BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027947
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3
PE=1 SV=2
Length = 347
Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/193 (79%), Positives = 173/193 (89%)
Query: 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68
Query: 68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
GANIIITASYQATIQGF AKG S EAE LLRRSVEI EAREI+Y+RC K SWDF +G
Sbjct: 69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128
Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
+ S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188
Query: 188 ETIPNKLEAKVFS 200
ETIPNKLEA+ ++
Sbjct: 189 ETIPNKLEAEAYA 201
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2
PE=1 SV=1
Length = 333
Score = 283 bits (725), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 135/189 (71%), Positives = 160/189 (84%), Gaps = 2/189 (1%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
M DFL++ GGY+V+DGG ATE ERHGADLNDPLWSAKCLV+SPHL+ VHLDYL+AGA+I
Sbjct: 9 MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
I +ASYQATIQGFEAKGFS EE+E+LL++SVEIA EAR YYD+C S +
Sbjct: 69 ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSS--SMDDKILKK 126
Query: 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP 191
RP+LVAASVGSYGAYLADGSEYSG YGD+++LE LK+FHRRR+ +LA SGADLIAFETIP
Sbjct: 127 RPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIP 186
Query: 192 NKLEAKVFS 200
NK+EA+ F+
Sbjct: 187 NKIEAQAFA 195
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA
PE=1 SV=1
Length = 338
Score = 280 bits (715), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 132/194 (68%), Positives = 161/194 (82%), Gaps = 1/194 (0%)
Query: 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
++ +TDFL + G +V+ GG TEL+RHGADLNDPLWSAKCL+S PHL+R+VHLDYL+
Sbjct: 2 SSPLITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLEN 61
Query: 68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
GA+IIITASYQATIQGF+AKGFS EE EALLRRSVEIA EAR++YY RC + S D
Sbjct: 62 GADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDS 121
Query: 128 RI-SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIA 186
RI RP+L+A SVGSYGAYLADGSE+SG+YGDA+ ETLK+FHRR+V ILA+SG DL+A
Sbjct: 122 RILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLA 181
Query: 187 FETIPNKLEAKVFS 200
FE +PNKLEA+ ++
Sbjct: 182 FEAVPNKLEAQAYA 195
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var.
italica GN=SMT PE=1 SV=1
Length = 346
Score = 277 bits (709), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/203 (67%), Positives = 169/203 (83%), Gaps = 6/203 (2%)
Query: 1 MVSGSNGTTSF--MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVR 58
MV+G+ +F M + L++ GGY+++DGG ATELERHGADLNDPLWSAKCL++SPHL+
Sbjct: 1 MVTGNTKAETFYSMKELLKETGGYAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLIH 60
Query: 59 KVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMK 118
VHLDYL+AGA+II +ASYQATIQGFEAKG+S E++E+LLR+SVEIACEAR YYD+C
Sbjct: 61 TVHLDYLEAGADIISSASYQATIQGFEAKGYSIEKSESLLRKSVEIACEARSTYYDKCKD 120
Query: 119 DSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILA 178
D + RP+LVAASVGSYGA+LADGSEYSG YGD ++LETLK+FHRRRV +LA
Sbjct: 121 DD----DKKILKKRPILVAASVGSYGAFLADGSEYSGIYGDLITLETLKDFHRRRVQVLA 176
Query: 179 NSGADLIAFETIPNKLEAKVFSK 201
SGAD+IAFETIPNKLEA+ F++
Sbjct: 177 ESGADIIAFETIPNKLEAQAFAE 199
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1
Length = 339
Score = 254 bits (648), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/199 (63%), Positives = 155/199 (77%), Gaps = 7/199 (3%)
Query: 1 MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
+V+ + + ++ GG V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKV
Sbjct: 2 VVTAAGSAEEAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKV 61
Query: 61 HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
H+DYL+AGANIIITASYQATIQGFE+KGFS E++E LL +SVEIA EARE++ ++ S
Sbjct: 62 HMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKS 121
Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
PVLVAAS+GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +
Sbjct: 122 TPI-------QHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEA 174
Query: 181 GADLIAFETIPNKLEAKVF 199
G DLIAFETIPNKLEA+ +
Sbjct: 175 GPDLIAFETIPNKLEAEAY 193
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1
Length = 338
Score = 250 bits (639), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/185 (65%), Positives = 150/185 (81%), Gaps = 7/185 (3%)
Query: 15 FLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIIT 74
++ GG V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKVH+DYL+AGANIIIT
Sbjct: 16 WVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIIT 75
Query: 75 ASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPV 134
ASYQATIQGFE+KGFS E++E LL +SV+IA EARE++ ++ S P+
Sbjct: 76 ASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPI-------QHPI 128
Query: 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKL 194
LVAA++GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +G DLIAFETIPNKL
Sbjct: 129 LVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKL 188
Query: 195 EAKVF 199
EA+ +
Sbjct: 189 EAQAY 193
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1
Length = 342
Score = 243 bits (621), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 153/199 (76%), Gaps = 15/199 (7%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
+ F+++ GG +VVDGG TELE HGADL+D LWSAKCL S+PHL+RKVHLDYL+AGA++
Sbjct: 14 LRGFVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADV 73
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
II+ASYQATI+GF+++GFS +E+E LLRRSV +A EAR + F G SS
Sbjct: 74 IISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRV-----------FAAEGDRSS 122
Query: 132 R----PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
R P LVAASVGSYGAY ADGSEYSGDYG +++ E LK FHRRR+ +LA +G DLIAF
Sbjct: 123 RRGRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAF 182
Query: 188 ETIPNKLEAKVFSKYVIIN 206
ETIPNKLEA+V+++ + N
Sbjct: 183 ETIPNKLEAQVYAELLEEN 201
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1
PE=1 SV=1
Length = 326
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 152/189 (80%), Gaps = 7/189 (3%)
Query: 9 TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAG 68
++ + D ++KCGG +VVDGGFAT+LE HGA +NDPLWSA L+ +P L+++VH++YL+AG
Sbjct: 7 SALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAG 66
Query: 69 ANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128
A+I++T+SYQATI GF ++G S EE+E+LL++SVE+A EAR+ ++++ K SG
Sbjct: 67 ADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK------VSGH 120
Query: 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE 188
+R LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FHRRR+ +L +G DL+AFE
Sbjct: 121 SYNR-ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFE 179
Query: 189 TIPNKLEAK 197
TIPNKLEA+
Sbjct: 180 TIPNKLEAQ 188
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var.
italica GN=HMT1 PE=1 SV=1
Length = 326
Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 151/194 (77%), Gaps = 7/194 (3%)
Query: 4 GSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLD 63
G ++ + D ++KCGG +VVDGGFAT+LE HGA +NDPLWSA L+ P L+++VH++
Sbjct: 2 GLEKKSALLEDLIEKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKDPELIKRVHME 61
Query: 64 YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDF 123
YL+AGA++++T+SYQATI GF ++G S EE+E+LL++SV++A EAR+ ++D+ K
Sbjct: 62 YLEAGADVVVTSSYQATIPGFLSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKT---- 117
Query: 124 TGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGAD 183
SG +R LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FHRRR+ +L + D
Sbjct: 118 --SGHSYNR-ALVAASIGSYGAYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPD 174
Query: 184 LIAFETIPNKLEAK 197
L+AFETIPNKLEA+
Sbjct: 175 LLAFETIPNKLEAQ 188
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1
Length = 323
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 153/209 (73%), Gaps = 17/209 (8%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
+ D + + GG +V+DGGFAT+LE GAD+NDPLWSA CL++ PHLV++VH+ YL+AGA++
Sbjct: 4 LEDLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADV 63
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
II++SYQATI GF A+G S EAE LLR SV++A EAR+ ++ ++ S
Sbjct: 64 IISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLR-----------KS 112
Query: 132 RPV----LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
+P+ LVAAS+GSYGAYLADGSEYSG YG ++ E LK+FHRRR+ +LA++G DLIAF
Sbjct: 113 KPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAF 172
Query: 188 ETIPNKLEAKVFSKYVIINQRKMLLKKFV 216
E IPN++EA+ + ++ + K+ + ++
Sbjct: 173 EAIPNQMEAQALVE--LLEEEKVQIPSWI 199
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain
168) GN=ybgG PE=4 SV=1
Length = 315
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 20/192 (10%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
V+DG ATELER G +LND LWSAK L+ P L+++VH DY AGA+ ITASYQ+T +G
Sbjct: 15 VLDGAMATELERKGCNLNDSLWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTFEG 74
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
F A+G S EA L+ SV IA EAR+ + W R++ ++AAS+G Y
Sbjct: 75 FAARGLSEAEARRLIELSVSIAAEARDEF--------WSLE-ENRLNRPKPIIAASIGPY 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203
GAYLADGSEY G+Y A+S + L EFHR R+ L +GAD++A ETIP EAK +
Sbjct: 126 GAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVR-- 181
Query: 204 IINQRKMLLKKF 215
LLK+F
Sbjct: 182 -------LLKEF 186
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12)
GN=mmuM PE=1 SV=2
Length = 310
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 116/185 (62%), Gaps = 14/185 (7%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG ATELE G +L D LWSAK LV +P L+R+VHLDY AGA ITASYQAT G
Sbjct: 18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAG 77
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
F A+G +++AL+ +SVE+A +ARE Y + + +LVA SVG Y
Sbjct: 78 FAARGLDEAQSKALIGKSVELARKAREAYL------------AENPQAGTLLVAGSVGPY 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203
GAYLADGSEY GDY S+E + FHR RV L ++GADL+A ET+PN E + ++ +
Sbjct: 126 GAYLADGSEYRGDYH--CSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELL 183
Query: 204 IINQR 208
R
Sbjct: 184 TAYPR 188
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MHT1 PE=1 SV=1
Length = 324
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 16 LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSP---------HLVRKVHLDYLD 66
++ G ++DGG TELE G ++N P+WSA S +V +++ D++
Sbjct: 11 VEHPGKVLILDGGQGTELENRGININSPVWSAAPFTSESFWEPSSQERKVVEEMYRDFMI 70
Query: 67 AGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGS 126
AGANI++T +YQA Q ++ S + A R + D+ + + +F G
Sbjct: 71 AGANILMTITYQANFQSI-SENTSIKTLAAYKR------------FLDKIVSFTREFIGE 117
Query: 127 GRISSRPVLVAASVGSYGAYLADGSEYSGDYGD-AVSLETLKEFHRRRVLILANSGADLI 185
R + S+G + A+++ EY+GDYG +++ F + N DLI
Sbjct: 118 ER------YLIGSIGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLI 169
Query: 186 AFETIPNKLEAK 197
FETIPN E K
Sbjct: 170 GFETIPNFHELK 181
>sp|Q08985|SAM4_YEAST Homocysteine S-methyltransferase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAM4 PE=1 SV=1
Length = 325
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 40/189 (21%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVS----------SPHLVRKVHLDYLDAGANIII 73
V+DGG TELE G + +P+WS +S + +V+++ D+L+AGA I++
Sbjct: 19 VLDGGQGTELENRGIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGAEILM 78
Query: 74 TASYQATIQGF-EAKGFST-EEAEALLRRSVEIA--CEAREIYYDRCMKDSWDFTGSGRI 129
T +YQ + + E T E LL R V+ + C + Y C
Sbjct: 79 TTTYQTSYKSVSENTPIRTLSEYNNLLNRIVDFSRNCIGEDKYLIGC------------- 125
Query: 130 SSRPVLVAASVGSYGAYLADGSEYSGDYG-DAVSLETLKEFHRRRVLILANSGADLIAFE 188
+G +GA++ E++GDYG + +++ + F + N DLI FE
Sbjct: 126 ----------IGPWGAHIC--REFTGDYGAEPENIDFYQYFKPQLENFNKNDKLDLIGFE 173
Query: 189 TIPNKLEAK 197
TIPN E K
Sbjct: 174 TIPNIHELK 182
>sp|P87138|YDM7_SCHPO Uncharacterized protein C57A7.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A7.07c PE=4 SV=2
Length = 308
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 24 VVDGGFATELERHGADLNDP-LWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQ--AT 80
++DGG L + +++ LW+++ LV P +V K H ++L +II T +YQ A+
Sbjct: 3 MLDGGSTAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQLDAS 61
Query: 81 IQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASV 140
I + +G ++ A S+ + ARE + +A +
Sbjct: 62 IYDEKVEGVPLKQVYA---NSIGLPVYARE-----------------HLGLPNKYIALCL 101
Query: 141 GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGA------DLIAFETIPNKL 194
GS+ A + EY Y E L FH+ R+ + S D IAFE++P+
Sbjct: 102 GSHAATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLPHVT 161
Query: 195 EAKVFSKYV 203
EA+V + +
Sbjct: 162 EAEVVCQLI 170
>sp|Q87L95|METH_VIBPA Methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=metH PE=3 SV=1
Length = 1226
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
++S P L++++H YL+AGA+I+ T ++ AT + +E + S E A + + E+A
Sbjct: 58 VLSQPQLIKEIHSAYLEAGADILETNTFNATTIAMADYEMESLSEEINFAAAKLAREVA- 116
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
D W + + +P VA +G + + + VS + L
Sbjct: 117 ------------DEW----TAKTPDKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAK 197
E + L GADLI ETI + L AK
Sbjct: 161 VEAYSESTRALIRGGADLILIETIFDTLNAK 191
>sp|Q5E814|METH_VIBF1 Methionine synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=metH PE=3 SV=1
Length = 1226
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++R +H YL+AGA+I+ T ++ AT + + E+L S EI EA
Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT-----TIAMADYDMESL---SEEINFEAA 110
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ R + D W + + ++P VA +G + + + VS + L E
Sbjct: 111 KLA--REVADKW----TEKTPNKPRYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEA 164
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAKVFS 200
+ L G+DLI ETI + L AK S
Sbjct: 165 YSESTRALIRGGSDLILIETIFDTLNAKACS 195
>sp|Q9AJQ8|METH_VIBFI Methionine synthase OS=Vibrio fischeri GN=metH PE=3 SV=1
Length = 1226
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++R +H YL+AGA+I+ T ++ AT + + E+L S EI EA
Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT-----TIAMADYDMESL---SEEINFEAA 110
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ R + D W + + ++P VA +G + + + VS + L E
Sbjct: 111 KLA--REVADKW----TEKTPNKPRYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEA 164
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAKVFS 200
+ L G+DLI ETI + L AK S
Sbjct: 165 YSESTRALIRGGSDLILIETIFDTLNAKACS 195
>sp|Q5XGM3|BHMT1_XENLA Betaine--homocysteine S-methyltransferase 1 OS=Xenopus laevis
GN=bhmt PE=2 SV=1
Length = 403
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AGAN++ T ++ A+ E
Sbjct: 23 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLE 81
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREI 111
+G AE + + V E+AC+ ARE+
Sbjct: 82 NRGNYV--AEKISGQKVNEVACDIAREV 107
>sp|Q95332|BHMT1_PIG Betaine--homocysteine S-methyltransferase 1 (Fragment) OS=Sus
scrofa GN=BHMT PE=1 SV=3
Length = 278
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
+G AE + + V E AC+ AR++ D D +G +S P
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>sp|Q9H2M3|BHMT2_HUMAN S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Homo
sapiens GN=BHMT2 PE=1 SV=1
Length = 363
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHL 62
+G G + + L+ G + DG F LE+ G + LW+ + ++ P VR++H+
Sbjct: 4 AGRPGAKKGILERLES-GEVVIGDGSFLITLEKRGY-VKAGLWTPEAVIEHPDAVRQLHM 61
Query: 63 DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSV 102
++L AG+N++ T ++ A+ E+K A L R V
Sbjct: 62 EFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREV 101
>sp|Q5RF32|BHMT2_PONAB S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Pongo
abelii GN=BHMT2 PE=2 SV=1
Length = 363
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHL 62
+G G + + L+ G + DG F LE+ G + LW+ + ++ P VR++H+
Sbjct: 4 AGHPGAKRGILERLES-GEVVIGDGSFLITLEKRGY-VKAGLWTPEAVIEHPDAVRQLHM 61
Query: 63 DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSV 102
++L AG+N++ T ++ A+ E+K A L R V
Sbjct: 62 EFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREV 101
>sp|Q5I597|BHMT1_BOVIN Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus GN=BHMT
PE=2 SV=1
Length = 407
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
+G AE + + V E AC+ AR++ D D +G +S P
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>sp|Q5M8Z0|BHMT1_XENTR Betaine--homocysteine S-methyltransferase 1 OS=Xenopus tropicalis
GN=bhmt PE=2 SV=1
Length = 403
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AGAN++ T ++ A+ E
Sbjct: 23 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLE 81
Query: 86 AKG 88
+G
Sbjct: 82 NRG 84
>sp|O35490|BHMT1_MOUSE Betaine--homocysteine S-methyltransferase 1 OS=Mus musculus GN=Bhmt
PE=2 SV=1
Length = 407
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
+G AE + + V E AC+ AR++ D D +G +S P
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>sp|O09171|BHMT1_RAT Betaine--homocysteine S-methyltransferase 1 OS=Rattus norvegicus
GN=Bhmt PE=1 SV=1
Length = 407
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
+G AE + + V E AC+ AR++ D D +G +S P
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metH PE=3 SV=1
Length = 1226
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P +++++H YL+AGA+I+ T ++ +T + ++ + S E A + + E+A
Sbjct: 58 VLTQPQIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSAEINFAAAKLAREVA- 116
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
D W + + SRP VA +G + + + V+ + L
Sbjct: 117 ------------DEW----TAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAK 197
E + L G+DLI ETI + L AK
Sbjct: 161 VEAYSESTRALIKGGSDLILIETIFDTLNAK 191
>sp|Q5RFG2|BHMT1_PONAB Betaine--homocysteine S-methyltransferase 1 OS=Pongo abelii
GN=BHMT PE=2 SV=1
Length = 406
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKG 88
+G
Sbjct: 85 NRG 87
>sp|Q93088|BHMT1_HUMAN Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens
GN=BHMT PE=1 SV=2
Length = 406
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKG 88
+G
Sbjct: 85 NRG 87
>sp|Q54P92|METH_DICDI Methionine synthase OS=Dictyostelium discoideum GN=mtr PE=3 SV=1
Length = 1260
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 24 VVDGGFATELERHGADLND-----------PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DG TE+++ ND L L+S PH++R++H YL+AGA+
Sbjct: 26 VLDGAMGTEIQKFKLKDNDYRGEEFKDFPHELGGNNDLLSLTQPHIIREIHCKYLEAGAD 85
Query: 71 IIITASYQATIQGFEAKGFSTEEAEALLRR-SVEIACEAREIYYDRCMKDSWDFTGSGRI 129
I T ++ I F + E L++R ++E A A+ + KD
Sbjct: 86 FIETNTFNGNI--FSQADYKMEH---LVKRINIESARLAKSACEEYTKKD---------- 130
Query: 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET 189
SRP V +VG + V + L + +V L G D+I ET
Sbjct: 131 PSRPRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQVEALVEGGIDVILVET 190
Query: 190 IPNKLEAK 197
+ + L K
Sbjct: 191 VFDSLNCK 198
>sp|Q68FT5|BHMT2_RAT S-methylmethionine--homocysteine S-methyltransferase BHMT2
OS=Rattus norvegicus GN=Bhmt2 PE=2 SV=1
Length = 363
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
V DGGF LE+ G + LW+ + +V P VR++H ++L AGA+++ T ++ A
Sbjct: 24 VGDGGFLFTLEKRGF-VKAGLWTPEAVVEYPSAVRQLHTEFLRAGADVLQTFTFSAAEDR 82
Query: 84 FEAK 87
E+K
Sbjct: 83 MESK 86
>sp|Q32LQ4|BHMT1_DANRE Betaine--homocysteine S-methyltransferase 1 OS=Danio rerio
GN=bhmt PE=2 SV=1
Length = 400
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 20 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQA 79
G + DGGF LE+ G P W+ + P VR++H ++L AG+N++ T ++ A
Sbjct: 17 GEVVIGDGGFVFALEKRGYVKAGP-WTPEAAAEHPEAVRQLHREFLRAGSNVMQTFTFYA 75
Query: 80 TIQGFEAKG 88
+ E +G
Sbjct: 76 SDDKLENRG 84
>sp|Q91WS4|BHMT2_MOUSE S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Mus
musculus GN=Bhmt2 PE=1 SV=2
Length = 363
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 7 GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
G+T L++ VV D GF LE+ G + LW+ + +V P VR++H ++
Sbjct: 5 GSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGF-VKAGLWTPEAVVEHPSAVRQLHTEF 63
Query: 65 LDAGANIIITASYQATIQGFEAK 87
L AGA+++ T ++ AT +K
Sbjct: 64 LRAGADVLQTFTFSATEDNMASK 86
>sp|Q7MHB1|METH_VIBVY Methionine synthase OS=Vibrio vulnificus (strain YJ016) GN=metH
PE=3 SV=1
Length = 1226
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P L++++H YL+AGA+I+ T ++ AT + ++ + S E
Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAMADYDMESLSEE-------------I 104
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
R D W + + ++P VA +G + + + VS + L
Sbjct: 105 NFAAAKLAREAADEW----TAKNPAKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAK 197
E + L G+DLI ETI + L AK
Sbjct: 161 VEAYSESTRALIRGGSDLILIETIFDTLNAK 191
>sp|Q8DCJ7|METH_VIBVU Methionine synthase OS=Vibrio vulnificus (strain CMCP6) GN=metH
PE=3 SV=1
Length = 1226
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P L++++H YL+AGA+I+ T ++ AT + ++ + S E
Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAMADYDMESLSEE-------------I 104
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
R D W + + ++P VA +G + + + VS + L
Sbjct: 105 NFAAARLAREAADEW----TAQNPAKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAK 197
E + L G+DLI ETI + L AK
Sbjct: 161 VEAYSESTRALIRGGSDLILIETIFDTLNAK 191
>sp|Q8EQU5|RIMP_OCEIH Ribosome maturation factor RimP OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rimP PE=3
SV=1
Length = 156
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 6 NGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCL-VSSPHLVRKV-HLD 63
G F+ ++ K GG +++ G +EL D +DP+ A L VSSP + R + +
Sbjct: 32 EGKNWFLRVYIDKEGGIDIMECGEVSELLSEKLDESDPITEAYFLEVSSPGVERPLKKKE 91
Query: 64 YLDA--GANIII--------TASYQATIQGFEAKGFSTEEAEALLRRSVEIA 105
DA G NI + + Y+ T+Q F+ + + E ++ VEI
Sbjct: 92 DFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTMEYKVKTRKKQVEIP 143
>sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=metH PE=3 SV=3
Length = 1227
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++ +H Y +AGA+II T ++ +T + AE
Sbjct: 57 VLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYRMESLSAE----------INYA 106
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
R D W + R +P VA +G + + + ++ + L
Sbjct: 107 AAKLARACADEW----TARTPEKPRFVAGVLGPTNRTASISPDVNDPAFRNITFDQLVAA 162
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK 197
+R L GADLI ET+ + L AK
Sbjct: 163 YRESTKALVEGGADLILIETVFDTLNAK 190
>sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE=2 SV=1
Length = 1265
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++RH G + D PL ++S P+++ ++H +YL AGA+
Sbjct: 32 VLDGGMGTMIQRHKLSEEDFRGQEFKDHARPLKGNNDILSITQPNVIYQIHKEYLLAGAD 91
Query: 71 IIITASYQAT 80
II T ++ +T
Sbjct: 92 IIETNTFSST 101
>sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (strain K12) GN=metH PE=1
SV=5
Length = 1227
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++ +H Y +AGA+II T ++ +T + + E+L S EI A
Sbjct: 57 VLSKPEVIAAIHNAYFEAGADIIETNTFNST-----TIAMADYQMESL---SAEINFAAA 108
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ D W + R +P VA +G + + + ++ + L
Sbjct: 109 KLAR--ACADEW----TARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAA 162
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK 197
+R L GADLI ET+ + L AK
Sbjct: 163 YRESTKALVEGGADLILIETVFDTLNAK 190
>sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=metH PE=3 SV=1
Length = 1234
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
L+S P +++ + YLDAGA+I+ T ++ AT G + E +VE A AR
Sbjct: 64 LLSRPDVIQAIEKAYLDAGADILETNTFNATQVSQADYGMQSLAYEL----NVEGARLAR 119
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ + + +P VA +G + + + V+ + L E
Sbjct: 120 QVADAK----------TAETPDKPRFVAGVLGPTSRTCSISPDVNNPGYRNVTFDELVEN 169
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK 197
+ L GADLI ETI + L AK
Sbjct: 170 YVEATRGLIEGGADLILIETIFDTLNAK 197
>sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=Mtr PE=2 SV=1
Length = 1253
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R+ G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 19 VLDGGMGTMIQRYKLSEENFQGQEFKDHSRPLKGNNDILSITQPDVIYQIHKEYLLAGAD 78
Query: 71 IIITASYQATI-----QGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTG 125
II T ++ +T G E + + A + R A EI TG
Sbjct: 79 IIETNTFSSTSIAQADYGLEHLAYRMNKCSADVARKA-----AEEITLQ---------TG 124
Query: 126 SGRISSRPVLVAASVGSYGAYLA-DGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADL 184
R VA S+G L+ S DY + ++ + L E ++ + L + G D+
Sbjct: 125 VKR------FVAGSLGPTNKTLSVSPSVERPDYRN-ITFDELVEAYQEQAKGLLDGGVDI 177
Query: 185 IAFETIPNKLEAK 197
+ ETI + AK
Sbjct: 178 LLIETIFDTANAK 190
>sp|O33465|METH_PSEPU Methionine synthase (Fragment) OS=Pseudomonas putida GN=metH PE=3
SV=1
Length = 607
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 24 VVDGGFAT-----ELERH---GADLNDPLWSAKC-------LVSSPHLVRKVHLDYLDAG 68
++DGG T LE H G D W + L+S P ++ + YLDAG
Sbjct: 21 ILDGGMGTMIQSYRLEEHDYRGTRFAD--WPSDVKGNNDLLLLSRPDVIAAIEKAYLDAG 78
Query: 69 ANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128
A+I+ T ++ AT G + + +VE A AR++ + ++
Sbjct: 79 ADILETNTFNATQISQADYGMES----LVYELNVEGARIARQVADAKTLE---------- 124
Query: 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE 188
+P VA +G + + + V+ + L E + L GADLI E
Sbjct: 125 TPDKPRFVAGVLGPTSRTCSISPDVNDPGYRNVTFDELVENYIEATRGLIEGGADLILIE 184
Query: 189 TIPNKLEAK 197
TI + L AK
Sbjct: 185 TIFDTLNAK 193
>sp|O06745|YITJ_BACSU Bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase OS=Bacillus subtilis (strain 168) GN=yitJ PE=2
SV=1
Length = 612
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 26 DGGFATELERHGADLNDPLWSAKCL----VSSPHLVRKVHLDYLDAGANIIITASYQATI 81
DG T L +G D +C +S P ++++H Y++AGANII T +Y A
Sbjct: 15 DGAMGTLLYSYGID--------RCFEELNISKPEEIQRIHKAYVEAGANIIQTNTYGANY 66
Query: 82 QGFEAKGFSTEEAEALLRRSVEIA 105
G ++ + + + +V+IA
Sbjct: 67 IKLSRHGLE-DDIKKMNQEAVKIA 89
>sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr PE=2 SV=1
Length = 1253
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R+ G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 19 VLDGGMGTMIQRYKLSEEHFQGQEFKDHSRPLKGNNDILSITQPDIIYQIHKEYLLAGAD 78
Query: 71 IIITASYQAT 80
II T ++ +T
Sbjct: 79 IIETNTFSST 88
>sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2
Length = 1265
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 32 VLDGGMGTMIQREKLNEEHFRGQEFKDHARPLKGNNDILSITQPDVIYQIHKEYLLAGAD 91
Query: 71 IIITASYQAT 80
II T ++ +T
Sbjct: 92 IIETNTFSST 101
>sp|Q4L3K3|RPOB_STAHJ DNA-directed RNA polymerase subunit beta OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=rpoB PE=3 SV=1
Length = 1183
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 61 HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
H+ D+GA ITA Y+ ++ E+K E L+RR VE E DR
Sbjct: 663 HVAARDSGA--AITAKYRGRVEHVESK-------EILVRRLVEENGTEHEGELDRYPLAK 713
Query: 121 WDFTGSGRI-SSRPVLVAASVGSYGAYLADGS 151
+ + +G + RP++ V Y LADG
Sbjct: 714 FKRSNTGTCYNQRPIVSVGDVVEYNEILADGP 745
>sp|Q0VQG3|DAPE_ALCBS Succinyl-diaminopimelate desuccinylase OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=dapE PE=3 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS 142
FSTE +A+LR VE + + YD W +G ++ R LV A+VG+
Sbjct: 258 FSTELTDAILRERVEAILDKHGLDYDL----QWTLSGQPFLTDRGALVDAAVGA 307
>sp|A8XY95|METH_CAEBR Probable methionine synthase OS=Caenorhabditis briggsae GN=nos-1
PE=3 SV=2
Length = 1273
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 24 VVDGGFATELERHGADLND-----------PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
++DG T ++R + +D PL L+S P ++ K+H YL+AGA+
Sbjct: 20 IIDGAMGTMIQREYMEEHDFRGEILKDHDKPLKGNNDLLSITRPDIIYKIHKLYLEAGAD 79
Query: 71 IIITASYQAT 80
I T ++ T
Sbjct: 80 FIETNTFSGT 89
>sp|P32352|ERG2_YEAST C-8 sterol isomerase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ERG2 PE=1 SV=1
Length = 222
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGA 145
A+G STE+ +R + +A + Y +R +K+ W F +G + +++ ASV
Sbjct: 50 AEGLSTEDLLQDVRDA--LASHYGDEYINRYVKEEWVFNNAGGAMGQMIILHASV----- 102
Query: 146 YLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVII 205
SEY +G AV E H G + A +P EA+V++ +
Sbjct: 103 -----SEYLILFGTAVGTEGHTGVHFADDYFTILHGTQIAA---LPYATEAEVYTPGMTH 154
Query: 206 NQRKMLLKKF 215
+ +K K++
Sbjct: 155 HLKKGYAKQY 164
>sp|Q835V2|RIMP_ENTFA Ribosome maturation factor RimP OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=rimP PE=3 SV=1
Length = 157
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 6 NGTTSFMTDFLQKCGGYSVVDGGFATEL--ERHGADLNDPLWSAKCL-VSSPHLVR--KV 60
G F+ F+ K GG + + F +E E+ A DP+ A L VSSP R K
Sbjct: 31 EGKNWFLRVFIDKEGGIDIEECAFVSEKLSEKLDAMDPDPIPQAYFLEVSSPGAERPLKK 90
Query: 61 HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDR 115
DY A I + YQA + +G L SV+I +E+ ++R
Sbjct: 91 ESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHLDSEQLTLSVKIKTRVKEMTFER 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,131,248
Number of Sequences: 539616
Number of extensions: 3249479
Number of successful extensions: 7798
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 7729
Number of HSP's gapped (non-prelim): 77
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)