BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027947
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
+G AE + + V E AC+ AR++ D D +G +S P
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 35/174 (20%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG + TE ++G D + + +P +V KVH Y+++G+++I+T ++ AT
Sbjct: 17 LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
G ++ + ++R +V IA R ++ LV +G
Sbjct: 73 LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAK 197
G E G + E E R V I+ G D I FET + LE K
Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIMVEEGVDGIIFETFSDILELK 155
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19 CGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQ 78
G + DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++
Sbjct: 19 AGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFY 77
Query: 79 ATIQGFEAKG 88
A+ E +G
Sbjct: 78 ASEDKLENRG 87
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG + TE ++G D + + +P +V KVH Y+++G+++I+T ++ AT
Sbjct: 17 LLDGAYGTEFXKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRXK 72
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
G ++ + ++R +V IA R ++ LV +G
Sbjct: 73 LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAK 197
G E G + E E R V I G D I FET + LE K
Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIXVEEGVDGIIFETFSDILELK 155
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 133 PVLVAASV--GSYGAYLADGSEYSGDY 157
P+L+ ++ G +GAY+AD SEY G Y
Sbjct: 387 PILLEITIPEGVHGAYIADMSEYPGQY 413
>pdb|4FK7|A Chain A, Crystal Structure Of Certhrax Catalytic Domain
Length = 229
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 133 PVLVAASV--GSYGAYLADGSEYSGDY 157
P+L+ ++ G +GAY+AD SEY G Y
Sbjct: 164 PILLEITIPEGVHGAYIADMSEYPGQY 190
>pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc
Binding And Rna Polymerase Domains)
Length = 407
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 121 WDFTGSGRISSR---PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLIL 177
+D +GR + + P+L++A V Y YL +G Y D E +KEF + + L
Sbjct: 294 YDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEG--YDPD-------EFIKEFGKEELRRL 344
Query: 178 ANSGADLIAFETI 190
NS +L FET+
Sbjct: 345 INSSGEL--FETL 355
>pdb|2I5U|A Chain A, Crystal Structure Of Dnad Domain Protein From Enterococcus
Faecalis. Structural Genomics Target Apc85179
Length = 83
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 81 IQGFEAKGFSTEEAEALLRRSVEIACE--AREIYYDRCMKDSWDFTGSGRISSRP 133
I FE G S +EAE L+ +++EIA + AR Y + W+ G + R
Sbjct: 28 ISDFEKIGASQKEAEQLIVKAIEIAIDANARNYNYINAILKDWEQRGFKSVEERE 82
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 21 GYSVVDGGFATELERHGADLNDPLWSAKCLVS-----SPHLVRKVHLDYLDAGANIIITA 75
GY VV FA + + DLND L + KCLVS + +LV K+ ++ GA ++ +
Sbjct: 219 GYGVVY--FAENVLK---DLNDNLENKKCLVSGSGNVAQYLVEKL----IEKGAIVLTMS 269
Query: 76 SYQATIQGFEAKGFSTEEAEALL 98
I E GF+ E+ ++
Sbjct: 270 DSNGYI--LEPNGFTKEQLNYIM 290
>pdb|3SWT|A Chain A, Crystal Structure Of The Taurine Catabolism Dioxygenase,
Taud From Mycobacterium Marinum
pdb|3SWT|B Chain B, Crystal Structure Of The Taurine Catabolism Dioxygenase,
Taud From Mycobacterium Marinum
Length = 302
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 38 ADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEE 93
A+L +PL KCLV + + DY+ A +T + QA Q F+ F TE
Sbjct: 139 AELPEPL---KCLVENLWALHTNRYDYVANEAVQALTDTQQAFRQAFQKPDFRTEH 191
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 74 TASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREI 111
TAS+ + I G+E K F E + +LR V I E R I
Sbjct: 87 TASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 342 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 382
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 342 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 382
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 343 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 383
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITAS 76
++ GFA+ +E GAD +P W+ K L+ + R + +D L + + AS
Sbjct: 345 LNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS 396
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 386 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 426
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 94 AEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEY 153
A+ L R+VEIA R ++ SW ++ + PV + VG A DG EY
Sbjct: 210 AKVLHPRAVEIA---RNYGIPLVVRSSWSDEPGTKVVAPPVQNRSLVGLEIAKAVDGVEY 266
Query: 154 SGDYG 158
D
Sbjct: 267 DADQA 271
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 5 SNGTTSFMTDF-LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVS 52
SNG+T+F+ DF Q G ++ + + E + G DL+ +WS K +
Sbjct: 172 SNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSG-DLDADIWSGKSTFT 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,535,436
Number of Sequences: 62578
Number of extensions: 269424
Number of successful extensions: 616
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 23
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)