||+||.|-. +..+..++..+.+..+ +.+.++.+.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred hhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccc
Confidence 865432 11246999999875 6678888888888766 566655544
No 138
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.21 E-value=7.7e-11 Score=90.34 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=100.9
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~ 100 (216)
...+-|++.++..+........ ....|+|..||.|+.++..+..++ .|+++|+||.-+.+|++|++-.|+ +++|
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 3345577888888887776542 456899999999999999998666 999999999999999999999999 7999
Q ss_pred EEccccccccccc-CCCcccEEEEcCCCCCCCC-------------CCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 101 VQCDIRNLEWRVC-SVGHVDTVVMNPPFGTRKK-------------GVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 101 ~~~d~~~~~~~~~-~~~~fD~v~~npp~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
+++|+++...... ....+|+|+..||++.+.. ..-.+.++...++.+...+.+-......++....
T Consensus 148 I~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~~~~fk~s~kispnv~~flprntdv~qls~~~ 227 (263)
T KOG2730|consen 148 ICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMGTKIFKSSLKISPNVAYFLPRNTDVNQLARLA 227 (263)
T ss_pred EechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhHHHHHHhhhhcCcchhhhCCcchhHHHHHHhc
Confidence 9999998765541 1123679999999987621 1122344555555555555544444444444433
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.21 E-value=2.2e-10 Score=89.37 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d 104 (216)
+.+++.+.++..+ ...++.+|||+|||+|..+..++.. + ...|+++|+++..++.|+.+++..+. +++++++|
T Consensus 56 s~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 56 SAPSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp --HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred hHHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 3355666666554 4568899999999999999999976 3 34799999999999999999999988 89999999
Q ss_pred cccccccccCCCcccEEEEcCC
Q 027945 105 IRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~npp 126 (216)
.......... ||.|+++..
T Consensus 132 g~~g~~~~ap---fD~I~v~~a 150 (209)
T PF01135_consen 132 GSEGWPEEAP---FDRIIVTAA 150 (209)
T ss_dssp GGGTTGGG-S---EEEEEESSB
T ss_pred hhhccccCCC---cCEEEEeec
Confidence 8876555445 999999765
No 140
>PLN02476 O-methyltransferase
Probab=99.21 E-value=3.9e-10 Score=91.14 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (216)
......+|..+... .+.++|||+|+++|..++.+++. + ..+++++|.+++.++.|+.|++..|+ +++++.+|+
T Consensus 103 ~~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 103 SPDQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred CHHHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 44555555555543 36789999999999999999974 2 45899999999999999999999998 699999999
Q ss_pred ccccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945 106 RNLEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 155 (216)
Q Consensus 106 ~~~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 155 (216)
.+..... ...++||+||.|.+ +..+..+++.+++..+ +++.++.+
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8865432 11245999999987 5667788888887765 55555433
No 141
>PRK00811 spermidine synthase; Provisional
Probab=99.20 E-value=1.9e-10 Score=93.97 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=76.6
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC------CCeEEEEcccccccccccCCCccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE------LDIDFVQCDIRNLEWRVCSVGHVD 119 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~fD 119 (216)
..+++||++|||+|..+..++++ +..+|+++|+|+.+++.|++++...+ .+++++.+|+..+... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCccc
Confidence 35679999999999999999987 56799999999999999999886431 2789999999886543 223599
Q ss_pred EEEEcC--CCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 120 TVVMNP--PFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 120 ~v~~np--p~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
+|++|. |+.....-...++++.+.+.++ +++++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999985 4322111112456777777665 445444
No 142
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=89.32 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=86.2
Q ss_pred HHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCc
Q 027945 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH 117 (216)
Q Consensus 39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 117 (216)
.++...+..+..+|.|+|||.|..+..++++ +.+.++|+|.|++|++.|+.++. +++|..+|+.++.... .
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p~~-~--- 92 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKPEQ-P--- 92 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCCCC-c---
Confidence 3344445667789999999999999999976 67799999999999999988865 5899999999887765 4
Q ss_pred ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945 118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 158 (216)
Q Consensus 118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 158 (216)
+|++++|-.++.. ....+.+.+.+..+. +++..+--|++
T Consensus 93 ~dllfaNAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 93 TDLLFANAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cchhhhhhhhhhc--cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999887 344556777766654 55555555543
No 143
>PRK08317 hypothetical protein; Provisional
Probab=99.18 E-value=1.1e-09 Score=86.86 Aligned_cols=98 Identities=26% Similarity=0.280 Sum_probs=74.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
...++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++.+....+.++.+..+|+...+..... ||+|+
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~v~ 92 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS---FDAVR 92 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC---ceEEE
Confidence 44577899999999999999999752 46999999999999999988444334789999998876654434 99999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++-.+++.. .....++++.+.++
T Consensus 93 ~~~~~~~~~--~~~~~l~~~~~~L~ 115 (241)
T PRK08317 93 SDRVLQHLE--DPARALAEIARVLR 115 (241)
T ss_pred EechhhccC--CHHHHHHHHHHHhc
Confidence 987776552 23456666666654
No 144
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.16 E-value=3e-10 Score=89.77 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccc
Q 027945 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (216)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~ 111 (216)
..++..+.......+...|||+|.|||.++..+...|. +|+++|+|+.++....++.+.... +.+++++|+.....+
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 34445555554556788999999999999999999755 999999999999999999876553 689999999998877
Q ss_pred ccCCCcccEEEEcCCCCCC
Q 027945 112 VCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 112 ~~~~~~fD~v~~npp~~~~ 130 (216)
. ||.||+|.||.-.
T Consensus 123 ~-----fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 123 R-----FDGCVSNLPYQIS 136 (315)
T ss_pred c-----cceeeccCCcccc
Confidence 5 9999999999765
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.16 E-value=1.9e-10 Score=87.40 Aligned_cols=131 Identities=22% Similarity=0.194 Sum_probs=72.8
Q ss_pred cccCCCCHHHHHHHHHHHHh--hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC--C-
Q 027945 23 LEQYPTGPHIASRMLYTAEN--SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE--L- 96 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~--~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~--~- 96 (216)
..-||.+..++..++..... .....++.+|||+|||+|..++.+++. +..+|+.+|.++ .++.++.|++.|+ .
T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~ 96 (173)
T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD 96 (173)
T ss_dssp -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----
T ss_pred EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc
Confidence 44466666666666665421 112457889999999999999999988 677999999998 9999999999987 2
Q ss_pred -CeEEEEccccccc-ccccCCCcccEEE-EcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEec
Q 027945 97 -DIDFVQCDIRNLE-WRVCSVGHVDTVV-MNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK 155 (216)
Q Consensus 97 -~~~~~~~d~~~~~-~~~~~~~~fD~v~-~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 155 (216)
++.+...||.+.. .......+||+|+ +|.-|...........+..++...+ .+++.+.
T Consensus 97 ~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~-~vl~~~~ 157 (173)
T PF10294_consen 97 GRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG-KVLLAYK 157 (173)
T ss_dssp ---EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T-TEEEEEE
T ss_pred ccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC-EEEEEeC
Confidence 7888888887633 1111223599999 5777764322222333443333333 4555444
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=1.4e-09 Score=84.73 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=94.6
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDF 100 (216)
Q Consensus 25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~ 100 (216)
..|...+..-..|..++.. .+.++|||+|++.|.-++.++.. + .++++++|++++.++.|++|++..|+ +++.
T Consensus 39 ~~pi~~~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 39 GVPIIDPETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred CCCCCChhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 3455545666666666543 47789999999999999999974 3 56999999999999999999999998 5788
Q ss_pred EE-cccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945 101 VQ-CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 155 (216)
Q Consensus 101 ~~-~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 155 (216)
+. +|+.+..... ..++||+||.|-- +..+..++..+.+.++ +.+.++.|
T Consensus 116 ~~~gdal~~l~~~-~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 116 LLGGDALDVLSRL-LDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EecCcHHHHHHhc-cCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 88 5888866542 3345999999853 7788899999998876 55555443
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.15 E-value=4.7e-10 Score=86.74 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=69.4
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--ccccCCCcccEEEEcC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVMNP 125 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~np 125 (216)
++.+|||+|||+|.++..+++.....++|+|+++.+++.++.+ +++++++|+.+.. ....+ ||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~s---fD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKS---FDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCC---cCEEEEhh
Confidence 5679999999999999999876555889999999999888653 4678888887532 22224 99999999
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCC
Q 027945 126 PFGTRKKGVDMDFLSMALKVASQ 148 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~~ 148 (216)
++++.. .....++++.+.++.
T Consensus 84 ~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcCc--CHHHHHHHHHHhCCe
Confidence 987763 345678888887663
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=5.7e-10 Score=87.75 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=71.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCeEEEEccccccccccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWRVC 113 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~~~ 113 (216)
.++.+|||+|||.|..++.+|++|. +|+|+|+++.+++.+...... ...++++.++|++++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3567999999999999999999887 899999999999987432111 0126889999999875442
Q ss_pred CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++||.|+---.+++........+++.+.+.++
T Consensus 114 -~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~ 146 (218)
T PRK13255 114 -LADVDAVYDRAALIALPEEMRERYVQQLAALLP 146 (218)
T ss_pred -CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence 124999996555555555555666777766654
No 149
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=3e-10 Score=99.37 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc--ccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN--LEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~fD~v~ 122 (216)
...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++..... ..+++++++|+.. .+....+ ||+|+
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~---fD~I~ 108 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISDGS---VDLIF 108 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCCCC---EEEEe
Confidence 33466799999999999999999864 4999999999999887653221 1268899999864 3333334 99999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++.++++........+++++.+.++
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk 133 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLK 133 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcC
Confidence 9999888755445677888877765
No 150
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=5.9e-10 Score=92.32 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=67.6
Q ss_pred HHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCC
Q 027945 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSV 115 (216)
Q Consensus 39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 115 (216)
.+...+...++.+|||+|||+|.++..+++.. ...|+++|+++.+++.|+++++.++. ++.++++|+.+.......
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~- 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP- 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC-
Confidence 33333344577899999999999999999753 24799999999999999999998887 689999998776544434
Q ss_pred CcccEEEEcCC
Q 027945 116 GHVDTVVMNPP 126 (216)
Q Consensus 116 ~~fD~v~~npp 126 (216)
||+|+++..
T Consensus 150 --fD~Ii~~~g 158 (322)
T PRK13943 150 --YDVIFVTVG 158 (322)
T ss_pred --ccEEEECCc
Confidence 999998643
No 151
>PLN03075 nicotianamine synthase; Provisional
Probab=99.14 E-value=1.7e-09 Score=88.05 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCcchHH-HHHH-Hc-CCCeEEEEeCCHHHHHHHHHHHHh-cCC--CeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGTLG-AAAT-LL-GADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~-~~l~-~~-~~~~v~~~D~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
.++++|+|+|||.|.++ +.++ ++ +..+++++|+|+++++.|+++++. .++ +++|..+|+.+....... ||+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~---FDl 198 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE---YDV 198 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC---cCE
Confidence 37789999999988553 3333 33 456899999999999999999964 565 699999999886433224 999
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945 121 VVMNPPFGTRKKGVDMDFLSMALKVASQ 148 (216)
Q Consensus 121 v~~npp~~~~~~~~~~~~l~~~~~~~~~ 148 (216)
|+++ ..++..+....+.++.+.+..++
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkP 225 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAP 225 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCC
Confidence 9999 66665556677788888887663
No 152
>PRK10742 putative methyltransferase; Provisional
Probab=99.13 E-value=1.4e-09 Score=85.96 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCCCC--EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------C--C--CeEEEEccccccccccc
Q 027945 46 DVSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E--L--DIDFVQCDIRNLEWRVC 113 (216)
Q Consensus 46 ~~~~~--~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~--~--~~~~~~~d~~~~~~~~~ 113 (216)
..++. +|||+.+|+|..++.++.+|+ +|+++|.++.+....+.+++.. + + +++++++|+.++.....
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 34555 899999999999999999988 5999999999999999999874 2 1 58899999998775431
Q ss_pred CCCcccEEEEcCCCCCCCCCC
Q 027945 114 SVGHVDTVVMNPPFGTRKKGV 134 (216)
Q Consensus 114 ~~~~fD~v~~npp~~~~~~~~ 134 (216)
..||+|++||||....+..
T Consensus 163 --~~fDVVYlDPMfp~~~ksa 181 (250)
T PRK10742 163 --PRPQVVYLDPMFPHKQKSA 181 (250)
T ss_pred --CCCcEEEECCCCCCCcccc
Confidence 1499999999998875554
No 153
>PRK04457 spermidine synthase; Provisional
Probab=99.13 E-value=2e-09 Score=87.06 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++++|||+|||+|.++..+++. +..+++++|+|+.+++.|+++....+. +++++++|+.++.... ..+||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--CCCCCEEEE
Confidence 35679999999999999999865 556999999999999999999875543 7899999998765432 134999999
Q ss_pred cCCCCCCC--C-CCCHHHHHHHHhhcC-CcEEEE
Q 027945 124 NPPFGTRK--K-GVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 124 npp~~~~~--~-~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
|. |.... . -...++++.+.+.+. ++++++
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 84 33221 1 123688888888765 444443
No 154
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.11 E-value=2.4e-09 Score=85.01 Aligned_cols=111 Identities=27% Similarity=0.353 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 111 (216)
+....+..+.......++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.+....+..+++...|+.+.+..
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE 110 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh
Confidence 3333344444443355778999999999999999998765 899999999999999999887766778888888766422
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
. .++||+|++.-.+.... .....++.+.+...
T Consensus 111 ~--~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~ 142 (233)
T PRK05134 111 H--PGQFDVVTCMEMLEHVP--DPASFVRACAKLVK 142 (233)
T ss_pred c--CCCccEEEEhhHhhccC--CHHHHHHHHHHHcC
Confidence 1 23599999976665542 23345666666553
No 155
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.10 E-value=9.2e-10 Score=86.87 Aligned_cols=92 Identities=24% Similarity=0.199 Sum_probs=72.3
Q ss_pred CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
++|||+|||+|..+..+++. +..+|+|+|+++.+++.++.++...+. +++++.+|+...+... . ||+|++.-.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~---fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-T---YDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-C---CCEeehHHH
Confidence 37999999999999999875 345899999999999999999988776 6899999986654432 4 999998766
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+++.. ....+++++.+.++
T Consensus 77 l~~~~--~~~~~l~~~~~~Lk 95 (224)
T smart00828 77 IHHIK--DKMDLFSNISRHLK 95 (224)
T ss_pred HHhCC--CHHHHHHHHHHHcC
Confidence 65542 23466777766654
No 156
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.09 E-value=1.4e-09 Score=74.00 Aligned_cols=92 Identities=28% Similarity=0.379 Sum_probs=68.2
Q ss_pred EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc-cccCCCcccEEEEcCCCC
Q 027945 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~~fD~v~~npp~~ 128 (216)
+++|+|||+|.++..+++....+++++|+++.+++.+++.....+. +++++..|+.+... ... ++|+|+++++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADE---SFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCC---ceEEEEEcccee
Confidence 4899999999999999985566999999999999999864444333 68999999988764 222 499999999987
Q ss_pred CCCCCCCHHHHHHHHhhc
Q 027945 129 TRKKGVDMDFLSMALKVA 146 (216)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~ 146 (216)
.. .......++.+.+..
T Consensus 78 ~~-~~~~~~~l~~~~~~l 94 (107)
T cd02440 78 HL-VEDLARFLEEARRLL 94 (107)
T ss_pred eh-hhHHHHHHHHHHHHc
Confidence 53 123334455544443
No 157
>PRK04148 hypothetical protein; Provisional
Probab=99.09 E-value=3.3e-09 Score=76.34 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=59.9
Q ss_pred CCCCCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 45 GDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
...++.++||+|||+|. ++..+++.|. +|+++|+++.+++.++.+ .+.++.+|+++..... ...+|+|++
T Consensus 13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~--y~~a~liys 83 (134)
T PRK04148 13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEI--YKNAKLIYS 83 (134)
T ss_pred ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHH--HhcCCEEEE
Confidence 34456899999999996 8889998776 999999999999988877 3789999999876653 223999995
Q ss_pred -cCC
Q 027945 124 -NPP 126 (216)
Q Consensus 124 -npp 126 (216)
.||
T Consensus 84 irpp 87 (134)
T PRK04148 84 IRPP 87 (134)
T ss_pred eCCC
Confidence 776
No 158
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.08 E-value=3.6e-09 Score=86.10 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=57.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.+..+|||+|||+|.++..+++.. ...++|+|+++.+++.|+++.. ++.+.++|+.++++.+++ ||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~~s---fD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFADQS---LDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcCCc---eeEEE
Confidence 355789999999999999888642 2379999999999999987642 578899999888776655 99999
Q ss_pred Ec
Q 027945 123 MN 124 (216)
Q Consensus 123 ~n 124 (216)
+.
T Consensus 157 ~~ 158 (272)
T PRK11088 157 RI 158 (272)
T ss_pred Ee
Confidence 74
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.07 E-value=1.4e-09 Score=88.08 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCCEEEEecCCcch----HHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHh-------------------cC---
Q 027945 48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD-------------------LE--- 95 (216)
Q Consensus 48 ~~~~vLD~g~G~G~----~~~~l~~~~------~~~v~~~D~~~~~~~~a~~~~~~-------------------~~--- 95 (216)
++.+|+|+|||+|. +++.+++.. ..+|+|+|+|+.+++.|+..+.. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 444444431 24899999999999999885410 00
Q ss_pred ------CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945 96 ------LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146 (216)
Q Consensus 96 ------~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~ 146 (216)
.++++.++|+.+.+...+. ||+|+|.-.+++.........++++.+.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~---fD~I~crnvl~yf~~~~~~~~l~~l~~~L 232 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGD---FDLIFCRNVLIYFDEPTQRKLLNRFAEAL 232 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCC---CCEEEechhHHhCCHHHHHHHHHHHHHHh
Confidence 1578999999886654434 99999965544443223333444444433
No 160
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=1.8e-10 Score=86.92 Aligned_cols=129 Identities=22% Similarity=0.209 Sum_probs=90.3
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEE
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~ 102 (216)
...|..+...+..++..- ....+++|||+|+|+|..++..++.|...|+..|++|...+.++.|++.|++.+.+..
T Consensus 58 a~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~ 133 (218)
T COG3897 58 AFAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH 133 (218)
T ss_pred HHHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee
Confidence 334444444444443322 3458899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945 103 CDIRNLEWRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK 164 (216)
Q Consensus 103 ~d~~~~~~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (216)
.|... ... . ||+++. |-.|.+.-....+.++..+... ...+++..+.+.++..
T Consensus 134 ~d~~g-~~~--~---~Dl~LagDlfy~~~~a~~l~~~~~~l~~~---g~~vlvgdp~R~~lpk 187 (218)
T COG3897 134 ADLIG-SPP--A---FDLLLAGDLFYNHTEADRLIPWKDRLAEA---GAAVLVGDPGRAYLPK 187 (218)
T ss_pred ccccC-CCc--c---eeEEEeeceecCchHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCch
Confidence 99876 332 3 999984 6666655333344444433322 2233355566555443
No 161
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=4.6e-09 Score=82.18 Aligned_cols=83 Identities=23% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcC-CCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945 34 SRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (216)
Q Consensus 34 ~~~l~~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (216)
...+..+...+. ..++.+|||+|||+|..+..++++. ...|+++|+++ +. .. .+++++++|+.+...
T Consensus 36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~----~~v~~i~~D~~~~~~ 105 (209)
T PRK11188 36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI----VGVDFLQGDFRDELV 105 (209)
T ss_pred HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC----CCcEEEecCCCChHH
Confidence 334444444444 3567899999999999999998763 35899999998 10 11 158999999987531
Q ss_pred -----cccCCCcccEEEEcCC
Q 027945 111 -----RVCSVGHVDTVVMNPP 126 (216)
Q Consensus 111 -----~~~~~~~fD~v~~npp 126 (216)
.....++||+|++|+.
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCC
Confidence 0001234999999873
No 162
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.05 E-value=4.2e-09 Score=86.92 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=74.5
Q ss_pred CCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEccccccc-ccccC-CCcccEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLE-WRVCS-VGHVDTV 121 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~-~~~~~-~~~fD~v 121 (216)
++.+|||+|||+|..+..+++.. ..+++++|+|++|++.++.++... ++++.++++|..+.. ..... .....++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 55789999999999999999763 358999999999999999988653 346788999987642 22211 0113455
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEE
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS 152 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~ 152 (216)
+++.+++.........+++++.+.++ +..++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 56666666555555678888877765 34443
No 163
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=3.8e-09 Score=83.07 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-------------hcCCCeEEEEccccccccccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDIDFVQCDIRNLEWRVC 113 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~~~~ 113 (216)
.++.+||++|||.|.....+++.|. +|+|+|+++.+++.+.+... ..+.+++++++|++++.....
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3567999999999999999999888 79999999999999855221 113378999999999864221
Q ss_pred CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
..++||+|+---.|+.........+.+.+.+..+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~ 154 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS 154 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC
Confidence 2235999887667777766666667776666544
No 164
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.04 E-value=6.4e-11 Score=81.50 Aligned_cols=92 Identities=23% Similarity=0.202 Sum_probs=54.2
Q ss_pred EEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 53 LD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
||+|||+|.++..+... +..+++++|+|+.+++.+++++...+. +......+..+..... ..++||+|++.-.+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhhhHhhh
Confidence 79999999999999876 456999999999999999888887664 4444444444432221 11249999998887766
Q ss_pred CCCCCHHHHHHHHhhcC
Q 027945 131 KKGVDMDFLSMALKVAS 147 (216)
Q Consensus 131 ~~~~~~~~l~~~~~~~~ 147 (216)
.....+++.+.+.++
T Consensus 80 --~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLK 94 (99)
T ss_dssp --S-HHHHHHHHTTT-T
T ss_pred --hhHHHHHHHHHHHcC
Confidence 333345555544443
No 165
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.03 E-value=5.6e-09 Score=86.38 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=73.2
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...+. +++++.+|+++...+ . +|+|
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~---~D~v 219 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E---ADAV 219 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C---CCEE
Confidence 3446679999999999999999976 4568999998 7899999999998877 689999999865443 3 7988
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++.-..|...+......++++.+.++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcC
Confidence 76444443333333456777776654
No 166
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.03 E-value=5.2e-10 Score=88.14 Aligned_cols=100 Identities=26% Similarity=0.403 Sum_probs=69.2
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccCCCcccEE
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
|++|||+|||.|.++..|++.|. .|+|+|+++.+++.|+........ ++++.+.|++..- ++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------ccccee
Confidence 57899999999999999999875 999999999999999999544332 2455555555432 239999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS 157 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ 157 (216)
+|--.+++.. ....++..+.+.++ +.+|+..-..
T Consensus 163 vcsevleHV~--dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 163 VCSEVLEHVK--DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eeHHHHHHHh--CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9965554441 12245555555443 4666654443
No 167
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=1.1e-08 Score=83.07 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
..+++||++|||+|.++..+++++ ..+++++|+|+.+++.+++++...+ .+++++.+|..++.... .++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccE
Confidence 345699999999999999888775 6799999999999999999875432 16888899987755432 234999
Q ss_pred EEEcCCCCCCCCCC--CHHHHHHHHhhcC-CcEEEE
Q 027945 121 VVMNPPFGTRKKGV--DMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 121 v~~npp~~~~~~~~--~~~~l~~~~~~~~-~~~~~~ 153 (216)
|++|++........ ..++++.+.+.+. ++++++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 99998854332222 3467777777665 444443
No 168
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.02 E-value=1.1e-08 Score=80.28 Aligned_cols=96 Identities=24% Similarity=0.343 Sum_probs=73.3
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
..++.+|||+|||+|..+..+++... .+++++|+++.+++.++.+.. ...++.++.+|+.+.+...+ +||+|++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~---~~D~i~~ 112 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN---SFDAVTI 112 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC---cEEEEEE
Confidence 34678999999999999999997654 489999999999999998876 22268899999988764433 4999998
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+-.++.. ......++.+.+.++
T Consensus 113 ~~~~~~~--~~~~~~l~~~~~~L~ 134 (223)
T TIGR01934 113 AFGLRNV--TDIQKALREMYRVLK 134 (223)
T ss_pred eeeeCCc--ccHHHHHHHHHHHcC
Confidence 6655443 234456777766654
No 169
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.01 E-value=1e-08 Score=80.77 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=74.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
..+.+|||+|||+|.++..+++.+. +++++|+++.+++.++.++...+. ++.+..+|+.+.+... .++||+|+++-
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehh
Confidence 3577999999999999999988665 799999999999999999988776 6889999988765442 13499999976
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++.. ......++.+.+...
T Consensus 121 ~l~~~--~~~~~~l~~~~~~L~ 140 (224)
T TIGR01983 121 VLEHV--PDPQAFIRACAQLLK 140 (224)
T ss_pred HHHhC--CCHHHHHHHHHHhcC
Confidence 66544 233456666666554
No 170
>PLN02366 spermidine synthase
Probab=99.01 E-value=1.3e-08 Score=83.97 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
..+++||++|||.|.....+++++ ..+|+.+|+|+.+++.|++.+...+ -+++++.+|+..+.... ..++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCE
Confidence 456899999999999999999874 5799999999999999999876431 27999999998765432 1234999
Q ss_pred EEEcCCCCCCCCC--CCHHHHHHHHhhcC-CcEEE
Q 027945 121 VVMNPPFGTRKKG--VDMDFLSMALKVAS-QAVYS 152 (216)
Q Consensus 121 v~~npp~~~~~~~--~~~~~l~~~~~~~~-~~~~~ 152 (216)
|++|.+-...... ...++++.+.+.++ +++++
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 9998653222111 13467777777765 45543
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.00 E-value=6.5e-10 Score=86.11 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=88.2
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
+...+.+|||.|.|-|..++..+++|+.+|+.+|.||..++.|.-|-=..++ .++++.+|+.+..... .+..||+|
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-~D~sfDaI 209 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-DDESFDAI 209 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-CccccceE
Confidence 4557899999999999999999999988999999999999999887644444 5799999999977554 33459999
Q ss_pred EEcCCCCCCCCCCC-HHHHHHHHhhcC--CcEEEEecCcc
Q 027945 122 VMNPPFGTRKKGVD-MDFLSMALKVAS--QAVYSLHKTST 158 (216)
Q Consensus 122 ~~npp~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~~~~~ 158 (216)
+-|||=....-..+ .++.+++.++++ +.+|..+..++
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 99999544433332 367788888765 57776666655
No 172
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.95 E-value=4.7e-09 Score=85.43 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCEEEEecCCcchH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEEccccccccc--ccCCCcccEEE
Q 027945 49 NKVVADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNLEWR--VCSVGHVDTVV 122 (216)
Q Consensus 49 ~~~vLD~g~G~G~~-~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d~~~~~~~--~~~~~~fD~v~ 122 (216)
..++||||+|.-.+ .+..++....+++|+|+|+.+++.|+.|++.| ++ +++++...-....+. ....+.||+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 45899999998755 44444443459999999999999999999999 66 687775532221111 11223599999
Q ss_pred EcCCCCCCCC
Q 027945 123 MNPPFGTRKK 132 (216)
Q Consensus 123 ~npp~~~~~~ 132 (216)
|||||+....
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9999998743
No 173
>PRK03612 spermidine synthase; Provisional
Probab=98.95 E-value=2.5e-08 Score=88.07 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHH--Hh-c-----CCCeEEEEcccccccccccCCCc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENA--AD-L-----ELDIDFVQCDIRNLEWRVCSVGH 117 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~--~~-~-----~~~~~~~~~d~~~~~~~~~~~~~ 117 (216)
.++++|||+|||+|..+..+++++. .+|+++|+|+++++.++++. .. + +.+++++.+|+.++.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC--CCC
Confidence 4567999999999999999998764 79999999999999999842 21 1 126899999998865432 235
Q ss_pred ccEEEEcCCCCCCCC---CCCHHHHHHHHhhcC-CcEEE
Q 027945 118 VDTVVMNPPFGTRKK---GVDMDFLSMALKVAS-QAVYS 152 (216)
Q Consensus 118 fD~v~~npp~~~~~~---~~~~~~l~~~~~~~~-~~~~~ 152 (216)
||+|++|+|...... -...++++.+.+.++ +++++
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 999999988643211 112357777777765 34443
No 174
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=7.1e-09 Score=77.14 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
..++.+|||+|||+|.++..+++.+. +++++|+++.+++. ........+........+. ||+|+++-
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGS---FDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSS---EEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccc---hhhHhhHH
Confidence 35778999999999999999998877 99999999999988 1233333333333333334 99999998
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 027945 126 PFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+++.. ....+++.+.+.++
T Consensus 87 ~l~~~~--d~~~~l~~l~~~Lk 106 (161)
T PF13489_consen 87 VLEHLP--DPEEFLKELSRLLK 106 (161)
T ss_dssp SGGGSS--HHHHHHHHHHHCEE
T ss_pred HHhhcc--cHHHHHHHHHHhcC
Confidence 887774 35577888887765
No 175
>PTZ00146 fibrillarin; Provisional
Probab=98.94 E-value=6.2e-09 Score=84.48 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 108 (216)
.+++.++.-+. .+...++.+|||+|||+|..+..++.. + ...|+++|+++.+.+.+...++.. .++.++.+|+...
T Consensus 116 Klaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 116 KLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred HHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccCh
Confidence 34544444433 334567789999999999999999976 3 458999999987664444433221 2688999998642
Q ss_pred cccccCCCcccEEEEcCC
Q 027945 109 EWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp 126 (216)
.......+.+|+|++|-.
T Consensus 194 ~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhcccCCCCEEEEeCC
Confidence 110001123999999875
No 176
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.92 E-value=6.9e-09 Score=84.76 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc
Q 027945 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV 112 (216)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (216)
-|+.+++..+...++.+++|.+||.|..+..+++.. ..+|+|+|.|+.+++.|+.++.. ..+++++++|+.++....
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence 355566665555677899999999999999999863 46999999999999999998866 347999999999865433
Q ss_pred cC-CCcccEEEEcCCCCC
Q 027945 113 CS-VGHVDTVVMNPPFGT 129 (216)
Q Consensus 113 ~~-~~~fD~v~~npp~~~ 129 (216)
.. ..++|.|++|.-...
T Consensus 85 ~~~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 85 AEGLGKVDGILLDLGVSS 102 (296)
T ss_pred HcCCCccCEEEECCCccc
Confidence 11 014999999876644
No 177
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.91 E-value=5.8e-09 Score=84.43 Aligned_cols=116 Identities=24% Similarity=0.302 Sum_probs=84.5
Q ss_pred CCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945 18 NPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL 96 (216)
Q Consensus 18 ~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~ 96 (216)
++..+++| |-..+.++..++..+ ...++..|||+|+|.|.++..++..+ .+++++|+|+..++..+...... -
T Consensus 3 k~kk~~gQnFL~~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~-~ 76 (262)
T PF00398_consen 3 KPKKSLGQNFLVDPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN-P 76 (262)
T ss_dssp SC-CGCTSSEEEHHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC-S
T ss_pred CCCCCCCcCeeCCHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc-c
Confidence 34455555 445566666666655 33478899999999999999999877 69999999999999999877622 2
Q ss_pred CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHh
Q 027945 97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALK 144 (216)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~ 144 (216)
+++++.+|+.++.....-......|++|.||+.. ...+.+.+.
T Consensus 77 ~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is-----~~il~~ll~ 119 (262)
T PF00398_consen 77 NVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNIS-----SPILRKLLE 119 (262)
T ss_dssp SEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGH-----HHHHHHHHH
T ss_pred cceeeecchhccccHHhhcCCceEEEEEecccch-----HHHHHHHhh
Confidence 7999999999977665111236799999998433 345555555
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=4.7e-08 Score=78.08 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (216)
....+|..++.. .+.++|||+|+++|.-++.+++. ..++++++|.+++..+.|+.+++..|+ +++++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 444555555433 35679999999999999999874 245999999999999999999999987 79999999988
Q ss_pred cccccc----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945 108 LEWRVC----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH 154 (216)
Q Consensus 108 ~~~~~~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 154 (216)
...... ..++||+||.|-- +..+...+..+++..+ ++++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 654421 1245999999854 5667788888777766 4555443
No 179
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.90 E-value=1.3e-09 Score=88.78 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHH-------HHHHHHHhcCC--
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE-------LASENAADLEL-- 96 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~-- 96 (216)
|-.+.++.+++-..........+|+.|.|+..|||.+.+..+..|+ .|+|.|||-.++. ..+.|.+..|.
T Consensus 186 yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~ 264 (421)
T KOG2671|consen 186 YIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS 264 (421)
T ss_pred ccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcc
Confidence 3334445555444444443557899999999999999999999887 9999999988776 35778888886
Q ss_pred -CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 97 -DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 97 -~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
-..+..+|+...+... ...||.|+|||||+.+
T Consensus 265 ~fldvl~~D~sn~~~rs--n~~fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRS--NLKFDAIVCDPPYGVR 297 (421)
T ss_pred hhhheeeecccCcchhh--cceeeEEEeCCCcchh
Confidence 3677889988766543 3469999999999986
No 180
>PRK01581 speE spermidine synthase; Validated
Probab=98.90 E-value=6.8e-08 Score=80.62 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHH--HH---h---cCCCeEEEEcccccccccccCCC
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASEN--AA---D---LELDIDFVQCDIRNLEWRVCSVG 116 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~--~~---~---~~~~~~~~~~d~~~~~~~~~~~~ 116 (216)
...+++||++|||+|.....+.+++ ..+|+++|+|+.+++.|+.. +. . .+-+++++.+|+.++.... .+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SS 225 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CC
Confidence 3456799999999999988888874 57999999999999999962 11 1 1227999999999876442 23
Q ss_pred cccEEEEcCCCCCC--CCCCC-HHHHHHHHhhcC-CcEEEE
Q 027945 117 HVDTVVMNPPFGTR--KKGVD-MDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 117 ~fD~v~~npp~~~~--~~~~~-~~~l~~~~~~~~-~~~~~~ 153 (216)
+||+|++|+|-... ....+ .++++.+.+.+. ++++++
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 59999999863221 11122 457777777765 455443
No 181
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=3.5e-08 Score=75.33 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=71.1
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeE-EEEccccccc-ccccCCCcccEEEEcCC
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLE-WRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~-~~~~d~~~~~-~~~~~~~~fD~v~~npp 126 (216)
..|||+|||+|...-..--.+...|+++|.++.|-+.+.+.++.+.- +++ +++++.+.++ ..+++ +|.|++-..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s---~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGS---YDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCC---eeeEEEEEE
Confidence 46899999999988777744555999999999999999999888755 676 9999999987 44445 999998433
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
. .......+.|++..+.++
T Consensus 155 L--CSve~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 155 L--CSVEDPVKQLNEVRRLLR 173 (252)
T ss_pred E--eccCCHHHHHHHHHHhcC
Confidence 2 233445566776666665
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.89 E-value=6.7e-08 Score=71.37 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=95.6
Q ss_pred cCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHH
Q 027945 13 LEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 13 ~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~ 89 (216)
+..|-.+..+.+. .||+...+..|+..+.. ..+.-|||+|.|||-++.++.++| ...++++|.|++.+....+
T Consensus 16 ~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~p----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~ 91 (194)
T COG3963 16 FKGWIDNPRTVGAILPSSSILARKMASVIDP----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ 91 (194)
T ss_pred HHHHhcCCceeeeecCCcHHHHHHHHhccCc----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence 4455555555555 78888888888877643 478899999999999999999886 5689999999999999888
Q ss_pred HHHhcCCCeEEEEccccccc--ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 90 NAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.... +.++.+|+.... ........||.|++-.|+-.......+..++.++...+
T Consensus 92 ~~p~----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~ 147 (194)
T COG3963 92 LYPG----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP 147 (194)
T ss_pred hCCC----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC
Confidence 8653 678999998865 22222234999999999876655566667776665543
No 183
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.1e-07 Score=75.44 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=95.2
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
...+|.+|||-|+|+|.++.++++. +.++++..|......+.|.+..+..|+ ++++.+-|+-..-+.. ...++|.
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDa 180 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADA 180 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccce
Confidence 3468999999999999999999986 457999999999999999999998887 7899999988755544 3456999
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcC
Q 027945 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFN 171 (216)
Q Consensus 121 v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (216)
|+.|.| .++..++.+..+++..+ +++++-.+..+++...+ ..|.
T Consensus 181 VFLDlP----aPw~AiPha~~~lk~~g--~r~csFSPCIEQvqrtc-e~l~ 224 (314)
T KOG2915|consen 181 VFLDLP----APWEAIPHAAKILKDEG--GRLCSFSPCIEQVQRTC-EALR 224 (314)
T ss_pred EEEcCC----ChhhhhhhhHHHhhhcC--ceEEeccHHHHHHHHHH-HHHH
Confidence 999999 66666666666555443 47778888888888777 4444
No 184
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.87 E-value=2.9e-08 Score=77.99 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh--c-----C-----C-CeEEEEccccccccc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--L-----E-----L-DIDFVQCDIRNLEWR 111 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~--~-----~-----~-~~~~~~~d~~~~~~~ 111 (216)
...++.+||.+|||.|.....++++|. +|+|+|+++.+++.+.+.... . + . +++++++|++++...
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 445667999999999999999999887 999999999999998433221 1 0 1 578999999997665
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.. ++||+|+=--.|...+......+.+.+.+..+
T Consensus 113 ~~--g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~ 146 (218)
T PF05724_consen 113 DV--GKFDLIYDRTFLCALPPEMRERYAQQLASLLK 146 (218)
T ss_dssp CH--HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE
T ss_pred hc--CCceEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 41 24999997777787777777888888888765
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.87 E-value=6.5e-08 Score=74.81 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=82.7
Q ss_pred CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
..+||+|||.|.+.+.+|+. +...++|+|+....+..+...+...++ ++.++++|+.......-..+.+|.|+.+-|=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999965 667999999999999999999988888 8999999998854332122349999986653
Q ss_pred CCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 128 GTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 128 ~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
-+. +--....++..+.+.+.....+.+.++..+|.....
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~ 143 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML 143 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 222 122456888888888765555566666666665555
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.86 E-value=9.7e-09 Score=84.24 Aligned_cols=74 Identities=31% Similarity=0.475 Sum_probs=65.4
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.++++|||+|||+|.+++..|+.|+.+|+++|-+. +++.|++.+..|+. .++++++.+.+...+. .+.|+|++.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV---EKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc---cceeEEeeh
Confidence 58899999999999999999999999999999986 55999999999998 4899999999975553 249999984
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.85 E-value=1.5e-08 Score=82.49 Aligned_cols=77 Identities=29% Similarity=0.437 Sum_probs=68.5
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.+..++.|||+|||+|.++...++.|+.+|+++|-+. |.+.|+..++.|.+ ++.++.+-+++...+. . .|++|
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k---~DviI 248 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPE-K---VDVII 248 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCch-h---ccEEE
Confidence 4568899999999999999999999999999999974 99999999998877 7999999999877765 4 99999
Q ss_pred EcCC
Q 027945 123 MNPP 126 (216)
Q Consensus 123 ~npp 126 (216)
+.|.
T Consensus 249 SEPM 252 (517)
T KOG1500|consen 249 SEPM 252 (517)
T ss_pred eccc
Confidence 9865
No 188
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.84 E-value=7.2e-08 Score=78.20 Aligned_cols=116 Identities=19% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccC--CC-
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCS--VG- 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~--~~- 116 (216)
.++..++|+|||.|...+.+-+.|..+++|+||...+++.|+.+.+.... .+.++.+|.......+.- ..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 46778999999999999999998988999999999999999998886533 478999998774332211 12
Q ss_pred cccEEEEcCCCCCC--CCCCCHHHHHHHHhhcC-CcEEEEecCccHHHH
Q 027945 117 HVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTREHV 162 (216)
Q Consensus 117 ~fD~v~~npp~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 162 (216)
+||+|-|--.+|+. ........+..+.+.++ |++|+..-|.....+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii 244 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVII 244 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHH
Confidence 39999998888876 33344467777777776 677777776654444
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.83 E-value=3.5e-08 Score=82.16 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=79.6
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCeEEEEcccccccccc--c-
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNLEWRV--C- 113 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~~~~~~~~d~~~~~~~~--~- 113 (216)
++.+|||+|||-|.....+...+...++|+|++..+++.|+.+.+.. ....+++.+|........ .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999999999988889999999999999999998321 124678899987643221 1
Q ss_pred CCCcccEEEEcCCCCCC--CCCCCHHHHHHHHhhcC-CcEEEEecCccHHH
Q 027945 114 SVGHVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTREH 161 (216)
Q Consensus 114 ~~~~fD~v~~npp~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 161 (216)
...+||+|-|--.+|+. +......+++.+.+.++ |++|+.+-|.....
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 11359999998888887 33334457888888776 56666666666544
No 190
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.83 E-value=7.8e-08 Score=73.95 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=50.3
Q ss_pred CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-----cccCCCccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----RVCSVGHVD 119 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~fD 119 (216)
.++.+|||+|||+|.++..+++. +..+++++|+++.+ .. .+++++++|+.+... .....++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 57789999999999999988865 34589999999854 11 157888888876421 000122499
Q ss_pred EEEEcCC
Q 027945 120 TVVMNPP 126 (216)
Q Consensus 120 ~v~~npp 126 (216)
+|++|++
T Consensus 101 ~V~~~~~ 107 (188)
T TIGR00438 101 VVMSDAA 107 (188)
T ss_pred EEEcCCC
Confidence 9999853
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.82 E-value=6.5e-08 Score=76.40 Aligned_cols=54 Identities=30% Similarity=0.398 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHH
Q 027945 33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (216)
Q Consensus 33 ~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~ 86 (216)
....|..++..+.. .++.++||+|||+|.++..+++.|+.+|+++|+++.++..
T Consensus 59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 44555566655443 5778999999999999999999888899999999976654
No 192
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.81 E-value=5.2e-08 Score=75.08 Aligned_cols=86 Identities=29% Similarity=0.439 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhcCCC--CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 30 PHIASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~--~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
..++..|....++-+..+ ...-|||||||+|..+..+...| -..+|+|+|+.|++.|.+.-- .-.++.+|.-+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~----egdlil~DMG~ 104 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL----EGDLILCDMGE 104 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh----hcCeeeeecCC
Confidence 345566666655543333 36789999999999999998867 489999999999999987321 23567777765
Q ss_pred -ccccccCCCcccEEEE
Q 027945 108 -LEWRVCSVGHVDTVVM 123 (216)
Q Consensus 108 -~~~~~~~~~~fD~v~~ 123 (216)
+++..+. ||-+|+
T Consensus 105 GlpfrpGt---FDg~IS 118 (270)
T KOG1541|consen 105 GLPFRPGT---FDGVIS 118 (270)
T ss_pred CCCCCCCc---cceEEE
Confidence 3444444 998886
No 193
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.78 E-value=2.2e-07 Score=73.30 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
...+||||||.|.+.+.+|+. +...++|+|+....+..|...+...++ ++.+++.|+.+........+..|-|+.+-|
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 358999999999999999975 566999999999999999999999999 999999999986655433335898887655
Q ss_pred CCCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945 127 FGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK 164 (216)
Q Consensus 127 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (216)
=-+. +-=....+++.+.+.+.....+.+.++...|+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 3222 1123557888888888766677778888777776
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.74 E-value=6.3e-07 Score=77.94 Aligned_cols=84 Identities=13% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
...++.+|||+|||.|.-+..++.. +...++++|+++..++.+++|+++.|+ ++.+.+.|...+.... .+.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~--~~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL--PETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc--hhhcCeE
Confidence 3467889999999999999998865 345899999999999999999999998 7888899987653221 1239999
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++|+|....
T Consensus 188 LvDaPCSG~ 196 (470)
T PRK11933 188 LLDAPCSGE 196 (470)
T ss_pred EEcCCCCCC
Confidence 999998654
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.74 E-value=2.8e-08 Score=85.88 Aligned_cols=74 Identities=26% Similarity=0.361 Sum_probs=57.7
Q ss_pred CCEEEEecCCcchHHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945 49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
+.+|+|+|||+|.++...++.+ ..+|+++|-|+.++...+..+..++. +|+++++|..+...+. . .|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-k---vDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-K---VDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-c---eeEE
Confidence 6799999999999987777653 56999999999999888877677766 7999999999987765 4 9999
Q ss_pred EEcCC
Q 027945 122 VMNPP 126 (216)
Q Consensus 122 ~~npp 126 (216)
|+-+-
T Consensus 263 VSElL 267 (448)
T PF05185_consen 263 VSELL 267 (448)
T ss_dssp EE---
T ss_pred EEecc
Confidence 98643
No 196
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.71 E-value=1.9e-08 Score=75.57 Aligned_cols=94 Identities=24% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
...++.|+|+|+|.++...+.. +.+|+++|.||...++|.+|+..+|. +++++.+|+....+.. .|+|+|..-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~-----ADvvicEml 105 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFEN-----ADVVICEML 105 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccc-----cceeHHHHh
Confidence 3468999999999999999885 77999999999999999999988888 8999999999988854 899998432
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
=-..-.....+.+..+++.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr 126 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLR 126 (252)
T ss_pred hHHhhcccccHHHHHHHHHhh
Confidence 111112334455666665443
No 197
>PLN02823 spermine synthase
Probab=98.66 E-value=1.9e-06 Score=71.97 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
..++||.+|+|.|.....+.++ +..+++++|+|+..++.|++.+..++ -+++++.+|+..+.... .++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEE
Confidence 5579999999999999998886 46799999999999999999986542 27999999999876432 3459999
Q ss_pred EEcCCCCC--C-CCC-CCHHHHH-HHHhhcC-CcEEE
Q 027945 122 VMNPPFGT--R-KKG-VDMDFLS-MALKVAS-QAVYS 152 (216)
Q Consensus 122 ~~npp~~~--~-~~~-~~~~~l~-~~~~~~~-~~~~~ 152 (216)
++|.+-.. . ... -..++++ .+.+.+. +++++
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 99964211 0 001 1346666 5666655 44444
No 198
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=7.7e-07 Score=75.02 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~ 105 (216)
+...+.+.-.+ +.+.++.+|||++++-|.=+..+++.. ...|+++|+++..++..+.|+++.|+ ++.+++.|.
T Consensus 141 Qd~sS~l~a~~---L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 141 QDEASQLPALV---LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred cCHHHHHHHHH---cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 44444444433 345788999999999999888888753 23579999999999999999999999 678888887
Q ss_pred ccccccccCCCcccEEEEcCCCCCC---CC-----------------CCCHHHHHHHHhhc---CCcEEEEecCc
Q 027945 106 RNLEWRVCSVGHVDTVVMNPPFGTR---KK-----------------GVDMDFLSMALKVA---SQAVYSLHKTS 157 (216)
Q Consensus 106 ~~~~~~~~~~~~fD~v~~npp~~~~---~~-----------------~~~~~~l~~~~~~~---~~~~~~~~~~~ 157 (216)
..........++||.|++|+|.... +. ....+.|..+.... +..+|..|.-.
T Consensus 218 ~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 218 RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 7654433222259999999998665 00 11234555555554 34888887764
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.64 E-value=1.3e-06 Score=66.79 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=88.3
Q ss_pred hhHHHHHhccCCCCCCccccccCCCCHHHH-HHHHHHHHhhcCCC-CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCC
Q 027945 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIA-SRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATL-LGADQVIAIDID 80 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~l~~~~~~~~~~-~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~ 80 (216)
++++.+.+.+..|.+ ........+...+. .++++.+...-... .+.+++|+|+|.|.-++.++- ++..+++.+|.+
T Consensus 3 ~~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 3 EKLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp HHHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 455555555555421 11222233434444 45555554331222 223899999999999999984 466699999999
Q ss_pred HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh-cC-CcEEEEecCc
Q 027945 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV-AS-QAVYSLHKTS 157 (216)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~ 157 (216)
..-+...+.-....++ +++++++.+++ .... .+||+|++ +.-.....+-+.... .+ ++.++..+..
T Consensus 82 ~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~---~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 82 GKKVAFLKEVVRELGLSNVEVINGRAEE-PEYR---ESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp HHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTT---T-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred chHHHHHHHHHHHhCCCCEEEEEeeecc-cccC---CCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9999999999998888 69999999998 2222 23999998 333444444444443 33 4444444443
Q ss_pred c-HHHHHH
Q 027945 158 T-REHVKK 164 (216)
Q Consensus 158 ~-~~~~~~ 164 (216)
. .+.+.+
T Consensus 151 ~~~~El~~ 158 (184)
T PF02527_consen 151 DAEEELEE 158 (184)
T ss_dssp --HHHHHT
T ss_pred ChHHHHHH
Confidence 3 344433
No 200
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.61 E-value=1.4e-06 Score=68.46 Aligned_cols=133 Identities=24% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCccccccCC-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945 18 NPKVELEQYP-TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE 95 (216)
Q Consensus 18 ~~~~~~~~~~-t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~ 95 (216)
.+...+.|-. |++....+.+. +... ....+++||=+|=+. ..+++++. ..+.+|+.+|+|+..++..+..++..|
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~-~~~~-gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g 91 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAAL-MAER-GDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG 91 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHH-HHHT-T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT
T ss_pred CCccccccccccHHHHHHHHHH-HHhc-CcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC
Confidence 3445555533 44333333333 3332 567889999888332 34555553 346799999999999999999999999
Q ss_pred CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--C-cEEEEecCc
Q 027945 96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--Q-AVYSLHKTS 157 (216)
Q Consensus 96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~ 157 (216)
.+++.++.|+....+.. -.++||+++.||||-.. ...-|+.+....++ + .+|+.+...
T Consensus 92 l~i~~~~~DlR~~LP~~-~~~~fD~f~TDPPyT~~---G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 92 LPIEAVHYDLRDPLPEE-LRGKFDVFFTDPPYTPE---GLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp --EEEE---TTS---TT-TSS-BSEEEE---SSHH---HHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CceEEEEecccccCCHH-HhcCCCEEEeCCCCCHH---HHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 99999999999866554 34569999999998653 23457888877765 2 566665554
No 201
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.60 E-value=1.9e-07 Score=81.78 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=80.1
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHhc
Q 027945 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G----ADQVIAIDIDSDSLELASENAADL 94 (216)
Q Consensus 20 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~a~~~~~~~ 94 (216)
....++|.||.++...|...+.. .+..+|.|+.||+|.+.+...+. + ....+|.|+++..+..|+.|+-.+
T Consensus 162 ~k~~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 162 GKEAGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred CCCCCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 34458899998888777666532 35559999999999987777653 1 246899999999999999999988
Q ss_pred CCC--eEEEEccccccccccc--CCCcccEEEEcCCCC
Q 027945 95 ELD--IDFVQCDIRNLEWRVC--SVGHVDTVVMNPPFG 128 (216)
Q Consensus 95 ~~~--~~~~~~d~~~~~~~~~--~~~~fD~v~~npp~~ 128 (216)
|.+ +...++|...-+.... ..++||+|++||||.
T Consensus 238 gi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 238 GIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred CCCccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence 874 5677777766554421 224699999999997
No 202
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.57 E-value=2.1e-06 Score=66.08 Aligned_cols=119 Identities=23% Similarity=0.187 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHH---HcCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADL----------- 94 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~---~~~~~~v~~~D~~~~~~~~a~~~~~~~----------- 94 (216)
|-.+++++.+..+..+....+.++.|+|||+|.+.-.+. +.....|++.|+|+.+++.|++|+...
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 356899999998877656666799999999998754444 223568999999999999999987642
Q ss_pred ------------------------------C-C-CeEEEEcccccccccc--cCCCcccEEEEcCCCCCCCCCCC-----
Q 027945 95 ------------------------------E-L-DIDFVQCDIRNLEWRV--CSVGHVDTVVMNPPFGTRKKGVD----- 135 (216)
Q Consensus 95 ------------------------------~-~-~~~~~~~d~~~~~~~~--~~~~~fD~v~~npp~~~~~~~~~----- 135 (216)
| . ...+.++|+++..... ......|+|+.|.||+....+.-
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~ 191 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG 191 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence 1 1 3567888888743211 11123799999999999865544
Q ss_pred --HHHHHHHHhhcC
Q 027945 136 --MDFLSMALKVAS 147 (216)
Q Consensus 136 --~~~l~~~~~~~~ 147 (216)
..++..+...++
T Consensus 192 p~~~ml~~l~~vLp 205 (246)
T PF11599_consen 192 PVAQMLNSLAPVLP 205 (246)
T ss_dssp HHHHHHHHHHCCS-
T ss_pred cHHHHHHHHHhhCC
Confidence 234454444444
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=2.2e-06 Score=66.80 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=102.6
Q ss_pred hHHHHHhccCCCCCCccccccCCCCHHH-HHHHHHHHHhhcCCCC--CCEEEEecCCcchHHHHHH-HcCCCeEEEEeCC
Q 027945 5 QLESVLGDLEQFSNPKVELEQYPTGPHI-ASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAAT-LLGADQVIAIDID 80 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~l~~~~~~~~~~~--~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~ 80 (216)
+++.+..-+..|.+. .......++.++ ..++++.+... .... +.+++|+|+|.|.-++.+| ..+..+|+.+|..
T Consensus 23 ~l~~Y~~lL~~wN~~-~NLt~~~~~~e~~~rHilDSl~~~-~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~ 100 (215)
T COG0357 23 KLEAYVELLLKWNKA-YNLTAIRDPEELWQRHILDSLVLL-PYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL 100 (215)
T ss_pred HHHHHHHHHHHhhHh-cCCCCCCCHHHHHHHHHHHHhhhh-hcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence 344444444444222 222233444444 45555555433 3333 5899999999999999998 4455679999999
Q ss_pred HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc-C-CcEEE-EecC
Q 027945 81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-S-QAVYS-LHKT 156 (216)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~-~-~~~~~-~~~~ 156 (216)
...+...+.-....++ +++++++.++++...... ||+|.+ +.-.....+.+..... + +..++ ....
T Consensus 101 ~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~---~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~ 170 (215)
T COG0357 101 GKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQ---YDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGL 170 (215)
T ss_pred chHHHHHHHHHHHhCCCCeEEehhhHhhccccccc---CcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHH
Confidence 9999999999998888 699999999988765423 999998 3334444444444332 2 12221 2223
Q ss_pred ccHHHHHHHHhhhcCCccceEEEEEeecCCc
Q 027945 157 STREHVKKAALRDFNASSAEVLCELRYDVPQ 187 (216)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 187 (216)
...+++.+.- +.....++.......+..|.
T Consensus 171 ~~~~e~~e~~-~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 171 AGKDELPEAE-KAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred hhhhhHHHHH-HHHHhhcCcEEEEEEeecCC
Confidence 3344443333 43443444555544455554
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=3.7e-06 Score=67.38 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
.++++||-+|.|.|.....+.++. ..+++++|+|+..++.|++.+.... -+++++.+|...+.... .+.+||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccE
Confidence 367899999999999999999875 6799999999999999999876531 27999999999877654 2126999
Q ss_pred EEEcCCCCCCC--CCCCHHHHHHHHhhcC-CcEEE
Q 027945 121 VVMNPPFGTRK--KGVDMDFLSMALKVAS-QAVYS 152 (216)
Q Consensus 121 v~~npp~~~~~--~~~~~~~l~~~~~~~~-~~~~~ 152 (216)
|+.|.+-.... .--..++++.+.+.+. +++++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 99987742111 1124678888888776 44444
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.53 E-value=2.9e-06 Score=69.05 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC----C-CeEEEEcccccccccccCCCcccEEE
Q 027945 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE----L-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.++||-+|-|.|..+.++.++. ..+++.+|+|+..++.+++.+.... . +++++.+|..++...... +||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCCEEE
Confidence 3699999999999999999985 7899999999999999999988765 2 789999999998776422 699999
Q ss_pred EcCCCC-CCCCCC-CHHHHHHHHhhcC-CcEEEEe
Q 027945 123 MNPPFG-TRKKGV-DMDFLSMALKVAS-QAVYSLH 154 (216)
Q Consensus 123 ~npp~~-~~~~~~-~~~~l~~~~~~~~-~~~~~~~ 154 (216)
+|..=. .+.+.. ..+|++.+.+.++ +++++.-
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 864322 111222 4578888887776 4555443
No 206
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.45 E-value=6.3e-06 Score=67.45 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~ 106 (216)
+...+.+....+ .+.++.+|||++++.|.-+..++.. +.+.+++.|+++..++..+.|+++.|. ++.+...|..
T Consensus 70 Qd~sS~l~~~~L---~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~ 146 (283)
T PF01189_consen 70 QDESSQLVALAL---DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR 146 (283)
T ss_dssp HHHHHHHHHHHH---TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred cccccccccccc---cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence 344444444333 4568889999999999998888864 367999999999999999999999998 7788888888
Q ss_pred cccccccCCCcccEEEEcCCCCCC
Q 027945 107 NLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 107 ~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
...... ....||.|+.|+|-...
T Consensus 147 ~~~~~~-~~~~fd~VlvDaPCSg~ 169 (283)
T PF01189_consen 147 KLDPKK-PESKFDRVLVDAPCSGL 169 (283)
T ss_dssp HHHHHH-HTTTEEEEEEECSCCCG
T ss_pred cccccc-cccccchhhcCCCccch
Confidence 763322 11139999999998665
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=2.8e-06 Score=66.60 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=43.6
Q ss_pred CCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL 94 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (216)
...+.-+||+||-+|.+++.+++. ++..+.|+|||+..++.|+++++..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 346778999999999999999975 7889999999999999999998753
No 208
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=7.6e-06 Score=63.72 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc---cCCCccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV---CSVGHVD 119 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~~~~fD 119 (216)
..++++||+|.=||.-++.+|.. ..++|+++|+|+..++.+....+..|+ +++++++++.+..... ...+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 36789999999999888887764 256999999999999999999999998 7999999998855432 2345699
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945 120 TVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK 155 (216)
Q Consensus 120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 155 (216)
++|.|- .+..+...+.++++..+ |.+.+..+
T Consensus 152 faFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEEcc-----chHHHHHHHHHHHhhcccccEEEEec
Confidence 999974 25566678888888876 55555544
No 209
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.43 E-value=9.4e-08 Score=74.14 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=54.2
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
=+++||+|||||..+..+..+ ..+.+|+|+|..|++.|.+.- ..-...++|+..+.... ...+||+|++--.+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~-~~er~DLi~AaDVl 198 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDL-TQERFDLIVAADVL 198 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhc-cCCcccchhhhhHH
Confidence 469999999999999999876 458999999999999997762 22355667766554322 33359999974443
No 210
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.3e-06 Score=68.38 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
..+|+|.-||||.-++..+.. +..+|+.-|+||.+++.++.|+..| +.+...++.|+..+..... ..||+|=.||-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCCC
Confidence 789999999999999999965 4449999999999999999999999 4477777799888766532 24999999965
Q ss_pred CCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945 127 FGTRKKGVDMDFLSMALKVAS-QAVYSLH 154 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 154 (216)
+...+|++.+++..+ +++..+.
T Consensus 131 ------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 131 ------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ------CCCchHHHHHHHHhhcCCEEEEE
Confidence 667899999998876 3444333
No 211
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.38 E-value=1.1e-06 Score=68.23 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=74.4
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
..+.||.|||.|.++-.+...-+.+|..+|.++..++.|++.+..... -.++++..+.++.+.... ||+|.+.-..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~---YDlIW~QW~l 132 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGK---YDLIWIQWCL 132 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT----EEEEEEES-G
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCc---EeEEEehHhh
Confidence 469999999999999888764577999999999999999988766333 357889999988776434 9999999998
Q ss_pred CCCCCCCCHHHHHHHHhhcCCcEEEE
Q 027945 128 GTRKKGVDMDFLSMALKVASQAVYSL 153 (216)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (216)
.+..+...+.+++++...+.+..+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~Iv 158 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIV 158 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEE
Confidence 88888888999999998876434443
No 212
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=7.4e-06 Score=63.78 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=72.0
Q ss_pred CCCEEEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEEcccccccccc--cCCCcccEE
Q 027945 48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNLEWRV--CSVGHVDTV 121 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d~~~~~~~~--~~~~~fD~v 121 (216)
++.++||+|.|.--+-=.+. +....+.+|.|+|+.+++.|+.++..| ++ .+++....-....+.. +..+.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 44589999988664432222 223448999999999999999999988 55 4666533322222221 223459999
Q ss_pred EEcCCCCCC---------CCCCCH------HHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 122 VMNPPFGTR---------KKGVDM------DFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 122 ~~npp~~~~---------~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
+||||||.. ++.... ......++.++..-.+.|..+...++...+
T Consensus 158 lCNPPFh~s~~da~~gsqrk~~nl~g~l~~~~~~~~lnfggq~qelwCegGe~afi~~mv 217 (292)
T COG3129 158 LCNPPFHDSAADARAGSQRKRRNLGGELGPTNKLDALNFGGQQQELWCEGGEVAFIKKMV 217 (292)
T ss_pred ecCCCcchhHHHHHhcccCCcccccccccccccchhhhccCCceEEEecCcchhhHHHHH
Confidence 999999986 111111 112233444444556667666555554444
No 213
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.34 E-value=4.4e-06 Score=68.59 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc
Q 027945 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC 113 (216)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (216)
-|+..++..+...++..++|.-+|.|.-+..+++. +.++|+|+|.|+.+++.++++++..+-++.++++++.++.....
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 34555555555567789999999999999999975 44799999999999999999988765579999999988653321
Q ss_pred --CCCcccEEEEcCCCCC
Q 027945 114 --SVGHVDTVVMNPPFGT 129 (216)
Q Consensus 114 --~~~~fD~v~~npp~~~ 129 (216)
...++|.|++|.-...
T Consensus 87 ~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 87 ELLVTKIDGILVDLGVSS 104 (305)
T ss_pred hcCCCcccEEEEeccCCH
Confidence 1124999999766543
No 214
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.33 E-value=2.3e-06 Score=67.35 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=53.1
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc----CC------CeEEEEcccccccccccCCCccc
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL----EL------DIDFVQCDIRNLEWRVCSVGHVD 119 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~----~~------~~~~~~~d~~~~~~~~~~~~~fD 119 (216)
.+|||.-+|-|..++.++..|+ +|+++|-||......+.-++.. .. +++++++|..++... ....||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~--~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ--PDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC--HSS--S
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh--cCCCCC
Confidence 3899999999999999998777 8999999998776655433321 11 689999999997652 122499
Q ss_pred EEEEcCCCCCCCCCCC----HHHHHHHH
Q 027945 120 TVVMNPPFGTRKKGVD----MDFLSMAL 143 (216)
Q Consensus 120 ~v~~npp~~~~~~~~~----~~~l~~~~ 143 (216)
+|++||.|....+... ++.++.+.
T Consensus 154 VVY~DPMFp~~~ksa~vkk~m~~lr~L~ 181 (234)
T PF04445_consen 154 VVYFDPMFPERKKSALVKKEMRVLRDLA 181 (234)
T ss_dssp EEEE--S-----TTTT-SHHHHHHHHHH
T ss_pred EEEECCCCCCcccccccccchHHHHHhh
Confidence 9999999988754442 34455443
No 215
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.33 E-value=1.9e-05 Score=69.67 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=85.9
Q ss_pred CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.....+||+|||.|.+.+.+|.. +...++|+|+....+..+...+...++ ++.++..|+..+.... ..+++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-PNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-CcccccEEEEE
Confidence 45679999999999999999975 566999999999999888888877777 7888888875332111 22239999987
Q ss_pred CCCCCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945 125 PPFGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 125 pp~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
-|=-+. +--....+++.+.+.+.+...+.+.++..+|.....
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 664333 122345788888887775555556777777766655
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.32 E-value=1e-05 Score=62.98 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=61.6
Q ss_pred hhcCCCCCCEEEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHh-------cCC---CeEEEEcccccccc
Q 027945 42 NSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD-------LEL---DIDFVQCDIRNLEW 110 (216)
Q Consensus 42 ~~~~~~~~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~---~~~~~~~d~~~~~~ 110 (216)
......++.+.+|+|||.|...+.++ ..++.+++|+|+.+...+.|+...+. .|. ++++.++|+.+...
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 33345577899999999999877777 45787899999999988877654432 333 57889999887543
Q ss_pred cc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945 111 RV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT 156 (216)
Q Consensus 111 ~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 156 (216)
.. .. .|+|++|--... ......+.+.+...+ +...++..+
T Consensus 116 ~~~~~s~---AdvVf~Nn~~F~---~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 116 VKDIWSD---ADVVFVNNTCFD---PDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHGHC----SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred HhhhhcC---CCEEEEeccccC---HHHHHHHHHHHhcCCCCCEEEECCC
Confidence 21 13 799999754221 122334444454444 444454444
No 217
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.27 E-value=3.8e-06 Score=61.39 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=49.0
Q ss_pred EEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945 51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 107 (216)
+++|+|||.|..+..+++.+. .+++++|.++.+++.++.+++.++. ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998754 4899999999999999999998876 67777776654
No 218
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.27 E-value=7e-06 Score=67.96 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHhhcC--------CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Q 027945 28 TGPHIASRMLYTAENSFG--------DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDID 99 (216)
Q Consensus 28 t~~~~~~~~l~~~~~~~~--------~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~ 99 (216)
.+++-+...|..+...+. ..++.++||+||++|..+..+.++|. +|+++|..+ +. ..+...+ +++
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~~-~V~ 255 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDTG-QVE 255 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCCC-CEE
Confidence 345566667777755543 24788999999999999999999887 999999655 22 1122212 689
Q ss_pred EEEcccccccccccCCCcccEEEEcCC
Q 027945 100 FVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 100 ~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.+..|...+.+... ++|+++||..
T Consensus 256 h~~~d~fr~~p~~~---~vDwvVcDmv 279 (357)
T PRK11760 256 HLRADGFKFRPPRK---NVDWLVCDMV 279 (357)
T ss_pred EEeccCcccCCCCC---CCCEEEEecc
Confidence 99999887765332 4999999866
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=98.27 E-value=2.9e-05 Score=62.58 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccc
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIR 106 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~ 106 (216)
+--++|...... ..+..++||-+|.|.|....++.++.. +|+.+|+|+..++.+++.+..... +++++..
T Consensus 57 iYHEmLvHppl~-~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--- 131 (262)
T PRK00536 57 IESELLAHMGGC-TKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--- 131 (262)
T ss_pred hHHHHHHHHHHh-hCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---
Confidence 344444443322 235668999999999999999999864 999999999999999996654321 6777651
Q ss_pred cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL 153 (216)
Q Consensus 107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 153 (216)
.... ..++||+||.|..|. ..+.+.+.+.++ +++++.
T Consensus 132 -~~~~--~~~~fDVIIvDs~~~-------~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 132 -LLDL--DIKKYDLIICLQEPD-------IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred -hhhc--cCCcCCEEEEcCCCC-------hHHHHHHHHhcCCCcEEEE
Confidence 1111 113499999995432 456666666665 445544
No 220
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.2e-05 Score=61.78 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHHHhcC--------C--
Q 027945 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLE--------L-- 96 (216)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~--~~~v~~~D~~~~~~~~a~~~~~~~~--------~-- 96 (216)
+.+-+.++..+... ..++.+.||+|+|||.++.-+++. + ...++|+|.-++.++.+++|+...- +
T Consensus 66 p~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 56666666666543 348889999999999999888854 2 3355999999999999999998653 1
Q ss_pred -CeEEEEcccccccccccCCCcccEEEEc
Q 027945 97 -DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 97 -~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
+..++.+|.......... ||.|.+-
T Consensus 144 ~~l~ivvGDgr~g~~e~a~---YDaIhvG 169 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAP---YDAIHVG 169 (237)
T ss_pred CceEEEeCCccccCCccCC---cceEEEc
Confidence 578899999887666555 9999985
No 221
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.25 E-value=3.9e-05 Score=59.73 Aligned_cols=100 Identities=28% Similarity=0.294 Sum_probs=66.0
Q ss_pred EEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945 52 VADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 52 vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~ 128 (216)
|+|+||.-|.+++.+.+.+ +.+++++|+++..++.|+.+++..++ ++++..+|-++....... .|.|+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~---~d~ivIA---- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGED---VDTIVIA---- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG------EEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCC---CCEEEEe----
Confidence 6899999999999999887 56899999999999999999999987 799999998775544323 6777641
Q ss_pred CCCCCCCHHHHHHHHhhcC----C-cEEEEecCccHHHH
Q 027945 129 TRKKGVDMDFLSMALKVAS----Q-AVYSLHKTSTREHV 162 (216)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~~ 162 (216)
++--..+.+++.... . .-++++.......+
T Consensus 74 ----GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~L 108 (205)
T PF04816_consen 74 ----GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYEL 108 (205)
T ss_dssp ----EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHH
T ss_pred ----cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHH
Confidence 333445555554432 2 23555554444333
No 222
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.24 E-value=8.9e-06 Score=69.01 Aligned_cols=92 Identities=26% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.+.++||.-+|||.-++.++.. +..+|++.|+|+.+++.++.|++.|++ .+++.+.|+..+... ....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~--~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS--RQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH--STT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh--ccccCCEEE
Confidence 3459999999999999999965 567999999999999999999999998 378889999886631 222499999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.||- +...+|+..+++..+
T Consensus 127 lDPf------GSp~pfldsA~~~v~ 145 (377)
T PF02005_consen 127 LDPF------GSPAPFLDSALQAVK 145 (377)
T ss_dssp E--S------S--HHHHHHHHHHEE
T ss_pred eCCC------CCccHhHHHHHHHhh
Confidence 9975 777899999999876
No 223
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.20 E-value=2.5e-05 Score=63.69 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=83.8
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEE
Q 027945 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFV 101 (216)
Q Consensus 25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~ 101 (216)
.+|........+|.++....+...+.+|||+|||.|....++... ...+++++|.|+.+++.++..++.... .....
T Consensus 10 r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~ 89 (274)
T PF09243_consen 10 RMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW 89 (274)
T ss_pred HhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh
Confidence 345555667778888877666677889999999999877666643 356899999999999999998765422 11111
Q ss_pred EcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945 102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR 159 (216)
Q Consensus 102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 159 (216)
..+.......... .|+|++.-.............++.+-+...+ ..+++-+++.
T Consensus 90 ~~~~~~~~~~~~~---~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~ 143 (274)
T PF09243_consen 90 RRVLYRDFLPFPP---DDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTP 143 (274)
T ss_pred hhhhhcccccCCC---CcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence 1111111111112 5999987666666554445566666555544 5556666653
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.20 E-value=1.5e-06 Score=68.05 Aligned_cols=91 Identities=19% Similarity=0.133 Sum_probs=62.9
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
+.++|+|||+|..++-++.+ ..+|+|+|+++.+++.|++.....-. .......+..++.....+ .|+|++---+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~S---VDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEES---VDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcc---eeeehhhhhH
Confidence 38999999999878888886 56999999999999999887544322 223333333333333334 9999986666
Q ss_pred CCCCCCCCHHHHHHHHhhcC
Q 027945 128 GTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~ 147 (216)
|.. ...++.+.+.+.++
T Consensus 111 HWF---dle~fy~~~~rvLR 127 (261)
T KOG3010|consen 111 HWF---DLERFYKEAYRVLR 127 (261)
T ss_pred Hhh---chHHHHHHHHHHcC
Confidence 655 34466677766665
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.18 E-value=2.1e-05 Score=60.86 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=53.2
Q ss_pred CCCEEEEecCCcch----HHHHHHH--c---C-CCeEEEEeCCHHHHHHHHHHH--------------Hh-----cC-C-
Q 027945 48 SNKVVADFGCGCGT----LGAAATL--L---G-ADQVIAIDIDSDSLELASENA--------------AD-----LE-L- 96 (216)
Q Consensus 48 ~~~~vLD~g~G~G~----~~~~l~~--~---~-~~~v~~~D~~~~~~~~a~~~~--------------~~-----~~-~- 96 (216)
+.-+|+..||++|- +++.+.. . + .-+++|+|+|+.+++.|+.-. +. .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999994 3333333 1 1 238999999999999987611 00 11 1
Q ss_pred --------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 97 --------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 97 --------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.++|.+.|+.+.....+ +||+|+|--.+.+.+.......++.+...+.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~---~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~ 166 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFG---RFDLIFCRNVLIYFDPETQQRVLRRLHRSLK 166 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE
T ss_pred eEChHHcCceEEEecccCCCCcccC---CccEEEecCEEEEeCHHHHHHHHHHHHHHcC
Confidence 58999999988322222 4999999666555544444444444444443
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.18 E-value=2.2e-05 Score=57.48 Aligned_cols=74 Identities=27% Similarity=0.286 Sum_probs=55.1
Q ss_pred CCCCCEEEEecCCcchHHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccccCCC
Q 027945 46 DVSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRVCSVG 116 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~ 116 (216)
..+..+|+|+|||.|.++..++. ....+|+++|.++..++.+..+.+..+. +..+..++........ .
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 99 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSD-P-- 99 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccC-C--
Confidence 35667999999999999999998 5556999999999999999998887662 3555555554432222 2
Q ss_pred cccEEEE
Q 027945 117 HVDTVVM 123 (216)
Q Consensus 117 ~fD~v~~ 123 (216)
.++++.
T Consensus 100 -~~~~vg 105 (141)
T PF13679_consen 100 -PDILVG 105 (141)
T ss_pred -CeEEEE
Confidence 566664
No 227
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=9.2e-06 Score=63.68 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=70.4
Q ss_pred CEEEEecCCcchHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945 50 KVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP 125 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np 125 (216)
.+||++|||.|.....+.+.. .-.|+++|.+|.+++..+.+......++.....|+....... ...+.+|.|++--
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 389999999999999998752 248999999999999999998776555655566655433111 1334599887754
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCcEEEEecC
Q 027945 126 PFGTRKKGVDMDFLSMALKVASQAVYSLHKT 156 (216)
Q Consensus 126 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (216)
.+....++.-...++.+.+..+++..+++..
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 5444444444445555555544333444443
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.13 E-value=4.4e-05 Score=63.36 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH--h-c-CC----CeEEEEcccccccccccCCCcc
Q 027945 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--D-L-EL----DIDFVQCDIRNLEWRVCSVGHV 118 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~--~-~-~~----~~~~~~~d~~~~~~~~~~~~~f 118 (216)
.-.++|-+|.|.|.-..++.+.+ ..+++-+|+||.+++.++++.- . | |. ++.++..|++.+....+ .+|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--DMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--ccc
Confidence 34699999999999999999986 7899999999999999995442 2 1 11 68999999998876542 269
Q ss_pred cEEEEcCC
Q 027945 119 DTVVMNPP 126 (216)
Q Consensus 119 D~v~~npp 126 (216)
|.||.|.|
T Consensus 367 D~vIVDl~ 374 (508)
T COG4262 367 DVVIVDLP 374 (508)
T ss_pred cEEEEeCC
Confidence 99999887
No 229
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=98.11 E-value=0.00011 Score=58.54 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccCCCc-ccE
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCSVGH-VDT 120 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~-fD~ 120 (216)
...||++|+|+|..++.++....++|...|.. ..++..+.|...++. .+.+...++...+........ ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 45799999999999999998766799999984 455555555433322 455666666654443323334 899
Q ss_pred EE-EcCCCCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 027945 121 VV-MNPPFGTRKKGVDMDFLSMALKVASQAVYSL 153 (216)
Q Consensus 121 v~-~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (216)
|+ +|+.|...........+...+...+ .+++.
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~-~i~l~ 198 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDG-TIFLA 198 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCC-eEEEE
Confidence 99 5777776655555555555554444 44443
No 230
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.09 E-value=4.7e-05 Score=60.75 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945 43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.+...+..+|+|+|+|+|.++..+++. +..+++..|+ |..++.++. ..+++++.+|+++ +.+ . +|++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~-~~P--~---~D~~ 162 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD-PLP--V---ADVY 162 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT-CCS--S---ESEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHh-hhc--c---ccce
Confidence 333445579999999999999999965 5669999999 889988888 2279999999983 333 3 8999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
++.-.+|.-.+......|+++....+
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALK 188 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhC
Confidence 98777766655666677777777654
No 231
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.04 E-value=1.4e-05 Score=65.09 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
+++|++||.|.++.-+.+.|...+.++|+++.+++..+.|... .++++|+.+..... ....+|++++.||....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~-~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKD-FIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhh-cCCCCCEEEeCCCChhh
Confidence 6899999999999999988887899999999999999998753 25677777765432 01249999999998654
No 232
>PHA01634 hypothetical protein
Probab=98.03 E-value=3.4e-05 Score=54.60 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
...+++|+|+|++.|.-++..+.+|+.+|+++|.++...+..+.+++.+.+ .--....++. . ..+.||+.+.|
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~---~---~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWN---G---EYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccccc---c---cCCCcceEEEE
Confidence 458899999999999999999998999999999999999999999988754 2122222222 1 23459999987
Q ss_pred CC
Q 027945 125 PP 126 (216)
Q Consensus 125 pp 126 (216)
.-
T Consensus 100 Ce 101 (156)
T PHA01634 100 CE 101 (156)
T ss_pred cc
Confidence 53
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3.6e-05 Score=60.37 Aligned_cols=92 Identities=24% Similarity=0.292 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcC-CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe-EEEEccccccccc
Q 027945 34 SRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWR 111 (216)
Q Consensus 34 ~~~l~~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~ 111 (216)
...|..++..+. ..+++++||+|+.||.++..+.++|+.+|+++|....-+..- ++. +.++ .....|+..+...
T Consensus 64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~-d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN-DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc-CCcEEEEecCChhhCCHH
Confidence 445555555555 468899999999999999999999999999999864332221 111 1133 4446666665554
Q ss_pred ccCCCcccEEEEcCCCCCC
Q 027945 112 VCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 112 ~~~~~~fD~v~~npp~~~~ 130 (216)
+ -.+..|++++|-.|...
T Consensus 140 ~-~~~~~d~~v~DvSFISL 157 (245)
T COG1189 140 D-FTEKPDLIVIDVSFISL 157 (245)
T ss_pred H-cccCCCeEEEEeehhhH
Confidence 4 32358999999988754
No 234
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.99 E-value=2.4e-05 Score=62.27 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
...++||+|+|.|.++..++.. ..+|+++|.|+.|....+++ | .+++ |..+..... .+||+|.|--..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~vl--~~~~w~~~~---~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FTVL--DIDDWQQTD---FKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--CeEE--ehhhhhccC---CceEEEeehhhh
Confidence 4568999999999999999985 55899999999886665554 2 4433 222222222 249999983332
Q ss_pred CCCCCCCCHHHHHHHHhh
Q 027945 128 GTRKKGVDMDFLSMALKV 145 (216)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~ 145 (216)
. +.......++++.+.
T Consensus 162 D--Rc~~P~~LL~~i~~~ 177 (265)
T PF05219_consen 162 D--RCDRPLTLLRDIRRA 177 (265)
T ss_pred h--ccCCHHHHHHHHHHH
Confidence 2 222333445544443
No 235
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.88 E-value=0.00025 Score=59.97 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=69.9
Q ss_pred cCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccE
Q 027945 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 44 ~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
+.+.++.+|||++|-.|.=+..+|.. +.+.+++.|.+...++..+.|+.+.|+ +..+++.|..+++... .-++||.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCcccce
Confidence 34668899999999999987777753 566899999999999999999999999 6778888988765332 1124999
Q ss_pred EEEcCCCCC
Q 027945 121 VVMNPPFGT 129 (216)
Q Consensus 121 v~~npp~~~ 129 (216)
|+.|-|...
T Consensus 316 VLLDAPCSG 324 (460)
T KOG1122|consen 316 VLLDAPCSG 324 (460)
T ss_pred eeecCCCCC
Confidence 999999876
No 236
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.84 E-value=0.00016 Score=55.91 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=74.0
Q ss_pred CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-Ce-EEEEccccccccccc-----CCCcccEE
Q 027945 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNLEWRVC-----SVGHVDTV 121 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~-----~~~~fD~v 121 (216)
.+|||+|||||--+..++++ +...-...|+++......+..+...+. ++ ..+..|+........ ....||.|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 36999999999999999975 444677899999888888888877766 33 456777766544332 12359999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT 156 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 156 (216)
++--..|-.........++.+.+.++ +++.++..|
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 98666666555555566666666655 455555444
No 237
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=5.7e-05 Score=58.94 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=65.2
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~ 127 (216)
.-..++|+|||.|.+...+...+..+++.+|.+..|++.++.. +.+++......+|=+.+++...+ +|+|++....
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens---~DLiisSlsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENS---VDLIISSLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccccccc---hhhhhhhhhh
Confidence 3458999999999999999988999999999999999998775 33555667778887777776656 9999998777
Q ss_pred CCC
Q 027945 128 GTR 130 (216)
Q Consensus 128 ~~~ 130 (216)
|+.
T Consensus 148 HW~ 150 (325)
T KOG2940|consen 148 HWT 150 (325)
T ss_pred hhh
Confidence 765
No 238
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.78 E-value=5.9e-05 Score=61.98 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-
Q 027945 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV- 112 (216)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~- 112 (216)
-|+.+++..+...++...+|.--|.|+-+..+.+. +.++++|+|.|+.+++.|++++.....++.++++++.++....
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHH
Confidence 35555556556678889999999999999999965 4579999999999999999998876668999999998865332
Q ss_pred -c-CCCcccEEEEcCCCC
Q 027945 113 -C-SVGHVDTVVMNPPFG 128 (216)
Q Consensus 113 -~-~~~~fD~v~~npp~~ 128 (216)
. ...++|.|++|.-..
T Consensus 87 ~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 87 ELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HTTTTS-EEEEEEE-S--
T ss_pred HccCCCccCEEEEccccC
Confidence 1 223599999976543
No 239
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.76 E-value=0.001 Score=53.89 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=77.0
Q ss_pred HHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHhcCC-C-eEEEEcccccc
Q 027945 35 RMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNL 108 (216)
Q Consensus 35 ~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~-~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~ 108 (216)
.++...+..+.. -...+|||+.||.|...+.... .+ ...+...|.++..++..+..++..|+ + ++|.++|+++.
T Consensus 121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 334444443322 3456999999999998777664 33 36999999999999999999999999 4 49999999985
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCCHH-HHHHHHhhc
Q 027945 109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMD-FLSMALKVA 146 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~-~l~~~~~~~ 146 (216)
..-..-.-+.++++..--|....+...+. .+.-+....
T Consensus 201 ~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al 239 (311)
T PF12147_consen 201 DSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARAL 239 (311)
T ss_pred hHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHh
Confidence 32211111379999887877765544332 344444443
No 240
>PRK11524 putative methyltransferase; Provisional
Probab=97.75 E-value=0.00014 Score=59.55 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 027945 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (216)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (216)
..++..++.. ...++..|||++||||..++++.+.+. +.+|+|++++.++.|+.++..
T Consensus 195 ~~L~erlI~~-~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILA-SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 4455555443 345788999999999999999999766 999999999999999999864
No 241
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=0.0006 Score=55.16 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCCEEEEecCCcch----HHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHh-----c----------------C-
Q 027945 48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD-----L----------------E- 95 (216)
Q Consensus 48 ~~~~vLD~g~G~G~----~~~~l~~~~------~~~v~~~D~~~~~~~~a~~~~~~-----~----------------~- 95 (216)
..-+|+-.||+||- +++.+.+.. .-+++|+|+|..+++.|+.-.-. . +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 45699999999993 344444432 24899999999999998752111 0 1
Q ss_pred C--------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHh
Q 027945 96 L--------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAAL 167 (216)
Q Consensus 96 ~--------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (216)
. .|.|...|+..-.+..+. ||+|+|= .|.+.....+...+...+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~---fD~IfCR------------------------NVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGK---FDLIFCR------------------------NVLIYFDEETQERILRRFA 228 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCC---CCEEEEc------------------------ceEEeeCHHHHHHHHHHHH
Confidence 0 467777887765532223 9999994 3444455555556666665
Q ss_pred hhcCCccceEEEEEeecCC
Q 027945 168 RDFNASSAEVLCELRYDVP 186 (216)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~ 186 (216)
..|+ ++|.++.-+...++
T Consensus 229 ~~L~-~gG~LflG~sE~~~ 246 (268)
T COG1352 229 DSLK-PGGLLFLGHSETIP 246 (268)
T ss_pred HHhC-CCCEEEEccCcccC
Confidence 5555 66666655554443
No 242
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.69 E-value=0.00021 Score=58.43 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=58.3
Q ss_pred CCEEEEecCCcch----HHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC-
Q 027945 49 NKVVADFGCGCGT----LGAAATLL-G----ADQVIAIDIDSDSLELASENAAD-----------------------LE- 95 (216)
Q Consensus 49 ~~~vLD~g~G~G~----~~~~l~~~-~----~~~v~~~D~~~~~~~~a~~~~~~-----------------------~~- 95 (216)
.-+|+..||+||- +++.+... + .-+++|+|+|+.+++.|+.-.-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 33333332 1 23799999999999999874200 01
Q ss_pred ------C--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945 96 ------L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV 145 (216)
Q Consensus 96 ------~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~ 145 (216)
+ .++|.+.|+.+.+... .++||+|+|--.+.+.........++.+...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPL 251 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHH
Confidence 1 4788899988744321 1249999995454444333333444444433
No 243
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.69 E-value=7.5e-05 Score=56.92 Aligned_cols=86 Identities=26% Similarity=0.275 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcC-CC--CCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 33 ASRMLYTAENSFG-DV--SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 33 ~~~~l~~~~~~~~-~~--~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
+...|.++...+. .. ++.++||+||+.|+++..+.+++ ..+|+|+|+.+. .. -..+..+++|..+
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-~~~~~~i~~d~~~ 74 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-LQNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-ccceeeeecccch
Confidence 3456677777666 22 44799999999999999999886 579999999875 10 0135555666544
Q ss_pred cccc------c-cCCCcccEEEEcCCCC
Q 027945 108 LEWR------V-CSVGHVDTVVMNPPFG 128 (216)
Q Consensus 108 ~~~~------~-~~~~~fD~v~~npp~~ 128 (216)
.... . ...+++|+|++|....
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred hhHHHhhhhhccccccCcceeccccccC
Confidence 2110 0 0113599999998433
No 244
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.64 E-value=6.9e-05 Score=60.59 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCEEEEecCCcchHHH-HHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945 48 SNKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~-~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.+..|+|+++|.|.+++ .+...|+..|+++|.+|.+++..+++++.|++ ...++.+|....-+.. . .|.|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~-~---AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRL-R---ADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccc-c---chheeec
Confidence 44799999999999999 67777899999999999999999999999987 5677788877654444 4 7887752
Q ss_pred -CCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945 125 -PPFGTRKKGVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 125 -pp~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (216)
.| ....-....-++++..++.+.
T Consensus 270 LlP----Sse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 270 LLP----SSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred ccc----ccccchHHHHHHhhhcCCcEE
Confidence 22 222333344445555444333
No 245
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.61 E-value=0.0002 Score=56.15 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~ 89 (216)
|..+...++... ..++..|||++||+|..++++.+.+. +.+|+|+++..++.|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 455555555443 34688999999999999999999766 89999999999999864
No 246
>PRK13699 putative methylase; Provisional
Probab=97.60 E-value=0.00034 Score=55.40 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (216)
.++..|||++||+|..+++..+.+. +.+|+|++++..+.+.++++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4778999999999999999998766 8999999999999999888753
No 247
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.60 E-value=0.0003 Score=52.62 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=51.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC----CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 75 IAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 75 ~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
+|+|+|+.|++.|+++.+..+ .+++++++|+.+++..+++ ||+|++.-.++.. ......++++.+.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~---fD~v~~~~~l~~~--~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCE---FDAVTMGYGLRNV--VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCC---eeEEEecchhhcC--CCHHHHHHHHHHHcC
Confidence 489999999999987765322 1689999999998876655 9999997555443 344567788877765
No 248
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00018 Score=52.32 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV 112 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~ 112 (216)
...+..+.+|+|+|.|.+.+..++.|....+|+|++|-.+..++-.+-+.|+ ...|..-|+......+
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 3344468999999999999999999877999999999999999988877777 5778888887776665
No 249
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00078 Score=54.82 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (216)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (216)
.+-++.+.+..+...++...+|.--|.|.-+..+.... .++++|+|.|+.+++.|+..+...+-++.++++++.++..
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE 87 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH
Confidence 34567777777777788999999999999999988753 4689999999999999999998877789999999877654
Q ss_pred ccc--CCCcccEEEEcCC
Q 027945 111 RVC--SVGHVDTVVMNPP 126 (216)
Q Consensus 111 ~~~--~~~~fD~v~~npp 126 (216)
... ..+++|-|++|.-
T Consensus 88 ~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 88 ALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHhcCCCceeEEEEecc
Confidence 321 2245888887653
No 250
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.56 E-value=0.00017 Score=59.87 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=56.2
Q ss_pred EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
+++|++||.|.+++-+.+.|...+.++|+++.+.+.-+.|.. ....+|+.+.....-.. .+|+++.-||....
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccccc-cceEEEeccCCceE
Confidence 799999999999999999887789999999999999999974 77889998876432110 29999999997554
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.52 E-value=0.0016 Score=50.71 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=62.2
Q ss_pred CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.+.++.|+||--|.+..++.+.+ +..+++.|+++..++.|..+...+++ ++++..+|.+........ +|+|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~---~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE---IDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC---cCEEEE
Confidence 45569999999999999999864 77999999999999999999999988 789999998765544434 898885
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=5.6e-05 Score=55.82 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeE
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL----DID 99 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~-G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~ 99 (216)
||+.+.++..+|...... .+.+||++|.|- |..++.+|. .+...|..+|-+..+++..++..-.|.. ++.
T Consensus 11 wpseeala~~~l~~~n~~----rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNKI----RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred cccHHHHHHHHHhchhHH----hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence 777777777777665433 678999999994 445666663 3567999999999999998887766532 333
Q ss_pred EEEcccccccccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945 100 FVQCDIRNLEWRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 100 ~~~~d~~~~~~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (216)
++..+........ .-.+||.|++ |.-|...-.......++..+++.+..++
T Consensus 87 vlrw~~~~aqsq~-eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 87 VLRWLIWGAQSQQ-EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred hhHHHHhhhHHHH-hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 3333332222111 1124999994 7776654333444556666665554333
No 253
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.51 E-value=0.0016 Score=52.70 Aligned_cols=122 Identities=17% Similarity=0.078 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcC----CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh----c---------
Q 027945 32 IASRMLYTAENSFG----DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD----L--------- 94 (216)
Q Consensus 32 ~~~~~l~~~~~~~~----~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~----~--------- 94 (216)
.-..++..+...++ .....+||-+|||.|+++..+|.+|. .+.|.|.|-.|+-...-.+.. +
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 44455555554433 23456999999999999999999888 899999999887554443221 0
Q ss_pred ----------------------------CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945 95 ----------------------------ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146 (216)
Q Consensus 95 ----------------------------~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~ 146 (216)
..+.....+|+.+.-......++||.|+.. |.-.........++.+.+.+
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHh
Confidence 003455666766654443223469998875 44334444455566555554
Q ss_pred C-CcEEEEecC
Q 027945 147 S-QAVYSLHKT 156 (216)
Q Consensus 147 ~-~~~~~~~~~ 156 (216)
+ +++++=++|
T Consensus 193 kpgG~WIN~GP 203 (270)
T PF07942_consen 193 KPGGYWINFGP 203 (270)
T ss_pred ccCCEEEecCC
Confidence 4 455554444
No 254
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.50 E-value=0.0006 Score=60.34 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=68.3
Q ss_pred cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHHHhcCC-
Q 027945 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---G--ADQVIAIDIDSDSLELASENAADLEL- 96 (216)
Q Consensus 23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~---~--~~~v~~~D~~~~~~~~a~~~~~~~~~- 96 (216)
.+.+.||.++...+...+ .. ..-++..+.|+.||+|.+.+...+. + ...++|.|.++.++..++.|+...+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~-~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 194 GGEFFTPQDISELLARIA-IG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred CceeeCcHHHHHHHHHHh-cc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 456778888776654432 21 1124468999999999988765431 2 24689999999999999999766544
Q ss_pred --CeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945 97 --DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT 129 (216)
Q Consensus 97 --~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~ 129 (216)
......+|....+... ...+||.|++||||..
T Consensus 272 ~~t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 272 YANFNIINADTLTTKEWE-NENGFEVVVSNPPYSI 305 (501)
T ss_pred ccccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence 2334445544322111 1124999999999975
No 255
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.46 E-value=0.011 Score=46.20 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 108 (216)
.+++.++..+ ..+...++.+||-+|+.+|.....++.. + .+.|+++|.++...+..-.-++.- .|+-.+..|+...
T Consensus 57 KLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~P 134 (229)
T PF01269_consen 57 KLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARHP 134 (229)
T ss_dssp HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTSG
T ss_pred HHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCCh
Confidence 4455444433 3335567889999999999988888864 4 568999999997765554443332 2789999999864
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc-------cHHHHHHHHhhhcCCccceEEE
Q 027945 109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS-------TREHVKKAALRDFNASSAEVLC 179 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~ 179 (216)
.....--+..|+|++|-. ......-++..+...++ +.+.++.+.. ..+.+.+.. +.|...+.+.+.
T Consensus 135 ~~Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~-~~L~~~~~~~~e 209 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEV-KKLKEEGFKPLE 209 (229)
T ss_dssp GGGTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHH-HHHHCTTCEEEE
T ss_pred HHhhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHH-HHHHHcCCChhe
Confidence 433322235999999876 22333333344433333 3444444331 233444444 545434445544
Q ss_pred EE
Q 027945 180 EL 181 (216)
Q Consensus 180 ~~ 181 (216)
+.
T Consensus 210 ~i 211 (229)
T PF01269_consen 210 QI 211 (229)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 256
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.42 E-value=0.00047 Score=55.32 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=82.1
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.+..++.|+-+| -.-..+++++-.+ +.++..+|+|+..+....+.++..|. +++.+.-|+....+.+ ...+||+.+
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~-~~~kFDvfi 226 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED-LKRKFDVFI 226 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH-HHhhCCeee
Confidence 567888999999 6666777777554 77999999999999999999999999 5999999999866655 334699999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC-----CcEEEEecCccHHHHHHHH
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS-----QAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 166 (216)
.|||+-.. ....|+.+-...++ +..++.......+.+.+..
T Consensus 227 TDPpeTi~---alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQ 272 (354)
T COG1568 227 TDPPETIK---ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQ 272 (354)
T ss_pred cCchhhHH---HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHH
Confidence 99995432 12234443333332 2333444444555555544
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.40 E-value=0.00085 Score=53.33 Aligned_cols=72 Identities=25% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
...+|+|+|||.--+++.+... ....++|+|||..+++.....+...+...++...|...-+... . .|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~-~---~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKE-P---ADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTS-E---ESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCC-C---cchhhH
Confidence 4679999999999999988864 3459999999999999999999998888888888988765554 3 788886
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.39 E-value=0.00074 Score=49.10 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=55.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCC-------CCCHHHHHHHH
Q 027945 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK-------GVDMDFLSMAL 143 (216)
Q Consensus 73 ~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~-------~~~~~~l~~~~ 143 (216)
+|+|.||.+++++.++++++..++ ++++++.+=..+...- ..+++|++++|.-|-+..+ ...+.-++.++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999999999999999887 6888877765544332 1135999999999966522 23446677777
Q ss_pred hhcC--CcEEEEecCc
Q 027945 144 KVAS--QAVYSLHKTS 157 (216)
Q Consensus 144 ~~~~--~~~~~~~~~~ 157 (216)
+.+. |.+.+++.++
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 7654 5666777774
No 259
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.36 E-value=0.0033 Score=48.72 Aligned_cols=98 Identities=27% Similarity=0.397 Sum_probs=54.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE
Q 027945 22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101 (216)
Q Consensus 22 ~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 101 (216)
....||..|- ..++.++. ..++...|.|+|||.+.++..+.. + -.|...|+... +-.+.
T Consensus 51 Qv~~WP~nPv--d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~--------------n~~Vt 109 (219)
T PF05148_consen 51 QVKKWPVNPV--DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAP--------------NPRVT 109 (219)
T ss_dssp HHCTSSS-HH--HHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEE
T ss_pred HHhcCCCCcH--HHHHHHHH---hcCCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCC--------------CCCEE
Confidence 3456787643 23333332 123457999999999999966543 2 37999998641 12467
Q ss_pred EcccccccccccCCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945 102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS 147 (216)
Q Consensus 102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~ 147 (216)
.+|....|..+.+ .|++|+-.... +. ...++.++.++++
T Consensus 110 acdia~vPL~~~s---vDv~VfcLSLM----GTn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 110 ACDIANVPLEDES---VDVAVFCLSLM----GTNWPDFIREANRVLK 149 (219)
T ss_dssp ES-TTS-S--TT----EEEEEEES-------SS-HHHHHHHHHHHEE
T ss_pred EecCccCcCCCCc---eeEEEEEhhhh----CCCcHHHHHHHHheec
Confidence 7898888887766 99999866633 33 3478888888876
No 260
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0013 Score=50.81 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945 31 HIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 107 (216)
+-++..|.++...+.. .++.+|+|+||-.|.-+..+++.. ...|+++|++| ++... ++.++++|+..
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~-~V~~iq~d~~~ 96 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIP-GVIFLQGDITD 96 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCC-CceEEeeeccC
Confidence 4567777777776654 466899999999999999999763 23599999988 33211 58999999887
Q ss_pred ccccc-----cCCCcccEEEEcCCC
Q 027945 108 LEWRV-----CSVGHVDTVVMNPPF 127 (216)
Q Consensus 108 ~~~~~-----~~~~~fD~v~~npp~ 127 (216)
-.... -...++|+|++|+.=
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCC
Confidence 43221 121237999988653
No 261
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.30 E-value=0.0079 Score=50.05 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=64.1
Q ss_pred CCCEEEEecCCcchHHHHHHH----c-CCCeEEEEeCCHHHHHHHHHHHHhcC---CCeEEEEcccccccccc--c-CCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----L-GADQVIAIDIDSDSLELASENAADLE---LDIDFVQCDIRNLEWRV--C-SVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~-~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~--~-~~~ 116 (216)
++.+++|+|||+|.=+..+.+ . .....+++|+|..+++.+..++.... +.+..+++|..+...-. . ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 556899999999986544433 1 23479999999999999999988322 25666899987742210 0 111
Q ss_pred cccEEEE-cCCCCCCCCCCCHHHHHHHHh-hcC
Q 027945 117 HVDTVVM-NPPFGTRKKGVDMDFLSMALK-VAS 147 (216)
Q Consensus 117 ~fD~v~~-npp~~~~~~~~~~~~l~~~~~-~~~ 147 (216)
...++++ --.++.........+++++.+ .++
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~ 188 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALS 188 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCC
Confidence 2555553 223444445566678888877 543
No 262
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00062 Score=57.94 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=50.5
Q ss_pred EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~ 108 (216)
-|||+|+|||.++...++.|+..|+++|.-..|.+.|++....||. +++++.--..+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 6899999999999999998988999999999999999999999988 676665544443
No 263
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0038 Score=52.26 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~ 128 (216)
..+++|++||.|.+.+-+...|..-+.++|+++.+++.-+.|... ..+...|..+.....-....+|+++.-||..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 358999999999999999988887899999999999999998753 4667777776544331101499999999986
Q ss_pred CC-----C------CCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 129 TR-----K------KGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 129 ~~-----~------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
.. + .+...-.+.++++...+.++++=|..+
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~g 119 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKG 119 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCch
Confidence 54 1 111122233444444457777666554
No 264
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00042 Score=59.69 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=80.1
Q ss_pred CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccccc-CCCcccEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVC-SVGHVDTV 121 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~fD~v 121 (216)
.++.+|||.-|++|..++..++. +..+|++.|.++.+++..+.|.+.|++ .++..+.|+........ ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45679999999999999999975 577999999999999999999999988 57888999877543221 11249999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945 122 VMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLH 154 (216)
Q Consensus 122 ~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 154 (216)
=.||- +....||+.++...+ |.+.+.|
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 99963 566789999988765 4444443
No 265
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.13 E-value=0.00088 Score=55.73 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=56.2
Q ss_pred EEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 52 vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
|+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|... .+..+|+.+....... .+|+++..||....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~--~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIP--DFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCC--CcCEEEecCCCccc
Confidence 589999999999999988876778899999999998888642 4456787776533211 38999999997543
No 266
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.13 E-value=0.00026 Score=59.92 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=56.6
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE 109 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~ 109 (216)
.+|..|.|++||.|-+.+.++..++ .|++.|+++++++..+.|+..|.+ .++.+..|+.++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4778999999999999999998775 999999999999999999999987 4899999998876
No 267
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.13 E-value=0.0033 Score=54.90 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--------------cC
Q 027945 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--------------CS 114 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--------------~~ 114 (216)
.-+++|++||.|.+.+-+...|..-|.++|+++.+.+.-+.|..... ......+|+.+..... ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhhhhhhcc
Confidence 34999999999999999988887778999999999888888753211 2233445555543210 00
Q ss_pred CCcccEEEEcCCCCCC
Q 027945 115 VGHVDTVVMNPPFGTR 130 (216)
Q Consensus 115 ~~~fD~v~~npp~~~~ 130 (216)
-...|+++.-||....
T Consensus 167 ~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 167 IPDHDVLLAGFPCQPF 182 (467)
T ss_pred CCCCCEEEEcCCCCcc
Confidence 0138999999998654
No 268
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0065 Score=47.22 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++.+||++|-|-|...-.+.+....+-+.+|.+|..++..+.+.-...-++.++.+-+.+..... .++.||-|+.|-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L-~d~~FDGI~yDT- 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL-PDKHFDGIYYDT- 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccc-cccCcceeEeec-
Confidence 688899999999999999998887778899999999999988876544447888888888765443 223399999873
Q ss_pred CCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945 127 FGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST 158 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 158 (216)
|... ......+.+.+.+.++ +.+|..|+.-+
T Consensus 178 y~e~-yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 178 YSEL-YEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hhhH-HHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 2111 1223456666777665 68888888754
No 269
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.01 E-value=0.0059 Score=47.00 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcC-------C-CeEEEEcccccccccc
Q 027945 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDIRNLEWRV 112 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~-~~~~~~~d~~~~~~~~ 112 (216)
+.....|||||.|.+.+.++- .+..-+.|.||--..-+..+++++... . ++.+...++..+.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 445799999999999999995 466688999998777777777776653 2 5777888887766554
No 270
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.98 E-value=0.0009 Score=54.72 Aligned_cols=79 Identities=23% Similarity=0.171 Sum_probs=52.3
Q ss_pred EEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc----cCCCcccEEEEc
Q 027945 52 VADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV----CSVGHVDTVVMN 124 (216)
Q Consensus 52 vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~----~~~~~fD~v~~n 124 (216)
-+|||.|.-.+--.+. +.......++|++...+..|..|...|+. .+.+++.........+ .++..||+++||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 4677766544322222 22345889999999999999999999987 4566555433322221 123349999999
Q ss_pred CCCCCC
Q 027945 125 PPFGTR 130 (216)
Q Consensus 125 pp~~~~ 130 (216)
|||...
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 999764
No 271
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.96 E-value=0.005 Score=48.04 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC--
Q 027945 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS-- 114 (216)
Q Consensus 37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 114 (216)
...+....+......|.++|.|.|.++..+...+.++...+|+|+..+.-.+...+....+..++++|+..+...+..
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~ 118 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFSE 118 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccceehHHhhcch
Confidence 333344445566789999999999999999988888999999999888877777665555788888888765433210
Q ss_pred ------C-C-cccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945 115 ------V-G-HVDTVVMNPPFGTRKKGVDMDFLSMALKV 145 (216)
Q Consensus 115 ------~-~-~fD~v~~npp~~~~~~~~~~~~l~~~~~~ 145 (216)
. . ..=-|+.|.||+.. ...-+.+++++...
T Consensus 119 ~~~Rpw~d~~p~~H~IGNLPf~i~-~pliik~l~~~s~r 156 (326)
T KOG0821|consen 119 SLKRPWEDDPPNVHIIGNLPFSVS-TPLIIKWLENISCR 156 (326)
T ss_pred hhcCCcccCCCceEEeccCCcccc-chHHHHHHhhcccc
Confidence 0 0 12367889998654 23444566655433
No 272
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.93 E-value=0.019 Score=41.01 Aligned_cols=90 Identities=29% Similarity=0.415 Sum_probs=56.9
Q ss_pred EEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEccccc--ccccccCCCcccEEEEcCC
Q 027945 52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 52 vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~--~~~~~~~~~~fD~v~~npp 126 (216)
++|+|||+|... .+..... ..++++|+++.+++.++......+.. +.+..+|... .+.... ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEEeeeee
Confidence 999999999976 3333222 37999999999998865554332212 6788888776 344331 23999965544
Q ss_pred CCCCCCCCCHHHHHHHHhhcC
Q 027945 127 FGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~ 147 (216)
.+... ....+..+.+...
T Consensus 129 ~~~~~---~~~~~~~~~~~l~ 146 (257)
T COG0500 129 LHLLP---PAKALRELLRVLK 146 (257)
T ss_pred hhcCC---HHHHHHHHHHhcC
Confidence 43332 3455666666554
No 273
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.029 Score=43.26 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 109 (216)
.+++.+|.-+. .++..++.+||=+|+.+|...-.++.. +.+.++++|.++......-.-++.-. ++-.+..|+....
T Consensus 60 KLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~~P~ 137 (231)
T COG1889 60 KLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDARKPE 137 (231)
T ss_pred HHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccCCcH
Confidence 45555555443 335678899999999999988888864 55689999999877655444443321 6888999997643
Q ss_pred ccccCCCcccEEEEcCC
Q 027945 110 WRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 110 ~~~~~~~~fD~v~~npp 126 (216)
....--++.|+|+.|-.
T Consensus 138 ~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 138 KYRHLVEKVDVIYQDVA 154 (231)
T ss_pred HhhhhcccccEEEEecC
Confidence 33222235999998865
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.013 Score=49.02 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc------
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV------ 112 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~------ 112 (216)
...++.+|||+|+--|.=+..+.+.. ...|++-|.++..+......+..... +..+...|+..++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 45688999999999999887777642 22899999999999888877765544 4444455544433221
Q ss_pred cCCCcccEEEEcCCCCCCC---C------------------CCCHHHHHHHHhh---cCCcEEEEecCcc
Q 027945 113 CSVGHVDTVVMNPPFGTRK---K------------------GVDMDFLSMALKV---ASQAVYSLHKTST 158 (216)
Q Consensus 113 ~~~~~fD~v~~npp~~~~~---~------------------~~~~~~l~~~~~~---~~~~~~~~~~~~~ 158 (216)
....+||.|++|-|..... + ......+.+.++. ++..+|..|.-..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 1223599999999987651 0 0123445555444 3458998887654
No 275
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.74 E-value=0.0079 Score=48.89 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=53.3
Q ss_pred CCEEEEecCCcc-hHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHH-hcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945 49 NKVVADFGCGCG-TLGAAATLL-G-ADQVIAIDIDSDSLELASENAA-DLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 49 ~~~vLD~g~G~G-~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~-~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
+.+|+=+|||.= ..++.+++. + ...|+++|+|+.+++.+++-+. ..++ +++++.+|..+....... ||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~---~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKE---YDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccccc---CCEEE
Confidence 359999999954 445666643 3 4589999999999999998877 3343 789999999876654434 99999
Q ss_pred EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 123 MNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 123 ~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
..---+. ....-.+.+..+.+..+
T Consensus 198 lAalVg~-~~e~K~~Il~~l~~~m~ 221 (276)
T PF03059_consen 198 LAALVGM-DAEPKEEILEHLAKHMA 221 (276)
T ss_dssp E-TT-S-----SHHHHHHHHHHHS-
T ss_pred Ehhhccc-ccchHHHHHHHHHhhCC
Confidence 6422110 11233456677766655
No 276
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.73 E-value=0.0093 Score=47.67 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=58.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+....|.|+|||-+.++. + -..+|++.|+.+ .+-.++.+|....+..+.+ .|++|+-..
T Consensus 179 ~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~s---vDvaV~CLS 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA--------------VNERVIACDMRNVPLEDES---VDVAVFCLS 237 (325)
T ss_pred cCceEEEecccchhhhhh---c-cccceeeeeeec--------------CCCceeeccccCCcCccCc---ccEEEeeHh
Confidence 345699999999998765 2 244899999864 1347788999998888867 999997555
Q ss_pred CCCCCCCCCH-HHHHHHHhhcC--CcEEEE
Q 027945 127 FGTRKKGVDM-DFLSMALKVAS--QAVYSL 153 (216)
Q Consensus 127 ~~~~~~~~~~-~~l~~~~~~~~--~~~~~~ 153 (216)
. .+.++ .+++++.+++. |.+|+.
T Consensus 238 L----Mgtn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 238 L----MGTNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred h----hcccHHHHHHHHHHHhccCceEEEE
Confidence 3 34433 67888888765 456653
No 277
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.034 Score=48.27 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=64.7
Q ss_pred CCC-EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 48 SNK-VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 48 ~~~-~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+.. ++|-+|||.-.++..+-..|...++.+|+|+.+++.+............+...|.....+.+.+ ||+|+.=+-
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedES---FdiVIdkGt 123 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDES---FDIVIDKGT 123 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcc---eeEEEecCc
Confidence 444 9999999999999999998888999999999999888665432222578899999998888877 999997665
Q ss_pred CCCC
Q 027945 127 FGTR 130 (216)
Q Consensus 127 ~~~~ 130 (216)
++..
T Consensus 124 lDal 127 (482)
T KOG2352|consen 124 LDAL 127 (482)
T ss_pred cccc
Confidence 5554
No 278
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.67 E-value=0.0028 Score=49.31 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=61.6
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT 129 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~ 129 (216)
.++||+||=+........ +.-.|+.+|+++ . .-.+.+.|+.+.+.+....++||+|++....+.
T Consensus 53 lrlLEVGals~~N~~s~~--~~fdvt~IDLns---------~-----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS--GWFDVTRIDLNS---------Q-----HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCccccc--CceeeEEeecCC---------C-----CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 599999998665544432 333699999986 1 246789999998765434567999999777766
Q ss_pred CCC-CCCHHHHHHHHhhcC--Cc-----EEEEecC
Q 027945 130 RKK-GVDMDFLSMALKVAS--QA-----VYSLHKT 156 (216)
Q Consensus 130 ~~~-~~~~~~l~~~~~~~~--~~-----~~~~~~~ 156 (216)
.+. ...-+.++++.+.+. +. +|++...
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 543 334467777776654 34 6666544
No 279
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.66 E-value=0.0057 Score=51.76 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=70.9
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.++..++|+|||.|......+....+.++|++.++..+..+........+ +..++.+|+...++.+.. ||.+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~---fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNT---FDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccc---cCcEEEE
Confidence 35568999999999999999998777999999998877777665555444 455689999998888766 9988863
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcCC
Q 027945 125 PPFGTRKKGVDMDFLSMALKVASQ 148 (216)
Q Consensus 125 pp~~~~~~~~~~~~l~~~~~~~~~ 148 (216)
-.-.+ .+.....++++.+...+
T Consensus 186 d~~~~--~~~~~~~y~Ei~rv~kp 207 (364)
T KOG1269|consen 186 EVVCH--APDLEKVYAEIYRVLKP 207 (364)
T ss_pred eeccc--CCcHHHHHHHHhcccCC
Confidence 22111 12345667777776553
No 280
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.58 E-value=0.00085 Score=46.34 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=25.8
Q ss_pred EEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 53 ADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 53 LD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
||+|+..|..+..+++. +..+++++|..+. .+.++..++..+. +++++.++..+...... .+++|+++.|-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 68999999988877753 2237999999985 3333333333333 69999999987644332 224999999864
No 281
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.44 E-value=0.039 Score=43.87 Aligned_cols=127 Identities=14% Similarity=0.173 Sum_probs=84.4
Q ss_pred EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCCCCCCC
Q 027945 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRK 131 (216)
Q Consensus 53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~ 131 (216)
|...|||-.++..+.+ ...++.++|+.|.=....+.|... +-++.+..+|-....... ...++=-+|+.||||....
T Consensus 93 l~~YpGSP~lA~~llR-~qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~ 170 (279)
T COG2961 93 LRYYPGSPLLARQLLR-EQDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD 170 (279)
T ss_pred cccCCCCHHHHHHHcc-hhceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc
Confidence 9999999999999988 455999999999999999988872 227899999966532211 1112368999999998663
Q ss_pred -CCCCHHHHHHHHhhcCCcEEEEecCcc-HHHHHHHHhhhcCCccceEEEEEe
Q 027945 132 -KGVDMDFLSMALKVASQAVYSLHKTST-REHVKKAALRDFNASSAEVLCELR 182 (216)
Q Consensus 132 -~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 182 (216)
.......++++.+.....+|.+-.|-- ++.+.... +.|++.+...+..+.
T Consensus 171 eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~-~~L~~~~i~kiL~iE 222 (279)
T COG2961 171 EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFL-RALEALGIRKILQIE 222 (279)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHH-HHHhhcCccceeeeE
Confidence 223345566666666667777666643 44444443 444434443333333
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.39 E-value=0.0082 Score=52.21 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=42.0
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAI---DIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++||+|||+|.++..|..++. .++.+ |..+..++.|.++ |+-.-+-......+++.+.. ||+|-|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~s~rLPfp~~~---fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGVLGSQRLPFPSNA---FDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----CcchhhhhhccccccCCccc---hhhhhc
Confidence 5899999999999999999875 33333 3334455555444 22111112234557777666 999875
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.36 E-value=0.0082 Score=41.42 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~ 81 (216)
.+++.++..-.......+...-+|+|||+|.+...|.+.|. .-+|+|.-.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 35666555544443443455799999999999999998876 678888743
No 284
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.16 E-value=0.00085 Score=51.73 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~ 90 (216)
.+.++||+|+|.|-++..++-. ..+|+++|+|..|....+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence 4579999999999999999874 55899999999888777654
No 285
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.023 Score=46.27 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
+..+++|-+|-|.|.+....+++. ..++..+|++...++..+..+...-. ++.+..+|-..+.... ...+||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-KENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-ccCCceE
Confidence 466899999999999999888874 67999999999999999988876532 6899999988776554 3446999
Q ss_pred EEEcCC--CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945 121 VVMNPP--FGTRKKGVDMDFLSMALKVASQAVYSLHKTST 158 (216)
Q Consensus 121 v~~npp--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (216)
|+.|-. -+....--...+.....+.+++..|+++-...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 997532 11110011123445555556655565555443
No 286
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.072 Score=43.83 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCC----CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH---HhcC---------
Q 027945 32 IASRMLYTAENSFGD----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---ADLE--------- 95 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~----~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~--------- 95 (216)
..+.++..+...++. ....+||-+|||.|.++..++..|. .+-|-|.+-.|+=...-.+ +..+
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 344455555444332 2345899999999999999998876 6667777766653332222 1100
Q ss_pred ---------------------------C--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945 96 ---------------------------L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146 (216)
Q Consensus 96 ---------------------------~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~ 146 (216)
. .....-||+.+.-......+.||+|+.. |.-.....-+++++.+.+.+
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa~NileYi~tI~~iL 286 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTAHNILEYIDTIYKIL 286 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeechHHHHHHHHHHHHhc
Confidence 0 1222345555543332222459998875 44344455567777776665
Q ss_pred C-CcEEEEecC
Q 027945 147 S-QAVYSLHKT 156 (216)
Q Consensus 147 ~-~~~~~~~~~ 156 (216)
. +++++=+.|
T Consensus 287 k~GGvWiNlGP 297 (369)
T KOG2798|consen 287 KPGGVWINLGP 297 (369)
T ss_pred cCCcEEEeccc
Confidence 4 555554443
No 287
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.75 E-value=0.062 Score=44.78 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=71.1
Q ss_pred CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT 129 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~ 129 (216)
...+|+|.|.|..+..+.+ -..++-+++.+...+-.+..++. .| ++.+-+|.+.- .+. -|+|++---.|+
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~-~P~-----~daI~mkWiLhd 248 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQD-TPK-----GDAIWMKWILHD 248 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC--cceeccccccc-CCC-----cCeEEEEeeccc
Confidence 6899999999999999988 44479999999888877777775 44 78888888776 332 689998777777
Q ss_pred CCCCCCHHHHHHHHhhcC
Q 027945 130 RKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~ 147 (216)
-.+..-..+++++.+..+
T Consensus 249 wtDedcvkiLknC~~sL~ 266 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLP 266 (342)
T ss_pred CChHHHHHHHHHHHHhCC
Confidence 777778899999988876
No 288
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.72 E-value=0.12 Score=40.27 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCCEEEEecCCcchHHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-----cCCCc
Q 027945 48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-----CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~~ 117 (216)
++..|+|+|.-.|+-.+.+|+. +.++|+|+|++............-..-+++++++|..+...-. .....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 6679999999999888877752 4569999999643332221111001127999999987643222 11123
Q ss_pred ccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHH
Q 027945 118 VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKA 165 (216)
Q Consensus 118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (216)
..+|+.|---. .......++........+-|.++-....+++...
T Consensus 112 ~vlVilDs~H~---~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~ 156 (206)
T PF04989_consen 112 PVLVILDSSHT---HEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPES 156 (206)
T ss_dssp SEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS
T ss_pred ceEEEECCCcc---HHHHHHHHHHhCccCCCCCEEEEEeccccccccc
Confidence 56777764311 1233344554444444566666555444444443
No 289
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.58 E-value=0.042 Score=43.90 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=57.1
Q ss_pred EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCCCCCCC
Q 027945 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRK 131 (216)
Q Consensus 53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~ 131 (216)
+....||-.++..+.+. ..+.+.+|+.+.-.+..+.++... -++.+++.|.++..... ....+=-+|+.||||....
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~ 139 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKD 139 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STT
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCch
Confidence 88999999999999885 559999999999999998887652 27899999988843221 1111257999999998763
Q ss_pred C-CCCHHHHHHHHhhcCCcEEEEecC
Q 027945 132 K-GVDMDFLSMALKVASQAVYSLHKT 156 (216)
Q Consensus 132 ~-~~~~~~l~~~~~~~~~~~~~~~~~ 156 (216)
+ ......+.++.+--+..+|.+=.|
T Consensus 140 dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 140 DYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 2 223345566666555566666555
No 290
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.089 Score=44.18 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred cccCCCCHHHHHHH-------HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc---------CCCeEEEEeCCHHHHHH
Q 027945 23 LEQYPTGPHIASRM-------LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLEL 86 (216)
Q Consensus 23 ~~~~~t~~~~~~~~-------l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~---------~~~~v~~~D~~~~~~~~ 86 (216)
.++|-|.+++.... +......+..+.+..++|+|+|+|.++..+.+. ...++..+|+|+...+.
T Consensus 45 ~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 45 KGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred cCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 34577776643322 122222334556678999999999998877752 24589999999999988
Q ss_pred HHHHHHhcC
Q 027945 87 ASENAADLE 95 (216)
Q Consensus 87 a~~~~~~~~ 95 (216)
-+.+++...
T Consensus 125 Qk~~L~~~~ 133 (370)
T COG1565 125 QKETLKATE 133 (370)
T ss_pred HHHHHhccc
Confidence 888887653
No 291
>PRK11524 putative methyltransferase; Provisional
Probab=95.47 E-value=0.059 Score=44.16 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=38.4
Q ss_pred CeEEEEcccccccccccCCCcccEEEEcCCCCCCCC----------CCC----HHHHHHHHhhcC--CcEEEEecCccHH
Q 027945 97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK----------GVD----MDFLSMALKVAS--QAVYSLHKTSTRE 160 (216)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~----------~~~----~~~l~~~~~~~~--~~~~~~~~~~~~~ 160 (216)
..+++++|+.+..... .+++||+|++||||..... ... ..++..+.+.++ +.+|+.+......
T Consensus 8 ~~~i~~gD~~~~l~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 8 AKTIIHGDALTELKKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred CCEEEeccHHHHHHhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 3578999999865332 2234999999999975211 001 245666666664 4666665554433
No 292
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.34 E-value=0.59 Score=35.01 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (216)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 108 (216)
+.+-+..+...+... .....+|+=+||=+-...+.-......+++..|+|..... .+.+ +++.=|....
T Consensus 8 s~~T~~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCCc-ceEECCCCCh
Confidence 334444455554442 2245789998887766665552234558999999974322 1212 3454454432
Q ss_pred cc-cccCCCcccEEEEcCCCC
Q 027945 109 EW-RVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 109 ~~-~~~~~~~fD~v~~npp~~ 128 (216)
.. ...-.++||+|++||||-
T Consensus 77 ~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 77 EELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred hhhhhhcCCCceEEEECCCCC
Confidence 11 111234699999999993
No 293
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.13 E-value=0.13 Score=41.39 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCEEEEecCCcchHHHHHHHc---------CCCeEEEEeCCHHHHHHHHHHHHh
Q 027945 49 NKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD 93 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~~---------~~~~v~~~D~~~~~~~~a~~~~~~ 93 (216)
.-+|+|+|+|+|.++..+.+. ...+++.+|+|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999888763 124899999999999888888866
No 294
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.08 E-value=0.29 Score=39.60 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=58.5
Q ss_pred CEEEEecCCcc--hHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccccc---CCCccc--
Q 027945 50 KVVADFGCGCG--TLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVC---SVGHVD-- 119 (216)
Q Consensus 50 ~~vLD~g~G~G--~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~---~~~~fD-- 119 (216)
.-.||+|||-- ....++++. +.++|+-+|.||..+..++..+..+.. ...++++|+.+...-.. ..+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 58999999944 245556543 567999999999999999999887653 37899999988432110 001133
Q ss_pred ---EEEEcCCCCCCCC-CCCHHHHHHHHhhcCCcEE
Q 027945 120 ---TVVMNPPFGTRKK-GVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 120 ---~v~~npp~~~~~~-~~~~~~l~~~~~~~~~~~~ 151 (216)
.+++....+...+ ......+......+.++-|
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~ 185 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY 185 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence 6667767766655 3445677777777664333
No 295
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.028 Score=49.27 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=70.8
Q ss_pred cCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH---c--CCCeEEEEeCCHHHHHHH
Q 027945 13 LEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL---L--GADQVIAIDIDSDSLELA 87 (216)
Q Consensus 13 ~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~---~--~~~~v~~~D~~~~~~~~a 87 (216)
.+.|.++.+++.+|. +.+.+.+++.+-.. ......+|.-+|+|-|-+.-...+ . -.-+++++|-+|.++-..
T Consensus 335 YetFEkD~VKY~~Yq--~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQ--QAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred hhhhhccchHHHHHH--HHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 456788888888765 34555555444222 111145788999999976543332 1 123899999999998766
Q ss_pred HH-HHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945 88 SE-NAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 88 ~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
+. |.+.++-+++++..|...+..+... .|++++.
T Consensus 412 ~~~n~~~W~~~Vtii~~DMR~w~ap~eq---~DI~VSE 446 (649)
T KOG0822|consen 412 QNRNFECWDNRVTIISSDMRKWNAPREQ---ADIIVSE 446 (649)
T ss_pred hhhchhhhcCeeEEEeccccccCCchhh---ccchHHH
Confidence 44 4455555899999999998865334 9999863
No 296
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.74 E-value=0.054 Score=37.52 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=22.7
Q ss_pred cccEEEEcCCCCCCCC------------CCCHHHHHHHHhhcCC
Q 027945 117 HVDTVVMNPPFGTRKK------------GVDMDFLSMALKVASQ 148 (216)
Q Consensus 117 ~fD~v~~npp~~~~~~------------~~~~~~l~~~~~~~~~ 148 (216)
+||+|+.||||..... ..+..++..+++.+.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G 45 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNG 45 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCC
Confidence 5999999999987631 1233577888777743
No 297
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.18 Score=41.25 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=43.5
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 94 (216)
....+..|||+.+|+|..++...+.+. ..+|+|+++..++.+..++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 445788999999999999999998765 8999999999999999998764
No 298
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.58 E-value=1.2 Score=34.78 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCcc----hHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945 33 ASRMLYTAENSFGDVSNKVVADFGCGCG----TLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (216)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G----~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 105 (216)
.++.+..+.. ....+.+++.+|+-| .+++..|.+ -.++++++-.++..+...++.+...+. .++|+.++.
T Consensus 29 ~aEfISAlAA---G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALAA---GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHhc---cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 3444444443 235567888866543 234444433 355899999999988888888887776 369999985
Q ss_pred c-cccccccCCCcccEEEEcCC
Q 027945 106 R-NLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 106 ~-~~~~~~~~~~~fD~v~~npp 126 (216)
. +....... .|+++.|.=
T Consensus 106 ~e~~~~~~~~---iDF~vVDc~ 124 (218)
T PF07279_consen 106 PEEVMPGLKG---IDFVVVDCK 124 (218)
T ss_pred HHHHHhhccC---CCEEEEeCC
Confidence 4 34444434 999998753
No 299
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.52 E-value=0.15 Score=42.78 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=66.1
Q ss_pred HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-C----eEEEEccccccc
Q 027945 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-D----IDFVQCDIRNLE 109 (216)
Q Consensus 37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~----~~~~~~d~~~~~ 109 (216)
|..+...-......++||+|.|.|.-..++-.. + ...++.+|.++..-+........... . ..-+..|-..++
T Consensus 102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 333333334566778999999999877776654 2 45788999998665555444443322 1 222333333333
Q ss_pred ccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945 110 WRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR 159 (216)
Q Consensus 110 ~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 159 (216)
..+ . +++++. |--.+.......-..++.+..... |..+++|-+++.
T Consensus 182 ~ad-~---ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 182 AAD-L---YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ccc-e---eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 333 3 676664 222111111111125666666543 677888888774
No 300
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=94.36 E-value=0.096 Score=41.97 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=28.7
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~ 88 (216)
...+++|++||+|.++..+.+. ...|+.-|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 6789999999999999999874 448999999987665444
No 301
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.34 E-value=0.032 Score=45.18 Aligned_cols=38 Identities=34% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHH
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~ 84 (216)
..+++|||+|||+|..++.+...+...+...|.+...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 57899999999999999999988867899999988776
No 302
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.30 E-value=0.35 Score=34.50 Aligned_cols=65 Identities=26% Similarity=0.385 Sum_probs=36.9
Q ss_pred CCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE-c
Q 027945 48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM-N 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~-n 124 (216)
+..+++|+|.|.=. .+..+.++|. .|+++|+++. ++. . .+.++..|+++..... .. .|+|++ +
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~--g~~~v~DDif~P~l~iY~~---a~lIYSiR 78 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E--GVNFVVDDIFNPNLEIYEG---ADLIYSIR 78 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHHHTT---EEEEEEES
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c--CcceeeecccCCCHHHhcC---CcEEEEeC
Confidence 34599999999765 5777777786 9999999986 222 1 4788999999855442 23 899995 7
Q ss_pred CC
Q 027945 125 PP 126 (216)
Q Consensus 125 pp 126 (216)
||
T Consensus 79 PP 80 (127)
T PF03686_consen 79 PP 80 (127)
T ss_dssp --
T ss_pred CC
Confidence 77
No 303
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=0.13 Score=43.42 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=67.1
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.+.++.+|+|++|-.|.-+..++.. ...++++.|.+....+..+..+...|+ .++...+|+...+... .......|
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~-~~~~v~~i 288 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPE-KFRDVTYI 288 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcc-cccceeEE
Confidence 4567789999999999988777753 466999999999999999999999988 5677799988852221 22237799
Q ss_pred EEcCCCCCC
Q 027945 122 VMNPPFGTR 130 (216)
Q Consensus 122 ~~npp~~~~ 130 (216)
++||+....
T Consensus 289 L~DpscSgS 297 (413)
T KOG2360|consen 289 LVDPSCSGS 297 (413)
T ss_pred EeCCCCCCC
Confidence 999998765
No 304
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.03 E-value=0.18 Score=42.59 Aligned_cols=42 Identities=29% Similarity=0.216 Sum_probs=34.5
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~ 89 (216)
+-..++|+|+|.|.++..++-...-.|+++|-|....+.|+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 336899999999999999996555599999999777766654
No 305
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.99 E-value=0.21 Score=39.67 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=51.8
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHH----HHHHHHHHHhcCCCeEEEEcccccccccccCCCcc
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENAADLELDIDFVQCDIRNLEWRVCSVGHV 118 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~----~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f 118 (216)
-..++.+||=+|+++|...-.++.. +..-|+++|.++.+ +.+|+++ .++-.+.-|+.......-.-+-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchheeeeeeeE
Confidence 3468899999999999876666653 34579999988654 3333333 26788888987643322111238
Q ss_pred cEEEEcCC
Q 027945 119 DTVVMNPP 126 (216)
Q Consensus 119 D~v~~npp 126 (216)
|+||+|-+
T Consensus 228 DvIFaDva 235 (317)
T KOG1596|consen 228 DVIFADVA 235 (317)
T ss_pred EEEeccCC
Confidence 99998866
No 306
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.91 E-value=0.76 Score=39.36 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=55.3
Q ss_pred CEEEEecCCc-chH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc---ccCCCcccEEEE-
Q 027945 50 KVVADFGCGC-GTL-GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---VCSVGHVDTVVM- 123 (216)
Q Consensus 50 ~~vLD~g~G~-G~~-~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~fD~v~~- 123 (216)
++||-+|||. |.. ...+++++..+|+..|.++...+.+...... +++..+.|+.+...- ... +|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~---~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKD---FDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhc---CCEEEEe
Confidence 4689999952 322 3334555657999999998888887776433 688888888875322 123 799995
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 124 NPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 124 npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
-|||... ..++.+.+.+-
T Consensus 76 ~p~~~~~------~i~ka~i~~gv 93 (389)
T COG1748 76 APPFVDL------TILKACIKTGV 93 (389)
T ss_pred CCchhhH------HHHHHHHHhCC
Confidence 5554433 44555554443
No 307
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.78 E-value=0.041 Score=44.62 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe-EEEEcccccccccccCCCcccEEEEcC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
..+..++|.|||.|-....- +...++|+|+....+..++.. +. ....+|+...+....+ ||.+++--
T Consensus 44 ~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~s---~d~~lsia 111 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREES---FDAALSIA 111 (293)
T ss_pred CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCCc---cccchhhh
Confidence 34779999999999654322 444799999998777777655 23 6889999998887766 99999877
Q ss_pred CCCCC-CCCCCHHHHHHHHhhcC
Q 027945 126 PFGTR-KKGVDMDFLSMALKVAS 147 (216)
Q Consensus 126 p~~~~-~~~~~~~~l~~~~~~~~ 147 (216)
.-|+. ........+++..+..+
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lr 134 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLR 134 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhc
Confidence 76666 33445566777776654
No 308
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.61 E-value=0.45 Score=39.00 Aligned_cols=80 Identities=26% Similarity=0.341 Sum_probs=61.1
Q ss_pred CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
...++.||--|.|+|. ++.++|++|+ +++..|++++..+...+.++.+| ++..+..|+.+...-. ..-
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 4578899999999994 6888888887 99999999999888888888766 6778888877632211 122
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
|..|++|.|-.-
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 569999987544
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.57 E-value=0.2 Score=41.56 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=38.4
Q ss_pred CCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 46 DVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 46 ~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
...+.+||-+|+| .|..+...|+. |+.+|+.+|+++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3578899999999 57777777764 88999999999999999998
No 310
>PTZ00357 methyltransferase; Provisional
Probab=92.92 E-value=0.33 Score=44.30 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=48.1
Q ss_pred CEEEEecCCcchHHHHHH---H-cC-CCeEEEEeCCHHHHHHHHHHH---Hhc-------CCCeEEEEcccccccccc--
Q 027945 50 KVVADFGCGCGTLGAAAT---L-LG-ADQVIAIDIDSDSLELASENA---ADL-------ELDIDFVQCDIRNLEWRV-- 112 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~---~-~~-~~~v~~~D~~~~~~~~a~~~~---~~~-------~~~~~~~~~d~~~~~~~~-- 112 (216)
..|+-+|+|-|-+.-... + .+ .-+++++|-|+.++.....+. ..+ |-.++++..|..++....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 368999999997643332 2 23 238999999977655544443 233 114899999999875331
Q ss_pred ------cCCCcccEEEE
Q 027945 113 ------CSVGHVDTVVM 123 (216)
Q Consensus 113 ------~~~~~fD~v~~ 123 (216)
...+++|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 01146999997
No 311
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.16 E-value=2.9 Score=33.09 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.....++..+.++.++.+|+.+...-. ...+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 357889999986653 3444555565 8999999988877776666554446778888887632110 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.|....
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 599999887654
No 312
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.37 E-value=2.3 Score=29.31 Aligned_cols=64 Identities=23% Similarity=0.349 Sum_probs=42.3
Q ss_pred CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCC
Q 027945 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPP 126 (216)
Q Consensus 57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp 126 (216)
||.|.++..+++. +..+|+.+|.+++.++.++.. .+.++.+|..+...-. ..-.+.|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 6777787777753 344899999999998887766 3688999998743211 11123888887433
No 313
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.22 E-value=1.7 Score=36.48 Aligned_cols=47 Identities=34% Similarity=0.420 Sum_probs=38.3
Q ss_pred CCCCCCEEEEecCC-cchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (216)
Q Consensus 45 ~~~~~~~vLD~g~G-~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~ 92 (216)
...++++|+-.|+| .|.+++.+++ .+ ++|+++|.+++-.+.|++.-.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC
Confidence 45678899999988 4467888887 46 699999999999999988743
No 314
>PRK13699 putative methylase; Provisional
Probab=90.90 E-value=0.13 Score=40.70 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=22.4
Q ss_pred eEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945 98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~ 128 (216)
.+++++|+.+..... .++++|+|+.||||.
T Consensus 2 ~~l~~gD~le~l~~l-pd~SVDLIiTDPPY~ 31 (227)
T PRK13699 2 SRFILGNCIDVMARF-PDNAVDFILTDPPYL 31 (227)
T ss_pred CeEEechHHHHHHhC-CccccceEEeCCCcc
Confidence 367899998864433 233499999999996
No 315
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=90.79 E-value=3.6 Score=30.03 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEecCCcch---HHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945 51 VVADFGCGCGT---LGAAATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV 118 (216)
Q Consensus 51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f 118 (216)
++|=.|+++|. ++..+++.|...|+.+..+ ....+.....++..+.++.+++.|+.+...-. ...++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l 81 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL 81 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56777766552 3445555566688999988 56666666666655667899999976632110 122349
Q ss_pred cEEEEcCCCCCCCC--CCCHHHHHHHHhh
Q 027945 119 DTVVMNPPFGTRKK--GVDMDFLSMALKV 145 (216)
Q Consensus 119 D~v~~npp~~~~~~--~~~~~~l~~~~~~ 145 (216)
|.++.+........ ....+.+.+.+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~ 110 (167)
T PF00106_consen 82 DILINNAGIFSDGSLDDLSEEELERVFRV 110 (167)
T ss_dssp SEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhcccc
Confidence 99998877655422 2233455555543
No 316
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=0.42 Score=36.60 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEc-ccccccc
Q 027945 35 RMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQC-DIRNLEW 110 (216)
Q Consensus 35 ~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-d~~~~~~ 110 (216)
..|.++...+.. .++.+|||+||..|.-+....++ +.+.|.|+|+..- ..-. .++++++ |+.+...
T Consensus 55 FKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~--Ga~~i~~~dvtdp~~ 124 (232)
T KOG4589|consen 55 FKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE--GATIIQGNDVTDPET 124 (232)
T ss_pred hhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC--CcccccccccCCHHH
Confidence 344444444443 46789999999999998888765 4668999998531 0111 3455555 5544211
Q ss_pred cc-----cCCCcccEEEEcCCCC
Q 027945 111 RV-----CSVGHVDTVVMNPPFG 128 (216)
Q Consensus 111 ~~-----~~~~~fD~v~~npp~~ 128 (216)
.. -..-+.|+|++|..=+
T Consensus 125 ~~ki~e~lp~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 125 YRKIFEALPNRPVDVVLSDMAPN 147 (232)
T ss_pred HHHHHHhCCCCcccEEEeccCCC
Confidence 10 0112499999986533
No 317
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.62 E-value=4.7 Score=33.71 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|+++|. +...+++.|. +|+.++.++..++.....++..+.++.++..|+.+...-. ...+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456788888876542 3444555565 8999999998888777777666666777888886532110 0114
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|++|.|..+.
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 589999887543
No 318
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.03 E-value=3.5 Score=29.64 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=47.9
Q ss_pred CCCCCCEEEEecCCcch--HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945 45 GDVSNKVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~--~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
...+++++|=+|+|--+ ....++..|+.+++.+.-+.+..+.....+. +..++++..+ +....... +|+|+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~~~~~~~~~~--~~~~~~~~---~DivI 80 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--GVNIEAIPLE--DLEEALQE---ADIVI 80 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--GCSEEEEEGG--GHCHHHHT---ESEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--ccccceeeHH--HHHHHHhh---CCeEE
Confidence 45688999999997433 3444556688889999998776655555542 2235554443 33322224 99999
Q ss_pred EcCCCC
Q 027945 123 MNPPFG 128 (216)
Q Consensus 123 ~npp~~ 128 (216)
.-.|-.
T Consensus 81 ~aT~~~ 86 (135)
T PF01488_consen 81 NATPSG 86 (135)
T ss_dssp E-SSTT
T ss_pred EecCCC
Confidence 876643
No 319
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=6.7 Score=31.61 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=72.1
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHH----HcC-CCeEEEEeCCHHHHHHHHHHH-Hhc-C
Q 027945 24 EQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAAT----LLG-ADQVIAIDIDSDSLELASENA-ADL-E 95 (216)
Q Consensus 24 ~~~~t~~~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~----~~~-~~~v~~~D~~~~~~~~a~~~~-~~~-~ 95 (216)
+.|||-.+ +.+++....++.. ..+.+++|+|+|+-.-+..+. .++ ....+.+|++...++.....+ ... +
T Consensus 55 EYYpTRtE--aaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~ 132 (321)
T COG4301 55 EYYPTRTE--AAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG 132 (321)
T ss_pred cccCchhH--HHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC
Confidence 45666532 3344443333222 346799999999986555444 334 458999999998876654433 333 3
Q ss_pred CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEe
Q 027945 96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH 154 (216)
Q Consensus 96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (216)
+.+.-+.+|...........+.==+++.....+...++.-..|+..+-....++=|++.
T Consensus 133 l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 133 LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 36777888876644332111112233333344444555556677777666654444443
No 320
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.88 E-value=1.1 Score=37.85 Aligned_cols=45 Identities=38% Similarity=0.489 Sum_probs=37.2
Q ss_pred CCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHH
Q 027945 47 VSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASENA 91 (216)
Q Consensus 47 ~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~ 91 (216)
.++.+|+-+||| .|.+++.+++. |+.+|+++|.++..++.|++..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 344499999999 57777777764 7889999999999999998854
No 321
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.33 E-value=9.9 Score=31.19 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=44.2
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH---HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccE
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 120 (216)
..++++|-+|+| |. ....+++.|..+|+.++.++ +..+...+.+...+..+.+...|+.+...-...-.+.|+
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 467789999997 53 22334456777799999986 333333333322221333444555432110000012799
Q ss_pred EEEcCCCCCC
Q 027945 121 VVMNPPFGTR 130 (216)
Q Consensus 121 v~~npp~~~~ 130 (216)
||.+-|-+..
T Consensus 203 lINaTp~Gm~ 212 (289)
T PRK12548 203 LVNATLVGMK 212 (289)
T ss_pred EEEeCCCCCC
Confidence 9987776543
No 322
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.32 E-value=1.2 Score=32.63 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=31.8
Q ss_pred EecCCcc--hHHHHHH--Hc-CCCeEEEEeCCHHHHHHHHHH--HHhcCC--CeEEEEccc
Q 027945 54 DFGCGCG--TLGAAAT--LL-GADQVIAIDIDSDSLELASEN--AADLEL--DIDFVQCDI 105 (216)
Q Consensus 54 D~g~G~G--~~~~~l~--~~-~~~~v~~~D~~~~~~~~a~~~--~~~~~~--~~~~~~~d~ 105 (216)
|+|+..| .....+. .. ...+|+++|.+|..++..+.+ +..++. .+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 22 356899999999999999999 655533 355555444
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.24 E-value=0.2 Score=43.65 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc----cCCCcccEEE
Q 027945 49 NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV----CSVGHVDTVV 122 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~----~~~~~fD~v~ 122 (216)
+.++|-+|-|.|.+...+.. .+...+++++++|.+++.|+.+...... +..++..|..++.... ..+..||+++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 45789999999999888774 4667999999999999999988754432 3455666655543221 1223599999
Q ss_pred Ec
Q 027945 123 MN 124 (216)
Q Consensus 123 ~n 124 (216)
.|
T Consensus 376 ~d 377 (482)
T KOG2352|consen 376 VD 377 (482)
T ss_pred EE
Confidence 74
No 324
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.13 E-value=0.78 Score=37.01 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhc--CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc---------------
Q 027945 32 IASRMLYTAENSF--GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL--------------- 94 (216)
Q Consensus 32 ~~~~~l~~~~~~~--~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--------------- 94 (216)
+....|..+...+ ...++.++||+|||.-......+..-+.+++..|..+...+..++.++..
T Consensus 38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l 117 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL 117 (256)
T ss_dssp HHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence 4444444443333 24567799999999976655555445779999999998887766655432
Q ss_pred -CC-------------Ce-EEEEccccccccccc---CCCcccEEEE
Q 027945 95 -EL-------------DI-DFVQCDIRNLEWRVC---SVGHVDTVVM 123 (216)
Q Consensus 95 -~~-------------~~-~~~~~d~~~~~~~~~---~~~~fD~v~~ 123 (216)
|. .+ +++.+|+....+-.. ...+||.|++
T Consensus 118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s 164 (256)
T PF01234_consen 118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS 164 (256)
T ss_dssp TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE
T ss_pred cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhh
Confidence 10 13 477888887543321 1124999987
No 325
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=88.95 E-value=0.56 Score=43.26 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=37.6
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (216)
.+.+++|+.+|-|.+.+..++.|+ .|+++|++|.++-..+..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence 456899999999999999999986 99999999998766555443
No 326
>PRK08303 short chain dehydrogenase; Provisional
Probab=88.83 E-value=3.9 Score=33.74 Aligned_cols=78 Identities=21% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH----------HHHHHHHHHHHhcCCCeEEEEcccccccccc-
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNLEWRV- 112 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~----------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~- 112 (216)
..++++|-.|++.|. ++..+++.|. +|+.++.+. +.++.+...+...+.++.++++|+.+...-.
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 467899999987663 3444555565 899888762 3444444444444445677888887632111
Q ss_pred ------cCCCcccEEEEcC
Q 027945 113 ------CSVGHVDTVVMNP 125 (216)
Q Consensus 113 ------~~~~~fD~v~~np 125 (216)
...++.|.+|.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 1224589999887
No 327
>PRK08589 short chain dehydrogenase; Validated
Probab=88.30 E-value=5.7 Score=31.89 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|++++.+ ...+.....+...+.++.++.+|+.+...-. ...+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 356788888876653 3444555565 89999998 4444444444444446778888887632110 1123
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.+|.|..+.
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 589999987654
No 328
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.89 E-value=6.2 Score=32.56 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=51.5
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..+++++-.|+++|. ++..+++.|. +|+.+..++...+.+...+... +.++.++.+|+.+...-. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467789988887663 3444555565 8999999887766665555432 226788889987633111 12
Q ss_pred CCcccEEEEcCCC
Q 027945 115 VGHVDTVVMNPPF 127 (216)
Q Consensus 115 ~~~fD~v~~npp~ 127 (216)
.++.|++|.|...
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2458999987654
No 329
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=87.49 E-value=1.9 Score=35.43 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 027945 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~ 93 (216)
.+.+|+-+|+|-..+.-.+++. ++++.++|+|+..+...+..+..
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 5679999999977777777774 55999999999988877766654
No 330
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.40 E-value=5.3 Score=31.95 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=52.5
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.+...+... +.++.++.+|+.+...-. ...+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 357788988887663 4455556666 8999999988777666555432 346788888887632111 1123
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.++.|.-.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 58999987643
No 331
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=87.24 E-value=4.8 Score=30.24 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHhh---cC-CcEEEEecCccHHHHHHHH
Q 027945 120 TVVMNPPFGTRKKGVDMDFLSMALKV---AS-QAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 120 ~v~~npp~~~~~~~~~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 166 (216)
.|++||||... ..+++++.+. .+ ..|+++-......++.+.+
T Consensus 64 ~vf~NPPYS~~-----~~~v~kaae~~~~~g~~~VmLlpa~tst~W~~~~a 109 (166)
T TIGR01712 64 AVWLNPPYSRP-----DIFVNKTAWFTEARQAAEVILIEADLSTVWWPEDI 109 (166)
T ss_pred eEEecCCCCcH-----HHHHHHHHHHHHhhCCeEEEEEecCCcchhHHhcC
Confidence 79999999754 6788877553 22 2444444444456654444
No 332
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.01 E-value=8.2 Score=30.18 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=49.3
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~ 116 (216)
+++++|-.|++ |.++..++ +.|. +|+.++.++..++.+...++..+.++.+++.|+.+.... ....+
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789988864 44444444 4455 899999998776666655555444677888887653211 00113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
++|.||.+...
T Consensus 82 ~id~vi~~ag~ 92 (253)
T PRK08217 82 QLNGLINNAGI 92 (253)
T ss_pred CCCEEEECCCc
Confidence 48999987654
No 333
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.95 E-value=11 Score=29.25 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=61.9
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHH----HHHHHHHHH--hcCC-CeEEEEcccccccccccCC
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDS----LELASENAA--DLEL-DIDFVQCDIRNLEWRVCSV 115 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~----~~~a~~~~~--~~~~-~~~~~~~d~~~~~~~~~~~ 115 (216)
...++.+|+|+-.|.|.++..++.. + ...|+++-.++.. .+..+.+.. .... +++.+-.+...+...+ .
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq-~- 122 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQ-K- 122 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCC-c-
Confidence 4568899999999999999988864 2 4477777654321 111111111 1111 4555555555554333 3
Q ss_pred CcccEEEEcCCCCCC-----CCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945 116 GHVDTVVMNPPFGTR-----KKGVDMDFLSMALKVAS-QAVYSLH 154 (216)
Q Consensus 116 ~~fD~v~~npp~~~~-----~~~~~~~~l~~~~~~~~-~~~~~~~ 154 (216)
.|++..+--||.. .......+-....+.++ +++|++.
T Consensus 123 --~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 123 --LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred --ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 6777776666554 22334456666677665 6777663
No 334
>PRK05876 short chain dehydrogenase; Provisional
Probab=86.88 E-value=5.3 Score=32.25 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=52.6
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|+++|. +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-. ...+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 356788888876553 3344445565 8999999987777666555554556778888987632110 1123
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|++|.|....
T Consensus 83 ~id~li~nAg~~ 94 (275)
T PRK05876 83 HVDVVFSNAGIV 94 (275)
T ss_pred CCCEEEECCCcC
Confidence 489999887653
No 335
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.78 E-value=5.4 Score=31.27 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC-
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG- 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~- 116 (216)
.++++|-.|++.|. ++..+++.|. +|+.++.++..++.+.+.+...+.++..+..|+.+...-. ..-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56789999998875 4555666666 8999999988887776666555545666777765532110 1113
Q ss_pred cccEEEEcCC
Q 027945 117 HVDTVVMNPP 126 (216)
Q Consensus 117 ~fD~v~~npp 126 (216)
+.|+++.|..
T Consensus 83 ~iD~li~nag 92 (227)
T PRK08862 83 APDVLVNNWT 92 (227)
T ss_pred CCCEEEECCc
Confidence 5999998863
No 336
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.62 E-value=3.8 Score=37.76 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=54.8
Q ss_pred CCEEEEecCCcchHHHHHHH-c-------C-----CCeEEEEeCCHHHHHH--------------HHHHHHh-----cCC
Q 027945 49 NKVVADFGCGCGTLGAAATL-L-------G-----ADQVIAIDIDSDSLEL--------------ASENAAD-----LEL 96 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~-~-------~-----~~~v~~~D~~~~~~~~--------------a~~~~~~-----~~~ 96 (216)
.-+|+|+|-|+|...+...+ . . .-+++++|..|-..+. ++..++. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 36999999999985544442 1 1 2388999976522211 1122211 121
Q ss_pred ----------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945 97 ----------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS 147 (216)
Q Consensus 97 ----------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~ 147 (216)
.++++.+|+.+...... .++|+++.|+.--..++.+ ..++++.+.+...
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~ 197 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAPAKNPDMWSPNLFNALARLAR 197 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCCccChhhccHHHHHHHHHHhC
Confidence 45678899987655431 2399999996322222222 3356666666654
No 337
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.59 E-value=6.9 Score=31.08 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.+...+... +.++.++..|+.+...-. ..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467789999976653 3444555566 8999999987777665555432 225677888887643210 12
Q ss_pred CCcccEEEEcCCC
Q 027945 115 VGHVDTVVMNPPF 127 (216)
Q Consensus 115 ~~~fD~v~~npp~ 127 (216)
.++.|.++.|...
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 2458999987654
No 338
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.57 E-value=16 Score=29.66 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH---------HHHHHHHHHHHhcCCCeEEEEccccccccc---
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRNLEWR--- 111 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~---------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--- 111 (216)
..++++|-.|++.|. +...+++.|. +|+.++.+. ..++.+...+...+.++.++..|+.+...-
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 356789999987763 3444555565 888888764 445544444444444677788888663211
Q ss_pred ----ccCCCcccEEEEcCCCC
Q 027945 112 ----VCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 112 ----~~~~~~fD~v~~npp~~ 128 (216)
....++.|.+|.|....
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 01224589999887653
No 339
>PRK06720 hypothetical protein; Provisional
Probab=86.52 E-value=9.4 Score=28.60 Aligned_cols=81 Identities=25% Similarity=0.273 Sum_probs=50.9
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~ 117 (216)
+++++|-.|.+.|. +...+++.|. +|+.+|.+....+.+...+...+.++.++..|+.+...- ....+.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56788888887653 3444555564 899999988776655555544344566778887653211 112245
Q ss_pred ccEEEEcCCCCC
Q 027945 118 VDTVVMNPPFGT 129 (216)
Q Consensus 118 fD~v~~npp~~~ 129 (216)
.|.++.|.....
T Consensus 94 iDilVnnAG~~~ 105 (169)
T PRK06720 94 IDMLFQNAGLYK 105 (169)
T ss_pred CCEEEECCCcCC
Confidence 899998866433
No 340
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=86.48 E-value=8 Score=30.50 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.....++..+.++.++..|+.+...-. ...+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 356788888865442 2333444455 8999999887776666555544445677788876532110 1123
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
++|.++.+...
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 48999988764
No 341
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.38 E-value=0.48 Score=38.16 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=33.6
Q ss_pred EEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945 100 FVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVY 151 (216)
Q Consensus 100 ~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (216)
+.+-|+.++.... . +|++..||||+.+..+..-..|..+.+..++...
T Consensus 190 v~qeDaN~LikkI-~---~DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~ 237 (330)
T COG3392 190 VYQEDANELIKKI-S---GDILYLDPPYNARQYSANYHLLETIARYEKPEPK 237 (330)
T ss_pred HHHhhHHHHHHhc-C---CCEEEeCCCccccccchHHHHHHHHHhcCCcccc
Confidence 3444554444443 3 8999999999999888877778877777654333
No 342
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.24 E-value=4.8 Score=36.73 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP 125 (216)
Q Consensus 57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np 125 (216)
||.|.++..+++. ...+++.+|.|++.++.+++. ...++.+|+.+...-. ..-.+.|.+++--
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 6677777666642 233899999999999988653 3678999988743221 1112488888743
No 343
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.17 E-value=6.7 Score=30.93 Aligned_cols=80 Identities=21% Similarity=0.171 Sum_probs=52.0
Q ss_pred CCCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|++. .++.. +++.|. +|+.++.+++.++.....++..+.++.++.+|+.+...-. ...
T Consensus 9 ~~~k~ilItGas~-~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 9 LAGQVALVTGSAR-GLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678899888654 44444 444465 8999999987776666666555556788888887632110 111
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|.++.+....
T Consensus 87 ~~id~vi~~ag~~ 99 (256)
T PRK06124 87 GRLDILVNNVGAR 99 (256)
T ss_pred CCCCEEEECCCCC
Confidence 3489999876653
No 344
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.09 E-value=1.2 Score=37.96 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-------CC---CeEEEE
Q 027945 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-------EL---DIDFVQ 102 (216)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-------~~---~~~~~~ 102 (216)
..-+.....++...++..-.|+|+|.|.....++.. ++..-+|+++....-+.|..+...+ |- .++.++
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence 333344444556667889999999999987777754 6778999998776666665554432 22 478888
Q ss_pred cccccccccccCCCcccEEEEcCC
Q 027945 103 CDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 103 ~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+++........-....++|++|-.
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEecc
Confidence 888764332210112788888654
No 345
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.96 E-value=2.7 Score=34.00 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC------CCeEEEEeCCH
Q 027945 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDS 81 (216)
Q Consensus 35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~------~~~v~~~D~~~ 81 (216)
.++..+...-...++..++|+|||.|.++..++..- ...++.+|-..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 344444443223466799999999999999999742 34788999754
No 346
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=85.92 E-value=9.8 Score=30.94 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc--------
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------- 112 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------- 112 (216)
..++++|--|.++|. ....+++.|+ +|+.++.+++.++.....+...+. ++..+.+|+.......
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 477899999998884 5677778776 999999999988887777665544 4788899987542211
Q ss_pred cCCCcccEEEEcCCCCCC
Q 027945 113 CSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 113 ~~~~~fD~v~~npp~~~~ 130 (216)
...++.|.++.|......
T Consensus 85 ~~~GkidiLvnnag~~~~ 102 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGL 102 (270)
T ss_pred HhCCCCCEEEEcCCcCCC
Confidence 124679999987766553
No 347
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.75 E-value=7.2 Score=30.71 Aligned_cols=80 Identities=24% Similarity=0.207 Sum_probs=51.8
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...+++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-. ...++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 56789999875442 2333444455 8999999987776666666555556888889987632110 11134
Q ss_pred ccEEEEcCCCC
Q 027945 118 VDTVVMNPPFG 128 (216)
Q Consensus 118 fD~v~~npp~~ 128 (216)
.|.++.+..+.
T Consensus 85 id~li~~ag~~ 95 (253)
T PRK06172 85 LDYAFNNAGIE 95 (253)
T ss_pred CCEEEECCCCC
Confidence 89999877653
No 348
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.62 E-value=14 Score=28.19 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=56.7
Q ss_pred CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL 96 (216)
Q Consensus 19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~ 96 (216)
.+|..+||=-.+..+..++...+.. ...+.+|.-+.|-+=.+-..... .+..+|+..|.|.. ....|
T Consensus 46 eDwQlsqfwy~~eta~~La~e~v~~--s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg- 114 (217)
T KOG3350|consen 46 EDWQLSQFWYSDETARKLAAERVEA--SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG- 114 (217)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHhh--cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc-
Confidence 3455666555556666666666654 22345666666655442222222 24558999999863 33333
Q ss_pred CeEEEEccccccc-ccccCCCcccEEEEcCCCCCC
Q 027945 97 DIDFVQCDIRNLE-WRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 97 ~~~~~~~d~~~~~-~~~~~~~~fD~v~~npp~~~~ 130 (216)
-+|+.=|..... .++.-.++||+|++||||-..
T Consensus 115 -~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~ 148 (217)
T KOG3350|consen 115 -TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSE 148 (217)
T ss_pred -ceeEEeccCCCCCCHHHHHhcccEEEeCCccccc
Confidence 356666654421 222122359999999999754
No 349
>PRK07035 short chain dehydrogenase; Provisional
Probab=85.60 E-value=7.3 Score=30.65 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=51.9
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++...+.....+...+.++.++..|+.+...-. ...+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356788888877663 3444555565 9999999887777666666554445677788876532110 1113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|+++.+..+
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 48999977654
No 350
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.45 E-value=9.8 Score=30.13 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=49.8
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc---cCCCcccE
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV---CSVGHVDT 120 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~---~~~~~fD~ 120 (216)
.++++|-.|++.|. +...+++.|. +|++++.++...+.+...+... +.++.++..|+.+...-. ...++.|.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 56788988975542 2333445566 9999999887776665555432 335778888876532110 01234999
Q ss_pred EEEcCCC
Q 027945 121 VVMNPPF 127 (216)
Q Consensus 121 v~~npp~ 127 (216)
++.+...
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 9987654
No 351
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.43 E-value=7.8 Score=30.68 Aligned_cols=80 Identities=24% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh--cCCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++...+.....+.. .+.++.++.+|+.+...-. ..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356789988876552 3344445565 899999998877777666654 2336778888887632111 11
Q ss_pred CCcccEEEEcCCC
Q 027945 115 VGHVDTVVMNPPF 127 (216)
Q Consensus 115 ~~~fD~v~~npp~ 127 (216)
.+..|.++.|...
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1348999987654
No 352
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=85.33 E-value=0.8 Score=36.52 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCEEEEecCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945 49 NKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
+.+||++.+|.|.+..++.. .++.-|-++|+++.+-+.-..|...+=+ .-.+.-..+.++..- . +|++.+.|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l--~---~~m~lMSP 77 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKL--Q---ANMLLMSP 77 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhhc--c---cceEeeCC
Confidence 45899999999998666654 4555788999999887776666322111 111222333333332 2 89999999
Q ss_pred CCCCC
Q 027945 126 PFGTR 130 (216)
Q Consensus 126 p~~~~ 130 (216)
|....
T Consensus 78 pCQPf 82 (338)
T KOG0919|consen 78 PCQPF 82 (338)
T ss_pred CCCch
Confidence 98664
No 353
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.26 E-value=4 Score=34.41 Aligned_cols=75 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHHHhcCC--CeEEEE
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ 102 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~ 102 (216)
...+||-+||| .|. ++..|++.|..+++.+|.|. .-.+.+++.++..+. +++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 56789999998 344 45666677888999999874 123445555554433 566666
Q ss_pred cccccccccccCCCcccEEEE
Q 027945 103 CDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 103 ~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++....... --..+|+|+.
T Consensus 103 ~~~~~~~~~~-~~~~~DlVid 122 (338)
T PRK12475 103 TDVTVEELEE-LVKEVDLIID 122 (338)
T ss_pred ccCCHHHHHH-HhcCCCEEEE
Confidence 6654211111 0113899885
No 354
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.14 E-value=6.8 Score=30.83 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=47.8
Q ss_pred CEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEc
Q 027945 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMN 124 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~n 124 (216)
+++|-.|++ |.++..++ +.|. +|++++.++...+.........+.++.++.+|+.+...-. ...++.|.|+.|
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 468888875 44444444 4454 8999998877666555555544446788888987642111 111249999987
Q ss_pred CCCC
Q 027945 125 PPFG 128 (216)
Q Consensus 125 pp~~ 128 (216)
..+.
T Consensus 81 ag~~ 84 (257)
T PRK09291 81 AGIG 84 (257)
T ss_pred CCcC
Confidence 5543
No 355
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.09 E-value=3.8 Score=35.09 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=32.7
Q ss_pred CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~ 92 (216)
...++.+||-|.+|-....-.+.. ++++|++||+||.-....+-.+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 345777888887664444444444 67799999999987777665544
No 356
>PRK06194 hypothetical protein; Provisional
Probab=84.99 E-value=7.9 Score=31.17 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=50.2
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|++ |.++.. +++.|. +|+.+|.++..++.....+...+.++.++.+|+.+...-. ...+
T Consensus 5 ~~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45788877755 444444 444565 8999999877766665555444446788899987632110 1123
Q ss_pred cccEEEEcCCCCC
Q 027945 117 HVDTVVMNPPFGT 129 (216)
Q Consensus 117 ~fD~v~~npp~~~ 129 (216)
+.|+|+.+.....
T Consensus 83 ~id~vi~~Ag~~~ 95 (287)
T PRK06194 83 AVHLLFNNAGVGA 95 (287)
T ss_pred CCCEEEECCCCCC
Confidence 4899998776543
No 357
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.91 E-value=8.2 Score=30.40 Aligned_cols=79 Identities=28% Similarity=0.271 Sum_probs=50.6
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...++++|. +|++++.++...+.+...+...+.++.++..|+.+...-. ...++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 56788888865542 3344445566 8999999987776666665544446788888886532110 01134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|.|+.+...
T Consensus 83 ~d~vi~~ag~ 92 (258)
T PRK07890 83 VDALVNNAFR 92 (258)
T ss_pred ccEEEECCcc
Confidence 8999987644
No 358
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=84.89 E-value=8.2 Score=30.61 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=47.4
Q ss_pred EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcccE
Q 027945 51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVDT 120 (216)
Q Consensus 51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD~ 120 (216)
++|-.|++.|. +...+++.|. +|+.++.++..++.+...+...+ ++.++.+|+.+...-. ...++.|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 57777866552 3344445565 89999999887777666655433 5677888876532110 11235999
Q ss_pred EEEcCCC
Q 027945 121 VVMNPPF 127 (216)
Q Consensus 121 v~~npp~ 127 (216)
+|.|...
T Consensus 80 li~naG~ 86 (259)
T PRK08340 80 LVWNAGN 86 (259)
T ss_pred EEECCCC
Confidence 9987654
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.87 E-value=9.4 Score=26.88 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE-cC
Q 027945 48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM-NP 125 (216)
Q Consensus 48 ~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~-np 125 (216)
...+|+|+|.|.=. .+..++++|+ .|+++|+++. +.. ..++++..|+++..... ....|+|++ -|
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~---~g~~~v~DDitnP~~~i--Y~~A~lIYSiRp 79 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP---EGLRFVVDDITNPNISI--YEGADLIYSIRP 79 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc---ccceEEEccCCCccHHH--hhCccceeecCC
Confidence 33489999988664 5677777786 8999999985 222 25789999998755432 123889986 44
Q ss_pred C
Q 027945 126 P 126 (216)
Q Consensus 126 p 126 (216)
|
T Consensus 80 p 80 (129)
T COG1255 80 P 80 (129)
T ss_pred C
Confidence 4
No 360
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.84 E-value=7.4 Score=30.68 Aligned_cols=77 Identities=26% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945 49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV 118 (216)
Q Consensus 49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f 118 (216)
++++|-.|++.|. +...+++.|. +|++++.++...+.+...+...+.++.++.+|+.+...-. ...++.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 3578888876652 3344445566 8999999887776666555444446778888876522110 011348
Q ss_pred cEEEEcCC
Q 027945 119 DTVVMNPP 126 (216)
Q Consensus 119 D~v~~npp 126 (216)
|.++.+..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99997753
No 361
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.74 E-value=20 Score=29.45 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-------~~ 114 (216)
..+++|+--||.+|. ++..++++|. +++-+-.....++...+.++..+. ++.++++|+.+...-. ..
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 377899999999994 6777888776 677777666677666555544433 4888999988743221 23
Q ss_pred CCcccEEEEcCCCCCC--CCCCCHHHHHHHHhh
Q 027945 115 VGHVDTVVMNPPFGTR--KKGVDMDFLSMALKV 145 (216)
Q Consensus 115 ~~~fD~v~~npp~~~~--~~~~~~~~l~~~~~~ 145 (216)
.+..|+.+.|--+... .......-++..++.
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdt 121 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDT 121 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhh
Confidence 3569999999887663 223344455555443
No 362
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=84.41 E-value=8.8 Score=30.53 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=54.9
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.+...++..+.++.++.+|+.+...-. ...+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 366789999987653 3444555565 7999999888777777666655556788889987632110 0113
Q ss_pred cccEEEEcCCCCC
Q 027945 117 HVDTVVMNPPFGT 129 (216)
Q Consensus 117 ~fD~v~~npp~~~ 129 (216)
+.|.++.+..+..
T Consensus 87 ~id~li~~ag~~~ 99 (265)
T PRK07097 87 VIDILVNNAGIIK 99 (265)
T ss_pred CCCEEEECCCCCC
Confidence 4899998776543
No 363
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.40 E-value=9 Score=32.01 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.....++..+.++.++.+|+.+...-. ...+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 456788888865542 2334445565 8999999988887777666655657788889987632111 1123
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|++|.|...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 58999987654
No 364
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.22 E-value=8.3 Score=31.49 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=50.3
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...+++.|. +|+.++.+++.++.....+...+.++.++.+|+.+...-. ...+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45788888875542 2333444555 8999999988777666665544446778888887632110 01134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|+++.+...
T Consensus 118 id~li~~AG~ 127 (293)
T PRK05866 118 VDILINNAGR 127 (293)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 365
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=84.18 E-value=4.4 Score=32.83 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945 81 SDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~ 128 (216)
...+......++ ++++.++|+.+....... -|+|++||||.
T Consensus 143 ~~~i~~~~~~l~----~v~i~~~Df~~~i~~~~~---~dfvYlDPPY~ 183 (266)
T TIGR00571 143 EKNLRHFAEKLQ----NTTFLCGSFEKILAMVDD---DSFVYCDPPYL 183 (266)
T ss_pred HHHHHHHHHHhc----CCEEEECCHHHHHhhcCC---CCEEEECCCCC
Confidence 344444444443 578899999887643323 67999999995
No 366
>PRK06197 short chain dehydrogenase; Provisional
Probab=84.17 E-value=13 Score=30.44 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=49.1
Q ss_pred CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------c
Q 027945 47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------C 113 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~ 113 (216)
..++++|-.|+. |.++..+ +++|. +|++++.++...+.+...+... +.++.++.+|+.+...-. .
T Consensus 14 ~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 14 QSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 466788888764 4444444 44565 8999998877666555544432 235788889987643111 1
Q ss_pred CCCcccEEEEcCCC
Q 027945 114 SVGHVDTVVMNPPF 127 (216)
Q Consensus 114 ~~~~fD~v~~npp~ 127 (216)
..++.|.+|.|...
T Consensus 92 ~~~~iD~li~nAg~ 105 (306)
T PRK06197 92 AYPRIDLLINNAGV 105 (306)
T ss_pred hCCCCCEEEECCcc
Confidence 12358999987654
No 367
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.98 E-value=6.7 Score=31.19 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=49.1
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHH-HHHHHHHHHhcCC-CeEEEEcccccccc-----cc-cCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNLEW-----RV-CSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~-~~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~~-~~~ 115 (216)
.++++|-.|++.| ++..++ +.|..+|+.++.++.. ++.+.+.+...+. ++.++.+|+.+... .. ...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 4568898888554 444444 4454599999988764 5555444544443 67888888865321 10 011
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
+..|+++.|....
T Consensus 86 g~id~li~~ag~~ 98 (253)
T PRK07904 86 GDVDVAIVAFGLL 98 (253)
T ss_pred CCCCEEEEeeecC
Confidence 3599999876553
No 368
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.84 E-value=8.6 Score=30.43 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=47.5
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. ++..+++.|. +|+.++.+.. +.....++..+.++.++.+|+.+...-. ...+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 357889999977663 3444555566 8888876532 2233333434446778888887632111 1124
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.|....
T Consensus 83 ~iD~lv~~ag~~ 94 (251)
T PRK12481 83 HIDILINNAGII 94 (251)
T ss_pred CCCEEEECCCcC
Confidence 589999887653
No 369
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.79 E-value=5.3 Score=33.67 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=45.3
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHHHhcCC--CeEEEE
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ 102 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~ 102 (216)
...+||-+||| .|. ++..|++.|..+++.+|-|. .-.+.++++++..+. +++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 55789999998 444 45666777888999999763 123444555554333 566666
Q ss_pred cccccccccccCCCcccEEEE
Q 027945 103 CDIRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 103 ~d~~~~~~~~~~~~~fD~v~~ 123 (216)
.++....... --..+|+|+.
T Consensus 103 ~~~~~~~~~~-~~~~~DlVid 122 (339)
T PRK07688 103 QDVTAEELEE-LVTGVDLIID 122 (339)
T ss_pred ccCCHHHHHH-HHcCCCEEEE
Confidence 6654321111 0012899885
No 370
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.73 E-value=3.4 Score=36.86 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945 47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 47 ~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~ 90 (216)
.++.+|+-+|||. |..++..++. |+ +|+++|.+++..+.++..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence 4688999999995 5566666754 66 899999999999988873
No 371
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.69 E-value=11 Score=29.66 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccc---------c
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR---------V 112 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---------~ 112 (216)
.+++++|-.|+ +|.++..++ +.|. +|++++.++...+.....+...+. ++.++..|+...... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 46778998885 555555444 4455 999999998777666555554432 566777776422110 0
Q ss_pred cCCCcccEEEEcCC
Q 027945 113 CSVGHVDTVVMNPP 126 (216)
Q Consensus 113 ~~~~~fD~v~~npp 126 (216)
...++.|.|+.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 01134899997653
No 372
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.66 E-value=10 Score=29.85 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...+++.|. +|+.++.++...+.+...++..+.++.++.+|+.+...-. ...++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 46788888776542 3344445565 8999999888777776666555556778888887632110 11134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|.++.|...
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8999987754
No 373
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.59 E-value=12 Score=29.33 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=48.3
Q ss_pred CEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc-------ccccCCCcc
Q 027945 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE-------WRVCSVGHV 118 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~~~f 118 (216)
+++|=.| |+|.++..+++ .|. +|++++.++...+.....+...+.++.++.+|+.+.. .-....+..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4567666 55666665554 355 8999999887776666555544446888899987743 111111238
Q ss_pred cEEEEcCCC
Q 027945 119 DTVVMNPPF 127 (216)
Q Consensus 119 D~v~~npp~ 127 (216)
|.|+.+...
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999986644
No 374
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.57 E-value=3.3 Score=35.29 Aligned_cols=45 Identities=40% Similarity=0.603 Sum_probs=36.3
Q ss_pred CCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945 46 DVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 46 ~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~ 90 (216)
..++.+||..|||. |..++.+++. |..+++++|.+++..+.++..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 45678999999887 7788888865 554699999999988888775
No 375
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=83.54 E-value=1.8 Score=34.01 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHH
Q 027945 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~ 92 (216)
-..-|+..++..+.+.++.+.+|+--|.|.-+..+.+ ..-.++++.|.||.+.+.|+....
T Consensus 27 HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 27 HVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 4455777777777888999999999999998877775 455689999999999999988764
No 376
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.38 E-value=5.9 Score=29.91 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=23.0
Q ss_pred EEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH
Q 027945 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~ 81 (216)
+|+-+||| .|. ....+++.|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47788888 455 45666677888999999774
No 377
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.22 E-value=11 Score=30.71 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=49.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.++.++..++.....+.. +..+..+.+|+.+...-. ...+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467789988866552 3444445565 899999998877665554432 224555567876532110 1113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|++|.|....
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 599999987653
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.80 E-value=6.8 Score=35.91 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=42.2
Q ss_pred CEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE
Q 027945 50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM 123 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~ 123 (216)
..|+=+||| .++..+++ .+. +++.+|.|++.++.+++. ...++.+|..+...-. ..-.+.|.+++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 456665554 45444443 344 899999999999988663 3678999988753221 11124888886
No 379
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.62 E-value=5.4 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
...+||=+||| .|. ....+++.|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56789999998 354 4566667788899999977
No 380
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.30 E-value=11 Score=33.96 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=40.9
Q ss_pred CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEc
Q 027945 57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMN 124 (216)
Q Consensus 57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~n 124 (216)
||.|.++..+++. ...+++.+|.|++.++.+++. ....+.+|..+...-. ..-++.|.++..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 5666666666642 234899999999988888742 4788999998743211 111248977764
No 381
>PRK06196 oxidoreductase; Provisional
Probab=81.87 E-value=25 Score=28.86 Aligned_cols=76 Identities=25% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|++ |.++..++ +.|. +|++++.++...+.+...+. .+.++.+|+.+...-. ...
T Consensus 24 l~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 24 LSGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 356789988865 44554444 4455 89999998776655544432 3677888887643110 112
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|++|.|....
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 3589999887643
No 382
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.81 E-value=6.4 Score=32.82 Aligned_cols=45 Identities=40% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 45 ~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
...++.+||-.||| .|..++.+++. |..+|+++|.+++.++.+++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 34467889988875 33445555554 66689999999998888865
No 383
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=81.73 E-value=13 Score=29.84 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=51.0
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.+++++|-.|++.|. +...+++.|. +|+.++.++...+.....+...+.++.++.+|+.+...-. ...+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356788888876553 3344445565 8999999887766665555544446788889987632111 0113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.++.+...
T Consensus 87 ~id~li~~ag~ 97 (278)
T PRK08277 87 PCDILINGAGG 97 (278)
T ss_pred CCCEEEECCCC
Confidence 48999987653
No 384
>PRK07814 short chain dehydrogenase; Provisional
Probab=81.70 E-value=13 Score=29.60 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.+++++|-.|+ +|.++..++ ++|. +|++++.++...+.....+...+.++.++.+|+.+...-. ...
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35678998886 455554444 4566 9999999987776665555544446778888877643211 011
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.|+.+.-.
T Consensus 86 ~~id~vi~~Ag~ 97 (263)
T PRK07814 86 GRLDIVVNNVGG 97 (263)
T ss_pred CCCCEEEECCCC
Confidence 348999987654
No 385
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.64 E-value=13 Score=29.32 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|+ +|.++..+++ .|. +|++++.++...+.....++..+.++.++.+|+.+...-. ...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46788998885 5555555553 455 8999999988777666666554546778888887632110 112
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 3489999877654
No 386
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.52 E-value=13 Score=29.38 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|=.|++.|. +...+++.|. +|+.++.+ ...+.+...+...+.++.++.+|+.+...-. ...+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467889999987653 3344455565 88888887 3444444444443446788888887633211 1113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
..|.++.+....
T Consensus 91 ~id~li~~ag~~ 102 (258)
T PRK06935 91 KIDILVNNAGTI 102 (258)
T ss_pred CCCEEEECCCCC
Confidence 489999877653
No 387
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.42 E-value=5 Score=34.81 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
|.|+++....++...- ...++++|+-+|+|. |......++. |+ +|+.+|.++...+.|+.
T Consensus 182 ~g~g~s~~~~i~r~t~---~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 182 YGCRESLIDGIKRATD---VMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred chhchhhHHHHHHhcC---CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 4566666655555431 235789999999995 4444444443 55 89999999988777765
No 388
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.34 E-value=14 Score=28.92 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=50.1
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
+++++|-.|++ |.++..++ +.|. +|++++.++...+.+...+...+.++.++.+|+.+...-. ...+
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45678888864 44544444 4454 8999999887777666666554446888899987532110 0112
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|+++.+...
T Consensus 80 ~~d~vi~~ag~ 90 (250)
T TIGR03206 80 PVDVLVNNAGW 90 (250)
T ss_pred CCCEEEECCCC
Confidence 48999987765
No 389
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.34 E-value=2.2 Score=34.81 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 82 DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
+.+..+.+.++ ++++.++|+.+......+ .=|+|++||||...
T Consensus 145 ~~L~~~a~~l~----~~~i~~~df~~v~~~a~~--~~dfvY~DPPY~~~ 187 (274)
T COG0338 145 ENLKLFAEKLK----NATIENGDFEEVLADADS--GDDFVYCDPPYLPL 187 (274)
T ss_pred HHHHHHHHHHh----cCeEEcCCHHHHHhhccC--CCcEEEeCCCCCcc
Confidence 33444544444 489999999987663223 13899999999885
No 390
>PRK05855 short chain dehydrogenase; Validated
Probab=81.25 E-value=13 Score=33.10 Aligned_cols=79 Identities=27% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.+.++|-+|+ +|.++.. +++.|. +|+.++.++...+.....++..+.++.++.+|+.+...-. ...+
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4567887776 4444444 444455 7999999988777766666655557888899987743211 1223
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.|.-..
T Consensus 392 ~id~lv~~Ag~~ 403 (582)
T PRK05855 392 VPDIVVNNAGIG 403 (582)
T ss_pred CCcEEEECCccC
Confidence 589999886553
No 391
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.17 E-value=6.2 Score=29.25 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=49.0
Q ss_pred CcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC
Q 027945 58 GCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG 133 (216)
Q Consensus 58 G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~ 133 (216)
|.|.++..++++ |. +|++.|.+++..+..... ..+ ...+..+... . .|+|++--| +..
T Consensus 8 GlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~------g~~-~~~s~~e~~~---~---~dvvi~~v~----~~~ 69 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA------GAE-VADSPAEAAE---Q---ADVVILCVP----DDD 69 (163)
T ss_dssp --SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT------TEE-EESSHHHHHH---H---BSEEEE-SS----SHH
T ss_pred chHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh------hhh-hhhhhhhHhh---c---ccceEeecc----cch
Confidence 446666666643 55 899999999777665544 122 2233333322 2 698887555 112
Q ss_pred CCHHHHHH--HHhhc-CCcEEEEecCccHHHHHHHH
Q 027945 134 VDMDFLSM--ALKVA-SQAVYSLHKTSTREHVKKAA 166 (216)
Q Consensus 134 ~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (216)
.....+.. ++... ++.+++-+.+...+...+..
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~ 105 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELA 105 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHH
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhh
Confidence 22334443 44433 46888888887777666666
No 392
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.04 E-value=15 Score=28.54 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|+ +|.++..++ ++|. +|++++-++.........+...+.++.++.+|+.+...-. ...+
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4568887775 455555444 4455 8999999877666555555544446888889987632110 0112
Q ss_pred cccEEEEcCCCCC
Q 027945 117 HVDTVVMNPPFGT 129 (216)
Q Consensus 117 ~fD~v~~npp~~~ 129 (216)
++|.|+.+.....
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 4899998875543
No 393
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.99 E-value=15 Score=29.06 Aligned_cols=79 Identities=25% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|+ +|.++..+++ .|. +|+.++.++...+.....+...+.++.++.+|+.+...-. ...
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46678998884 5566655554 455 8999999887777776666554446778899987632110 011
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 248999987654
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=80.78 E-value=14 Score=29.07 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=50.8
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|+++|. +...++++|. +++.++.+....+.+...++..+.++.++..|+.+...-. ...++
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56899999966553 2334445565 8889998877776665555544446777888887643110 11134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
+|.++.+..+
T Consensus 89 ~d~li~~ag~ 98 (255)
T PRK06113 89 VDILVNNAGG 98 (255)
T ss_pred CCEEEECCCC
Confidence 8999987664
No 395
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.61 E-value=15 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=26.5
Q ss_pred CCCCCEEEEecCC-cchH-HHHHHHcCCCeEEEEeCC
Q 027945 46 DVSNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID 80 (216)
Q Consensus 46 ~~~~~~vLD~g~G-~G~~-~~~l~~~~~~~v~~~D~~ 80 (216)
...+.+|+-+||| .|.. ...|++.|..+++.+|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3467789999998 5654 555667788899999966
No 396
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.33 E-value=15 Score=29.09 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=47.5
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
+++++|-.|++.|. +...+++.|. +|+.++.++..++...... +.++.++++|+.+...-. ...++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAFGK 80 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 56789999976553 3344445565 8999999887665554432 225677888876632111 11235
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|.++.|..+
T Consensus 81 id~li~~ag~ 90 (263)
T PRK06200 81 LDCFVGNAGI 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999988765
No 397
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.23 E-value=6.9 Score=32.97 Aligned_cols=46 Identities=35% Similarity=0.479 Sum_probs=34.1
Q ss_pred CCCCCCEEEEecCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~-G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~ 90 (216)
...++.++.-+|||. |...+.-++ .++.+++++|+++.-++.|++-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 455777888888873 444444443 3788999999999999998875
No 398
>PRK08643 acetoin reductase; Validated
Probab=80.09 E-value=15 Score=28.93 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 49 NKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
++++|-.|+..| ++.. +++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-. ...++
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 356777775544 4444 444455 8999999887777666666554446778889987643110 11134
Q ss_pred ccEEEEcCCCC
Q 027945 118 VDTVVMNPPFG 128 (216)
Q Consensus 118 fD~v~~npp~~ 128 (216)
.|.++.+..+.
T Consensus 80 id~vi~~ag~~ 90 (256)
T PRK08643 80 LNVVVNNAGVA 90 (256)
T ss_pred CCEEEECCCCC
Confidence 89999876543
No 399
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.84 E-value=16 Score=28.66 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|+ +|.++..++ +.|. +|++++.+++.++.....++..+.++.++.+|+.+...-. ...
T Consensus 7 ~~~k~ilItGa-sg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGA-SSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 45678888884 444444444 4455 8999999988777666665544446778888876532110 011
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.++.+...
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 348999987654
No 400
>PRK09242 tropinone reductase; Provisional
Probab=79.63 E-value=16 Score=28.85 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=51.8
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEccccccccc-------ccC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR-------VCS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~-------~~~ 114 (216)
..++++|-.|++.|. +...+++.|. +|+.++.+++..+.....+... +.++.++.+|+.+...- ...
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356788988885542 3344444565 8999999887777666665543 33677888898763210 011
Q ss_pred CCcccEEEEcCCCC
Q 027945 115 VGHVDTVVMNPPFG 128 (216)
Q Consensus 115 ~~~fD~v~~npp~~ 128 (216)
.++.|.++.+..+.
T Consensus 86 ~g~id~li~~ag~~ 99 (257)
T PRK09242 86 WDGLHILVNNAGGN 99 (257)
T ss_pred cCCCCEEEECCCCC
Confidence 23589999877653
No 401
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.45 E-value=20 Score=27.95 Aligned_cols=78 Identities=19% Similarity=0.106 Sum_probs=49.4
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
+++++|=.|+ +|.++..++ +.|. +|++++.++...+.....++..+.++.++.+|+.+...-. ...+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5678887775 555555554 3455 8999998887766665555444446888999987633110 0113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.|+.+.-.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 48999976544
No 402
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.36 E-value=9.3 Score=30.36 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=25.4
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
...+|+-+||| .|. ....|++.|..+++.+|.|
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 55689999997 565 4556667788899999965
No 403
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.34 E-value=16 Score=28.77 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=50.1
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|+. |.++.. +++.|. +|++++.++...+.+...+...+.++.++.+|+.+...-. ...+
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788877664 444444 444565 8999999987776666665554546778899987643211 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|+|+.+....
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 489999876543
No 404
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.33 E-value=14 Score=33.54 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhc-----C----CCeEEEEcccccccccccC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIRNLEWRVCS 114 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~-----~----~~~~~~~~d~~~~~~~~~~ 114 (216)
.+++||-.|+ +|.++..+++ .|. +|++++.+...++.....+... + .++.++.+|+.+...-...
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 5667777775 4666655553 354 8999999887765554433221 1 1478899999874321111
Q ss_pred CCcccEEEEcCC
Q 027945 115 VGHVDTVVMNPP 126 (216)
Q Consensus 115 ~~~fD~v~~npp 126 (216)
-+..|+||++..
T Consensus 157 LggiDiVVn~AG 168 (576)
T PLN03209 157 LGNASVVICCIG 168 (576)
T ss_pred hcCCCEEEEccc
Confidence 123899998754
No 405
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.33 E-value=18 Score=28.21 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=50.1
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..+++|-.|+ +|.++..++ +.|. +|++++.++...+.....+...+.++.++.+|+.+...-. ...+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3467888885 555555555 3455 8999999887666555554443346788899987643110 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.+....
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 489999877654
No 406
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.20 E-value=13 Score=30.65 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=41.9
Q ss_pred EEEEecCC-cch-HHHHHHHcCCCeEEEEeCCHH-------------------HHHHHHHHHHhcCC--CeEEEEccccc
Q 027945 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCDIRN 107 (216)
Q Consensus 51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (216)
+||-+||| .|. +...|+..|..+++.+|.|.- -.+.|.+++...+. +++.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 46777776 443 344455568889999995521 23445555544332 67777777765
Q ss_pred ccccccCCCcccEEEE
Q 027945 108 LEWRVCSVGHVDTVVM 123 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~ 123 (216)
.... ...+||+|+.
T Consensus 81 ~~~~--f~~~fdvVi~ 94 (291)
T cd01488 81 KDEE--FYRQFNIIIC 94 (291)
T ss_pred hhHH--HhcCCCEEEE
Confidence 4322 1123999996
No 407
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.18 E-value=28 Score=27.13 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
..++++|=.|++.|. +...+++.|. +|++++.++. +.+...+...+.++.++..|+.+...-. ...+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 357789999986542 3344444565 8999987642 2333333333445788888887632111 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.+....
T Consensus 80 ~~d~li~~ag~~ 91 (248)
T TIGR01832 80 HIDILVNNAGII 91 (248)
T ss_pred CCCEEEECCCCC
Confidence 489999887654
No 408
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.17 E-value=26 Score=30.44 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-ccCCCcccEEEE
Q 027945 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-VCSVGHVDTVVM 123 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~fD~v~~ 123 (216)
...+++=+|+ |.++..+++. ...+|+.+|.+++.++.++.... .+.++.+|..+...- ...-.++|.|++
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~----~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP----NTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC----CCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4567887777 5555555532 23389999999998887766531 467889998753211 111124898887
Q ss_pred cCC
Q 027945 124 NPP 126 (216)
Q Consensus 124 npp 126 (216)
-.+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 544
No 409
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.05 E-value=5.2 Score=32.52 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=53.4
Q ss_pred CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
.++....|+|+-.|.-+-.+.+++- .|+++|--+- .+. +-..| .++.+..|-+.+.+.... .|..+||..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m-a~s----L~dtg-~v~h~r~DGfk~~P~r~~---idWmVCDmV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM-AQS----LMDTG-QVTHLREDGFKFRPTRSN---IDWMVCDMV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchh-hhh----hhccc-ceeeeeccCcccccCCCC---CceEEeehh
Confidence 4678999999999999999999876 8999998652 221 21212 588888998887764434 999999876
No 410
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.60 E-value=17 Score=28.81 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=46.3
Q ss_pred CCCCEEEEecCCcc-hHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCG-TLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G-~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..++++|-.|+++| .++..++ +.|. +|+.++.+....+.++...+..+ ...++.+|+.+...-. ..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHHH
Confidence 46789999998763 4544444 4465 89888987654333333222222 2346777876532110 12
Q ss_pred CCcccEEEEcCCCC
Q 027945 115 VGHVDTVVMNPPFG 128 (216)
Q Consensus 115 ~~~fD~v~~npp~~ 128 (216)
.++.|+++.|..+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 24589999887553
No 411
>PLN02780 ketoreductase/ oxidoreductase
Probab=78.50 E-value=12 Score=31.11 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.0
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEccccc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRN 107 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~ 107 (216)
.++++|-.|+++|. ++..++++|. +|+.++.+++.++.....++.. +.++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 46789999977663 4555666666 8999999998887776666543 2256666777653
No 412
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.28 E-value=8.1 Score=30.45 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=44.2
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCC--CeEEEEcc
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (216)
...+|+=+||| .|. +...+++.|..+++.+|.+. .-.+.+.++++..+. +++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 55689999998 454 46666677888999997442 234555666655433 45555555
Q ss_pred ccccc--ccccCCCcccEEEE
Q 027945 105 IRNLE--WRVCSVGHVDTVVM 123 (216)
Q Consensus 105 ~~~~~--~~~~~~~~fD~v~~ 123 (216)
+.... ..... +|+|+.
T Consensus 100 i~~~~~~~~~~~---~DvVi~ 117 (228)
T cd00757 100 LDAENAEELIAG---YDLVLD 117 (228)
T ss_pred eCHHHHHHHHhC---CCEEEE
Confidence 42211 11123 899995
No 413
>PRK05599 hypothetical protein; Provisional
Probab=78.22 E-value=18 Score=28.51 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=48.2
Q ss_pred EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-------cCCCccc
Q 027945 51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-------CSVGHVD 119 (216)
Q Consensus 51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-------~~~~~fD 119 (216)
++|-.|++.|. ++..++ .| .+|+.++.++..++.....++..+. .+.++.+|+.+...-. ...++.|
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 56777776653 233343 25 5899999988887777666665443 4677888877632111 1224599
Q ss_pred EEEEcCCCC
Q 027945 120 TVVMNPPFG 128 (216)
Q Consensus 120 ~v~~npp~~ 128 (216)
+++.|....
T Consensus 80 ~lv~nag~~ 88 (246)
T PRK05599 80 LAVVAFGIL 88 (246)
T ss_pred EEEEecCcC
Confidence 999887653
No 414
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=78.22 E-value=35 Score=29.45 Aligned_cols=82 Identities=22% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCCEEEEecCCcchH-----HHHHHHcCCCeEEEEeCCHHHH------------HHHHHHHHhcCCCeEEEEcccccccc
Q 027945 48 SNKVVADFGCGCGTL-----GAAATLLGADQVIAIDIDSDSL------------ELASENAADLELDIDFVQCDIRNLEW 110 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~-----~~~l~~~~~~~v~~~D~~~~~~------------~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (216)
.++++|-+|+.+|.- +..+ +.|. ++++++...... +.....++..|..+..+.+|+.....
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 457999999988752 2234 4455 788887543211 12333344445556678899876321
Q ss_pred cc-------cCCCcccEEEEcCCCCCCC
Q 027945 111 RV-------CSVGHVDTVVMNPPFGTRK 131 (216)
Q Consensus 111 ~~-------~~~~~fD~v~~npp~~~~~ 131 (216)
.. ...++.|++|.+..|....
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~ 145 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRT 145 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCC
Confidence 11 1225699999988877553
No 415
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.07 E-value=20 Score=27.95 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|=.|++.|. +...++++|. +|++++.++...+.....+.. +.++.++.+|+.+...-. ...++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45688888765432 3334444565 799999998776666555543 335788889887633211 11134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
+|.|+.+..+
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999987765
No 416
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=78.07 E-value=4.1 Score=34.96 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=19.5
Q ss_pred EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945 99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130 (216)
Q Consensus 99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~ 130 (216)
..+.+.++.-.++.++ .+++.+--..|+.
T Consensus 147 ~gvpGSFY~RLfP~~S---lh~~~Ss~slHWL 175 (386)
T PLN02668 147 AGVPGSFYRRLFPARS---IDVFHSAFSLHWL 175 (386)
T ss_pred EecCccccccccCCCc---eEEEEeeccceec
Confidence 4455667766666556 8888886666665
No 417
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.89 E-value=28 Score=27.13 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|=.| |+|.++..++ +.|. +|++++.++...+.....+...+.+..++..|+.+...-. ...+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 557888777 4555555555 3454 8999999876665555544433334667788887643210 0112
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.||.+..+
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 48999987765
No 418
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.57 E-value=4.4 Score=27.35 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=33.6
Q ss_pred ecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 55 FGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 55 ~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+.||+|.-+-.++ +.+++.++.+|..+++...+..+....... +|+|++-|=
T Consensus 4 ~~Cg~G~sTS~~~-----------------~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~---~Diil~~Pq 55 (96)
T cd05564 4 LVCSAGMSTSILV-----------------KKMKKAAEKRGIDAEIEAVPESELEEYIDD---ADVVLLGPQ 55 (96)
T ss_pred EEcCCCchHHHHH-----------------HHHHHHHHHCCCceEEEEecHHHHHHhcCC---CCEEEEChh
Confidence 5678877444333 334566667777788888888776433323 999998653
No 419
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.27 E-value=26 Score=34.20 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=49.6
Q ss_pred CCCEEEEecCCc-chHH-HHHHHcCCC-------------eEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc
Q 027945 48 SNKVVADFGCGC-GTLG-AAATLLGAD-------------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV 112 (216)
Q Consensus 48 ~~~~vLD~g~G~-G~~~-~~l~~~~~~-------------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (216)
..++|+-+|||. |... ..+++.+.. .|+..|.++...+.+..... +++.+..|+.+...-.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~----~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE----NAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC----CCceEEeecCCHHHHH
Confidence 356899999983 5543 334443322 38889999876665544432 3455666654432111
Q ss_pred cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945 113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS 147 (216)
Q Consensus 113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~ 147 (216)
..-.+.|+|++-.|+.. .....+.+++.+.
T Consensus 644 ~~v~~~DaVIsalP~~~-----H~~VAkaAieaGk 673 (1042)
T PLN02819 644 KYVSQVDVVISLLPASC-----HAVVAKACIELKK 673 (1042)
T ss_pred HhhcCCCEEEECCCchh-----hHHHHHHHHHcCC
Confidence 10012899997666532 2344444444444
No 420
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.22 E-value=19 Score=28.65 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=47.5
Q ss_pred EEEEecCCcchHHH----HHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCccc
Q 027945 51 VVADFGCGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVD 119 (216)
Q Consensus 51 ~vLD~g~G~G~~~~----~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD 119 (216)
++|-.|+.. .++. .+++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-. ...+++|
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 567677544 4444 4444455 8999999887777666666555556778888887632110 0113489
Q ss_pred EEEEcCCCC
Q 027945 120 TVVMNPPFG 128 (216)
Q Consensus 120 ~v~~npp~~ 128 (216)
.+|.+....
T Consensus 80 ~lI~~ag~~ 88 (270)
T PRK05650 80 VIVNNAGVA 88 (270)
T ss_pred EEEECCCCC
Confidence 999876543
No 421
>PRK07576 short chain dehydrogenase; Provisional
Probab=76.93 E-value=23 Score=28.23 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=47.2
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-----c--cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-----V--CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-----~--~~~~ 116 (216)
+++++|-.|+ +|.++..++ ..|. +|++++.++..++.....+...+.++.++..|+.+...- . ...+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888885 444444443 4455 899999987766655544444343567788888652211 0 0113
Q ss_pred cccEEEEcCC
Q 027945 117 HVDTVVMNPP 126 (216)
Q Consensus 117 ~fD~v~~npp 126 (216)
+.|.++.+..
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 4899998763
No 422
>PRK10904 DNA adenine methylase; Provisional
Probab=76.92 E-value=5.3 Score=32.48 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=20.9
Q ss_pred CeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945 97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128 (216)
Q Consensus 97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~ 128 (216)
++++.+.|+.+....... =|+|++||||.
T Consensus 157 ~v~i~~~Df~~~i~~~~~---~~fvYlDPPY~ 185 (271)
T PRK10904 157 NAFFYCESYADSMARADK---GSVVYCDPPYA 185 (271)
T ss_pred CCEEEECCHHHHHhhcCC---CcEEEECCCCC
Confidence 467778888776543223 68999999995
No 423
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=76.78 E-value=41 Score=27.70 Aligned_cols=79 Identities=20% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945 49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV 118 (216)
Q Consensus 49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f 118 (216)
++++|-.|++.|. +...+++.|..+|+.+..+....+.+...+...+.++.++.+|+.+...-. ...++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 82 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL 82 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 4578878876653 334444556358999998877666555544433335677888876532110 112359
Q ss_pred cEEEEcCCC
Q 027945 119 DTVVMNPPF 127 (216)
Q Consensus 119 D~v~~npp~ 127 (216)
|++|.|...
T Consensus 83 D~lI~nAG~ 91 (314)
T TIGR01289 83 DALVCNAAV 91 (314)
T ss_pred CEEEECCCc
Confidence 999998765
No 424
>PRK05717 oxidoreductase; Validated
Probab=76.72 E-value=22 Score=28.05 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCC
Q 027945 47 VSNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~ 115 (216)
..++++|-.|++ |.++.. +++.|. +|+.+|.++...+...... +.++.++.+|+.+...- ....
T Consensus 8 ~~~k~vlItG~s-g~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 8 HNGRVALVTGAA-RGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred cCCCEEEEeCCc-chHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 466788877765 444444 444455 8999998865443332222 23577889998763211 0112
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
+++|.+|.+..+.
T Consensus 83 g~id~li~~ag~~ 95 (255)
T PRK05717 83 GRLDALVCNAAIA 95 (255)
T ss_pred CCCCEEEECCCcc
Confidence 3489999877654
No 425
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=76.68 E-value=11 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCC
Q 027945 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDID 80 (216)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~ 80 (216)
+...|+++.......+| -|||+|-|.|..--.+... +..+++..|-.
T Consensus 14 QR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 45667777776555554 6999999999988888864 56699999964
No 426
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.67 E-value=18 Score=31.40 Aligned_cols=73 Identities=32% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCCEEEEecCCcchH--HHHHHHcCCCeEEEEeCCH-HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945 48 SNKVVADFGCGCGTL--GAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n 124 (216)
.+++++=+|+|.... +..+++.|. +|+++|.+. ..++.....+...+ ++++..|..+.... . +|+|+.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~--~---~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG--IELVLGEYPEEFLE--G---VDLVVVS 75 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CEEEeCCcchhHhh--c---CCEEEEC
Confidence 567899999887443 233334465 899999975 33333223343333 55666666542221 3 9999987
Q ss_pred CCCC
Q 027945 125 PPFG 128 (216)
Q Consensus 125 pp~~ 128 (216)
+-..
T Consensus 76 ~g~~ 79 (450)
T PRK14106 76 PGVP 79 (450)
T ss_pred CCCC
Confidence 7643
No 427
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.65 E-value=19 Score=27.85 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|+ +|.++..+++ .|. +|++++.++...+.....+... .++.++.+|+.+...-. ...+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578888885 6666655553 455 7999999887766655554432 35778888876532110 0112
Q ss_pred cccEEEEcCC
Q 027945 117 HVDTVVMNPP 126 (216)
Q Consensus 117 ~fD~v~~npp 126 (216)
..|.|+.+..
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 4899997643
No 428
>PRK08328 hypothetical protein; Provisional
Probab=76.64 E-value=13 Score=29.48 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
.+.+|+=+||| .|. ....+++.|..+++.+|.|
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 55689999999 454 4666667798899999954
No 429
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.63 E-value=21 Score=28.24 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=49.1
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc------cCCCcc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV------CSVGHV 118 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~f 118 (216)
+++++|=.|++.|. +...+++.|. +|++++.++..++.....+. .+.++.++.+|+.+...-. ...++.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 45678888866542 3344445565 89999999877766655442 2336778888887643110 011348
Q ss_pred cEEEEcCCCC
Q 027945 119 DTVVMNPPFG 128 (216)
Q Consensus 119 D~v~~npp~~ 128 (216)
|.++.+..+.
T Consensus 82 d~lv~~ag~~ 91 (263)
T PRK09072 82 NVLINNAGVN 91 (263)
T ss_pred CEEEECCCCC
Confidence 9999876553
No 430
>PRK07024 short chain dehydrogenase; Provisional
Probab=76.63 E-value=15 Score=29.05 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=46.4
Q ss_pred CEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945 50 KVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV 118 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f 118 (216)
+++|-.|++ |.++.. +++.|. +|+.++.+++.++.....+...+ ++.++.+|+.+...-. ...++.
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 467777764 444444 444455 89999998877665554443333 5788889987632110 112348
Q ss_pred cEEEEcCCC
Q 027945 119 DTVVMNPPF 127 (216)
Q Consensus 119 D~v~~npp~ 127 (216)
|+++.|...
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999987654
No 431
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.52 E-value=21 Score=28.18 Aligned_cols=76 Identities=25% Similarity=0.254 Sum_probs=47.1
Q ss_pred CEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV 118 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f 118 (216)
+++|-.|+ +|.++..++ +.|. +|++++.++...+.....+...+.++.++.+|+.+...-. ...++.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46776774 445555444 4455 8999999887766665555554546778888887643110 011248
Q ss_pred cEEEEcCCC
Q 027945 119 DTVVMNPPF 127 (216)
Q Consensus 119 D~v~~npp~ 127 (216)
|.|+.+.-.
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999977543
No 432
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.33 E-value=21 Score=29.31 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCeEEEEcccccccccc------cCCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWRV------CSVG 116 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~ 116 (216)
..++++|-.|++.|. +...+++.|. +|+.+|.+ ....+.....+...+.++.++.+|+.+...-. ...+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 467889988887663 3455556566 89988874 33444444444444446778888887631110 0023
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.+|.|....
T Consensus 89 ~iD~li~nAG~~ 100 (306)
T PRK07792 89 GLDIVVNNAGIT 100 (306)
T ss_pred CCCEEEECCCCC
Confidence 589999876543
No 433
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=76.29 E-value=16 Score=32.72 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCCEEEEecCCcc-hHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 47 VSNKVVADFGCGCG-TLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 47 ~~~~~vLD~g~G~G-~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
.++.+++-+|||.= .....+++. |+ .|+++|.++..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 35689999999854 455555543 55 79999999998777775
No 434
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.28 E-value=19 Score=28.11 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=46.3
Q ss_pred CEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc----cCCCcccE
Q 027945 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV----CSVGHVDT 120 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~----~~~~~fD~ 120 (216)
++++-.|+ +|.++..++ +.|. +|++++.++...+.....+... +.++.++.+|+.+...-. ....++|.
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 46777775 455555444 4455 8999999887665554444332 226888999987643211 01113799
Q ss_pred EEEcCCC
Q 027945 121 VVMNPPF 127 (216)
Q Consensus 121 v~~npp~ 127 (216)
++.+..+
T Consensus 80 vv~~ag~ 86 (243)
T PRK07102 80 VLIAVGT 86 (243)
T ss_pred EEECCcC
Confidence 9987654
No 435
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.23 E-value=3.4 Score=36.29 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCHH--------H-----------HHHHHHHHHhc--CCCeEEEEcc
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD--------S-----------LELASENAADL--ELDIDFVQCD 104 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~~--------~-----------~~~a~~~~~~~--~~~~~~~~~d 104 (216)
.+.+||-+||| .|. +.-.++..|..++..+|+|.- . ...|....... ..++.+++++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 56789999986 443 334444558889999986521 1 12233333322 2268889999
Q ss_pred cccccccccCCCcccEEEE
Q 027945 105 IRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~ 123 (216)
+.+..+.....++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 9887444322234888874
No 436
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=75.99 E-value=16 Score=28.49 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
...+|+-+||| .|. +...+++.|..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999998 454 5666667788899999987
No 437
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=75.64 E-value=38 Score=27.35 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHHhcCC----CeEEEEccccc
Q 027945 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID-SDSLELASENAADLEL----DIDFVQCDIRN 107 (216)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~----~~~~~~~d~~~ 107 (216)
-...+...+..+.......|+.+|||.=.....+.. +. .+..+|+| |+.++.-++.+...+. +..++..|+.+
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 334444444332222335799999998777666643 22 34445554 6677777777775432 67788888762
Q ss_pred ccccc----cC--CCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945 108 LEWRV----CS--VGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146 (216)
Q Consensus 108 ~~~~~----~~--~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~ 146 (216)
.... .. ....-++++...+.+.........++.+.+..
T Consensus 144 -~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~ 187 (260)
T TIGR00027 144 -DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELS 187 (260)
T ss_pred -hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhC
Confidence 1111 01 01234677766666665566666777776554
No 438
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.57 E-value=34 Score=26.47 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=50.0
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.++++|=.|+ +|.++..+++ .|. +++.+ +.++...+.....+...+.++.++.+|+.+...-. ...
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4567887775 5666655543 454 78887 88877766655555544446888999987643110 011
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
+++|.|+.+..+.
T Consensus 82 ~~id~vi~~ag~~ 94 (247)
T PRK05565 82 GKIDILVNNAGIS 94 (247)
T ss_pred CCCCEEEECCCcC
Confidence 2489999887664
No 439
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=75.50 E-value=7.9 Score=32.33 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCCCEEEEecCC-cchHHHHHHH--cCCCeEEEEeCCHHHHHHHHH
Q 027945 46 DVSNKVVADFGCG-CGTLGAAATL--LGADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 46 ~~~~~~vLD~g~G-~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~ 89 (216)
..++.+||-+||| .|.+++.+++ .+..+|+++|.++..++.++.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 3567899999975 2334445454 355689999999988888764
No 440
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.30 E-value=27 Score=27.01 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~ 116 (216)
.++++|-.|++ |.++..++ +.|. +|++++.++...+.+...+...+ ++.++.+|+.+...- ....+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 46789999986 44444444 4455 89999998877666544443322 577888888763211 10112
Q ss_pred cccEEEEcCC
Q 027945 117 HVDTVVMNPP 126 (216)
Q Consensus 117 ~fD~v~~npp 126 (216)
+.|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 3788887664
No 441
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.25 E-value=10 Score=31.60 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=40.9
Q ss_pred EEEEecCC-cch-HHHHHHHcCCCeEEEEeCCHH-------------------HHHHHHHHHHhcCC--CeEEEEccccc
Q 027945 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCDIRN 107 (216)
Q Consensus 51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (216)
+||-+||| .|. +...++..|..+++.+|.+.- -.+.|.+.++..+. +++.+..++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 36777776 332 344445568889999995421 23455555555332 66777777664
Q ss_pred ccccccCCCcccEEEE
Q 027945 108 LEWRVCSVGHVDTVVM 123 (216)
Q Consensus 108 ~~~~~~~~~~fD~v~~ 123 (216)
.......-.+||+|+.
T Consensus 81 ~~~~~~f~~~~DvVv~ 96 (312)
T cd01489 81 PDFNVEFFKQFDLVFN 96 (312)
T ss_pred ccchHHHHhcCCEEEE
Confidence 2111101113999996
No 442
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.03 E-value=26 Score=27.36 Aligned_cols=78 Identities=24% Similarity=0.244 Sum_probs=50.6
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|=.|+ +|.++..+++ .|. +|++++.++...+.....++..+.++.++.+|+.+...-. ...+
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3467776665 5666666654 354 8999999988777666666555557888899987633110 0112
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
..|.|+.+...
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 48999986654
No 443
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.00 E-value=19 Score=29.03 Aligned_cols=46 Identities=39% Similarity=0.468 Sum_probs=31.2
Q ss_pred CCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 45 ~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~ 90 (216)
...++.+||-.|+| .|.+++.+++. |..+|+++|.++...+.++..
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 34477889988764 23344555543 665699999998888777663
No 444
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.99 E-value=42 Score=27.01 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCCEEEEecCCc-chHH----HHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 48 SNKVVADFGCGC-GTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~-G~~~----~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.++++|-.|+++ +.++ ..+++.|. +|+.++.+....+.++...+..+.. .++.+|+.+...-. ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 467899999862 3344 44445565 8999998854333333332322323 56778887642111 122
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|++|.|..+.
T Consensus 82 g~iDilVnnAG~~ 94 (274)
T PRK08415 82 GKIDFIVHSVAFA 94 (274)
T ss_pred CCCCEEEECCccC
Confidence 4699999887653
No 445
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=74.99 E-value=26 Score=28.13 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-------cccCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-------RVCSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~~~ 117 (216)
+++.++--|+++|. ....+++.|. +|+.+.-..+.++.....+.. ..+.++..|+.+... .....++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 45788889998885 4566666666 999999999988888777654 256778888877422 1123356
Q ss_pred ccEEEEcCCCCC
Q 027945 118 VDTVVMNPPFGT 129 (216)
Q Consensus 118 fD~v~~npp~~~ 129 (216)
.|+++.|---..
T Consensus 82 iDiLvNNAGl~~ 93 (246)
T COG4221 82 IDILVNNAGLAL 93 (246)
T ss_pred ccEEEecCCCCc
Confidence 999998765433
No 446
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.98 E-value=9.4 Score=31.93 Aligned_cols=45 Identities=36% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCCCCEEEEecCCcchHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHH
Q 027945 46 DVSNKVVADFGCGCGTLGAAAT-L-LGADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~-~-~~~~~v~~~D~~~~~~~~a~~~ 90 (216)
..++.++.-+|+|.=.++...- + +|+.+++|+|+|++-.+.|+.-
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3466777777776544443333 2 4788999999999999988875
No 447
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.89 E-value=31 Score=26.78 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=49.6
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|+ +|.++..++ +.|. +|+.++.++...+.....+...+.++.++.+|+.+...-. ...+
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4567888885 666666554 3466 8999999887666555545444446788888886532110 0112
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
..|.|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 48999987654
No 448
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=74.85 E-value=37 Score=26.87 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEe-CCHHHHHHHHHHHHh-cCCCeEEEEccccccccc-------ccC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAID-IDSDSLELASENAAD-LELDIDFVQCDIRNLEWR-------VCS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D-~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~-------~~~ 114 (216)
.+++++|-.|++.|. +...+++.|. +|+.+. .+++..+.....++. .+.++.++..|+.+...- ...
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467889988877663 4455556566 777764 455555444333332 344678889998763211 011
Q ss_pred CCcccEEEEcCC
Q 027945 115 VGHVDTVVMNPP 126 (216)
Q Consensus 115 ~~~fD~v~~npp 126 (216)
.+++|+++.|..
T Consensus 85 ~g~id~lv~nAg 96 (260)
T PRK08416 85 FDRVDFFISNAI 96 (260)
T ss_pred cCCccEEEECcc
Confidence 235899998763
No 449
>PRK06138 short chain dehydrogenase; Provisional
Probab=74.76 E-value=26 Score=27.32 Aligned_cols=78 Identities=27% Similarity=0.291 Sum_probs=48.7
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
+++++|-.||. |.++.. +++.|. +|++++-++...+.....+. .+.++.++.+|+.+...-. ...+
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56788888875 444444 444454 89999988776665555444 3446788899987632211 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
++|.|+.+....
T Consensus 81 ~id~vi~~ag~~ 92 (252)
T PRK06138 81 RLDVLVNNAGFG 92 (252)
T ss_pred CCCEEEECCCCC
Confidence 489999876653
No 450
>PRK08267 short chain dehydrogenase; Provisional
Probab=74.70 E-value=19 Score=28.42 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=47.4
Q ss_pred CEEEEecCCcchHHH----HHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC-CCc
Q 027945 50 KVVADFGCGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS-VGH 117 (216)
Q Consensus 50 ~~vLD~g~G~G~~~~----~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~-~~~ 117 (216)
+++|-.|++. .++. .+++.|. +|+.++.++..++.....+. +.++.++++|+.+...-. .. .++
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3677777654 4443 4444565 89999998887766655443 336788899987633110 00 245
Q ss_pred ccEEEEcCCCC
Q 027945 118 VDTVVMNPPFG 128 (216)
Q Consensus 118 fD~v~~npp~~ 128 (216)
.|.|+.+....
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999877654
No 451
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.36 E-value=17 Score=29.30 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHH
Q 027945 63 GAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSM 141 (216)
Q Consensus 63 ~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~ 141 (216)
+..+.+.| ..+|+|+|.++..++.|... |.-.. ...+ .+. .. . +|+|+.--|- .....++++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~~-~~~~-~~~-~~--~---~DlvvlavP~-----~~~~~~l~~ 64 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIIDE-ASTD-IEA-VE--D---ADLVVLAVPV-----SAIEDVLEE 64 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSSE-EESH-HHH-GG--C---CSEEEE-S-H-----HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCeee-ccCC-HhH-hc--C---CCEEEEcCCH-----HHHHHHHHH
Confidence 45666666 46999999999998888654 22111 1222 111 12 3 8988854441 334456666
Q ss_pred HHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEEee
Q 027945 142 ALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY 183 (216)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (216)
.....+....+..-......+.+.+.+.+. .+..++..|..
T Consensus 65 ~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM 105 (258)
T PF02153_consen 65 IAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPM 105 (258)
T ss_dssp HHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEES
T ss_pred hhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCC
Confidence 666444333333333344445555545555 67788887773
No 452
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=74.31 E-value=20 Score=29.56 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCC--CeEEEEcc
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (216)
...+||=+||| .|. .+..++..|..+++.+|.+. ...+.+..+++..+. +++.....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 45689998886 343 34555556888999999553 123555556655444 55556555
Q ss_pred cccccccccCCCcccEEEE
Q 027945 105 IRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~ 123 (216)
..+.... . ||+|++
T Consensus 98 ~~~~~l~--~---fdvVV~ 111 (286)
T cd01491 98 LTTDELL--K---FQVVVL 111 (286)
T ss_pred CCHHHHh--c---CCEEEE
Confidence 3222222 3 998885
No 453
>PRK12743 oxidoreductase; Provisional
Probab=74.01 E-value=29 Score=27.38 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=47.6
Q ss_pred CCEEEEecCCcchHHHHHHH----cCCCeEEEEe-CCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 49 NKVVADFGCGCGTLGAAATL----LGADQVIAID-IDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D-~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
++++|-.|++ |.++..+++ .|. +|+.+. .+....+.+...++..+.++.++.+|+.+...-. ...+
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888865 445555553 455 777764 4555555555555555557888889987632110 1113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.++.+..+.
T Consensus 80 ~id~li~~ag~~ 91 (256)
T PRK12743 80 RIDVLVNNAGAM 91 (256)
T ss_pred CCCEEEECCCCC
Confidence 489999887653
No 454
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=73.58 E-value=48 Score=26.99 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=62.1
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|--|+-+|. ++..++++|. +++.+--+.+.++.....++.. ++.+.++..|+.+...-. ...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 456789999988874 5667777776 9999999999888887777653 457899999987743211 111
Q ss_pred CcccEEEEcCCCCCC
Q 027945 116 GHVDTVVMNPPFGTR 130 (216)
Q Consensus 116 ~~fD~v~~npp~~~~ 130 (216)
...|+.|-|--|+..
T Consensus 83 ~~IdvLVNNAG~g~~ 97 (265)
T COG0300 83 GPIDVLVNNAGFGTF 97 (265)
T ss_pred CcccEEEECCCcCCc
Confidence 359999999988776
No 455
>PRK06182 short chain dehydrogenase; Validated
Probab=73.18 E-value=27 Score=27.84 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
++++|=.|++ |.++..++ +.|. +|++++.++..++.... . ++.++.+|+.+...-. ...++
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~----~--~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS----L--GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----C--CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4678888864 44555544 3454 89999988766543321 1 3677888876632111 01234
Q ss_pred ccEEEEcCCCCC
Q 027945 118 VDTVVMNPPFGT 129 (216)
Q Consensus 118 fD~v~~npp~~~ 129 (216)
.|.+|.+..+..
T Consensus 75 id~li~~ag~~~ 86 (273)
T PRK06182 75 IDVLVNNAGYGS 86 (273)
T ss_pred CCEEEECCCcCC
Confidence 899999887643
No 456
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=73.08 E-value=26 Score=28.84 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=48.0
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|+.. .++.. +++.|. +|+.++.++...+.+...+...+.++.++..|+.+...-. ...+
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456788888654 44444 444564 8999998877666555544332335788888886632110 0113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|++|.|...
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 48999988654
No 457
>PRK08265 short chain dehydrogenase; Provisional
Probab=72.96 E-value=27 Score=27.69 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...+++.|. +|+.++.++...+.....+ +.++.++.+|+.+...-. ...++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 56788888865542 3344445566 8999999876554443332 335778888987642110 11134
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|.++.|...
T Consensus 81 id~lv~~ag~ 90 (261)
T PRK08265 81 VDILVNLACT 90 (261)
T ss_pred CCEEEECCCC
Confidence 8999988654
No 458
>PRK06198 short chain dehydrogenase; Provisional
Probab=72.72 E-value=33 Score=26.98 Aligned_cols=80 Identities=24% Similarity=0.251 Sum_probs=47.5
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..+++++-.|++. .++..++ +.|...|+.++.++...+.....+...+.++.++..|+.+...-. ...
T Consensus 4 ~~~k~vlItGa~g-~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQ-GLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCc-hHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3567888888644 4544444 446634999998876655444444433445777888886532110 011
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.++.+...
T Consensus 83 g~id~li~~ag~ 94 (260)
T PRK06198 83 GRLDALVNAAGL 94 (260)
T ss_pred CCCCEEEECCCc
Confidence 348999987653
No 459
>PRK07831 short chain dehydrogenase; Provisional
Probab=72.66 E-value=35 Score=26.94 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=50.2
Q ss_pred CCCEEEEecCC-cc--h-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-cC-CCeEEEEcccccccccc-------cC
Q 027945 48 SNKVVADFGCG-CG--T-LGAAATLLGADQVIAIDIDSDSLELASENAAD-LE-LDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 48 ~~~~vLD~g~G-~G--~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~-~~~~~~~~d~~~~~~~~-------~~ 114 (216)
.++++|-.|+. +| . +...+++.|. +|+.+|.++..++.+...++. .+ .++.++.+|+.+...-. ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888863 33 2 3444455566 799999988777766665544 23 25778888987632110 01
Q ss_pred CCcccEEEEcCCCC
Q 027945 115 VGHVDTVVMNPPFG 128 (216)
Q Consensus 115 ~~~fD~v~~npp~~ 128 (216)
.++.|.++.+..+.
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 13489999887653
No 460
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=72.34 E-value=2.9 Score=33.86 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=30.0
Q ss_pred CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~ 81 (216)
..+++.++|+.+|||.++...-.+|. .|++-|+.-
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~ 59 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEY 59 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHH
Confidence 35677999999999999999999766 899999843
No 461
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.30 E-value=31 Score=26.81 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc---c-----c-
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW---R-----V- 112 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~-----~- 112 (216)
.+++++|-.|| +|.++..++ +.|. +|++++.++...+.....+...+. .+.++..|+.+... . .
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 35678999996 444444444 4455 899999998777666555543322 34556666543110 0 0
Q ss_pred cCC-CcccEEEEcCCC
Q 027945 113 CSV-GHVDTVVMNPPF 127 (216)
Q Consensus 113 ~~~-~~fD~v~~npp~ 127 (216)
... +..|.|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 000 248999876553
No 462
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.23 E-value=34 Score=27.50 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCCEEEEecCCc--c---hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 48 SNKVVADFGCGC--G---TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~--G---~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.++++|-.|++. | .++..+++.|. +|+.++.+....+..+...+..+. ...+.+|+.+...-. ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 567899999875 4 24555555565 888888765433333333332232 235778887632110 122
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|.+|.|.-..
T Consensus 84 g~iD~lVnnAG~~ 96 (271)
T PRK06505 84 GKLDFVVHAIGFS 96 (271)
T ss_pred CCCCEEEECCccC
Confidence 4599999887543
No 463
>PRK06701 short chain dehydrogenase; Provisional
Probab=71.93 E-value=30 Score=28.14 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH-HHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
..++++|-.|++.|. ++..+++.|. +|+.++.++ ...+.....++..+.++.++.+|+.+...-. ...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788888875543 3444445565 888888764 2334444444444446778888886632111 011
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.+|.+...
T Consensus 123 ~~iD~lI~~Ag~ 134 (290)
T PRK06701 123 GRLDILVNNAAF 134 (290)
T ss_pred CCCCEEEECCcc
Confidence 348999977654
No 464
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.86 E-value=29 Score=27.61 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=39.3
Q ss_pred EEEEecCC-cch-HHHHHHHcCCCeEEEEeCCHH-------------------HHHHHHHHHHhcCC--CeEEEEccccc
Q 027945 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCDIRN 107 (216)
Q Consensus 51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d~~~ 107 (216)
+||-+||| .|. +...+++.|..+++.+|.|.- -.+.|.++++..+. +++.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 36677776 443 344444568889999996521 12445555544332 56666666632
Q ss_pred ---ccccccCCCcccEEEE
Q 027945 108 ---LEWRVCSVGHVDTVVM 123 (216)
Q Consensus 108 ---~~~~~~~~~~fD~v~~ 123 (216)
+... .-.+||+|+.
T Consensus 81 ~~~~~~~--f~~~~DvVi~ 97 (234)
T cd01484 81 EQDFNDT--FFEQFHIIVN 97 (234)
T ss_pred hhhchHH--HHhCCCEEEE
Confidence 1111 1123999996
No 465
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.84 E-value=33 Score=27.41 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccccccc------cCCC
Q 027945 49 NKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRV------CSVG 116 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~------~~~~ 116 (216)
++++|-.|++. .++.. +++.|. +|++++-++...+.........+ .++.++.+|+.+...-. ...+
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 45678888544 44444 344455 89999988776666554444333 26788899987743110 0113
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
+.|.|+.+....
T Consensus 81 ~id~vv~~ag~~ 92 (280)
T PRK06914 81 RIDLLVNNAGYA 92 (280)
T ss_pred CeeEEEECCccc
Confidence 489999876543
No 466
>PRK08251 short chain dehydrogenase; Provisional
Probab=71.80 E-value=32 Score=26.84 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEccccccccc-------ccCC
Q 027945 49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWR-------VCSV 115 (216)
Q Consensus 49 ~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~-------~~~~ 115 (216)
++++|-.|+ +|.++..++ +.|. +|+.++.++...+.....+... +.++.++.+|+.+...- ....
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 357887775 566655555 3454 8999999888776665554432 33678889998764211 0112
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
+..|.++.|..+.
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 3489999877553
No 467
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=71.40 E-value=29 Score=24.87 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=20.7
Q ss_pred EEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 51 VVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
+|+=+||| .|. +...+++.|..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 36778886 444 3455556688899999866
No 468
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.22 E-value=20 Score=31.83 Aligned_cols=70 Identities=24% Similarity=0.184 Sum_probs=40.7
Q ss_pred CCCEEEEecCCcchH-HHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945 48 SNKVVADFGCGCGTL-GAAAT-LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~-~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np 125 (216)
.+++|+-+|.|--.+ ...++ +.|. +|++.|.++...+. ++..| +.+..++....... . +|+||..|
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~----l~~~g--~~~~~~~~~~~~l~--~---~D~VV~Sp 78 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP----HAERG--VATVSTSDAVQQIA--D---YALVVTSP 78 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH----HHhCC--CEEEcCcchHhHhh--c---CCEEEECC
Confidence 567899999984443 33333 4455 99999987654332 23333 44443332111111 3 89999988
Q ss_pred CCCC
Q 027945 126 PFGT 129 (216)
Q Consensus 126 p~~~ 129 (216)
....
T Consensus 79 Gi~~ 82 (488)
T PRK03369 79 GFRP 82 (488)
T ss_pred CCCC
Confidence 6543
No 469
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.13 E-value=23 Score=28.13 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc--------cccCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--------RVCSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 115 (216)
..+.||-.||.+|.++.++++ .|+ .|+++--+-+......... .+.....|+..... ....+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~-----gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF-----GLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh-----CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 456899999999998888775 355 8998876544333322221 35556666554211 01145
Q ss_pred CcccEEEEcC
Q 027945 116 GHVDTVVMNP 125 (216)
Q Consensus 116 ~~fD~v~~np 125 (216)
|+.|+.+-|.
T Consensus 80 Gkld~L~NNA 89 (289)
T KOG1209|consen 80 GKLDLLYNNA 89 (289)
T ss_pred CceEEEEcCC
Confidence 6799988653
No 470
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=70.94 E-value=21 Score=29.31 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccccccccCCCcccEE
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.++++|-.| |+|.++..+++ .|. +|+++..++...+.........+ .+++++.+|+.+...-...-...|.|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 356888887 56777666664 344 78887766544333322221112 25788899987743211110128988
Q ss_pred EEcCC
Q 027945 122 VMNPP 126 (216)
Q Consensus 122 ~~npp 126 (216)
+.+..
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 86554
No 471
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.90 E-value=8 Score=30.82 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCCCCC-CEEEEecCCcchHHHHHHHc--C------C--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEE
Q 027945 34 SRMLYTAENSFGDVSN-KVVADFGCGCGTLGAAATLL--G------A--DQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (216)
Q Consensus 34 ~~~l~~~~~~~~~~~~-~~vLD~g~G~G~~~~~l~~~--~------~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~ 102 (216)
+..|..+.+.+....+ ++++|+++-.|.-+..+++. . . .+++++|+.+.+ ... .+..++
T Consensus 26 AFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~--GV~qlq 95 (294)
T KOG1099|consen 26 AFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIE--GVIQLQ 95 (294)
T ss_pred HHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccC--ceEEee
Confidence 3445555555454455 69999999999988888863 1 1 139999997621 111 466778
Q ss_pred cccccccccc----c-CCCcccEEEEcCC
Q 027945 103 CDIRNLEWRV----C-SVGHVDTVVMNPP 126 (216)
Q Consensus 103 ~d~~~~~~~~----~-~~~~fD~v~~npp 126 (216)
+|+....... . ..++.|+|+||..
T Consensus 96 ~DIT~~stae~Ii~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 96 GDITSASTAEAIIEHFGGEKADLVVCDGA 124 (294)
T ss_pred cccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence 8876632211 0 1236999999865
No 472
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.88 E-value=54 Score=27.34 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..+.+++-.|+-+|. ....++.+| .+|+..--|.+..+.+...+.... .++.+++.|+..+..-. ..
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 456788888887764 466777778 599999999877777776666522 26888999987642111 13
Q ss_pred CCcccEEEEcC
Q 027945 115 VGHVDTVVMNP 125 (216)
Q Consensus 115 ~~~fD~v~~np 125 (216)
..+.|+.|.|-
T Consensus 112 ~~~ldvLInNA 122 (314)
T KOG1208|consen 112 EGPLDVLINNA 122 (314)
T ss_pred CCCccEEEeCc
Confidence 34689888753
No 473
>PRK12829 short chain dehydrogenase; Provisional
Probab=70.80 E-value=38 Score=26.57 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.+++++|-.|++ |.++..++ +.|. +|++++.++...+......... ++.++.+|+.+...-. ...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899988876 55555444 3455 7999999877665544433221 4677888887633110 011
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
++.|.|+.+....
T Consensus 85 ~~~d~vi~~ag~~ 97 (264)
T PRK12829 85 GGLDVLVNNAGIA 97 (264)
T ss_pred CCCCEEEECCCCC
Confidence 2489999766543
No 474
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.77 E-value=39 Score=26.02 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=49.8
Q ss_pred CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|=.|+ +|.++..+++ +|. +|++++-++...+.....++..+.++.++.+|+.+...-. ...+
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3467887776 6766666553 455 6999999887766655555544556788888887632110 0112
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.|+.+...
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 37999977654
No 475
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=70.69 E-value=35 Score=26.68 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=47.3
Q ss_pred EEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCccc
Q 027945 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVD 119 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD 119 (216)
++|-.|+ +|.++..++ +.|. +|+.++.++...+.....+...+.++.++.+|+.+...-. ...++.|
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5667775 455555444 4455 8999998877666655555554556788889986632110 0112479
Q ss_pred EEEEcCCCC
Q 027945 120 TVVMNPPFG 128 (216)
Q Consensus 120 ~v~~npp~~ 128 (216)
.++.+....
T Consensus 80 ~vi~~ag~~ 88 (254)
T TIGR02415 80 VMVNNAGVA 88 (254)
T ss_pred EEEECCCcC
Confidence 999877653
No 476
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.63 E-value=48 Score=26.12 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCCEEEEecCCc-chH----HHHHHHcCCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945 47 VSNKVVADFGCGC-GTL----GAAATLLGADQVIAIDID-----------SDSLELASENAADLELDIDFVQCDIRNLEW 110 (216)
Q Consensus 47 ~~~~~vLD~g~G~-G~~----~~~l~~~~~~~v~~~D~~-----------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 110 (216)
..++++|-.|++. +.+ ...++++|. +|+.++.. ....+.....++..+.++.++..|+.+...
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 4678999999862 333 444445565 77776421 222233344555555577888888765321
Q ss_pred cc-------cCCCcccEEEEcCCCC
Q 027945 111 RV-------CSVGHVDTVVMNPPFG 128 (216)
Q Consensus 111 ~~-------~~~~~fD~v~~npp~~ 128 (216)
-. ...+..|.++.|....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCC
Confidence 10 1123489999987653
No 477
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.58 E-value=33 Score=27.28 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCCCEEEEecC-CcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGC-GCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~-G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
.+++++|-.|+ |++.++..++ +.|. +|+.++.+....+.+++..+..+ ....+++|+.+...-. ..
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHHH
Confidence 35678999997 3455555555 4465 88887665433344444333323 2346778877632110 12
Q ss_pred CCcccEEEEcCCCC
Q 027945 115 VGHVDTVVMNPPFG 128 (216)
Q Consensus 115 ~~~fD~v~~npp~~ 128 (216)
.++.|++|.|....
T Consensus 82 ~g~iD~lVnnAG~~ 95 (261)
T PRK08690 82 WDGLDGLVHSIGFA 95 (261)
T ss_pred hCCCcEEEECCccC
Confidence 24599999987654
No 478
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.41 E-value=40 Score=26.77 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCCEEEEecCCc-chHHHHH----HHcCCCeEEEEeCCH---HHHHHHHHHHHhcCCCeEEEEcccccccccc------
Q 027945 47 VSNKVVADFGCGC-GTLGAAA----TLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNLEWRV------ 112 (216)
Q Consensus 47 ~~~~~vLD~g~G~-G~~~~~l----~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------ 112 (216)
..++++|-.|+++ +.++..+ ++.|. +|+.++.+. ..++.....++ +.++.++..|+.+...-.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 3568999999863 4444444 44565 888886542 33333332221 235677888887632111
Q ss_pred -cCCCcccEEEEcCCCC
Q 027945 113 -CSVGHVDTVVMNPPFG 128 (216)
Q Consensus 113 -~~~~~fD~v~~npp~~ 128 (216)
...++.|.++.|..+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 1225699999887543
No 479
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=70.15 E-value=8.4 Score=35.05 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCH
Q 027945 32 IASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDS 81 (216)
Q Consensus 32 ~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~ 81 (216)
-+++.|.++...+.. .++..|||+||..|+-....++. + ..-|+|+|+-|
T Consensus 27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 345555555555443 46679999999999988777754 4 45899999876
No 480
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=70.08 E-value=38 Score=24.35 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=40.5
Q ss_pred CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV 122 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~ 122 (216)
.++++++-+||| ..+..++ +.+..+|+.+|.++...+.......... +.....|..+. ... .|+|+
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~---~Dvvi 86 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEEL---LAE---ADLII 86 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhc---ccc---CCEEE
Confidence 456889999986 3433333 4444589999999877665544433211 11122232222 113 89999
Q ss_pred EcCCCC
Q 027945 123 MNPPFG 128 (216)
Q Consensus 123 ~npp~~ 128 (216)
+.-|..
T Consensus 87 ~~~~~~ 92 (155)
T cd01065 87 NTTPVG 92 (155)
T ss_pred eCcCCC
Confidence 765543
No 481
>PRK07201 short chain dehydrogenase; Provisional
Probab=70.04 E-value=32 Score=31.46 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|++. .++.. +++.|. +|++++.++..++.....+...+.++.++.+|+.+...-. ...+
T Consensus 370 ~~k~vlItGas~-giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 370 VGKVVLITGASS-GIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 456788777654 44444 444565 8999999988777666665544446788888987632111 1123
Q ss_pred cccEEEEcCCCC
Q 027945 117 HVDTVVMNPPFG 128 (216)
Q Consensus 117 ~fD~v~~npp~~ 128 (216)
..|+++.|....
T Consensus 448 ~id~li~~Ag~~ 459 (657)
T PRK07201 448 HVDYLVNNAGRS 459 (657)
T ss_pred CCCEEEECCCCC
Confidence 489999887653
No 482
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.94 E-value=35 Score=26.88 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~ 117 (216)
.++++|-.|++.|. +...+++.|. +|+.++.++. .+.....+...+.++.++.+|+.+...-. ...+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 56788888866542 3444455565 8999998864 33333334333445777888877632110 11134
Q ss_pred ccEEEEcCC
Q 027945 118 VDTVVMNPP 126 (216)
Q Consensus 118 fD~v~~npp 126 (216)
.|.++.|..
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 899998764
No 483
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.94 E-value=33 Score=26.93 Aligned_cols=78 Identities=27% Similarity=0.309 Sum_probs=47.4
Q ss_pred CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++...+.. ..+...+.++.++..|+.+...-. ...
T Consensus 5 l~~~~ilItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 5 LKDKVVIVTGGA-SGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA-EELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred cCCCEEEEeCCC-ChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH-HHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456788888865 4444444 44465 788888877665333 333334446788889987632110 111
Q ss_pred CcccEEEEcCCC
Q 027945 116 GHVDTVVMNPPF 127 (216)
Q Consensus 116 ~~fD~v~~npp~ 127 (216)
++.|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 348999988764
No 484
>PRK06484 short chain dehydrogenase; Validated
Probab=69.68 E-value=68 Score=28.34 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~ 117 (216)
+++++|-.|++.|. +...++++|. +|+.++.++..++.+...+ +.++.++..|+.+...- ....++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFGR 79 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 56788888887762 3444555565 8999999887666554433 33566788887653211 011245
Q ss_pred ccEEEEcCCC
Q 027945 118 VDTVVMNPPF 127 (216)
Q Consensus 118 fD~v~~npp~ 127 (216)
.|.+|.|..+
T Consensus 80 iD~li~nag~ 89 (520)
T PRK06484 80 IDVLVNNAGV 89 (520)
T ss_pred CCEEEECCCc
Confidence 9999988654
No 485
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=69.66 E-value=27 Score=26.70 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=42.8
Q ss_pred EEEEecCCcchHHHHHHH-------cCCCeEEEEeCCHHHHHHH----HHHHHhcCCCeEEE-EcccccccccccCCCcc
Q 027945 51 VVADFGCGCGTLGAAATL-------LGADQVIAIDIDSDSLELA----SENAADLELDIDFV-QCDIRNLEWRVCSVGHV 118 (216)
Q Consensus 51 ~vLD~g~G~G~~~~~l~~-------~~~~~v~~~D~~~~~~~~a----~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~f 118 (216)
+|.=+|+||-.++..+.. ....++...|+|++.++.. +.-.+..+..+++. ..|..+... . .
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~-g-----A 74 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALE-G-----A 74 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHT-T-----E
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhC-C-----C
Confidence 456689999887755553 1334999999999877654 44455556666665 344444333 2 7
Q ss_pred cEEEE
Q 027945 119 DTVVM 123 (216)
Q Consensus 119 D~v~~ 123 (216)
|+|+.
T Consensus 75 DfVi~ 79 (183)
T PF02056_consen 75 DFVIN 79 (183)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99997
No 486
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.59 E-value=48 Score=26.50 Aligned_cols=79 Identities=19% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCEEEEecCCcc-hH----HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945 48 SNKVVADFGCGCG-TL----GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV 115 (216)
Q Consensus 48 ~~~~vLD~g~G~G-~~----~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~ 115 (216)
.++++|-.|+++| .+ ...+++.|. +|+.++.+....+.+.......+ ...++.+|+.+...-. ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG-SDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccC-CceEeecCCCCHHHHHHHHHHHHhhc
Confidence 5678999998762 43 455555565 78888876432233322222212 3456778876632110 122
Q ss_pred CcccEEEEcCCCC
Q 027945 116 GHVDTVVMNPPFG 128 (216)
Q Consensus 116 ~~fD~v~~npp~~ 128 (216)
+++|++|.|..+.
T Consensus 83 g~iD~linnAg~~ 95 (262)
T PRK07984 83 PKFDGFVHSIGFA 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 4599999988654
No 487
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.43 E-value=54 Score=25.85 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCCEEEEecCCc-chH----HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945 47 VSNKVVADFGCGC-GTL----GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS 114 (216)
Q Consensus 47 ~~~~~vLD~g~G~-G~~----~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~ 114 (216)
..++++|-.|+++ +.+ +..+++.|. +|+.++.+....+.+++.. +.++.++..|+.+...-. ..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567899999873 334 444455565 8988887743333322221 124677888886532110 12
Q ss_pred CCcccEEEEcCCCC
Q 027945 115 VGHVDTVVMNPPFG 128 (216)
Q Consensus 115 ~~~fD~v~~npp~~ 128 (216)
.++.|+++.|..+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 24599999887654
No 488
>PLN02427 UDP-apiose/xylose synthase
Probab=69.36 E-value=17 Score=30.82 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=41.8
Q ss_pred CCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHH-hcCCCeEEEEcccccccccccCCCcccEE
Q 027945 47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 47 ~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.+.++||-.| |+|.++..+++ .+..+|+++|.+............ ...-+++++.+|+.+...-...-..+|+|
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 3456788655 78888777765 333489999976543322111100 01115889999987643211011128988
Q ss_pred E
Q 027945 122 V 122 (216)
Q Consensus 122 ~ 122 (216)
|
T Consensus 91 i 91 (386)
T PLN02427 91 I 91 (386)
T ss_pred E
Confidence 7
No 489
>PLN02740 Alcohol dehydrogenase-like
Probab=69.32 E-value=19 Score=30.58 Aligned_cols=45 Identities=31% Similarity=0.458 Sum_probs=31.3
Q ss_pred CCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 45 ~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
...++.+||-.|+| .|..++.+++. |..+|+++|.++..++.++.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34567899999864 23344455543 55579999999988888865
No 490
>PRK06500 short chain dehydrogenase; Provisional
Probab=68.90 E-value=49 Score=25.68 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCCc
Q 027945 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVGH 117 (216)
Q Consensus 48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~ 117 (216)
+++++|-.|++.|. +...+++.|. +|++++.++..++.....+ +.++.++++|..+.... ....++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45678877765442 2333444565 8999998876554443332 33566777887653211 011134
Q ss_pred ccEEEEcCCCC
Q 027945 118 VDTVVMNPPFG 128 (216)
Q Consensus 118 fD~v~~npp~~ 128 (216)
.|.++.+..+.
T Consensus 81 id~vi~~ag~~ 91 (249)
T PRK06500 81 LDAVFINAGVA 91 (249)
T ss_pred CCEEEECCCCC
Confidence 89999877653
No 491
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.70 E-value=22 Score=29.65 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=32.3
Q ss_pred CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~ 89 (216)
...++.+||-.|||. |..++.+++. |. +|+++|.+++.++.++.
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 345678999999853 4555666654 55 89999999988887755
No 492
>PRK08223 hypothetical protein; Validated
Probab=68.39 E-value=18 Score=29.83 Aligned_cols=75 Identities=24% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCHH-------------------HHHHHHHHHHhcCC--CeEEEEcc
Q 027945 48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDSD-------------------SLELASENAADLEL--DIDFVQCD 104 (216)
Q Consensus 48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~~-------------------~~~~a~~~~~~~~~--~~~~~~~d 104 (216)
...+||-+||| .|. ....+++.|..+++.+|-|.- -.+.+++.++..+. +++.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56789999998 455 567777889889999996522 23556666655433 55555544
Q ss_pred cccccccccCCCcccEEEE
Q 027945 105 IRNLEWRVCSVGHVDTVVM 123 (216)
Q Consensus 105 ~~~~~~~~~~~~~fD~v~~ 123 (216)
+.+..... --..+|+|+.
T Consensus 106 l~~~n~~~-ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADA-FLDGVDVYVD 123 (287)
T ss_pred cCccCHHH-HHhCCCEEEE
Confidence 43321111 0013999983
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=68.31 E-value=20 Score=30.68 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945 47 VSNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID 80 (216)
Q Consensus 47 ~~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~ 80 (216)
....+||-+||| .|. ....+++.|..+++.+|-|
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 356789999998 344 4556667788899999966
No 494
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=68.15 E-value=33 Score=28.67 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=45.4
Q ss_pred CCCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945 46 DVSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121 (216)
Q Consensus 46 ~~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v 121 (216)
.+.+++||-.| |+|.++..+++ .|. +|++++.++...+........ +.+++++.+|+.+...-...-..+|.|
T Consensus 7 ~~~~~~vLVtG-~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 7 ESATGTYCVTG-ATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred ccCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 34667899888 46777776665 344 899988776443332222211 225788899987643111000128988
Q ss_pred EEcCC
Q 027945 122 VMNPP 126 (216)
Q Consensus 122 ~~npp 126 (216)
+-...
T Consensus 84 ih~A~ 88 (353)
T PLN02896 84 FHVAA 88 (353)
T ss_pred EECCc
Confidence 85443
No 495
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.01 E-value=22 Score=30.12 Aligned_cols=73 Identities=19% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCCEEEEecCCc-ch-HHHHHHHcCCCeEEEEeCCH-------------------HHHHHHHHHHHhcCC--CeEEEEcc
Q 027945 48 SNKVVADFGCGC-GT-LGAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (216)
Q Consensus 48 ~~~~vLD~g~G~-G~-~~~~l~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~--~~~~~~~d 104 (216)
...+||-+|||. |. ....+++.|..+++.+|-+. .-.+.+.++++..+. +++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 557999999983 44 45666677888999999663 234556666665443 45555444
Q ss_pred cccc--cccccCCCcccEEEE
Q 027945 105 IRNL--EWRVCSVGHVDTVVM 123 (216)
Q Consensus 105 ~~~~--~~~~~~~~~fD~v~~ 123 (216)
+... ...... +|+|+.
T Consensus 107 i~~~~~~~~~~~---~DvVvd 124 (355)
T PRK05597 107 LTWSNALDELRD---ADVILD 124 (355)
T ss_pred cCHHHHHHHHhC---CCEEEE
Confidence 4321 111123 999996
No 496
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=67.97 E-value=17 Score=32.00 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCEEEEecCC-cchHH-HHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945 49 NKVVADFGCG-CGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126 (216)
Q Consensus 49 ~~~vLD~g~G-~G~~~-~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp 126 (216)
+++|+-+|-| +|.-. ..+.+.| ..|+..|.++............ ..+++..+........ . +|+|+.+|-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~--~~i~~~~g~~~~~~~~--~---~d~vV~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLL--EGIEVELGSHDDEDLA--E---FDLVVKSPG 78 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCccchhhhhhhc--cCceeecCccchhccc--c---CCEEEECCC
Confidence 6789999988 45433 3444556 5999999887662222221111 1466666655442222 3 999999997
Q ss_pred CCCC
Q 027945 127 FGTR 130 (216)
Q Consensus 127 ~~~~ 130 (216)
....
T Consensus 79 i~~~ 82 (448)
T COG0771 79 IPPT 82 (448)
T ss_pred CCCC
Confidence 6554
No 497
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.83 E-value=55 Score=26.52 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=25.0
Q ss_pred EEEEecCCc--chHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945 51 VVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASE 89 (216)
Q Consensus 51 ~vLD~g~G~--G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~ 89 (216)
+|.=+|+|. |.++..+.+.|. +|+++|.++..++.+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 455566653 234445555554 89999999988777654
No 498
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.78 E-value=24 Score=29.74 Aligned_cols=45 Identities=33% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945 46 DVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (216)
Q Consensus 46 ~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~ 90 (216)
..++.+||-.||| .|..++.+++. |..+|+++|.+++..+.++..
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 4567889988875 23445556654 555899999999888888553
No 499
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.21 E-value=80 Score=27.01 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=48.3
Q ss_pred CCCEEEEecCCcch----HHHHHHHcC----CCeEEEEeC----CHHHHHHHHHHHHh----cCCCeEEEE---cccccc
Q 027945 48 SNKVVADFGCGCGT----LGAAATLLG----ADQVIAIDI----DSDSLELASENAAD----LELDIDFVQ---CDIRNL 108 (216)
Q Consensus 48 ~~~~vLD~g~G~G~----~~~~l~~~~----~~~v~~~D~----~~~~~~~a~~~~~~----~~~~~~~~~---~d~~~~ 108 (216)
+.-.|+|+|.|.|. +...++.+. .-++|+++. +...++.+..++.. .|+..+|.. .++.++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 44589999999994 556666552 238899998 77777777666543 466555544 344443
Q ss_pred cccccCCCcccEEEEcCCC
Q 027945 109 EWRVCSVGHVDTVVMNPPF 127 (216)
Q Consensus 109 ~~~~~~~~~fD~v~~npp~ 127 (216)
....-.-..=+.++.|.+|
T Consensus 190 ~~~~l~~~~~E~laVn~~~ 208 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF 208 (374)
T ss_pred CHHHhCccCCcEEEEEeeh
Confidence 2222010114567777777
No 500
>PLN02253 xanthoxin dehydrogenase
Probab=67.12 E-value=42 Score=26.79 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=47.0
Q ss_pred CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG 116 (216)
Q Consensus 48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~ 116 (216)
.++++|-.|++ |.++..++ +.|. +|+.++.++...+.....+.. +.++.++.+|+.+...-. ...+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56788888854 44454444 4455 899999887665544444321 235788888887642211 1113
Q ss_pred cccEEEEcCCC
Q 027945 117 HVDTVVMNPPF 127 (216)
Q Consensus 117 ~fD~v~~npp~ 127 (216)
+.|.++.+...
T Consensus 94 ~id~li~~Ag~ 104 (280)
T PLN02253 94 TLDIMVNNAGL 104 (280)
T ss_pred CCCEEEECCCc
Confidence 48999987644
Done!