Query 027947
Match_columns 216
No_of_seqs 136 out of 1073
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 2.2E-51 4.8E-56 368.4 23.7 206 10-216 10-216 (335)
2 PRK09485 mmuM homocysteine met 100.0 1.7E-49 3.7E-54 352.0 21.7 186 11-216 3-189 (304)
3 KOG1579 Homocysteine S-methylt 100.0 2.3E-47 4.9E-52 334.0 20.3 188 10-215 7-196 (317)
4 PF02574 S-methyl_trans: Homoc 100.0 1.6E-48 3.4E-53 345.2 5.0 176 22-216 1-183 (305)
5 COG2040 MHT1 Homocysteine/sele 100.0 1.8E-46 3.9E-51 324.5 16.8 174 20-216 8-181 (300)
6 PRK07534 methionine synthase I 100.0 7.7E-43 1.7E-47 313.2 21.0 173 11-216 4-178 (336)
7 COG0646 MetH Methionine syntha 100.0 2.4E-41 5.2E-46 293.9 18.3 180 10-214 6-194 (311)
8 PRK09490 metH B12-dependent me 100.0 7.3E-41 1.6E-45 336.9 21.0 189 10-216 9-217 (1229)
9 PRK08645 bifunctional homocyst 100.0 6E-40 1.3E-44 314.6 20.4 170 12-216 4-173 (612)
10 TIGR02082 metH 5-methyltetrahy 100.0 9.7E-40 2.1E-44 329.1 20.1 179 20-215 3-200 (1178)
11 cd00377 ICL_PEPM Members of th 93.9 1.2 2.5E-05 38.5 11.5 39 170-212 162-200 (243)
12 PRK15063 isocitrate lyase; Pro 93.7 1.1 2.4E-05 41.9 11.6 35 170-205 267-302 (428)
13 PRK11320 prpB 2-methylisocitra 92.4 2.4 5.1E-05 37.8 11.5 34 170-203 168-201 (292)
14 TIGR02317 prpB methylisocitrat 91.3 2.9 6.3E-05 37.1 10.7 34 170-203 163-196 (285)
15 COG2224 AceA Isocitrate lyase 90.7 1.9 4E-05 40.2 9.1 32 175-206 276-309 (433)
16 PF03437 BtpA: BtpA family; I 89.3 2 4.4E-05 37.6 7.8 32 162-193 23-54 (254)
17 PF13714 PEP_mutase: Phosphoen 89.2 7.9 0.00017 33.4 11.4 108 53-203 83-190 (238)
18 TIGR02320 PEP_mutase phosphoen 89.2 6.7 0.00015 34.8 11.2 43 170-212 171-215 (285)
19 COG0159 TrpA Tryptophan syntha 88.3 10 0.00022 33.5 11.5 118 48-212 22-152 (265)
20 TIGR00259 thylakoid_BtpA membr 87.1 3.7 8.1E-05 36.0 8.1 33 161-193 21-53 (257)
21 PRK00865 glutamate racemase; P 84.8 11 0.00024 32.7 10.0 50 161-213 47-96 (261)
22 COG0434 SgcQ Predicted TIM-bar 84.2 2.4 5.1E-05 37.0 5.3 31 162-192 28-58 (263)
23 COG5309 Exo-beta-1,3-glucanase 83.3 21 0.00046 31.7 10.9 33 161-193 253-285 (305)
24 CHL00200 trpA tryptophan synth 83.3 16 0.00035 32.0 10.4 38 174-212 112-149 (263)
25 PRK13111 trpA tryptophan synth 82.5 26 0.00056 30.6 11.3 38 174-212 110-147 (258)
26 COG2513 PrpB PEP phosphonomuta 82.2 1.6 3.5E-05 38.8 3.6 35 170-204 168-202 (289)
27 PF00701 DHDPS: Dihydrodipicol 82.1 33 0.00072 29.8 13.3 108 53-213 20-132 (289)
28 PRK05692 hydroxymethylglutaryl 82.0 27 0.00058 30.9 11.4 104 65-207 89-197 (287)
29 PLN02591 tryptophan synthase 81.9 18 0.00039 31.5 10.0 37 174-211 99-135 (250)
30 cd00952 CHBPH_aldolase Trans-o 81.6 38 0.00082 30.1 13.9 46 53-104 27-73 (309)
31 PLN02495 oxidoreductase, actin 80.6 23 0.0005 32.9 10.8 46 170-215 129-189 (385)
32 cd00958 DhnA Class I fructose- 80.5 15 0.00033 30.8 9.1 22 54-75 142-163 (235)
33 COG1831 Predicted metal-depend 79.0 46 0.001 29.6 11.5 135 42-210 41-187 (285)
34 cd06556 ICL_KPHMT Members of t 78.1 6.5 0.00014 34.0 6.0 64 134-202 126-189 (240)
35 cd08205 RuBisCO_IV_RLP Ribulos 78.1 44 0.00096 30.7 11.8 21 53-73 144-164 (367)
36 PLN02746 hydroxymethylglutaryl 76.4 62 0.0013 29.6 12.3 43 161-207 194-239 (347)
37 TIGR00262 trpA tryptophan synt 76.0 52 0.0011 28.5 11.5 38 173-211 107-144 (256)
38 cd06557 KPHMT-like Ketopantoat 75.8 25 0.00053 30.8 9.0 57 134-211 74-130 (254)
39 PF00682 HMGL-like: HMGL-like 75.5 47 0.001 27.8 13.6 114 52-208 64-180 (237)
40 PF01729 QRPTase_C: Quinolinat 75.0 8.3 0.00018 31.5 5.6 36 173-209 92-127 (169)
41 PRK00311 panB 3-methyl-2-oxobu 74.9 24 0.00052 31.0 8.8 56 135-211 78-133 (264)
42 cd00945 Aldolase_Class_I Class 74.5 41 0.00089 26.6 11.9 24 53-76 11-34 (201)
43 TIGR02319 CPEP_Pphonmut carbox 74.4 4.7 0.0001 36.0 4.3 34 170-203 167-200 (294)
44 PRK03170 dihydrodipicolinate s 73.7 61 0.0013 28.3 12.5 47 53-104 20-66 (292)
45 PF00478 IMPDH: IMP dehydrogen 73.6 13 0.00028 34.1 7.0 58 131-212 94-153 (352)
46 PRK00311 panB 3-methyl-2-oxobu 73.2 6.7 0.00014 34.5 4.9 40 162-203 156-195 (264)
47 cd06557 KPHMT-like Ketopantoat 72.9 6.8 0.00015 34.2 4.9 40 162-203 153-192 (254)
48 COG0826 Collagenase and relate 72.3 17 0.00037 33.2 7.5 91 65-211 23-116 (347)
49 TIGR01463 mtaA_cmuA methyltran 71.6 44 0.00096 29.7 10.0 56 49-109 163-229 (340)
50 PF00290 Trp_syntA: Tryptophan 71.5 61 0.0013 28.4 10.5 38 173-211 107-144 (259)
51 cd00408 DHDPS-like Dihydrodipi 70.7 69 0.0015 27.6 12.4 47 53-104 16-62 (281)
52 cd00950 DHDPS Dihydrodipicolin 70.6 70 0.0015 27.7 13.0 46 53-104 19-65 (284)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 70.5 75 0.0016 28.0 12.6 47 53-104 19-65 (294)
54 TIGR00674 dapA dihydrodipicoli 70.4 73 0.0016 27.7 12.7 46 53-104 17-63 (285)
55 PLN02424 ketopantoate hydroxym 69.9 32 0.00069 31.3 8.5 60 133-212 96-155 (332)
56 cd00954 NAL N-Acetylneuraminic 68.6 80 0.0017 27.5 12.3 22 53-74 19-41 (288)
57 PRK12999 pyruvate carboxylase; 68.5 66 0.0014 34.1 11.6 66 135-211 669-737 (1146)
58 PRK12581 oxaloacetate decarbox 68.5 62 0.0013 30.9 10.5 45 167-211 162-209 (468)
59 TIGR00222 panB 3-methyl-2-oxob 68.5 12 0.00025 33.0 5.4 41 162-204 155-195 (263)
60 cd04729 NanE N-acetylmannosami 68.4 68 0.0015 26.7 10.3 27 51-77 23-49 (219)
61 TIGR02321 Pphn_pyruv_hyd phosp 68.4 8.9 0.00019 34.1 4.6 41 170-212 168-209 (290)
62 PF03481 SUA5: Putative GTP-bi 68.3 9.7 0.00021 29.2 4.3 46 162-207 79-124 (125)
63 TIGR00683 nanA N-acetylneurami 66.5 91 0.002 27.4 13.1 46 53-104 19-66 (290)
64 PF07302 AroM: AroM protein; 65.9 21 0.00046 30.6 6.3 41 170-213 167-207 (221)
65 cd00951 KDGDH 5-dehydro-4-deox 65.8 93 0.002 27.2 12.8 46 53-104 19-65 (289)
66 PRK09490 metH B12-dependent me 64.5 1.3E+02 0.0028 32.3 12.8 109 55-212 160-273 (1229)
67 PRK08385 nicotinate-nucleotide 64.2 16 0.00034 32.4 5.3 35 172-207 193-227 (278)
68 PRK07259 dihydroorotate dehydr 63.8 85 0.0018 27.5 10.0 46 170-215 106-164 (301)
69 PLN02274 inosine-5'-monophosph 63.8 32 0.0007 33.0 7.8 57 132-212 235-293 (505)
70 TIGR01496 DHPS dihydropteroate 63.1 1E+02 0.0022 26.7 15.5 39 43-81 11-49 (257)
71 PF02515 CoA_transf_3: CoA-tra 62.9 43 0.00093 27.5 7.5 39 51-94 5-43 (191)
72 PRK06096 molybdenum transport 61.3 16 0.00035 32.4 4.9 33 172-205 200-232 (284)
73 cd00318 Phosphoglycerate_kinas 60.9 17 0.00037 33.9 5.2 66 2-72 195-263 (397)
74 PRK08645 bifunctional homocyst 60.7 1.7E+02 0.0038 28.6 12.9 105 54-212 120-228 (612)
75 PF02574 S-methyl_trans: Homoc 60.6 56 0.0012 28.7 8.3 112 53-212 129-244 (305)
76 TIGR03249 KdgD 5-dehydro-4-deo 60.1 1.2E+02 0.0026 26.6 13.1 21 53-73 24-44 (296)
77 PLN02417 dihydrodipicolinate s 59.3 1.2E+02 0.0026 26.4 12.6 47 53-104 20-66 (280)
78 PRK06498 isocitrate lyase; Pro 59.2 18 0.00038 34.8 5.0 29 178-206 342-371 (531)
79 PRK12331 oxaloacetate decarbox 58.3 1.3E+02 0.0029 28.4 10.7 44 168-211 154-200 (448)
80 COG0329 DapA Dihydrodipicolina 57.8 1.4E+02 0.003 26.5 13.1 21 53-73 23-43 (299)
81 TIGR00067 glut_race glutamate 57.2 48 0.001 28.6 7.1 52 157-213 37-90 (251)
82 PRK09250 fructose-bisphosphate 56.9 1.6E+02 0.0035 27.1 10.7 106 52-206 214-339 (348)
83 PF01180 DHO_dh: Dihydroorotat 56.1 24 0.00051 30.9 5.1 47 168-215 112-169 (295)
84 COG5564 Predicted TIM-barrel e 56.0 1.4E+02 0.003 26.1 9.3 85 21-110 123-219 (276)
85 PRK06843 inosine 5-monophospha 55.8 40 0.00086 31.5 6.7 58 131-212 139-198 (404)
86 COG1794 RacX Aspartate racemas 55.5 54 0.0012 28.3 6.9 94 88-212 9-102 (230)
87 PRK07896 nicotinate-nucleotide 55.1 25 0.00054 31.4 5.0 34 173-207 211-244 (289)
88 PRK05848 nicotinate-nucleotide 55.0 23 0.00051 31.2 4.8 32 173-205 194-225 (273)
89 TIGR02660 nifV_homocitr homoci 54.8 1.7E+02 0.0036 26.6 12.0 43 168-210 142-187 (365)
90 PF00248 Aldo_ket_red: Aldo/ke 54.7 64 0.0014 27.4 7.5 112 51-206 13-125 (283)
91 PRK15452 putative protease; Pr 53.2 2E+02 0.0044 27.2 11.0 104 51-214 10-116 (443)
92 TIGR02082 metH 5-methyltetrahy 52.8 2.6E+02 0.0055 30.0 12.6 109 55-212 144-257 (1178)
93 PRK12330 oxaloacetate decarbox 52.8 2.2E+02 0.0048 27.4 11.3 44 168-211 155-203 (499)
94 PRK00366 ispG 4-hydroxy-3-meth 52.5 51 0.0011 30.4 6.7 74 131-211 130-204 (360)
95 PLN02489 homocysteine S-methyl 52.4 1.8E+02 0.0039 26.3 12.3 106 54-212 162-271 (335)
96 TIGR00222 panB 3-methyl-2-oxob 52.2 93 0.002 27.4 8.1 58 133-212 76-133 (263)
97 TIGR03239 GarL 2-dehydro-3-deo 52.1 20 0.00044 31.0 3.9 33 173-205 76-108 (249)
98 PRK05286 dihydroorotate dehydr 51.9 1.8E+02 0.004 26.2 11.0 45 170-215 159-218 (344)
99 PRK12677 xylose isomerase; Pro 51.7 2E+02 0.0043 26.6 11.9 31 161-192 146-182 (384)
100 KOG2794 Delta-aminolevulinic a 51.3 13 0.00027 33.2 2.5 25 51-75 303-327 (340)
101 PRK13384 delta-aminolevulinic 51.3 13 0.00029 33.5 2.7 25 51-75 290-314 (322)
102 cd04823 ALAD_PBGS_aspartate_ri 51.1 13 0.00029 33.5 2.7 25 51-75 286-310 (320)
103 PRK04147 N-acetylneuraminate l 51.1 1.7E+02 0.0037 25.6 12.2 47 53-104 22-69 (293)
104 PRK05398 formyl-coenzyme A tra 50.9 74 0.0016 29.6 7.7 39 51-94 74-112 (416)
105 cd04824 eu_ALAD_PBGS_cysteine_ 50.6 14 0.0003 33.4 2.6 25 51-75 287-311 (320)
106 PRK11858 aksA trans-homoaconit 50.5 2E+02 0.0044 26.3 12.2 43 168-210 145-190 (378)
107 cd00384 ALAD_PBGS Porphobilino 50.5 14 0.0003 33.3 2.7 25 51-75 281-305 (314)
108 PLN03034 phosphoglycerate kina 50.5 31 0.00067 33.0 5.1 66 2-72 273-341 (481)
109 COG1856 Uncharacterized homolo 50.3 43 0.00092 29.2 5.5 30 98-146 204-233 (275)
110 COG0279 GmhA Phosphoheptose is 50.3 56 0.0012 27.0 5.9 75 130-207 40-136 (176)
111 PRK03620 5-dehydro-4-deoxygluc 50.3 1.8E+02 0.0039 25.6 12.6 21 53-73 26-46 (303)
112 PRK06978 nicotinate-nucleotide 50.1 27 0.00058 31.3 4.4 33 171-204 215-247 (294)
113 cd04724 Tryptophan_synthase_al 49.2 1.7E+02 0.0036 25.0 12.2 38 173-211 96-133 (242)
114 PRK10558 alpha-dehydro-beta-de 48.9 25 0.00053 30.6 3.9 33 173-205 83-115 (256)
115 PF02548 Pantoate_transf: Keto 48.8 1.9E+02 0.0041 25.5 9.5 58 133-211 77-134 (261)
116 PRK10128 2-keto-3-deoxy-L-rham 48.5 25 0.00054 30.9 4.0 33 172-204 81-113 (267)
117 PRK09485 mmuM homocysteine met 48.2 2E+02 0.0043 25.5 12.7 106 53-212 134-244 (304)
118 cd00377 ICL_PEPM Members of th 48.1 1.1E+02 0.0023 26.3 7.8 37 172-208 88-138 (243)
119 COG0167 PyrD Dihydroorotate de 47.9 2.1E+02 0.0046 25.8 10.1 40 37-78 8-48 (310)
120 PRK06559 nicotinate-nucleotide 47.9 29 0.00063 31.0 4.3 33 172-205 208-240 (290)
121 TIGR02090 LEU1_arch isopropylm 47.9 2.2E+02 0.0047 25.9 11.9 42 169-210 142-186 (363)
122 PRK14042 pyruvate carboxylase 47.8 2.9E+02 0.0062 27.3 12.4 44 168-211 154-200 (596)
123 cd07939 DRE_TIM_NifV Streptomy 47.7 1.8E+02 0.0039 24.9 12.4 43 168-210 139-184 (259)
124 PRK09016 quinolinate phosphori 47.6 30 0.00064 31.0 4.3 32 172-204 219-250 (296)
125 cd04726 KGPDC_HPS 3-Keto-L-gul 47.4 47 0.001 26.9 5.3 39 173-211 69-107 (202)
126 PRK05458 guanosine 5'-monophos 47.1 87 0.0019 28.4 7.3 43 171-213 99-145 (326)
127 cd04734 OYE_like_3_FMN Old yel 46.7 2.2E+02 0.0048 25.6 12.8 23 161-187 225-248 (343)
128 PRK14041 oxaloacetate decarbox 46.4 2.7E+02 0.0058 26.6 11.8 45 167-211 152-199 (467)
129 TIGR00035 asp_race aspartate r 46.3 50 0.0011 27.8 5.4 47 163-213 57-103 (229)
130 TIGR03855 NAD_NadX aspartate d 46.2 58 0.0013 27.9 5.8 40 168-208 48-90 (229)
131 cd04740 DHOD_1B_like Dihydroor 46.1 62 0.0013 28.2 6.1 47 169-215 103-161 (296)
132 PF00490 ALAD: Delta-aminolevu 45.9 17 0.00036 33.0 2.5 25 51-75 291-315 (324)
133 PRK06106 nicotinate-nucleotide 45.9 33 0.00072 30.4 4.4 31 173-204 206-236 (281)
134 PRK06543 nicotinate-nucleotide 45.8 34 0.00074 30.4 4.4 31 173-204 205-235 (281)
135 PRK14040 oxaloacetate decarbox 45.7 2.3E+02 0.0049 27.9 10.4 45 167-211 154-201 (593)
136 TIGR01108 oadA oxaloacetate de 45.6 3E+02 0.0066 26.9 12.3 44 168-211 149-195 (582)
137 cd07948 DRE_TIM_HCS Saccharomy 45.2 2.1E+02 0.0045 24.9 12.2 40 172-211 145-187 (262)
138 COG3623 SgaU Putative L-xylulo 45.2 1E+02 0.0022 27.2 7.0 103 54-193 53-159 (287)
139 TIGR02311 HpaI 2,4-dihydroxyhe 45.1 31 0.00066 29.8 4.0 33 173-205 76-108 (249)
140 TIGR01334 modD putative molybd 44.8 46 0.00099 29.5 5.0 33 172-205 199-231 (277)
141 cd07938 DRE_TIM_HMGL 3-hydroxy 44.6 2.1E+02 0.0046 24.9 12.2 39 169-207 150-191 (274)
142 PLN03231 putative alpha-galact 44.5 93 0.002 28.6 7.1 52 161-212 156-212 (357)
143 KOG1367 3-phosphoglycerate kin 44.5 33 0.00072 31.4 4.1 71 2-77 210-284 (416)
144 COG1646 Predicted phosphate-bi 44.2 47 0.001 28.9 4.8 43 170-212 30-74 (240)
145 PRK09283 delta-aminolevulinic 44.1 20 0.00044 32.5 2.7 25 51-75 289-313 (323)
146 cd02930 DCR_FMN 2,4-dienoyl-Co 43.6 2.5E+02 0.0053 25.3 11.5 95 87-207 125-237 (353)
147 PRK09282 pyruvate carboxylase 43.0 3.4E+02 0.0073 26.7 12.0 44 168-211 154-200 (592)
148 PRK02506 dihydroorotate dehydr 42.8 2.4E+02 0.0053 25.0 10.9 43 173-215 110-164 (310)
149 PRK13962 bifunctional phosphog 42.8 46 0.001 33.0 5.2 65 2-71 194-261 (645)
150 PF13653 GDPD_2: Glycerophosph 42.2 29 0.00063 20.3 2.3 16 60-75 12-27 (30)
151 PRK07226 fructose-bisphosphate 41.7 2.3E+02 0.005 24.4 9.1 23 53-75 158-180 (267)
152 PTZ00005 phosphoglycerate kina 41.2 53 0.0012 30.9 5.1 65 2-73 212-282 (417)
153 PRK07428 nicotinate-nucleotide 41.1 61 0.0013 28.8 5.3 32 173-205 208-239 (288)
154 PRK09389 (R)-citramalate synth 41.0 3.3E+02 0.0071 26.0 12.1 43 168-210 143-188 (488)
155 cd02933 OYE_like_FMN Old yello 41.0 2.7E+02 0.0059 25.1 10.7 23 161-187 238-260 (338)
156 COG0113 HemB Delta-aminolevuli 40.9 24 0.00052 31.9 2.6 25 51-75 294-318 (330)
157 PRK00073 pgk phosphoglycerate 40.3 41 0.00088 31.3 4.2 65 2-71 191-258 (389)
158 cd07947 DRE_TIM_Re_CS Clostrid 40.1 2.6E+02 0.0056 24.6 10.9 115 52-210 75-202 (279)
159 cd03465 URO-D_like The URO-D _ 39.5 2.6E+02 0.0056 24.4 11.5 48 57-109 170-217 (330)
160 PRK12344 putative alpha-isopro 39.2 3.6E+02 0.0079 26.0 11.7 109 62-210 92-203 (524)
161 PF14394 DUF4423: Domain of un 39.0 51 0.0011 26.9 4.2 34 53-86 93-136 (171)
162 PF06187 DUF993: Protein of un 38.9 1.6E+02 0.0035 27.1 7.6 28 160-187 124-151 (382)
163 PLN02270 phospholipase D alpha 38.8 1.7E+02 0.0036 30.0 8.4 107 57-189 497-621 (808)
164 PLN02282 phosphoglycerate kina 38.4 44 0.00095 31.3 4.1 70 2-78 198-278 (401)
165 PRK06252 methylcobalamin:coenz 38.0 2.8E+02 0.0062 24.4 10.9 52 50-106 164-226 (339)
166 PRK08185 hypothetical protein; 38.0 2.6E+02 0.0057 24.7 8.8 43 161-212 149-202 (283)
167 cd00953 KDG_aldolase KDG (2-ke 37.8 2.7E+02 0.0059 24.2 12.9 45 53-103 18-63 (279)
168 PRK06052 5-methyltetrahydropte 37.6 1.1E+02 0.0024 28.1 6.4 125 56-203 39-190 (344)
169 PF09370 TIM-br_sig_trns: TIM- 37.5 57 0.0012 28.9 4.4 36 171-206 160-207 (268)
170 TIGR01302 IMP_dehydrog inosine 37.3 1.6E+02 0.0034 27.7 7.7 44 170-213 225-270 (450)
171 PF01408 GFO_IDH_MocA: Oxidore 37.2 1.4E+02 0.003 21.6 6.0 40 169-209 74-115 (120)
172 cd06660 Aldo_ket_red Aldo-keto 37.0 2.6E+02 0.0056 23.7 8.8 110 53-207 27-140 (285)
173 TIGR02635 RhaI_grampos L-rhamn 36.7 1.6E+02 0.0035 27.2 7.5 34 149-186 139-175 (378)
174 PLN02424 ketopantoate hydroxym 36.6 63 0.0014 29.5 4.7 39 162-202 177-215 (332)
175 COG0796 MurI Glutamate racemas 36.5 3E+02 0.0066 24.3 9.3 49 161-212 47-95 (269)
176 TIGR01346 isocit_lyase isocitr 36.3 50 0.0011 32.0 4.2 27 180-206 378-405 (527)
177 PRK07565 dihydroorotate dehydr 36.3 3.1E+02 0.0068 24.4 11.5 45 171-215 117-172 (334)
178 cd02803 OYE_like_FMN_family Ol 36.1 3E+02 0.0065 24.1 12.0 22 161-186 225-246 (327)
179 PLN02892 isocitrate lyase 36.0 53 0.0012 32.1 4.3 27 180-206 399-426 (570)
180 COG0821 gcpE 1-hydroxy-2-methy 35.9 76 0.0016 29.1 5.0 44 169-214 37-80 (361)
181 COG1038 PycA Pyruvate carboxyl 35.6 78 0.0017 32.6 5.4 66 135-211 672-740 (1149)
182 TIGR03849 arch_ComA phosphosul 35.6 1.5E+02 0.0033 25.7 6.7 19 171-189 137-155 (237)
183 PRK12412 pyridoxal kinase; Rev 35.5 1.1E+02 0.0024 26.2 6.0 42 168-209 58-100 (268)
184 PRK07534 methionine synthase I 34.8 3.5E+02 0.0075 24.5 11.8 66 131-212 170-236 (336)
185 cd02810 DHOD_DHPD_FMN Dihydroo 34.7 3E+02 0.0064 23.7 9.3 26 52-77 108-133 (289)
186 cd08210 RLP_RrRLP Ribulose bis 34.7 3.7E+02 0.0079 24.7 10.2 21 53-73 139-159 (364)
187 smart00633 Glyco_10 Glycosyl h 34.5 2.9E+02 0.0063 23.5 8.9 46 167-213 135-187 (254)
188 PRK10605 N-ethylmaleimide redu 34.4 3.6E+02 0.0078 24.5 9.5 24 88-111 148-171 (362)
189 cd04747 OYE_like_5_FMN Old yel 34.2 3.7E+02 0.008 24.6 10.5 23 161-187 232-254 (361)
190 PRK12616 pyridoxal kinase; Rev 34.1 1.2E+02 0.0027 26.0 6.0 44 168-211 60-104 (270)
191 cd01572 QPRTase Quinolinate ph 33.7 61 0.0013 28.4 4.1 36 173-211 194-229 (268)
192 PF03447 NAD_binding_3: Homose 33.1 41 0.00089 24.9 2.6 26 52-77 67-92 (117)
193 PRK11430 putative CoA-transfer 32.5 2E+02 0.0043 26.5 7.4 39 51-94 78-116 (381)
194 cd03307 Mta_CmuA_like MtaA_Cmu 32.4 3.5E+02 0.0076 23.8 10.2 40 58-103 174-214 (326)
195 COG1646 Predicted phosphate-bi 32.0 67 0.0015 27.9 3.9 40 152-191 171-223 (240)
196 PRK00115 hemE uroporphyrinogen 31.7 3.8E+02 0.0081 23.9 9.8 54 49-109 169-233 (346)
197 PF01791 DeoC: DeoC/LacD famil 31.7 42 0.0009 28.4 2.7 25 53-77 144-168 (236)
198 PRK12457 2-dehydro-3-deoxyphos 31.6 50 0.0011 29.4 3.1 29 168-196 217-245 (281)
199 TIGR02663 nifX nitrogen fixati 31.4 1.1E+02 0.0025 23.0 4.8 53 131-212 63-115 (119)
200 cd02930 DCR_FMN 2,4-dienoyl-Co 31.3 3.9E+02 0.0085 24.0 12.6 23 161-187 221-243 (353)
201 PRK11177 phosphoenolpyruvate-p 31.1 1.1E+02 0.0023 30.0 5.6 39 167-205 367-408 (575)
202 PF01208 URO-D: Uroporphyrinog 30.8 3.7E+02 0.0081 23.6 10.2 54 50-110 166-230 (343)
203 TIGR03253 oxalate_frc formyl-C 30.6 2.4E+02 0.0051 26.2 7.6 39 51-94 73-111 (415)
204 TIGR00612 ispG_gcpE 1-hydroxy- 30.3 1.1E+02 0.0023 28.2 5.0 42 169-212 35-76 (346)
205 PRK05742 nicotinate-nucleotide 30.2 96 0.0021 27.4 4.7 32 172-204 200-231 (277)
206 cd04733 OYE_like_2_FMN Old yel 30.2 4E+02 0.0086 23.8 11.3 94 88-207 138-249 (338)
207 cd02810 DHOD_DHPD_FMN Dihydroo 30.0 1.5E+02 0.0034 25.5 6.0 46 170-215 113-169 (289)
208 COG5016 Pyruvate/oxaloacetate 30.0 1.4E+02 0.0031 28.2 5.9 46 167-212 155-203 (472)
209 PF00162 PGK: Phosphoglycerate 29.8 48 0.001 30.8 2.8 72 2-78 195-275 (384)
210 TIGR01235 pyruv_carbox pyruvat 29.5 93 0.002 33.0 5.2 66 135-211 667-735 (1143)
211 COG0157 NadC Nicotinate-nucleo 29.4 1E+02 0.0022 27.4 4.7 31 172-203 199-229 (280)
212 cd04733 OYE_like_2_FMN Old yel 29.3 4.1E+02 0.0089 23.7 10.5 28 55-82 35-62 (338)
213 PRK10200 putative racemase; Pr 29.3 3.4E+02 0.0073 23.0 7.8 46 164-213 58-103 (230)
214 PF09370 TIM-br_sig_trns: TIM- 29.2 4.1E+02 0.0088 23.6 9.3 136 22-206 118-265 (268)
215 PRK05198 2-dehydro-3-deoxyphos 28.5 61 0.0013 28.6 3.1 30 167-196 208-237 (264)
216 TIGR03128 RuMP_HxlA 3-hexulose 28.3 1.3E+02 0.0029 24.4 5.1 37 173-209 68-104 (206)
217 TIGR00097 HMP-P_kinase phospho 28.3 1.8E+02 0.0039 24.6 6.0 44 168-211 53-97 (254)
218 COG1902 NemA NADH:flavin oxido 28.2 3.1E+02 0.0067 25.2 7.8 95 88-208 138-251 (363)
219 PLN02716 nicotinate-nucleotide 28.2 98 0.0021 27.9 4.5 32 173-204 215-260 (308)
220 TIGR01362 KDO8P_synth 3-deoxy- 28.1 61 0.0013 28.5 3.1 29 168-196 201-229 (258)
221 cd02932 OYE_YqiM_FMN Old yello 27.9 4.3E+02 0.0094 23.5 12.6 23 161-187 238-260 (336)
222 PF10678 DUF2492: Protein of u 27.8 42 0.00091 24.1 1.7 31 3-33 43-73 (78)
223 TIGR00036 dapB dihydrodipicoli 27.6 1.6E+02 0.0035 25.5 5.6 46 168-214 79-124 (266)
224 PRK00366 ispG 4-hydroxy-3-meth 27.5 1.3E+02 0.0028 27.8 5.1 42 169-212 43-84 (360)
225 PRK07807 inosine 5-monophospha 27.4 4.4E+02 0.0096 25.1 9.0 23 55-77 226-248 (479)
226 TIGR03853 matur_matur probable 27.3 40 0.00086 24.2 1.4 31 3-33 41-71 (77)
227 PRK09912 L-glyceraldehyde 3-ph 27.1 4.5E+02 0.0098 23.4 10.8 117 53-207 41-160 (346)
228 PLN02826 dihydroorotate dehydr 26.8 4.6E+02 0.0099 24.5 8.8 54 55-111 276-337 (409)
229 PLN03033 2-dehydro-3-deoxyphos 26.7 73 0.0016 28.5 3.3 30 167-196 219-248 (290)
230 PRK02048 4-hydroxy-3-methylbut 26.7 1.4E+02 0.0029 29.6 5.4 42 170-212 43-88 (611)
231 TIGR00612 ispG_gcpE 1-hydroxy- 26.7 2.9E+02 0.0062 25.4 7.1 74 131-211 121-195 (346)
232 PRK03762 hypothetical protein; 26.7 71 0.0015 24.1 2.8 40 71-114 44-88 (103)
233 PRK08255 salicylyl-CoA 5-hydro 26.6 6.7E+02 0.015 25.2 10.6 23 161-187 635-657 (765)
234 COG0646 MetH Methionine syntha 26.5 4.9E+02 0.011 23.6 12.1 102 60-210 148-249 (311)
235 cd04738 DHOD_2_like Dihydrooro 26.5 4.6E+02 0.01 23.3 10.7 51 164-215 144-209 (327)
236 cd02931 ER_like_FMN Enoate red 26.5 5E+02 0.011 23.7 10.5 23 161-187 249-271 (382)
237 cd07945 DRE_TIM_CMS Leptospira 26.1 4.5E+02 0.0097 23.0 9.1 39 168-206 147-188 (280)
238 COG0673 MviM Predicted dehydro 26.1 1.4E+02 0.0031 25.9 5.2 38 169-207 79-118 (342)
239 cd04725 OMP_decarboxylase_like 26.0 3.9E+02 0.0084 22.2 9.1 28 51-78 59-86 (216)
240 COG1433 Uncharacterized conser 26.0 1.9E+02 0.004 22.4 5.1 38 131-198 65-102 (121)
241 cd01568 QPRTase_NadC Quinolina 25.8 1.1E+02 0.0024 26.7 4.4 34 177-211 197-230 (269)
242 cd07941 DRE_TIM_LeuA3 Desulfob 25.3 4.5E+02 0.0097 22.7 11.8 40 168-207 151-193 (273)
243 PRK13125 trpA tryptophan synth 24.7 1.8E+02 0.004 24.7 5.4 40 173-212 93-134 (244)
244 PRK10773 murF UDP-N-acetylmura 24.4 2.1E+02 0.0045 26.6 6.2 23 165-187 368-390 (453)
245 cd03174 DRE_TIM_metallolyase D 24.3 4.2E+02 0.0091 22.1 12.6 39 170-208 148-189 (265)
246 PLN02495 oxidoreductase, actin 24.3 4E+02 0.0087 24.7 7.9 39 43-81 115-153 (385)
247 cd04735 OYE_like_4_FMN Old yel 24.2 5.3E+02 0.011 23.2 10.8 23 161-187 232-254 (353)
248 PRK09432 metF 5,10-methylenete 24.1 2.5E+02 0.0053 24.9 6.2 40 165-204 252-291 (296)
249 cd01169 HMPP_kinase 4-amino-5- 24.0 2.5E+02 0.0053 23.2 6.0 42 170-211 56-98 (242)
250 PRK07475 hypothetical protein; 24.0 2.1E+02 0.0045 24.5 5.6 46 164-213 61-106 (245)
251 TIGR01417 PTS_I_fam phosphoeno 23.6 1.9E+02 0.0041 28.2 5.8 39 167-205 366-407 (565)
252 cd02940 DHPD_FMN Dihydropyrimi 23.5 2.6E+02 0.0056 24.5 6.3 46 170-215 115-175 (299)
253 PRK10558 alpha-dehydro-beta-de 23.4 1.9E+02 0.004 25.1 5.3 40 173-212 32-74 (256)
254 PRK05283 deoxyribose-phosphate 23.4 97 0.0021 27.2 3.5 29 49-77 141-169 (257)
255 TIGR01105 galF UTP-glucose-1-p 23.2 66 0.0014 28.5 2.4 46 21-70 5-50 (297)
256 PF04551 GcpE: GcpE protein; 23.2 1.4E+02 0.0031 27.5 4.6 42 170-212 33-78 (359)
257 PRK03525 crotonobetainyl-CoA:c 22.9 2E+02 0.0044 26.6 5.7 39 51-94 73-111 (405)
258 COG0420 SbcD DNA repair exonuc 22.9 3E+02 0.0065 24.9 6.8 51 162-212 21-79 (390)
259 PRK05567 inosine 5'-monophosph 22.8 1.9E+02 0.0041 27.5 5.5 44 171-214 230-275 (486)
260 PRK05826 pyruvate kinase; Prov 22.7 2E+02 0.0042 27.5 5.6 36 173-208 178-213 (465)
261 PRK00039 ruvC Holliday junctio 22.7 2.8E+02 0.0061 22.3 5.9 51 162-212 42-101 (164)
262 TIGR02810 agaZ_gatZ D-tagatose 22.3 6.7E+02 0.015 23.7 11.2 120 37-187 84-218 (420)
263 COG0329 DapA Dihydrodipicolina 22.1 2.9E+02 0.0062 24.5 6.3 48 161-212 22-77 (299)
264 PLN02711 Probable galactinol-- 22.0 78 0.0017 32.1 2.9 36 44-79 219-257 (777)
265 TIGR00677 fadh2_euk methylenet 22.0 2.2E+02 0.0047 25.0 5.5 40 165-204 237-276 (281)
266 cd02439 DMB-PRT_CobT Nicotinat 22.0 1.6E+02 0.0035 26.4 4.7 37 89-144 114-150 (315)
267 PRK00105 cobT nicotinate-nucle 21.9 1.9E+02 0.0041 26.4 5.1 37 89-144 130-166 (335)
268 PRK13302 putative L-aspartate 21.4 2E+02 0.0042 25.0 5.0 38 170-208 80-117 (271)
269 PRK00915 2-isopropylmalate syn 21.3 7.3E+02 0.016 23.8 13.5 111 53-207 77-191 (513)
270 PRK00278 trpC indole-3-glycero 21.2 2E+02 0.0043 24.9 5.0 39 173-211 125-164 (260)
271 PF03328 HpcH_HpaI: HpcH/HpaI 21.1 1.7E+02 0.0037 24.2 4.5 32 174-206 78-109 (221)
272 COG3836 HpcH 2,4-dihydroxyhept 21.0 1.4E+02 0.003 26.2 3.8 32 173-204 81-112 (255)
273 PF14454 Prok_Ub: Prokaryotic 21.0 93 0.002 21.5 2.3 25 159-183 22-46 (65)
274 COG0770 MurF UDP-N-acetylmuram 21.0 2.9E+02 0.0063 26.2 6.4 37 134-189 358-394 (451)
275 PF04677 CwfJ_C_1: Protein sim 20.9 1.6E+02 0.0035 22.5 3.9 29 162-190 66-94 (121)
276 cd00959 DeoC 2-deoxyribose-5-p 20.8 1.1E+02 0.0023 25.3 3.1 24 53-76 129-152 (203)
277 TIGR02147 Fsuc_second hypothet 20.8 1.4E+02 0.003 26.3 3.9 33 54-86 192-234 (271)
278 PRK01130 N-acetylmannosamine-6 20.8 1.4E+02 0.003 24.8 3.8 26 51-76 19-44 (221)
279 cd00739 DHPS DHPS subgroup of 20.7 3.8E+02 0.0082 23.2 6.6 22 162-183 144-165 (257)
280 TIGR02637 RhaS rhamnose ABC tr 20.5 2.8E+02 0.006 23.5 5.8 40 170-211 45-84 (302)
281 PF00724 Oxidored_FMN: NADH:fl 20.4 6.2E+02 0.013 22.6 9.8 30 55-84 36-65 (341)
282 TIGR03160 cobT_DBIPRT nicotina 20.4 1.9E+02 0.0041 26.3 4.8 37 89-144 130-166 (333)
283 PF13986 DUF4224: Domain of un 20.3 1.7E+02 0.0037 18.6 3.3 26 161-186 3-33 (47)
284 TIGR03239 GarL 2-dehydro-3-deo 20.3 2.5E+02 0.0053 24.3 5.3 40 173-212 25-67 (249)
285 PF13407 Peripla_BP_4: Peripla 20.2 1.6E+02 0.0035 24.1 4.2 41 170-212 44-84 (257)
286 cd00381 IMPDH IMPDH: The catal 20.1 2.8E+02 0.0062 24.8 5.9 43 170-212 95-139 (325)
287 PRK07475 hypothetical protein; 20.1 3.6E+02 0.0077 23.0 6.3 49 162-214 175-225 (245)
288 TIGR00078 nadC nicotinate-nucl 20.0 1.6E+02 0.0035 25.7 4.2 31 173-204 190-220 (265)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=2.2e-51 Score=368.39 Aligned_cols=206 Identities=67% Similarity=1.095 Sum_probs=180.9
Q ss_pred hHHHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCC
Q 027947 10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF 89 (216)
Q Consensus 10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~ 89 (216)
..|+++|++.++++||||||||+|+++|++...|+|++.+|+++||.|+++|++|++||||||+|||||+|+.+|.++|+
T Consensus 10 ~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~ 89 (335)
T PLN02489 10 SLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGL 89 (335)
T ss_pred HHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCC
Confidence 56788888655799999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHH
Q 027947 90 STEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169 (216)
Q Consensus 90 ~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~ 169 (216)
+.+++++++++||++|++|+++|.+++....+ .+.+....+++++|+|||||+|+++.+|+||+|+|++.+++++++++
T Consensus 90 ~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~ 168 (335)
T PLN02489 90 SREESETLLRKSVEIACEARDIFWDKCQKGST-SRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDF 168 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHH
Confidence 87889999999999999999887432110000 00000112457999999999999999999999999977899999999
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC-CcccccccC
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ-RKMLLKKFV 216 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~-~~~~~~~~~ 216 (216)
|++|+++|+++|||+|+|||||++.|++++++++++.. ++|++.+|.
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t 216 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFN 216 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 99999999999999999999999999999999999875 699999883
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.7e-49 Score=352.03 Aligned_cols=186 Identities=54% Similarity=0.827 Sum_probs=172.8
Q ss_pred HHHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCC
Q 027947 11 FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (216)
Q Consensus 11 ~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~ 90 (216)
.|+++|++ ++++|+||||||+|+++|++..+|+|++.+++++||.|+++|++|++||||||+|||||+|+.+|+++|++
T Consensus 3 ~~~~~l~~-~~~lilDGgmGT~L~~~g~~~~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~ 81 (304)
T PRK09485 3 PFKELLAQ-GPVLILDGALATELEARGCDLNDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS 81 (304)
T ss_pred hHHHHhcc-CCEEEEeChHHHHHHHcCCCCCCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC
Confidence 47888885 56999999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHH
Q 027947 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (216)
Q Consensus 91 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h 170 (216)
.++++++|++||+||++|+.++. ..+++|+|||||+|.++++|+||+|+|+ ++.++++++|
T Consensus 82 ~~~~~~l~~~av~lA~~a~~~~~-----------------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~ 142 (304)
T PRK09485 82 EAEAEELIRRSVELAKEARDEFW-----------------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFH 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHH
Confidence 78899999999999999997652 1268999999999999999999999984 7999999999
Q ss_pred HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh-CCcccccccC
Q 027947 171 RRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN-QRKMLLKKFV 216 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~-~~~~~~~~~~ 216 (216)
++|+++|.++|||+|+|||||++.|++++++++++. ..+|++.+|+
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~ 189 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFT 189 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999999999999999999999999965 3799999984
No 3
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=334.00 Aligned_cols=188 Identities=45% Similarity=0.699 Sum_probs=173.4
Q ss_pred hHHHHHHhccCCeEEEecchHHHHHHCCCC-CCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcC
Q 027947 10 SFMTDFLQKCGGYSVVDGGFATELERHGAD-LNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKG 88 (216)
Q Consensus 10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~-~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g 88 (216)
...+++++..++++|+||||||+|+++|.+ .+.|+|++.+++++||+|+++|++||+||||||.|||||++.+.+..+
T Consensus 7 ~~~~~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~- 85 (317)
T KOG1579|consen 7 KLKKDILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY- 85 (317)
T ss_pred hhhHHHHhccCcEEEEeChHHHHHHhhcccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh-
Confidence 444555556689999999999999999998 667999999999999999999999999999999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHH
Q 027947 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE 168 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~ 168 (216)
.+.++..+++++.+++|+.|++.+..+ .-||+||+||+|+++++|+||+|+|+++++++++++
T Consensus 86 ~~~~~~~el~~~s~~~a~~Are~~~~~-----------------~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~ 148 (317)
T KOG1579|consen 86 VEEEELIELYEKSVELADLARERLGEE-----------------TGYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYD 148 (317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccc-----------------cceeeeecccccceecCCcccccccccccCHHHHHH
Confidence 566789999999999999999987432 119999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh-CCccccccc
Q 027947 169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN-QRKMLLKKF 215 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~-~~~~~~~~~ 215 (216)
||++|++.|.++|||+|+|||+|+..||+++++++++. .++|+.++|
T Consensus 149 ~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~ 196 (317)
T KOG1579|consen 149 FFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISF 196 (317)
T ss_pred HHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999999999999999999997 778998887
No 4
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=1.6e-48 Score=345.18 Aligned_cols=176 Identities=51% Similarity=0.792 Sum_probs=137.2
Q ss_pred eEEEecchHHHHHHCCCCCCCcccccc-------ccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 22 YSVVDGGFATELERHGADLNDPLWSAK-------CLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 22 ~lllDGg~gT~L~~~g~~~~~~~ws~~-------~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
|+||||||||+|+++|.+..+++|++. +++++|++|+++|++|++||||||+|||||+|+.+|.++|++.+.+
T Consensus 1 ililDGgmGT~L~~~g~~~~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 80 (305)
T PF02574_consen 1 ILILDGGMGTELERRGLDLNDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEA 80 (305)
T ss_dssp -CTT--EEHHCCHHHHHHHCTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCH
T ss_pred CEEeehhhHHHHHhCCcCccccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHH
Confidence 579999999999999998877888744 6678999999999999999999999999999999999999987667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027947 95 EALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRV 174 (216)
Q Consensus 95 ~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi 174 (216)
+++|++||++||+|++.|. ++++++|+|||||+|++++ |+||.|+|. .++++++++|++|+
T Consensus 81 ~~l~~~av~lA~~a~~~~~----------------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~ 141 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYG----------------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQA 141 (305)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc----------------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHH
Confidence 9999999999999997763 2456999999999999999 999999985 69999999999999
Q ss_pred HHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947 175 LILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV 216 (216)
Q Consensus 175 ~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~ 216 (216)
++|.++|||+|+|||||++.|++++++++++...+|+..+|.
T Consensus 142 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~ 183 (305)
T PF02574_consen 142 EALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFS 183 (305)
T ss_dssp HHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-
T ss_pred HHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccc
Confidence 999999999999999999999999999999966789998884
No 5
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=324.53 Aligned_cols=174 Identities=51% Similarity=0.782 Sum_probs=163.6
Q ss_pred CCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHH
Q 027947 20 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLR 99 (216)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~ 99 (216)
..++||||||+|||++||.+..+|+||+.+++++||+|+++|.+|++||||||+|+|||+++..+... .+.++.+++++
T Consensus 8 ~~vliLDGG~~tELe~rG~~l~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~~~~l~~ 86 (300)
T COG2040 8 LSVLILDGGLATELERRGCDLSDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDEAKQLIR 86 (300)
T ss_pred CCEEEecCchhHHHHhcCCCCCchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999887 77789999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 027947 100 RSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN 179 (216)
Q Consensus 100 ~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~ 179 (216)
.+|+||++||+.|.. ....|+|||||||+++++ ||+|+|+ .+.+.++.||++|+++|.+
T Consensus 87 ~sv~la~~ard~~g~-----------------~~~~iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~~fh~~rie~l~~ 145 (300)
T COG2040 87 RSVELARAARDAYGE-----------------ENQNIAGSLGPYGAALAD--EYRGDYG--ASQDALYKFHRPRIEALNE 145 (300)
T ss_pred HHHHHHHHHHHHhcc-----------------cccccceeccchhhhcCh--hhcCccC--ccHHHHHHHHHHHHHHHHh
Confidence 999999999999853 234599999999999988 9999996 5888899999999999999
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947 180 SGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV 216 (216)
Q Consensus 180 ~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~ 216 (216)
+|||+|.+||+|++.|++++++++++. ++|.-++|.
T Consensus 146 ag~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISfT 181 (300)
T COG2040 146 AGADLLACETLPNITEAEAIVQLVQEF-SKPAWISFT 181 (300)
T ss_pred CCCcEEeecccCChHHHHHHHHHHHHh-CCceEEEEE
Confidence 999999999999999999999999999 799999883
No 6
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=7.7e-43 Score=313.19 Aligned_cols=173 Identities=26% Similarity=0.369 Sum_probs=155.6
Q ss_pred HHHHHHhccCCeEEEecchHHHHHHCCCCCC--CccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcC
Q 027947 11 FMTDFLQKCGGYSVVDGGFATELERHGADLN--DPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKG 88 (216)
Q Consensus 11 ~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~--~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g 88 (216)
.|+++|++ ++++||||||||+|+++|++.. .++|+ +++||+|+++|++|++||||||+|||||+|+.+|..+|
T Consensus 4 ~~~~~l~~-~~ililDGgmGTeL~~~G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~ 78 (336)
T PRK07534 4 ALSDLLAE-RGVLLADGATGTNLFNMGLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHD 78 (336)
T ss_pred HHHHHHhc-CCEEEEECHHHHHHHHCCCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcC
Confidence 58889985 6799999999999999999876 47998 89999999999999999999999999999999998887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHH
Q 027947 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE 168 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~ 168 (216)
. .++++++|++||+||++|++++ +++++|+|||||+|+++.+ ++ .++.+++++
T Consensus 79 ~-~~~~~~l~~~av~lAr~a~~~~------------------~~~~~VaGsIGP~g~~l~~-------~~-~~~~~e~~~ 131 (336)
T PRK07534 79 A-QDRVHELNRAAAEIAREVADKA------------------GRKVIVAGSVGPTGEIMEP-------MG-ALTHALAVE 131 (336)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHhc------------------CCccEEEEecCCCccccCC-------CC-CCCHHHHHH
Confidence 4 5789999999999999998653 3478999999999998765 22 268899999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947 169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV 216 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~ 216 (216)
+|++|+++|.++|||+|+|||||++.|++++++++++. .+|++.+|.
T Consensus 132 ~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~-~~Pv~vSft 178 (336)
T PRK07534 132 AFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA-GMPWCGTMS 178 (336)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEEE
Confidence 99999999999999999999999999999999999986 699999984
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=293.87 Aligned_cols=180 Identities=28% Similarity=0.339 Sum_probs=156.9
Q ss_pred hHHHHHHhccCCeEEEecchHHHHHHCCCCCCC----ccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHH
Q 027947 10 SFMTDFLQKCGGYSVVDGGFATELERHGADLND----PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85 (216)
Q Consensus 10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~----~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~ 85 (216)
..|.+.|+ ++|||+||||||+|++.|++..+ .-.+..+++++||.|.+||++|++||||||.||||++|+.+++
T Consensus 6 ~~l~~~l~--~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~la 83 (311)
T COG0646 6 TQLREALK--ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLA 83 (311)
T ss_pred HHHHHHHH--cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHh
Confidence 45778888 69999999999999999987541 1123455699999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHH
Q 027947 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLET 165 (216)
Q Consensus 86 ~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee 165 (216)
++++. +++.+||++|++|||+++++|. ..++.||+|||||.+..+.. +|++ .+++++
T Consensus 84 dy~le-d~v~~in~~aa~iAR~aA~~~~----------------~~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~ 140 (311)
T COG0646 84 DYGLE-DKVYEINQKAARIARRAADEAG----------------DPKPRFVAGSIGPTNKTLSI----SPDF--AVTFDE 140 (311)
T ss_pred hhChH-HHHHHHHHHHHHHHHHHHhhcC----------------CCCceEEEEeccCcCCcCCc----CCcc--cccHHH
Confidence 99997 6899999999999999998863 12689999999999975542 2222 489999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCC-----cccccc
Q 027947 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQR-----KMLLKK 214 (216)
Q Consensus 166 ~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~-----~~~~~~ 214 (216)
+++.|++|++.|++.|||+|++||+.++.|+|+++.++++..+ +||.++
T Consensus 141 l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s 194 (311)
T COG0646 141 LVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMIS 194 (311)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEE
Confidence 9999999999999999999999999999999999999999875 998865
No 8
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=7.3e-41 Score=336.88 Aligned_cols=189 Identities=24% Similarity=0.319 Sum_probs=166.7
Q ss_pred hHHHHHHhccCCeEEEecchHHHHHHCCCCCC---C---cccc-------ccccCCChHHHHHHHHHHHHhcCCeeeccc
Q 027947 10 SFMTDFLQKCGGYSVVDGGFATELERHGADLN---D---PLWS-------AKCLVSSPHLVRKVHLDYLDAGANIIITAS 76 (216)
Q Consensus 10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~---~---~~ws-------~~~ll~~pe~V~~iH~~Yl~AGadiI~TnT 76 (216)
..|++.|+ ++++||||||||+|+++|++.. + ++|+ ..+++++||+|++||++|++||||||+|||
T Consensus 9 ~~l~~~L~--~riLIlDGAMGT~Lq~~gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNT 86 (1229)
T PRK09490 9 AQLRALLA--ERILVLDGAMGTMIQRYKLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNT 86 (1229)
T ss_pred HHHHHHHc--CCeEEEECcchHHHHHcCCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCC
Confidence 45889998 5899999999999999998632 2 5565 367899999999999999999999999999
Q ss_pred cccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccC--cCCCCCCC
Q 027947 77 YQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAY--LADGSEYS 154 (216)
Q Consensus 77 y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~--l~~gseY~ 154 (216)
|++|+.+|..+|++ +.++++|++|++|||+|+++|..++ ++++++|||||||+|.. +.|++||.
T Consensus 87 F~a~~~~L~~ygl~-~~~~eln~~av~LAreAa~~~~~~~-------------~~~~~~VAGSIGP~g~~~sl~p~~e~p 152 (1229)
T PRK09490 87 FNATTIAQADYGME-SLVYELNFAAARLAREAADEWTAKT-------------PDKPRFVAGVLGPTNRTASISPDVNDP 152 (1229)
T ss_pred CCCCHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCceEEEEecCCCCcccccCCCcccc
Confidence 99999999999997 6789999999999999998874321 24579999999999964 56889998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh-----CCcccccccC
Q 027947 155 GDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN-----QRKMLLKKFV 216 (216)
Q Consensus 155 g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~-----~~~~~~~~~~ 216 (216)
| |+ .+++++++++|++|+++|+++|||+|++|||+++.|+++++.++++. .++|++.+|.
T Consensus 153 g-~~-~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T 217 (1229)
T PRK09490 153 G-FR-NVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGT 217 (1229)
T ss_pred c-cc-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Confidence 8 55 48999999999999999999999999999999999999999999986 4789999873
No 9
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=6e-40 Score=314.55 Aligned_cols=170 Identities=25% Similarity=0.387 Sum_probs=154.7
Q ss_pred HHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCH
Q 027947 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFST 91 (216)
Q Consensus 12 l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~ 91 (216)
|++.|+ ++++||||||||+|+++|++...++ +.+++++||.|+++|++|++||||||+|||||+|+.+|.++|++
T Consensus 4 ~~~~l~--~~~lilDGgmGT~L~~~G~~~~~~~--~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~- 78 (612)
T PRK08645 4 LLERLK--ERVLIADGAMGTLLYSRGVPLDRCF--EELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLE- 78 (612)
T ss_pred HHHHhc--CCeEEEECHHHHHHHHcCCCCCCCh--HHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCch-
Confidence 677787 5899999999999999999876542 66789999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHH
Q 027947 92 EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHR 171 (216)
Q Consensus 92 ~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~ 171 (216)
+++.+++++||+||++|++ ++++|+|||||+|++ ++|+. ++.++++++|+
T Consensus 79 ~~~~~l~~~av~lAr~a~~---------------------~~~~VagsiGP~g~~--------~~~~~-~~~~~~~~~~~ 128 (612)
T PRK08645 79 DKVKEINRAAVRLAREAAG---------------------DDVYVAGTIGPIGGR--------GPLGD-ISLEEIRREFR 128 (612)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CCCeEEEeCCCCCCC--------CCCCC-CCHHHHHHHHH
Confidence 6799999999999999973 368999999999995 34654 78999999999
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV 216 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~ 216 (216)
+|++.|.++|||+|++||||++.|++++++++++...+|+..+|.
T Consensus 129 ~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~ 173 (612)
T PRK08645 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVA 173 (612)
T ss_pred HHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 999999999999999999999999999999999987799999884
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=9.7e-40 Score=329.06 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=160.0
Q ss_pred CCeEEEecchHHHHHHCCCCCCCcccc------------ccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhc
Q 027947 20 GGYSVVDGGFATELERHGADLNDPLWS------------AKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (216)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~~ws------------~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~ 87 (216)
++++||||||||+|+++|++..++.|+ +.+++++||.|+++|++|++||||||+||||++|+.+|..+
T Consensus 3 ~rilvlDGamGT~Lq~~gl~~~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~y 82 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQADY 82 (1178)
T ss_pred CceEEEEChhHHHHHhCCCCccccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHhhC
Confidence 589999999999999999998888895 66789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCc--CCCCCCCCCCCCCCCHHH
Q 027947 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYL--ADGSEYSGDYGDAVSLET 165 (216)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l--~~gseY~g~y~~~~s~ee 165 (216)
|++ +++.++|++|+++||+|++.|.. .++++++|||||||+|..+ .|+.+|.| |++ +++++
T Consensus 83 g~~-~~~~eln~~av~lAr~Aa~~~~~--------------~~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~~-~t~de 145 (1178)
T TIGR02082 83 DLE-DLIYDLNFKGAKLARAVADEFTL--------------TPEKPRFVAGSMGPTNKTATLSPDVERPG-FRN-VTYDE 145 (1178)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhhcc--------------cCCCceEEEEEeCCCCCCccCCCccccCc-cCC-CCHHH
Confidence 996 67999999999999999987632 1245799999999999854 34455554 764 89999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh-----CCccccccc
Q 027947 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN-----QRKMLLKKF 215 (216)
Q Consensus 166 ~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~-----~~~~~~~~~ 215 (216)
++++|++|+++|+++|||+|++|||+++.|+++++.++++. .++|++.+|
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~ 200 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISG 200 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 99999999999999999999999999999999999999985 579999883
No 11
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.87 E-value=1.2 Score=38.49 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
--+|+++..++|+|++++++..+.+|++.+++. .+.|++
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~----~~~Pl~ 200 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA----PDVPLN 200 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc----CCCCEE
Confidence 345689999999999999999999888887776 346654
No 12
>PRK15063 isocitrate lyase; Provisional
Probab=93.67 E-value=1.1 Score=41.94 Aligned_cols=35 Identities=37% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCEEEEec-CCCHHHHHHHHHHHHH
Q 027947 170 HRRRVLILANSGADLIAFET-IPNKLEAKVFSKYVII 205 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~a~~~ 205 (216)
--.|..++.+ |+|+|++|| .|++.|++.+++.++.
T Consensus 267 AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 267 AIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 3456778888 999999998 9999999999999875
No 13
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.45 E-value=2.4 Score=37.85 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
.-+|.++..++|+|+|++|.+.+..|++.+++.+
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~ 201 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV 201 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc
Confidence 4567899999999999999999999999888766
No 14
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.28 E-value=2.9 Score=37.15 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
--+|.++..++|+|++++|.+.+..|++.+++.+
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 4567899999999999999999999988877765
No 15
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=90.73 E-value=1.9 Score=40.17 Aligned_cols=32 Identities=34% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHhC-CCCEEEEec-CCCHHHHHHHHHHHHHh
Q 027947 175 LILANS-GADLIAFET-IPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 175 ~~l~~~-gvD~l~~ET-~p~~~Ea~a~~~a~~~~ 206 (216)
+.++-+ -.|+||+|| -|++.+++...+++++.
T Consensus 276 r~lA~ApyaDl~W~ET~~Pdle~ak~Fae~Ih~~ 309 (433)
T COG2224 276 RGLAYAPYADLLWCETSTPDLEEARQFAEAIHAK 309 (433)
T ss_pred HHHhcCcccceEEEecCCCCHHHHHHHHHHHHHh
Confidence 344333 259999997 68999999999999884
No 16
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=89.29 E-value=2 Score=37.56 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCH
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (216)
+.+++.++-.+-++.|.++|+|.|++|.+.+.
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 89999999999999999999999999998865
No 17
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=89.21 E-value=7.9 Score=33.43 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
+|.-|.+.-+.|.+||+--|.---.+++.. ...-++.++ ...=++.|+++++ ..
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~~--~~~l~~~ee----~~~kI~Aa~~a~~--------------------~~ 136 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGHG--GKQLVSPEE----MVAKIRAAVDARR--------------------DP 136 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTTS--TT-B--HHH----HHHHHHHHHHHHS--------------------ST
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCCC--CCceeCHHH----HHHHHHHHHHhcc--------------------CC
Confidence 388999999999999987444222233310 011123332 2223444455542 12
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
..+|.+-.--+. ...+-.+.--+|.++..++|+|+|.++.+.+..|++.+++.+
T Consensus 137 ~~~I~ARTDa~~-----------------~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 137 DFVIIARTDAFL-----------------RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV 190 (238)
T ss_dssp TSEEEEEECHHC-----------------HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH
T ss_pred eEEEEEeccccc-----------------cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 355555211110 023444455678999999999999999999999987777776
No 18
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=89.18 E-value=6.7 Score=34.81 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCEEEEec-CCCHHHHHHHHHHHHHh-CCcccc
Q 027947 170 HRRRVLILANSGADLIAFET-IPNKLEAKVFSKYVIIN-QRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~a~~~~-~~~~~~ 212 (216)
--+|+++..++|+|+++++. .++..|++.+++.++.. .+.|++
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 44568999999999999996 69999999988887631 234554
No 19
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.32 E-value=10 Score=33.45 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=70.8
Q ss_pred cccCCCh--HHHHHHHHHHHHhcCCeeecc-----------ccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 027947 48 KCLVSSP--HLVRKVHLDYLDAGANIIITA-----------SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYD 114 (216)
Q Consensus 48 ~~ll~~p--e~V~~iH~~Yl~AGadiI~Tn-----------Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~ 114 (216)
+...-+| |...++-+.-+++|||+|.-- |=|.+..+.-+.|++. .+..++++++++..
T Consensus 22 yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~-------~~~lel~~~~r~~~-- 92 (265)
T COG0159 22 YVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTL-------EDTLELVEEIRAKG-- 92 (265)
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHhcC--
Confidence 3334444 678888888999999998731 2233333333344442 45566777776432
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHH
Q 027947 115 RCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKL 194 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~ 194 (216)
...|+.+-+ -|+..+. | -+.+| ++.+.++|||.+++=-+| ++
T Consensus 93 ---------------~~~Pivlm~---Y~Npi~~--------~-------Gie~F----~~~~~~~GvdGlivpDLP-~e 134 (265)
T COG0159 93 ---------------VKVPIVLMT---YYNPIFN--------Y-------GIEKF----LRRAKEAGVDGLLVPDLP-PE 134 (265)
T ss_pred ---------------CCCCEEEEE---eccHHHH--------h-------hHHHH----HHHHHHcCCCEEEeCCCC-hH
Confidence 223444333 3322111 1 11223 455677899999999988 67
Q ss_pred HHHHHHHHHHHhCCcccc
Q 027947 195 EAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 195 Ea~a~~~a~~~~~~~~~~ 212 (216)
|...+..++++++-.|++
T Consensus 135 e~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 135 ESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHHcCCcEEE
Confidence 878888888888766654
No 20
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=87.12 E-value=3.7 Score=35.97 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCH
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (216)
.+.+++.+.-.+=+++|.++|||.|++|.+.+.
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~ 53 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFDA 53 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 478999999999999999999999999998774
No 21
>PRK00865 glutamate racemase; Provisional
Probab=84.78 E-value=11 Score=32.67 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccccc
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
-|.+++.++-.+.++.|.+.|+|++++=..... ..+++.+|+..+.|++.
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~---~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS---AVALPDLRERYDIPVVG 96 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH---HHHHHHHHHhCCCCEEe
Confidence 689999999999999999999999998655422 12456666666677764
No 22
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=84.20 E-value=2.4 Score=36.97 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPN 192 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~ 192 (216)
+.+++.+.-.+-+..|.++|+|.+++|.+-+
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD 58 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGD 58 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCC
Confidence 7899999998899999999999999998754
No 23
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=83.32 E-value=21 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCH
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (216)
.+.+....+.++.+.+|...|+|.++||+|.+.
T Consensus 253 pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 253 PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 578889999999999999999999999999864
No 24
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=83.31 E-value=16 Score=31.96 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 174 VLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
++.+.++|||.+++=-+| .+|....++.+++++..+++
T Consensus 112 ~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 666788999999999988 47899999999998866653
No 25
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.52 E-value=26 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 174 VLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
++.+.++|||.+++=-+| ++|+...+.++++++-.+++
T Consensus 110 ~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 110 AADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEE
Confidence 666788899999998888 57999999999988866654
No 26
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=82.22 E-value=1.6 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
--+|+++.+++|+|+|..|-+.+..|.+.++++++
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~ 202 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC
Confidence 44578899999999999999999999999999987
No 27
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=82.10 E-value=33 Score=29.82 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeecc-ccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLDYLDAGANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (216)
|.+.+++.-+-++++|++-|..+ |-+ - -..++.++-.++.+.+++.+ .+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstG-E-----~~~Lt~~Er~~l~~~~~~~~------------------------~~ 69 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTG-E-----FYSLTDEERKELLEIVVEAA------------------------AG 69 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTT-T-----GGGS-HHHHHHHHHHHHHHH------------------------TT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc-c-----cccCCHHHHHHHHHHHHHHc------------------------cC
Confidence 45678888888889999955543 322 1 12245556666666555432 12
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec----CCCHHHHHHHHHHHHHhC
Q 027947 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET----~p~~~Ea~a~~~a~~~~~ 207 (216)
+-..|+| +|.. +.++..+. ++...+.|+|.+++-. -++-+++..-.+.+.+..
T Consensus 70 ~~~vi~g-v~~~------------------st~~~i~~----a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 70 RVPVIAG-VGAN------------------STEEAIEL----ARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp SSEEEEE-EESS------------------SHHHHHHH----HHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS
T ss_pred ceEEEec-Ccch------------------hHHHHHHH----HHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhc
Confidence 2223444 4432 34444443 5566678888887642 136667776666666777
Q ss_pred Cccccc
Q 027947 208 RKMLLK 213 (216)
Q Consensus 208 ~~~~~~ 213 (216)
+.|++.
T Consensus 127 ~~pi~i 132 (289)
T PF00701_consen 127 DLPIII 132 (289)
T ss_dssp SSEEEE
T ss_pred CCCEEE
Confidence 777753
No 28
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=82.00 E-value=27 Score=30.90 Aligned_cols=104 Identities=23% Similarity=0.150 Sum_probs=60.1
Q ss_pred HHhcCCeeeccccccCHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCC-
Q 027947 65 LDAGANIIITASYQATIQG-FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS- 142 (216)
Q Consensus 65 l~AGadiI~TnTy~a~~~~-l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP- 142 (216)
+++|.+.|... +.+|... ....+.+.++..+....+|+.|++. + ..|.+++..
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~----------------------g--~~v~~~i~~~ 143 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQA----------------------G--VRVRGYVSCV 143 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----------------------C--CEEEEEEEEE
Confidence 36788866554 3344332 2345666566555666666666542 1 233333332
Q ss_pred cccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCC--CHHHHHHHHHHHHHhC
Q 027947 143 YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKVFSKYVIINQ 207 (216)
Q Consensus 143 ~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~a~~~~~ 207 (216)
++. ||.+ ..+. +++.+.++.+.+.|+|.|.+- |+- .+.++...++.+++.-
T Consensus 144 ~~~------~~~~----~~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 144 LGC------PYEG----EVPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred ecC------CCCC----CCCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 111 1222 1344 456666888889999998765 433 6788888888888753
No 29
>PLN02591 tryptophan synthase
Probab=81.87 E-value=18 Score=31.49 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 174 VLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++.+.++|||.+++=-+| ++|....+..+++++-.++
T Consensus 99 ~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEE
Confidence 566778899999998888 5888889999988875554
No 30
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.63 E-value=38 Score=30.12 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHhcCCeee-ccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIII-TASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~-TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
+.+.++++-+.++++|++-|. .-|.+=. .-++.++-+++++.+++.
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~------~~Lt~eEr~~v~~~~~~~ 73 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGEC------ATLTWEEKQAFVATVVET 73 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccc------hhCCHHHHHHHHHHHHHH
Confidence 456788888888899998544 4444322 124556666777766664
No 31
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=80.62 E-value=23 Score=32.86 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCEEEEec-C--------------CCHHHHHHHHHHHHHhCCccccccc
Q 027947 170 HRRRVLILANSGADLIAFET-I--------------PNKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~--------------p~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
+.+.++.+.++|+|.|=+-. . .+.+-+..+++++++..+.||+-|.
T Consensus 129 ~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 129 WEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 44446677788999987642 2 3445677888999998889998774
No 32
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=80.54 E-value=15 Score=30.83 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhcCCeeecc
Q 027947 54 PHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 54 pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++.+.+.-+.+.++|||+|.|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 4667766666778888888885
No 33
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=79.05 E-value=46 Score=29.56 Aligned_cols=135 Identities=17% Similarity=0.151 Sum_probs=80.0
Q ss_pred CccccccccCCChHH---HHHHHHHHHHhcCC------eeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027947 42 DPLWSAKCLVSSPHL---VRKVHLDYLDAGAN------IIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIY 112 (216)
Q Consensus 42 ~~~ws~~~ll~~pe~---V~~iH~~Yl~AGad------iI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~ 112 (216)
-|+|+-..--..++. +.+.|....++.-. ...---+-+-...|.++|.+++++.+.++.|+++|++.+.++
T Consensus 41 lps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg 120 (285)
T COG1831 41 LPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEG 120 (285)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhcc
Confidence 478885444445554 45566666655311 111222333445677778777889999999999999988653
Q ss_pred HhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCC
Q 027947 113 YDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN-SGADLIAFETIP 191 (216)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~-~gvD~l~~ET~p 191 (216)
.+ =.||=.|. +.| .+|.+.....++-...++.- ..+|+-+.=-..
T Consensus 121 --------------------~a---vaiGEvGr---------PHy--pVs~~v~~~~n~vl~~a~elA~dvdc~vqLHte 166 (285)
T COG1831 121 --------------------KA---VAIGEVGR---------PHY--PVSEEVWEASNEVLEYAMELAKDVDCAVQLHTE 166 (285)
T ss_pred --------------------ce---eeeeccCC---------CCC--CCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 11 13555554 346 35766666655555555533 346665433223
Q ss_pred --CHHHHHHHHHHHHHhCCcc
Q 027947 192 --NKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 192 --~~~Ea~a~~~a~~~~~~~~ 210 (216)
+..+...+-+.+++.+.+|
T Consensus 167 s~~~~~~~~i~~~ak~~G~~~ 187 (285)
T COG1831 167 SLDEETYEEIAEMAKEAGIKP 187 (285)
T ss_pred CCChHHHHHHHHHHHHhCCCc
Confidence 3445888899999988433
No 34
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=78.12 E-value=6.5 Score=34.01 Aligned_cols=64 Identities=27% Similarity=0.159 Sum_probs=40.3
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHH
Q 027947 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKY 202 (216)
Q Consensus 134 ~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a 202 (216)
++|.+=+|-+...+..-.-|.+. + .+.+.+ +-.-+|.+++.++|+|+|++|.+ +.++++.+.+.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~-~--~~~~~~-~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~ 189 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQ-Y--RGDEAG-EQLIADALAYAPAGADLIVMECV-PVELAKQITEA 189 (240)
T ss_pred CeEEEEeCCchhhhhccCCceee-c--cCHHHH-HHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh
Confidence 56767666544322111112332 1 234444 34667899999999999999987 78887777665
No 35
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=78.11 E-value=44 Score=30.66 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHhcCCeee
Q 027947 53 SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~ 73 (216)
+|+...++-..++.+|+|.|.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ik 164 (367)
T cd08205 144 SPEELAELAYELALGGIDLIK 164 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeee
Confidence 578899999999999999885
No 36
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=76.45 E-value=62 Score=29.61 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhC
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~ 207 (216)
.+.+.+.+ .++.+.+.|+|-|.+= |+ -++.++..+++.+++.-
T Consensus 194 ~~~~~l~~----~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 194 VPPSKVAY----VAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 45554444 4777888999988664 43 36788899999988754
No 37
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=76.05 E-value=52 Score=28.55 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
-++.+.++|||.+++=-.|. +|....++.+++.+..++
T Consensus 107 f~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADLPL-EESGDLVEAAKKHGVKPI 144 (256)
T ss_pred HHHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHCCCcEE
Confidence 36777889999998887774 788888888888875554
No 38
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=75.79 E-value=25 Score=30.75 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=37.6
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 134 ~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+|.+.+ |||.+ . .+.+++... .++.+.++|++.+-+|-- .|....++++.+.+ .||
T Consensus 74 p~viaD~-~fg~y-----------~--~~~~~av~~---a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~ag-ipV 130 (254)
T cd06557 74 ALVVADM-PFGSY-----------Q--TSPEQALRN---AARLMKEAGADAVKLEGG---AEVAETIRALVDAG-IPV 130 (254)
T ss_pred CeEEEeC-CCCcc-----------c--CCHHHHHHH---HHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcC-CCe
Confidence 3455777 77763 2 245655443 455666699999999985 47777788887755 444
No 39
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=75.55 E-value=47 Score=27.80 Aligned_cols=114 Identities=21% Similarity=0.167 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027947 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (216)
Q Consensus 52 ~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (216)
-.++.++........+|+++|....-......-...+.+.++..+....+++.|++. +
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~----------------------g 121 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL----------------------G 121 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT----------------------T
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc----------------------C
Confidence 456778887777788999988765433322333455666554444445555554432 1
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cCC--CHHHHHHHHHHHHHhCC
Q 027947 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKVFSKYVIINQR 208 (216)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~a~~~~~~ 208 (216)
.. | ++++--. + ..+.+++.++ ++.+.+.|+|.|.+- |+- .+.++.-++..+++.-.
T Consensus 122 ~~--v--~~~~~~~---------~----~~~~~~~~~~----~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 122 YE--V--AFGCEDA---------S----RTDPEELLEL----AEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp SE--E--EEEETTT---------G----GSSHHHHHHH----HHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred Cc--e--EeCcccc---------c----cccHHHHHHH----HHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 22 2 2333111 1 2355555544 777777899988776 554 67788888888887654
No 40
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=75.03 E-value=8.3 Score=31.55 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
+++..+++|+|.|.+.+|+ +.+++.+++.+++....
T Consensus 92 e~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR 127 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc
Confidence 4455566899999999985 79999999999876644
No 41
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=74.91 E-value=24 Score=31.03 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=34.9
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
+|.+.+ |||.+ . .+.+++... .++.+.++|++.+-+|-- .|....++++.+.+ .||
T Consensus 78 ~vvaD~-pfg~y-----------~--~~~~~av~~---a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~ag-IpV 133 (264)
T PRK00311 78 LVVADM-PFGSY-----------Q--ASPEQALRN---AGRLMKEAGAHAVKLEGG---EEVAETIKRLVERG-IPV 133 (264)
T ss_pred cEEEeC-CCCCc-----------c--CCHHHHHHH---HHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCC-CCE
Confidence 455777 77653 1 255543332 355566699999999985 46666677776554 554
No 42
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=74.47 E-value=41 Score=26.64 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccc
Q 027947 53 SPHLVRKVHLDYLDAGANIIITAS 76 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnT 76 (216)
+.+.++++.+..+++|++.|..+-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 788899999999999999877664
No 43
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=74.41 E-value=4.7 Score=36.02 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
--+|.++..++|+|+|++|.+.+..|++.+++.+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI 200 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc
Confidence 4557899999999999999999999988888765
No 44
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=73.70 E-value=61 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+-+++.|++-|..|--.. + -.-++.++-.++++.+++.
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~G--E---~~~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTG--E---SPTLTHEEHEELIRAVVEA 66 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCC--c---cccCCHHHHHHHHHHHHHH
Confidence 446777777777889998666432211 1 1123445555555544443
No 45
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=73.61 E-value=13 Score=34.10 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHHHHHHHhC-C
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKVFSKYVIINQ-R 208 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~a~~~~~-~ 208 (216)
..+.+|+.++||..+ ..++++.|+++|||+|++-+-. +.......++.+|+.- +
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 457899999999643 4568999999999999998544 4444555666666654 3
Q ss_pred cccc
Q 027947 209 KMLL 212 (216)
Q Consensus 209 ~~~~ 212 (216)
.||+
T Consensus 150 ~~vi 153 (352)
T PF00478_consen 150 VPVI 153 (352)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 5543
No 46
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=73.16 E-value=6.7 Score=34.50 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
+.+++ +--.++++++.++|+|+|++|-+|+ .+++.+.+.+
T Consensus 156 t~~~a-~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l 195 (264)
T PRK00311 156 DEEAA-EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEAL 195 (264)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC
Confidence 44444 4455689999999999999999987 6666666554
No 47
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=72.95 E-value=6.8 Score=34.21 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
+.+++ +--.++++++.++|+|+|.+|-+|+ .+++.+.+.+
T Consensus 153 t~~~a-~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v 192 (254)
T cd06557 153 TEEEA-ERLLEDALALEEAGAFALVLECVPA-ELAKEITEAL 192 (254)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC
Confidence 34444 4455689999999999999999985 5666665554
No 48
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=17 Score=33.17 Aligned_cols=91 Identities=23% Similarity=0.240 Sum_probs=55.8
Q ss_pred HHhcCCeee-ccc-cccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCC
Q 027947 65 LDAGANIII-TAS-YQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS 142 (216)
Q Consensus 65 l~AGadiI~-TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP 142 (216)
+++|||.|- ..+ |.+.... ..++.++ ++.+|++|+++ +++++|+...=+
T Consensus 23 i~~GADaVY~G~~~~~~R~~a---~nfs~~~----l~e~i~~ah~~----------------------gkk~~V~~N~~~ 73 (347)
T COG0826 23 IAAGADAVYIGEKEFGLRRRA---LNFSVED----LAEAVELAHSA----------------------GKKVYVAVNTLL 73 (347)
T ss_pred HHcCCCEEEeCCccccccccc---ccCCHHH----HHHHHHHHHHc----------------------CCeEEEEecccc
Confidence 678999665 333 5443321 3466443 67778887763 467899875544
Q ss_pred cccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC-Cccc
Q 027947 143 YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ-RKML 211 (216)
Q Consensus 143 ~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~-~~~~ 211 (216)
... ..+. ..+.++.|.+.|||.|++=- .+++..+++.. +.|+
T Consensus 74 ~~~----------------~~~~----~~~~l~~l~e~GvDaviv~D-------pg~i~l~~e~~p~l~i 116 (347)
T COG0826 74 HND----------------ELET----LERYLDRLVELGVDAVIVAD-------PGLIMLARERGPDLPI 116 (347)
T ss_pred ccc----------------hhhH----HHHHHHHHHHcCCCEEEEcC-------HHHHHHHHHhCCCCcE
Confidence 322 1122 45568889999999999533 35666666654 4444
No 49
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=71.59 E-value=44 Score=29.70 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=30.9
Q ss_pred ccCCChHHH-----------HHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 027947 49 CLVSSPHLV-----------RKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109 (216)
Q Consensus 49 ~ll~~pe~V-----------~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~ 109 (216)
.+.++||.+ .+..+.++++|||+|....=.++. .-++++..+++.....+-..+..
T Consensus 163 ~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~-----~~lsp~~f~e~~~p~~k~i~~~i 229 (340)
T TIGR01463 163 WISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASS-----DLISPETYKEFGLPYQKRLFAYI 229 (340)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCc-----cccCHHHHHHHHHHHHHHHHHHH
Confidence 346788744 445667778999987654421221 12355555665555544444443
No 50
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=71.48 E-value=61 Score=28.38 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
-++.+.++|||.+++=-+| .+|......++++++-.++
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCCeEE
Confidence 3566777889999888887 5677788888887764443
No 51
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.65 E-value=69 Score=27.58 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+-.++.|++-|..+--.. + -..++.++-.++++.+++.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstG--E---~~~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTG--E---APTLTDEERKEVIEAVVEA 62 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc--c---cccCCHHHHHHHHHHHHHH
Confidence 456777777777788999655332111 1 1224445555665555543
No 52
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.62 E-value=70 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeecc-ccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+-++++|++-|..+ |-+ + -..++.++-+++++.+++.
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstG---E---~~~lt~~Er~~l~~~~~~~ 65 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTG---E---SPTLSDEEHEAVIEAVVEA 65 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc---c---hhhCCHHHHHHHHHHHHHH
Confidence 45667777777788999976655 221 1 1224445556665555543
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=70.51 E-value=75 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
+.+.+++.-+-+++.|++-|..+--..-. .-++.++-.++++.+++.
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~-----~~Ls~~Er~~l~~~~~~~ 65 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEP-----GSLTLEERKQAIENAIDQ 65 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccc-----ccCCHHHHHHHHHHHHHH
Confidence 45677777777888998855433221111 123445555565555543
No 54
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.42 E-value=73 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeecc-ccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+.++++|++-|..+ |-+ + -.-++.++-.++++.+++.
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstG---E---~~~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTG---E---SPTLSHEEHKKVIEFVVDL 63 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCc---c---cccCCHHHHHHHHHHHHHH
Confidence 34566666666778898866543 321 1 1123445555555555443
No 55
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=69.94 E-value=32 Score=31.35 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=35.7
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
..+|.+.+ |+|. |. .+.+++... -.+.+.++|+|.+=+|--. .+...+++.+.+.+ .||.
T Consensus 96 ~a~vVaDm-PfgS-----------Y~--~s~e~av~n---A~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~G-IPV~ 155 (332)
T PLN02424 96 RPLLVGDL-PFGS-----------YE--SSTDQAVES---AVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEAG-IAVM 155 (332)
T ss_pred CCEEEeCC-CCCC-----------CC--CCHHHHHHH---HHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHcC-CCEE
Confidence 45677666 6665 32 356655544 3455567999999999753 33344555555444 5554
No 56
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=68.60 E-value=80 Score=27.54 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHh-cCCeeec
Q 027947 53 SPHLVRKVHLDYLDA-GANIIIT 74 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~A-GadiI~T 74 (216)
|.+.+++.-+.++++ |++-|..
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~ 41 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYV 41 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE
Confidence 446677777777888 9986543
No 57
>PRK12999 pyruvate carboxylase; Reviewed
Probab=68.53 E-value=66 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+-++++..|+.+.+ +++.| +. +||.+.++.+.+.|+|.|.+=-+- ...++..++.++++.-+.|+
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~~----~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi 737 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----DL----DYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPI 737 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----CH----HHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeE
Confidence 345677788776643 22222 32 578888999999999999886543 67888889999988665654
No 58
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=68.51 E-value=62 Score=30.88 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+||.+.++.+.+.|+|.|.+--+. .+.++...+.++++..+.|+
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi 209 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPL 209 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeE
Confidence 4678888999999999999887443 67888889999988665554
No 59
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=68.50 E-value=12 Score=33.00 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
+.+++. --.++++++.++|+|.|++|-+| ...++.+.+.+.
T Consensus 155 t~~~a~-~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~ 195 (263)
T TIGR00222 155 DEEAAK-KLLEDALALEEAGAQLLVLECVP-VELAAKITEALA 195 (263)
T ss_pred CHHHHH-HHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCC
Confidence 445444 45668899999999999999999 466666655543
No 60
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=68.41 E-value=68 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecccc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
+.+++.+.++.+.|.++|+..+.-+++
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~~~~ 49 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRANGV 49 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEcCCH
Confidence 678889999999999999998775333
No 61
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=68.39 E-value=8.9 Score=34.15 Aligned_cols=41 Identities=24% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCEEEEec-CCCHHHHHHHHHHHHHhCCcccc
Q 027947 170 HRRRVLILANSGADLIAFET-IPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
--+|+++..++|+|+|.+|. ..+..|++.+++.+. ...|++
T Consensus 168 AI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~--~p~pv~ 209 (290)
T TIGR02321 168 AVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP--GKVPLV 209 (290)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC--CCCCeE
Confidence 45578999999999999997 589999988888663 234553
No 62
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=68.34 E-value=9.7 Score=29.23 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~ 207 (216)
+.+++....-..++.+-+.|+|.|++|.+|.-.+..|+..-+++..
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~RAA 124 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRRAA 124 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHHhc
Confidence 5566655555578888888999999999998888889888887753
No 63
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.52 E-value=91 Score=27.37 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHhc-CCeeecc-ccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAG-ANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AG-adiI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+.++++| ++-|..+ |-+=. .-++.++-.++++.+++.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~------~~Lt~eEr~~~~~~~~~~ 66 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGEN------FMLSTEEKKEIFRIAKDE 66 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccc------ccCCHHHHHHHHHHHHHH
Confidence 4567777777788999 9855433 32211 123445555665555554
No 64
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=65.85 E-value=21 Score=30.62 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
....++.|.+.|+|+|++..|..-.+.+..+ ++...+||+-
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~---~~~~g~PVlL 207 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRDIV---QRALGKPVLL 207 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHH---HHHhCCCEEe
Confidence 3344788899999999999999998877654 5556688764
No 65
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=65.79 E-value=93 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHhcCCeee-ccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIII-TASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~-TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
+.+.++++-+.+++.|++-|. .-|-+=. .-++.++-.++++.+++.
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~------~~Ls~eEr~~l~~~~~~~ 65 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEF------FSLTPDEYAQVVRAAVEE 65 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCc------ccCCHHHHHHHHHHHHHH
Confidence 456788888888899998554 3342211 123445555665555554
No 66
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=64.47 E-value=1.3e+02 Score=32.27 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=69.9
Q ss_pred HHHHHHHHH----HHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 027947 55 HLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (216)
Q Consensus 55 e~V~~iH~~----Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (216)
+.+++.|++ ++++|+|+|.-=|+.-. .++ ++++..++++.++. ..
T Consensus 160 del~~~y~eQi~~L~e~GVDllliETi~d~-----------~Ea----kAal~a~~~~~~~~----------------~~ 208 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIETIFDT-----------LNA----KAAIFAVEEVFEEL----------------GV 208 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeeCCH-----------HHH----HHHHHHHHHHHhhc----------------CC
Confidence 566666654 44678999988887532 122 24444444443221 13
Q ss_pred CCCeEEEEecC-CcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 131 SRPVLVAASVG-SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 131 ~~~~~VaGsiG-P~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
+.|++|..++- ..|..+ +| .+.+.+ +..+...++|.|.+-.-....++..+++-+.+..+.
T Consensus 209 ~lPv~vS~T~~d~~Gr~l-sG----------~~~ea~-------~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~ 270 (1229)
T PRK09490 209 RLPVMISGTITDASGRTL-SG----------QTTEAF-------WNSLRHAKPLSIGLNCALGADELRPYVEELSRIADT 270 (1229)
T ss_pred CCeEEEEEEEECCCCccC-CC----------CcHHHH-------HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCC
Confidence 46999999984 355443 22 244333 333456799999999887899999999999888777
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
|+.
T Consensus 271 pi~ 273 (1229)
T PRK09490 271 YVS 273 (1229)
T ss_pred eEE
Confidence 764
No 67
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.21 E-value=16 Score=32.43 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~ 207 (216)
+|+...+++|+|.|++.+|+ +.+++.++..+++..
T Consensus 193 eea~~a~~agaDiI~LDn~~-~e~l~~~v~~l~~~~ 227 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNMT-PEEIREVIEALKREG 227 (278)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHHhcC
Confidence 45556678999999999995 889999999888755
No 68
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=63.82 E-value=85 Score=27.48 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCC-CCEEEE------------ecCCCHHHHHHHHHHHHHhCCccccccc
Q 027947 170 HRRRVLILANSG-ADLIAF------------ETIPNKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 170 h~~qi~~l~~~g-vD~l~~------------ET~p~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
|...++.+.++| +|.|=+ .-..+...+..+++++++..+.||.-|.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl 164 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKL 164 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 455577777888 898844 2233456778888888887778887664
No 69
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=63.76 E-value=32 Score=32.97 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=39.6
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHHHHHHHhC-Cc
Q 027947 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKVFSKYVIINQ-RK 209 (216)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~a~~~~~-~~ 209 (216)
.+.+|++++|+..+ ..+|+++|+++|||+|.+-+-. .-......++.+|+.. +.
T Consensus 235 ~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~ 290 (505)
T PLN02274 235 GKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPEL 290 (505)
T ss_pred CCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCC
Confidence 46778888887432 3478999999999999998843 2233346777887753 35
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
+++
T Consensus 291 ~vi 293 (505)
T PLN02274 291 DVI 293 (505)
T ss_pred cEE
Confidence 543
No 70
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=63.08 E-value=1e+02 Score=26.74 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=28.5
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCH
Q 027947 43 PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (216)
Q Consensus 43 ~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~ 81 (216)
..|+..-....|+.+.+.=+.++++||++|--+....++
T Consensus 11 dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p 49 (257)
T TIGR01496 11 DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRP 49 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 345544445677878888888899999999987665544
No 71
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=62.86 E-value=43 Score=27.46 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
+.+|+-...+++ |-+.|||++.|-- +..+++.|++.+++
T Consensus 5 l~~~~gr~~l~~--L~~~ADV~i~n~r---pg~~~~lGl~~~~l 43 (191)
T PF02515_consen 5 LKSPEGRAALRR--LLATADVVIENFR---PGVLERLGLDYEAL 43 (191)
T ss_dssp TTSHHHHHHHHH--HHHT-SEEEEESS---TTHHHHTT-SHHHH
T ss_pred CcCHHHHHHHHH--HHHhCCEEEECCc---hhhhHhcCCCHHHH
Confidence 566765544443 3457999998865 56677899986544
No 72
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=61.35 E-value=16 Score=32.43 Aligned_cols=33 Identities=6% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
+|++..+++|+|.|++..|+ +.+++.++..+++
T Consensus 200 eqa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~ 232 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDKFS-PQQATEIAQIAPS 232 (284)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhc
Confidence 34555677999999999986 7899999988764
No 73
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=60.88 E-value=17 Score=33.88 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=44.5
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCCChHHHHHHHHHHHHhcCCee
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANII 72 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI 72 (216)
+.|+++|+ .-|+.++++ -+-+|+-|+|+..+.+. |++....+.. -+.-+..+++...+-+.|+.|+
T Consensus 195 lGGaKvsdKi~vl~~Ll~k-vD~liigG~ma~tFL~A~G~~iG~sl~e----~~~i~~a~~il~~a~~~~~~I~ 263 (397)
T cd00318 195 LGGAKVSDKIQVIENLLDK-VDYLIIGGGMAFTFLKAQGMDIGKSLFE----EDGIELAKSLLEKAKAKGVKIV 263 (397)
T ss_pred EcCccHHhHHHHHHHHHHh-cCEEEECcHHHHHHHHHcCCCcCccccC----hhhHHHHHHHHHHhHhcCCEEE
Confidence 57999988 557777775 57889999999887775 8887643211 1223566666666655576544
No 74
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=60.72 E-value=1.7e+02 Score=28.63 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHH----HhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 027947 54 PHLVRKVHLDYL----DAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (216)
Q Consensus 54 pe~V~~iH~~Yl----~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (216)
.+.+++.|+.-+ ++|+|+|.--|+..- ++++ .+++.+++.
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~-----------~Ea~----a~~~a~~~~--------------------- 163 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETFYDL-----------EELL----LALEAAREK--------------------- 163 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEccCCH-----------HHHH----HHHHHHHHh---------------------
Confidence 466777766544 678999998888532 2232 333443332
Q ss_pred CCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
...|++|+-++-+-|.. .+| .+.+++... +.+.++|.|.+........+..+++.++...++
T Consensus 164 ~~~p~~~Sf~~~~~g~l-~~G----------~~~~~~~~~-------~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~ 225 (612)
T PRK08645 164 TDLPIIAQVAFHEDGVT-QNG----------TSLEEALKE-------LVAAGADVVGLNCGLGPYHMLEALERIPIPENA 225 (612)
T ss_pred CCCcEEEEEEECCCCee-CCC----------CCHHHHHHH-------HHhCCCCEEEecCCCCHHHHHHHHHHHHhccCc
Confidence 12588999988665533 222 355555444 344689999999987788899999888776667
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
|+.
T Consensus 226 pl~ 228 (612)
T PRK08645 226 PLS 228 (612)
T ss_pred eEE
Confidence 765
No 75
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=60.58 E-value=56 Score=28.73 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=62.8
Q ss_pred ChHHHHHHHHH----HHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (216)
Q Consensus 53 ~pe~V~~iH~~----Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (216)
..+.+++.|+. ++++|+|+|.--|+..- .++ +.+++.+++..
T Consensus 129 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~-----------~E~----~aa~~a~~~~~------------------- 174 (305)
T PF02574_consen 129 SFEELRDFHREQAEALADAGVDLLLFETMPSL-----------AEA----KAALEAIKEVT------------------- 174 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-C-----------SCH----HHHHHHHHHHH-------------------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEecCcHH-----------HHH----HHHHHHHHhhh-------------------
Confidence 45688888854 66789998887777421 112 22333333311
Q ss_pred CCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCC
Q 027947 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~ 208 (216)
+.|++|.-++-+.+.. .+|. +..++...-....+.+ ..++|.|-+-..+-.....++.+.++...+
T Consensus 175 --~~p~~is~~~~~~~~l-~~g~----------~~~~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~ 240 (305)
T PF02574_consen 175 --GLPVWISFSCKDSGRL-RDGT----------SLEDAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSATHD 240 (305)
T ss_dssp --HCCSSEEE-EEEEES--TCTT----------BCTTSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHHHT-
T ss_pred --hhhceeccchhhhccc-cCCC----------CHHHHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhccCC
Confidence 2478888877665543 2321 2223333333334445 789999999988877777888887777556
Q ss_pred cccc
Q 027947 209 KMLL 212 (216)
Q Consensus 209 ~~~~ 212 (216)
.|+.
T Consensus 241 ~~l~ 244 (305)
T PF02574_consen 241 IPLI 244 (305)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6664
No 76
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=60.14 E-value=1.2e+02 Score=26.59 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHhcCCeee
Q 027947 53 SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~ 73 (216)
|.+.++++-+.+++.|++-|.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~ 44 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALF 44 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEE
Confidence 456788888888999999554
No 77
>PLN02417 dihydrodipicolinate synthase
Probab=59.33 E-value=1.2e+02 Score=26.40 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
|.+.+++.-+-+++.|++-|..+--..-.. -++.++-+++++.+++.
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-----~ls~~Er~~~~~~~~~~ 66 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-----LMSWDEHIMLIGHTVNC 66 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchh-----hCCHHHHHHHHHHHHHH
Confidence 456777777778899999665433222211 23445556665555543
No 78
>PRK06498 isocitrate lyase; Provisional
Probab=59.25 E-value=18 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=26.3
Q ss_pred HhCCCCEEEEec-CCCHHHHHHHHHHHHHh
Q 027947 178 ANSGADLIAFET-IPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 178 ~~~gvD~l~~ET-~p~~~Ea~a~~~a~~~~ 206 (216)
...++|+||+|| -|++.+++..++.+++.
T Consensus 342 ~apyADLlW~ET~~P~~~qa~~fa~~Ir~~ 371 (531)
T PRK06498 342 LQNGADLLWIETEKPHVAQIAGMVNRIREV 371 (531)
T ss_pred hcCcCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 357899999998 89999999999999985
No 79
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.30 E-value=1.3e+02 Score=28.43 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
+++.+.++.+.+.|+|.|.+=-+. ...++..++.++++.-..|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi 200 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPL 200 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 457777888999999999876433 67888889999987655554
No 80
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=57.81 E-value=1.4e+02 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHhcCCeee
Q 027947 53 SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~ 73 (216)
|.+.++++-+..+++|++-|.
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~ 43 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLV 43 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEE
Confidence 457899999999999998444
No 81
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=57.21 E-value=48 Score=28.62 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hCCCCEEEEecCCCHHHHH-HHHHHHHHhCCccccc
Q 027947 157 YGDAVSLETLKEFHRRRVLILA-NSGADLIAFETIPNKLEAK-VFSKYVIINQRKMLLK 213 (216)
Q Consensus 157 y~~~~s~ee~~~~h~~qi~~l~-~~gvD~l~~ET~p~~~Ea~-a~~~a~~~~~~~~~~~ 213 (216)
||. -|.+++.++-.+.++.|. +.|||+|++=.-. +- .+++.+++..+.|++.
T Consensus 37 YG~-ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNT----A~a~~~~~l~~~~~iPii~ 90 (251)
T TIGR00067 37 YGE-KSPEFILEYVLELLTFLKERHNIKLLVVACNT----ASALALEDLQRNFDFPVVG 90 (251)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCch----HHHHHHHHHHHHCCCCEEe
Confidence 543 689999999999999999 9999999865322 12 3456666655666653
No 82
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=56.91 E-value=1.6e+02 Score=27.06 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 027947 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-----------GFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120 (216)
Q Consensus 52 ~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~-----------g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~ 120 (216)
++|+.|...=+-=.+.|||||.|+ |-.+...+.+. .++.+...+..+..|+-
T Consensus 214 ~~~d~Ia~AaRiaaELGADIVKv~-yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~a---------------- 276 (348)
T PRK09250 214 TAADLTGQANHLAATIGADIIKQK-LPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVAN---------------- 276 (348)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEec-CCCChhhHHHhhcccccccccccccccchHHHHHHHHHh----------------
Q ss_pred CCCCCCCCCC---CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HhCCCCEEEEe---cCC
Q 027947 121 WDFTGSGRIS---SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLIL---ANSGADLIAFE---TIP 191 (216)
Q Consensus 121 ~~~~~~~~~~---~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l---~~~gvD~l~~E---T~p 191 (216)
. +.+++|+| || ..+.+++.+. ++.. .++|+-.+.+- -..
T Consensus 277 ---------c~ag~vpVviAG--G~-----------------k~~~~e~L~~----v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 277 ---------CYMGRRGLINSG--GA-----------------SKGEDDLLDA----VRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred ---------hccCCceEEEeC--CC-----------------CCCHHHHHHH----HHHHHHhhhcCCcchhhchhhhcC
Q ss_pred CHHHHHHHHHHHHHh
Q 027947 192 NKLEAKVFSKYVIIN 206 (216)
Q Consensus 192 ~~~Ea~a~~~a~~~~ 206 (216)
...|+.+.++++...
T Consensus 325 ~~~ea~~~~~~i~~i 339 (348)
T PRK09250 325 PMAEGVKLLNAIQDV 339 (348)
T ss_pred CcHHHHHHHHHHHHH
No 83
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=56.09 E-value=24 Score=30.95 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCCC---------HHH-HHHHHHHHHHhCCccccccc
Q 027947 168 EFHRRRVLILANSGADLIAFE-TIPN---------KLE-AKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~p~---------~~E-a~a~~~a~~~~~~~~~~~~~ 215 (216)
+.|...++.+. +++|.|=+. ..|+ ..+ ...+++++++..+.||+.|-
T Consensus 112 ~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL 169 (295)
T PF01180_consen 112 EDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKL 169 (295)
T ss_dssp HHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred HHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEe
Confidence 33555666666 789988664 3333 233 34577788888899998773
No 84
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=56.02 E-value=1.4e+02 Score=26.10 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=51.5
Q ss_pred CeEEEecchHHHHHHCCCCCCCc----------cccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHH--HhcC
Q 027947 21 GYSVVDGGFATELERHGADLNDP----------LWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGF--EAKG 88 (216)
Q Consensus 21 ~~lllDGg~gT~L~~~g~~~~~~----------~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l--~~~g 88 (216)
.+.++||-|=.-|++.|+-...+ .+-..+.+.+++.-+ +-.+||||||..|- +.+..++ .+.+
T Consensus 123 Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAq----a~~~aGadiiv~hm-g~ttgG~Igar~~ 197 (276)
T COG5564 123 TVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQ----AMTKAGADIIVAHM-GLTTGGLIGARSA 197 (276)
T ss_pred eeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHH----HHHHcCcceeeecc-cccccceeccccc
Confidence 47899999999998886543211 111233344554333 34689999998653 2222221 2446
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 027947 89 FSTEEAEALLRRSVEIACEARE 110 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~ 110 (216)
++.++..++++.+.+-+|..++
T Consensus 198 ~Sl~~~vel~~~~~~aar~v~k 219 (276)
T COG5564 198 LSLADCVELIELAAEAARGVRK 219 (276)
T ss_pred cCHHHHHHHHHHHHHHHhhhhh
Confidence 6777778888877777777653
No 85
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=55.77 E-value=40 Score=31.54 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHHHHHHHhC-C
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKVFSKYVIINQ-R 208 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~a~~~~~-~ 208 (216)
+.+.+|++++|+... ..++++.|+++|||+|++-+-. +-..+...++.+++.- +
T Consensus 139 ~~~l~v~aavg~~~~------------------------~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~ 194 (404)
T PRK06843 139 NNKLRVGAAVSIDID------------------------TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPN 194 (404)
T ss_pred hcCeEEEEEEeCCHH------------------------HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCC
Confidence 346788888887421 3457899999999999987543 3456667777777753 4
Q ss_pred cccc
Q 027947 209 KMLL 212 (216)
Q Consensus 209 ~~~~ 212 (216)
.+++
T Consensus 195 ~~vi 198 (404)
T PRK06843 195 LDLI 198 (404)
T ss_pred CcEE
Confidence 4443
No 86
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=55.50 E-value=54 Score=28.32 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHH
Q 027947 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLK 167 (216)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~ 167 (216)
||+.+......++-++..++-+... ..+.+|.-|+- +.... .+......+++.
T Consensus 9 GMgpeST~~yyr~ine~~~~~~g~~------------------h~~~i~~~s~~-f~~~~--------~~q~~~~w~~~~ 61 (230)
T COG1794 9 GMGPESTAPYYRKINEAVRAKLGGL------------------HSAELLLYSVD-FPEIE--------TLQRAGEWDEAG 61 (230)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCc------------------CcchhheecCC-cccHH--------HHHccCccccHH
Confidence 6787778888888887776655321 11222222221 11110 000112445666
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
..--+-++.|.++|+|+|++=|- -+..+.+.+++..+.|++
T Consensus 62 ~~L~~~a~~Le~~GAd~i~l~~N----T~H~~~d~iq~~~~iPll 102 (230)
T COG1794 62 EILIDAAKKLERAGADFIVLPTN----TMHKVADDIQKAVGIPLL 102 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC----cHHHHHHHHHHhcCCCee
Confidence 66777789999999999998663 345666677766667765
No 87
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.10 E-value=25 Score=31.36 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~ 207 (216)
++...+++|+|.|++..|+ +.|++.++..++...
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~ 244 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARA 244 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC
Confidence 3444567999999999998 999999999776543
No 88
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.01 E-value=23 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
++...+++|+|+|.+.+| ++.+++.+++.++.
T Consensus 194 ea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~ 225 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNA 225 (273)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhc
Confidence 444556799999999997 69999999987653
No 89
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=54.82 E-value=1.7e+02 Score=26.63 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhCCcc
Q 027947 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~~~~ 210 (216)
+|..+.++.+.+.|+|.|.+- |+ -.+.++...+..+++.-+.|
T Consensus 142 ~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~ 187 (365)
T TIGR02660 142 DFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP 187 (365)
T ss_pred HHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 344455667778899988654 43 36788888888888754344
No 90
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=54.71 E-value=64 Score=27.43 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (216)
-.+++...++-+..++.|.+.+-|.....+ | ..++++..+++-.+ ..
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-------g----~sE~~lg~~l~~~~----------------------~~ 59 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGN-------G----RSERILGRALRKSR----------------------VP 59 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGG-------G----THHHHHHHHHHHTS----------------------ST
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccc-------c----cccccccccccccc----------------------cc
Confidence 456778888888999999999998876411 1 12344444443300 13
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHH-HHHHHHHHHHh
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLE-AKVFSKYVIIN 206 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~E-a~a~~~a~~~~ 206 (216)
..+++|+.=+.+-+.. ....+.+.+.+...+.++.|--.-+|++++--.....+ ...+.+++++.
T Consensus 60 r~~~~i~tK~~~~~~~-----------~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l 125 (283)
T PF00248_consen 60 RDDIFISTKVYGDGKP-----------EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEEL 125 (283)
T ss_dssp GGGSEEEEEEESSSST-----------GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHH
T ss_pred cccccccccccccccc-----------cccccccccccccccccccccccchhccccccccccccccchhhhhhhhc
Confidence 3467888777111111 11357888888888888888767889999876554444 34444444443
No 91
>PRK15452 putative protease; Provisional
Probab=53.17 E-value=2e+02 Score=27.15 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHhcCCeee--ccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 027947 51 VSSPHLVRKVHLDYLDAGANIII--TASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~--TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (216)
..+++.++.+ +++|||.|. ...|.+... ...++.++ ++.++++|++.
T Consensus 10 ag~~e~l~aA----i~~GADaVY~G~~~~~~R~~---~~~f~~ed----l~eav~~ah~~-------------------- 58 (443)
T PRK15452 10 AGTLKNMRYA----FAYGADAVYAGQPRYSLRVR---NNEFNHEN----LALGINEAHAL-------------------- 58 (443)
T ss_pred CCCHHHHHHH----HHCCCCEEEECCCccchhhh---ccCCCHHH----HHHHHHHHHHc--------------------
Confidence 4667776654 689999665 344554321 23344332 55667777552
Q ss_pred CCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC-
Q 027947 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ- 207 (216)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~- 207 (216)
+.+++|+-..=| ..+++ +.+.+.++.+.+.|||.|++=. + +++..+++..
T Consensus 59 --g~kvyvt~n~i~-------------------~e~el-~~~~~~l~~l~~~gvDgvIV~d---~----G~l~~~ke~~p 109 (443)
T PRK15452 59 --GKKFYVVVNIAP-------------------HNAKL-KTFIRDLEPVIAMKPDALIMSD---P----GLIMMVREHFP 109 (443)
T ss_pred --CCEEEEEecCcC-------------------CHHHH-HHHHHHHHHHHhCCCCEEEEcC---H----HHHHHHHHhCC
Confidence 467888762111 12233 3344457888889999998643 3 3445555543
Q ss_pred Ccccccc
Q 027947 208 RKMLLKK 214 (216)
Q Consensus 208 ~~~~~~~ 214 (216)
..|+..+
T Consensus 110 ~l~ih~s 116 (443)
T PRK15452 110 EMPIHLS 116 (443)
T ss_pred CCeEEEE
Confidence 4555444
No 92
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=52.79 E-value=2.6e+02 Score=30.01 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=68.8
Q ss_pred HHHHHHHHH----HHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 027947 55 HLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (216)
Q Consensus 55 e~V~~iH~~----Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (216)
+.+++.|++ ++++|+|+|.--|..-.. ++ ++++..++++.... ..
T Consensus 144 del~~~y~eq~~~L~~~GvD~iliETi~d~~-----------Ea----kAal~a~~~~~~~~----------------~~ 192 (1178)
T TIGR02082 144 DELVDAYTEQAKGLLDGGVDLLLIETCFDTL-----------NA----KAALFAAETVFEEK----------------GR 192 (1178)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeccCCHH-----------HH----HHHHHHHHHHHhhc----------------CC
Confidence 556666654 446789998888875321 22 24444445442210 12
Q ss_pred CCCeEEEEec-CCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 131 SRPVLVAASV-GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 131 ~~~~~VaGsi-GP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
..|++|.+.+ ...|..+ +| .+.+++.. .+...++|.|.+-.-....++..+++.+.+..+.
T Consensus 193 ~lPv~vS~~~~d~~Gr~~-~G----------~~~~~~~~-------~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~ 254 (1178)
T TIGR02082 193 ELPIMISGTIVDTSGRTL-SG----------QTIEAFLT-------SLEHAGIDMIGLNCALGPDEMRPHLKHLSEHAEA 254 (1178)
T ss_pred CCeEEEEEEEECCCCeeC-CC----------CcHHHHHH-------HHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCc
Confidence 4588888554 4445433 11 34444433 3346799999999988899999999999988877
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
|+.
T Consensus 255 pi~ 257 (1178)
T TIGR02082 255 YVS 257 (1178)
T ss_pred eEE
Confidence 765
No 93
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=52.76 E-value=2.2e+02 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhC--Cccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQ--RKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~--~~~~ 211 (216)
++|.+.++.+.+.|+|.|.+--+- ...++...+.++++.- +.|+
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI 203 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRI 203 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeE
Confidence 567778899999999999876443 6778888899998765 4554
No 94
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.55 E-value=51 Score=30.36 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=52.5
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EEecCCCHHHHHHHHHHHHHhCCc
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-AFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l-~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
+.++.|.-.-|+....+-. .|++ .+.+.+.+--.+.++.|.+-|.|-| +===-+++.+...+-+.+.+..+-
T Consensus 130 ~ipIRIGvN~GSL~~~~~~------~yg~-~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~dy 202 (360)
T PRK00366 130 GIPIRIGVNAGSLEKDLLE------KYGE-PTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDY 202 (360)
T ss_pred CCCEEEecCCccChHHHHH------HcCC-CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 4678887655654432221 2432 5778888888889999999888544 444568899999999999888777
Q ss_pred cc
Q 027947 210 ML 211 (216)
Q Consensus 210 ~~ 211 (216)
|+
T Consensus 203 PL 204 (360)
T PRK00366 203 PL 204 (360)
T ss_pred Cc
Confidence 75
No 95
>PLN02489 homocysteine S-methyltransferase
Probab=52.39 E-value=1.8e+02 Score=26.27 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=64.9
Q ss_pred hHHHHHHHHH----HHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 027947 54 PHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (216)
Q Consensus 54 pe~V~~iH~~----Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (216)
.+.+++.|+. ++++|+|+|.-=|+..- .+++ .+++.+++..
T Consensus 162 ~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l-----------~E~~----a~~~~~~~~~-------------------- 206 (335)
T PLN02489 162 LEKLKDFHRRRLQVLAEAGPDLIAFETIPNK-----------LEAQ----AYVELLEEEN-------------------- 206 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeccCCh-----------HHHH----HHHHHHHHcC--------------------
Confidence 3667777664 44789998887777421 2222 3334433321
Q ss_pred CCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
.+.|++|.-++- -+..+.+| .+.+++.+.-.. ..++|.|.+-.. ....+..+++.++....+
T Consensus 207 ~~~p~~iS~t~~-~~~~l~~G----------~~~~~~~~~~~~------~~~~~~iGiNC~-~p~~~~~~l~~l~~~~~~ 268 (335)
T PLN02489 207 IKIPAWISFNSK-DGVNVVSG----------DSLLECASIADS------CKKVVAVGINCT-PPRFIHGLILSIRKVTSK 268 (335)
T ss_pred CCCeEEEEEEeC-CCCccCCC----------CcHHHHHHHHHh------cCCceEEEecCC-CHHHHHHHHHHHHhhcCC
Confidence 235888888873 23233332 355555444211 137899999986 788999999999887777
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
|+.
T Consensus 269 pl~ 271 (335)
T PLN02489 269 PIV 271 (335)
T ss_pred cEE
Confidence 765
No 96
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=52.18 E-value=93 Score=27.42 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=34.9
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
+.+|.+++ |++. |. +.++. .+.-.+.+.++|+|.+=+|-- .|....++++.+.+ .||.
T Consensus 76 ~~~vv~Dm-Pf~s-----------y~---~~e~a---~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~g-IpV~ 133 (263)
T TIGR00222 76 NCLIVTDL-PFMS-----------YA---TPEQA---LKNAARVMQETGANAVKLEGG---EWLVETVQMLTERG-VPVV 133 (263)
T ss_pred CceEEeCC-CcCC-----------CC---CHHHH---HHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCC-CCEE
Confidence 56777776 5553 32 23433 333455666699999999974 44445556666654 5554
No 97
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=52.08 E-value=20 Score=31.03 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
.++..++.|+|.|++--+.+.+|++.+++++|=
T Consensus 76 ~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 76 IIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred HHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 466678899999999999999999999988763
No 98
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.86 E-value=1.8e+02 Score=26.19 Aligned_cols=45 Identities=18% Similarity=-0.040 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCEEEEec-CC---------CHHHHHHHHHHHHHhCC-----ccccccc
Q 027947 170 HRRRVLILANSGADLIAFET-IP---------NKLEAKVFSKYVIINQR-----KMLLKKF 215 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p---------~~~Ea~a~~~a~~~~~~-----~~~~~~~ 215 (216)
|...++.+.+ ++|.|-+.- .| +...+..+++++++... .||+-|.
T Consensus 159 ~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKl 218 (344)
T PRK05286 159 YLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKI 218 (344)
T ss_pred HHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEe
Confidence 5556666654 699988762 22 34566778888888654 8998875
No 99
>PRK12677 xylose isomerase; Provisional
Probab=51.72 E-value=2e+02 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHh----CC--CCEEEEecCCC
Q 027947 161 VSLETLKEFHRRRVLILAN----SG--ADLIAFETIPN 192 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~----~g--vD~l~~ET~p~ 192 (216)
.+.++..+.+.+.++.+.+ .| |. |++|..|.
T Consensus 146 ~d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ 182 (384)
T PRK12677 146 KDVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPN 182 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCC
Confidence 4667777777766666544 23 65 67798754
No 100
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=51.34 E-value=13 Score=33.20 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++-...|-+-|..|.+||||||.|.
T Consensus 303 ~Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 303 FDLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEee
Confidence 4556788999999999999999874
No 101
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=51.34 E-value=13 Score=33.54 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....+.+.+..+-+||||+|.|.
T Consensus 290 ~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 290 LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 5777899999999999999999874
No 102
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=51.09 E-value=13 Score=33.54 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....+.+.+..+-+||||+|.|.
T Consensus 286 ~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 286 LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 5677899999999999999999874
No 103
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=51.06 E-value=1.7e+02 Score=25.56 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHH-hcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLD-AGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~-AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (216)
+.+.+++.-+.+++ +|++-|..+--..- -.-++.++-.++++.+++.
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE-----~~~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGE-----AFLLSTEEKKQVLEIVAEE 69 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccc-----cccCCHHHHHHHHHHHHHH
Confidence 45678887777888 99985543332111 1123445555665555554
No 104
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=50.89 E-value=74 Score=29.55 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
+.+|+-..-+++ |-+.|||+++| |+ +..+++.|++.+.+
T Consensus 74 Lk~~eGr~~l~~--Lv~~ADVvien-~r--pg~~~rlGl~~e~L 112 (416)
T PRK05398 74 TKTPEGKEVLEK--LIREADVLVEN-FG--PGALDRMGFTWERI 112 (416)
T ss_pred CCCHHHHHHHHH--HHhcCCEEEEC-CC--cchHHHcCCCHHHH
Confidence 456654433333 23569999998 54 56778899986644
No 105
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=50.62 E-value=14 Score=33.45 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++..+.+.+.+..+-+||||+|+|.
T Consensus 287 iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 287 FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 5777899999999999999999874
No 106
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.51 E-value=2e+02 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCC--CHHHHHHHHHHHHHhCCcc
Q 027947 168 EFHRRRVLILANSGADLIAFE-TIP--NKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~a~~~~~~~~ 210 (216)
++..+.++.+.++|+|.|.+= |+- .+.+...++..+++.-+.|
T Consensus 145 ~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 190 (378)
T PRK11858 145 DFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP 190 (378)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 344455777788999988554 443 6778888888887754444
No 107
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=50.49 E-value=14 Score=33.32 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....+.+.+..+-+||||+|.|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 5677889999999999999999873
No 108
>PLN03034 phosphoglycerate kinase; Provisional
Probab=50.45 E-value=31 Score=33.01 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCCChHHHHHHHHHHHHhcCCee
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANII 72 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI 72 (216)
+-|+|+|+ .-|+.+|++ -+-+|+-|+|+..+.+. |++....+.. -+.-+..+++...+=+-|+.|+
T Consensus 273 lGGaKVsdKI~vi~~Ll~k-vD~lliGG~ma~tFl~A~G~~IG~slvE----~d~i~~A~~il~~a~~~gv~I~ 341 (481)
T PLN03034 273 VGGSKVSSKIGVIESLLEK-CDILLLGGGMIFTFYKAQGLSVGSSLVE----EDKLELATSLLAKAKAKGVSLL 341 (481)
T ss_pred EcCccHHhHHHHHHHHHHh-cCEEEECcHHHHHHHHHcCCCcchhhcC----hhhhHHHHHHHHHHHhcCCEEE
Confidence 57899988 567788876 57889999999887754 8887542210 1222556666666666665443
No 109
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=50.34 E-value=43 Score=29.24 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccC
Q 027947 98 LRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAY 146 (216)
Q Consensus 98 ~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~ 146 (216)
.+.+++..+.||+.| + +..+.||+-|+|.+
T Consensus 204 ~eE~i~v~~~AR~~f-----------------~--~pv~iGCmrP~Ge~ 233 (275)
T COG1856 204 VEEAIKVVKYARKKF-----------------P--NPVSIGCMRPRGEW 233 (275)
T ss_pred HHHHHHHHHHHHHhC-----------------C--CCeeEeecCcCchh
Confidence 345667777777665 2 25688999999874
No 110
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=50.28 E-value=56 Score=27.04 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCCCeEEEEecCCcccCcCCCCCCCCCCCCC----------------------CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDA----------------------VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~----------------------~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.+++++|.=|++.+..+=.+|.+|-|..+ ..+| ..|.+|++++...|-=+|.+
T Consensus 40 ~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd---~vFsRqveA~g~~GDvLigI 116 (176)
T COG0279 40 NGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYD---EVFSRQVEALGQPGDVLIGI 116 (176)
T ss_pred cCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHH---HHHHHHHHhcCCCCCEEEEE
Confidence 4568888887777665443333444444211 1233 46888999999988556677
Q ss_pred ecCCCHHHHHHHHHHHHHhC
Q 027947 188 ETIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 188 ET~p~~~Ea~a~~~a~~~~~ 207 (216)
=|-.+-.-+..+++.+++.+
T Consensus 117 STSGNS~nVl~Ai~~Ak~~g 136 (176)
T COG0279 117 STSGNSKNVLKAIEAAKEKG 136 (176)
T ss_pred eCCCCCHHHHHHHHHHHHcC
Confidence 78888877777777777644
No 111
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=50.27 E-value=1.8e+02 Score=25.63 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHHHhcCCeee
Q 027947 53 SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~ 73 (216)
|.+.+++.-+-+++.|++-|.
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~ 46 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALF 46 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEE
Confidence 456788888888899998554
No 112
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.13 E-value=27 Score=31.31 Aligned_cols=33 Identities=6% Similarity=-0.000 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 171 RRRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
.+|+...+++|+|.|++..|+ +++++.++..++
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~ 247 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTA 247 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhc
Confidence 345666678999999999997 788888888765
No 113
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.23 E-value=1.7e+02 Score=24.98 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
-++.+.++|+|.+++=-.| .+|..-.++.+++.+.+++
T Consensus 96 fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEE
Confidence 3667788899988886665 4677888888888775554
No 114
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.85 E-value=25 Score=30.64 Aligned_cols=33 Identities=12% Similarity=-0.059 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
.++..++.|+|.|++--+.+.+|++.+++++|=
T Consensus 83 ~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 83 IIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred HHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 466677899999999999999999999998874
No 115
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=48.83 E-value=1.9e+02 Score=25.49 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=33.2
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
+.+|.+++ ||+.+ +.+.+++... -.+.+.++|+|.+-+|--. |....++++-+.+ -||
T Consensus 77 ~~~vv~Dm-Pf~sy-------------~~s~e~av~n---A~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~G-IPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGSY-------------QASPEQAVRN---AGRLMKEAGADAVKLEGGA---EIAETIKALVDAG-IPV 134 (261)
T ss_dssp SSEEEEE---TTSS-------------TSSHHHHHHH---HHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHTT---E
T ss_pred CceEEecC-Ccccc-------------cCCHHHHHHH---HHHHHHhcCCCEEEeccch---hHHHHHHHHHHCC-CcE
Confidence 56777777 77763 2356655544 3555666999999999765 3344555555544 444
No 116
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=48.49 E-value=25 Score=30.89 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
..++..++.|++.|++-.+.+.+|++.+++++|
T Consensus 81 ~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 81 PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 357778999999999999999999999999987
No 117
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=48.15 E-value=2e+02 Score=25.49 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=66.5
Q ss_pred ChHHHHHHHHH----HHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (216)
Q Consensus 53 ~pe~V~~iH~~----Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (216)
+.+.+++.|++ ++++|+|+|.--|+..- ++++ .+++.+++..
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~-----------~E~~----~~~~~~~~~~------------------- 179 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACETIPNL-----------DEAE----ALVELLKEEF------------------- 179 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeccCCH-----------HHHH----HHHHHHHHhc-------------------
Confidence 34667777654 34679999998888532 2222 3333433221
Q ss_pred CCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHHHhC
Q 027947 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN-SGADLIAFETIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~-~gvD~l~~ET~p~~~Ea~a~~~a~~~~~ 207 (216)
.+.|++|.-++-.-|.. .+| .+.+++... +.+ .++|.|.+-.. .+..+..+++.++...
T Consensus 180 -~~~pv~is~~~~~~g~l-~~G----------~~~~~~~~~-------l~~~~~~~~iGiNC~-~p~~~~~~l~~~~~~~ 239 (304)
T PRK09485 180 -PGVPAWLSFTLRDGTHI-SDG----------TPLAEAAAL-------LAASPQVVAVGVNCT-APELVTAAIAALRAVT 239 (304)
T ss_pred -CCCcEEEEEEeCCCCcC-CCC----------CCHHHHHHH-------HhcCCCceEEEecCC-CHHHHHHHHHHHHhcc
Confidence 24689999988655433 222 355555444 223 35899999987 7888888888887766
Q ss_pred Ccccc
Q 027947 208 RKMLL 212 (216)
Q Consensus 208 ~~~~~ 212 (216)
+.|+.
T Consensus 240 ~~pl~ 244 (304)
T PRK09485 240 DKPLV 244 (304)
T ss_pred CCcEE
Confidence 66764
No 118
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=48.09 E-value=1.1e+02 Score=26.33 Aligned_cols=37 Identities=24% Similarity=0.021 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCEEEEecCC--------------CHHHHHHHHHHHHHhCC
Q 027947 172 RRVLILANSGADLIAFETIP--------------NKLEAKVFSKYVIINQR 208 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p--------------~~~Ea~a~~~a~~~~~~ 208 (216)
+.++.+.++||+.|.+|-.. +.+|....++++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 44788888999999997532 67888888888877643
No 119
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=47.95 E-value=2.1e+02 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.4
Q ss_pred CCCCCCccccccccC-CChHHHHHHHHHHHHhcCCeeeccccc
Q 027947 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQ 78 (216)
Q Consensus 37 g~~~~~~~ws~~~ll-~~pe~V~~iH~~Yl~AGadiI~TnTy~ 78 (216)
|+.+..|+|.+.-.. .+.+.+..+.... +|+=++-|-|..
T Consensus 8 Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g--~G~i~~ktvt~~ 48 (310)
T COG0167 8 GLKFPNPLGLAAGFDGKNGEELDALAALG--FGAIVTKTVTPE 48 (310)
T ss_pred ceecCCCCeEcccCCccCHHHHHHHHhcC--CceEEecCCCCc
Confidence 677778999855545 7888888877666 777777777765
No 120
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.88 E-value=29 Score=30.98 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
+++...+++|+|.|++..|+ +++++.+++.++.
T Consensus 208 eea~~a~~agaDiImLDnms-pe~l~~av~~~~~ 240 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG 240 (290)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC
Confidence 34555678999999999987 8899998887763
No 121
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.86 E-value=2.2e+02 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCEEEEe-cCC--CHHHHHHHHHHHHHhCCcc
Q 027947 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~p--~~~Ea~a~~~a~~~~~~~~ 210 (216)
+..+.++.+.+.|+|.|.+= |+- .+.++..++..+++....|
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~ 186 (363)
T TIGR02090 142 FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP 186 (363)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCce
Confidence 44455777888999988554 543 5778888888887654333
No 122
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=47.76 E-value=2.9e+02 Score=27.28 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++|.+.++.+.+.|+|.|.+=-+. ...++...+.++++.-+.|+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi 200 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPV 200 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEE
Confidence 467777889999999999887543 67788888888887655554
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=47.70 E-value=1.8e+02 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ecCC--CHHHHHHHHHHHHHhCCcc
Q 027947 168 EFHRRRVLILANSGADLIAF-ETIP--NKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~a~~~~~~~~ 210 (216)
++..+.++.+.+.|+|.|.+ -|+- .+.++...+..+++....|
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 184 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP 184 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 34555677888899998865 3443 6778888888888754333
No 124
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.57 E-value=30 Score=31.03 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
+|+...+++|+|.|++.+|+ +.|++.+++.++
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~ 250 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTN 250 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhc
Confidence 45556677999999999998 689999998765
No 125
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.44 E-value=47 Score=26.91 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
+++.+.++|+|++.+=..+...+...+++++++.+.++.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~ 107 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQ 107 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEE
Confidence 457788899999998766665667888888888775554
No 126
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.07 E-value=87 Score=28.40 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCC--CEEEEe-cCCCHHHHHHHHHHHHHhCC-ccccc
Q 027947 171 RRRVLILANSGA--DLIAFE-TIPNKLEAKVFSKYVIINQR-KMLLK 213 (216)
Q Consensus 171 ~~qi~~l~~~gv--D~l~~E-T~p~~~Ea~a~~~a~~~~~~-~~~~~ 213 (216)
.+++..|+++|+ |+|.+- |-++...+..+++.+++... .||+.
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 468899999965 999986 55667777778888887653 66654
No 127
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=46.68 E-value=2.2e+02 Score=25.64 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCC-CCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSG-ADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~g-vD~l~~ 187 (216)
.+.+|..++ ++.|.++| +|+|-+
T Consensus 225 ~~~~e~~~~----~~~l~~~G~vd~i~v 248 (343)
T cd04734 225 LSPDEALEI----AARLAAEGLIDYVNV 248 (343)
T ss_pred CCHHHHHHH----HHHHHhcCCCCEEEe
Confidence 467776544 88888898 899966
No 128
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=46.44 E-value=2.7e+02 Score=26.56 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+++.+.++.+.++|+|.|.+=-+. ...++...+.++++.-..|+
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI 199 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPV 199 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCce
Confidence 4667888899999999999776433 67888889999987655554
No 129
>TIGR00035 asp_race aspartate racemase.
Probab=46.26 E-value=50 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccccc
Q 027947 163 LETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 163 ~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
.++...+-.+.++.|.++|+|++++=..+ +..+++.+++..+.|++.
T Consensus 57 ~~~~~~~l~~~~~~L~~~g~d~iviaCNT----ah~~~~~l~~~~~iPii~ 103 (229)
T TIGR00035 57 EDRPRPILIDIAVKLENAGADFIIMPCNT----AHKFAEDIQKAIGIPLIS 103 (229)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCcc----HHHHHHHHHHhCCCCEec
Confidence 45677888888999999999999976544 344466777766677763
No 130
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=46.23 E-value=58 Score=27.85 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC---CCHHHHHHHHHHHHHhCC
Q 027947 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~---p~~~Ea~a~~~a~~~~~~ 208 (216)
..|.+++...+++|.|++. |.. .+..++..+++++++.+.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~g~ 90 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSSGR 90 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhcCC
Confidence 4699999999999999999 554 267889999999998763
No 131
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.06 E-value=62 Score=28.18 Aligned_cols=47 Identities=19% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCCEEEE------------ecCCCHHHHHHHHHHHHHhCCccccccc
Q 027947 169 FHRRRVLILANSGADLIAF------------ETIPNKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~------------ET~p~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
.|...++.+.++|+|.|=+ +-..+...+..+++++++..+.||+-|+
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 3556677888889999855 2235667788899999988789998775
No 132
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=45.92 E-value=17 Score=32.97 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....|.+.+..+-+||||+|.|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 5667899999999999999999874
No 133
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.90 E-value=33 Score=30.44 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
|+...+++|+|.|++..|+ +.|++.++..++
T Consensus 206 ea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~ 236 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMT-PDTLREAVAIVA 236 (281)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhC
Confidence 3444567999999999986 789999988765
No 134
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.76 E-value=34 Score=30.38 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
++...+++|+|.|++..|+ +.+++.++..++
T Consensus 205 e~~ea~~~gaDiImLDn~s-~e~l~~av~~~~ 235 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDNFS-LDDLREGVELVD 235 (281)
T ss_pred HHHHHHhcCCCEEEECCCC-HHHHHHHHHHhC
Confidence 4455567999999999987 889999988776
No 135
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.70 E-value=2.3e+02 Score=27.93 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+||.+.++.+.+.|+|.|.+=-+. ...++..++.++++.-+.|+
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi 201 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPL 201 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeE
Confidence 5678888999999999999876433 67888889999888665664
No 136
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.62 E-value=3e+02 Score=26.95 Aligned_cols=44 Identities=14% Similarity=-0.041 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecC---CCHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~---p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++|.+.++.+.++|+|.|.+=-+ -...++..++.++++.-..|+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi 195 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPV 195 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCce
Confidence 56777788999999999977643 367888899999987654554
No 137
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=45.25 E-value=2.1e+02 Score=24.89 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhCCccc
Q 027947 172 RRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
+.++.+.+.|+|-|.+- |+ -++.++...+..+++....|+
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34667777899987654 43 367788888888887654443
No 138
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.24 E-value=1e+02 Score=27.17 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 027947 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS----TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (216)
Q Consensus 54 pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~----~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (216)
.+...++|..-.+-|..| -+=++.|++.- +.|-. .++..++.++|++||++.-
T Consensus 53 ~~er~~l~~ai~etgv~i-pSmClSaHRRf--PfGS~D~~~r~~aleiM~KaI~LA~dLG-------------------- 109 (287)
T COG3623 53 KEERLALVNAIQETGVRI-PSMCLSAHRRF--PFGSKDEATRQQALEIMEKAIQLAQDLG-------------------- 109 (287)
T ss_pred HHHHHHHHHHHHHhCCCc-cchhhhhhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 345678899988888764 22334444321 22321 2456678999999988752
Q ss_pred CCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCH
Q 027947 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (216)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~ 193 (216)
-+.+.+|| |-.+..+. ++-+.....+--+..++....+.| ++++|+|-+.
T Consensus 110 -IRtIQLAG----YDVYYE~~--------d~eT~~rFi~g~~~a~~lA~~aqV-~lAvEiMDtp 159 (287)
T COG3623 110 -IRTIQLAG----YDVYYEEA--------DEETRQRFIEGLKWAVELAARAQV-MLAVEIMDTP 159 (287)
T ss_pred -ceeEeecc----ceeeeccC--------CHHHHHHHHHHHHHHHHHHHhhcc-EEEeeecccH
Confidence 34566666 44443221 112233333333444444455555 7788998654
No 139
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=45.13 E-value=31 Score=29.82 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
.++..++.|+|.|++--+.+.+|++.++++++.
T Consensus 76 ~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 76 LIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 577889999999999999999999999999983
No 140
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=44.79 E-value=46 Score=29.50 Aligned_cols=33 Identities=6% Similarity=0.237 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
+|++..+++|+|.|++..|+ ..+++.+++.+++
T Consensus 199 eea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~ 231 (277)
T TIGR01334 199 EQALTVLQASPDILQLDKFT-PQQLHHLHERLKF 231 (277)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhc
Confidence 34555677999999999976 8899999998864
No 141
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=44.63 E-value=2.1e+02 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhC
Q 027947 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~ 207 (216)
++.+.++.+.+.|+|.|.+- |+ -.+.++...+..+++.-
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 150 RVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 44455777778999998765 43 36788888888888753
No 142
>PLN03231 putative alpha-galactosidase; Provisional
Probab=44.53 E-value=93 Score=28.62 Aligned_cols=52 Identities=27% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEec-----CCCHHHHHHHHHHHHHhCCcccc
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFET-----IPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ET-----~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.+..-+++||..-++.|++=|||+|=.-- .+...+..++.+|++.++++.++
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~ 212 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIY 212 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEE
Confidence 45567788999999999999999995442 24567888999999999976554
No 143
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=44.51 E-value=33 Score=31.39 Aligned_cols=71 Identities=15% Similarity=0.393 Sum_probs=51.0
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC--CCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeecccc
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH--GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~--g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
+-|++++. ..|..+|++ -..+|+-|||...+.+- |.+....++. -+.-+.|.++|..--+-|.+|+.--.|
T Consensus 210 lGGaKVadKIqlI~nLldk-v~~liigGGMaftFlKvl~~~eiG~Sl~d----e~g~e~v~~l~~kak~~~v~i~lPvDf 284 (416)
T KOG1367|consen 210 LGGAKVADKIQLIENLLDK-VNELIIGGGMAFTFLKVLNGMEIGKSLFD----EEGAEIVKDLMEKAKAKGVRILLPVDF 284 (416)
T ss_pred hcCchhhhHHHHHHHHHhh-cceEEEcCceeehHHHHhCCcchhhhhhh----hhhHHHHHHHHHHHHHcCcEEEeeeee
Confidence 45777777 567788886 68899999999887775 6776655543 244578999998877778765544333
No 144
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=44.18 E-value=47 Score=28.88 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHH--HHHHHHHHHHHhCCcccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKL--EAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~--Ea~a~~~a~~~~~~~~~~ 212 (216)
..+.++.+.++|.|.|++---..+. .+...++++|+..+.|++
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvi 74 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVI 74 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEE
Confidence 4556888999999999998555444 488999999988888875
No 145
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=44.10 E-value=20 Score=32.47 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....+.+.+..+-+||||+|.|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 5666789999999999999999874
No 146
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.59 E-value=2.5e+02 Score=25.31 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=55.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEec--------CCcccCcCCCCCCCCCCC
Q 027947 87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASV--------GSYGAYLADGSEYSGDYG 158 (216)
Q Consensus 87 ~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsi--------GP~g~~l~~gseY~g~y~ 158 (216)
..++.++++++.+.-++-|+.|.+. .=+-+-|-|.- .|.-....| | |+
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~a------------------GfDgVeih~ahGyLl~qFlsp~~N~RtD--~----yG 180 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREA------------------GYDGVEIMGSEGYLINQFLAPRTNKRTD--E----WG 180 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc------------------CCCEEEEecccchHHHHhcCCccCCCcC--c----cC
Confidence 3577788899998888888877653 01234454442 232211111 3 33
Q ss_pred CCCCHHHHHHHHHHHHHHHHhC-CCCEEE------EecC---CCHHHHHHHHHHHHHhC
Q 027947 159 DAVSLETLKEFHRRRVLILANS-GADLIA------FETI---PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 159 ~~~s~ee~~~~h~~qi~~l~~~-gvD~l~------~ET~---p~~~Ea~a~~~a~~~~~ 207 (216)
. +.+.-..+-.+.++++.+. |.|+.+ .|.. .+..|+..+++.+.+.+
T Consensus 181 G--slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 181 G--SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred C--CHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 2 4555566666667766553 667654 2433 46777777777776654
No 147
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=43.02 E-value=3.4e+02 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.048 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++|.+.++.+.++|+|.|.+=-+. ...++..++.++++.-+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi 200 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPV 200 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeE
Confidence 568888999999999999876443 67888899999988655554
No 148
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=42.78 E-value=2.4e+02 Score=25.01 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=30.8
Q ss_pred HHHHHHhCC-CCEEEEe-cCC----------CHHHHHHHHHHHHHhCCccccccc
Q 027947 173 RVLILANSG-ADLIAFE-TIP----------NKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 173 qi~~l~~~g-vD~l~~E-T~p----------~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
.++.+.++| +|+|=+- ..| +...+..+++++++..+.||+-|.
T Consensus 110 ~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKl 164 (310)
T PRK02506 110 ILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKL 164 (310)
T ss_pred HHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEec
Confidence 355556677 8988664 333 356778889999988889998774
No 149
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=42.76 E-value=46 Score=33.05 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=43.8
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCCChHHHHHHHHHHHHhcCCe
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadi 71 (216)
+.|+++|+ .-|..++++ -+-+|+-|+|+..+.+. |++....+.- -+.-+..+++...+-+-|+.|
T Consensus 194 lGGaKvsdKi~vl~~ll~~-~D~iligG~ma~tFl~a~G~~ig~sl~e----~~~~~~a~~il~~a~~~~~~i 261 (645)
T PRK13962 194 LGGAKVSDKIGVIENLLEK-VDKLLIGGGMAYTFLKAKGYEVGKSLVE----EDKLDLAKELLAKAEEKGVKL 261 (645)
T ss_pred EcCccHHhHHHHHHHHHHh-CCEEEECcHHHHHHHHHcCCCCChhhcC----hhhHHHHHHHHHHHHhcCCEE
Confidence 57999988 567788875 57889999999777665 8887643211 122255666777766666543
No 150
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=42.18 E-value=29 Score=20.28 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCeeecc
Q 027947 60 VHLDYLDAGANIIITA 75 (216)
Q Consensus 60 iH~~Yl~AGadiI~Tn 75 (216)
..+..+++|+|-|.||
T Consensus 12 ~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHT-SEEEES
T ss_pred HHHHHHHcCCCEeeCC
Confidence 4477899999999987
No 151
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=41.69 E-value=2.3e+02 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHhcCCeeecc
Q 027947 53 SPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
+++.+...-+.-.++|||+|.|+
T Consensus 158 ~~~~i~~a~~~a~e~GAD~vKt~ 180 (267)
T PRK07226 158 DPEVVAHAARVAAELGADIVKTN 180 (267)
T ss_pred cHHHHHHHHHHHHHHCCCEEeeC
Confidence 35556665566667888888776
No 152
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=41.23 E-value=53 Score=30.87 Aligned_cols=65 Identities=14% Similarity=0.337 Sum_probs=43.5
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC--CCCCCCccccccccCC--ChHHHHHHHHHHHHhcCCeee
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH--GADLNDPLWSAKCLVS--SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~--g~~~~~~~ws~~~ll~--~pe~V~~iH~~Yl~AGadiI~ 73 (216)
+.|+++|+ .-|..++++ -+-+|+-|+|+..+.+. |++....+ ++ .-+..+++...+-+-|+.|+.
T Consensus 212 lGGaKvsdKi~vl~~Ll~k-~D~iligG~ma~tFL~A~~G~~iG~sl------~E~~~i~~a~~il~~a~~~~~~I~l 282 (417)
T PTZ00005 212 LGGAKVADKIQLIKNLLDK-VDEMIIGGGMAFTFKKVLDNMPIGKSL------FDEEGAKIVKEIMEKAKEKNVKIHL 282 (417)
T ss_pred EcCccHHhHHHHHHHHHHh-cCEEEECcHHHHHHHHHhCCCccCccc------cChhhHHHHHHHHHHHHhcCCEEeC
Confidence 57899988 567788875 57889999999887774 68775432 22 224556666666555655443
No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.09 E-value=61 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
|+...+++|+|.|.+..|+ +.+++.+++.+++
T Consensus 208 ea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~ 239 (288)
T PRK07428 208 QVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQ 239 (288)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHh
Confidence 4444567999999999877 6899999988875
No 154
>PRK09389 (R)-citramalate synthase; Provisional
Probab=41.02 E-value=3.3e+02 Score=26.01 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ecCC--CHHHHHHHHHHHHHhCCcc
Q 027947 168 EFHRRRVLILANSGADLIAF-ETIP--NKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~-ET~p--~~~Ea~a~~~a~~~~~~~~ 210 (216)
+|..+.++.+.++|+|.|.+ -|+- .+.+...+++.+++..+.|
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~v~ 188 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVKGP 188 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcCCe
Confidence 44555677788899998855 4543 6778888888887654333
No 155
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=40.99 E-value=2.7e+02 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.++..++ ++.|.+.|+|+|-+
T Consensus 238 ~~~ee~~~~----~~~l~~~g~d~i~v 260 (338)
T cd02933 238 DPEATFSYL----AKELNKRGLAYLHL 260 (338)
T ss_pred CCHHHHHHH----HHHHHHcCCcEEEE
Confidence 466665544 78888889999976
No 156
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=40.92 E-value=24 Score=31.88 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHhcCCeeecc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~Tn 75 (216)
++....|.+.+..|-+||||+|.|.
T Consensus 294 ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 294 IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEee
Confidence 5677799999999999999999873
No 157
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=40.34 E-value=41 Score=31.33 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=42.7
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCCChHHHHHHHHHHHHhcCCe
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadi 71 (216)
+.|+++|+ .-++.++++ -+-+|+-|+|+-.+.+. |++....+.. -+.-+.++++...+=+.|+.|
T Consensus 191 lGGaKvsdKi~vi~~Ll~~-~D~liigG~ma~tFl~A~G~~ig~sl~e----~~~i~~a~~il~~a~~~~~~i 258 (389)
T PRK00073 191 LGGAKVSDKIGVLENLLEK-VDKLIIGGGMANTFLKAQGYNVGKSLVE----EDLIDTAKELLEKAKEKGVKI 258 (389)
T ss_pred EcCccHHhHHHHHHHHHHh-hhhheeChHHHHHHHHHcCCCcChhhcc----hhhHHHHHHHHHHHHhcCCEE
Confidence 57899988 557777775 46788999999777775 8887543211 112345666666665556543
No 158
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.08 E-value=2.6e+02 Score=24.58 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHhcCCeeeccccccCHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 027947 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (216)
Q Consensus 52 ~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l-~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (216)
-+.+-|+.. +++|++.|.-. +.+|.... ...+.+.+++.+.....++.|++.
T Consensus 75 ~~~~die~A----~~~g~~~v~i~-~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~---------------------- 127 (279)
T cd07947 75 ANKEDLKLV----KEMGLKETGIL-MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH---------------------- 127 (279)
T ss_pred CCHHHHHHH----HHcCcCEEEEE-EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC----------------------
Confidence 344444444 46788854432 34444433 355777666666666666665431
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHhCCCC-EE-EEecCCCH---------HHHHH
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSL-ETLKEFHRRRVLILANSGAD-LI-AFETIPNK---------LEAKV 198 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~-ee~~~~h~~qi~~l~~~gvD-~l-~~ET~p~~---------~Ea~a 198 (216)
...|..++ -+.. + .++ +...+|-.+.++...++|+| .| +.-|+-.. .++..
T Consensus 128 --g~~v~~~~--ed~~------------r-~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~ 190 (279)
T cd07947 128 --GIKPRCHL--EDIT------------R-ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPK 190 (279)
T ss_pred --CCeEEEEE--Eccc------------C-CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHH
Confidence 12344444 1111 0 122 34445555566667779999 45 66787632 67888
Q ss_pred HHHHHHHhCCcc
Q 027947 199 FSKYVIINQRKM 210 (216)
Q Consensus 199 ~~~a~~~~~~~~ 210 (216)
++..+++..+.|
T Consensus 191 l~~~l~~~~~~p 202 (279)
T cd07947 191 IIYGLRKDCGVP 202 (279)
T ss_pred HHHHHHHhcCCC
Confidence 888888754333
No 159
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=39.51 E-value=2.6e+02 Score=24.38 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 027947 57 VRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109 (216)
Q Consensus 57 V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~ 109 (216)
+.+..+.++++|+++|.-..=.++. .-++++..+++..-..+-.-+..
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~-----~~isp~~f~e~~~p~~k~i~~~i 217 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASS-----SILSPEDFKEFSLPYLKKVFDAI 217 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccc-----CCCCHHHHHHHhhHHHHHHHHHH
Confidence 4455666777899988755433321 11354555555554444444433
No 160
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=39.19 E-value=3.6e+02 Score=25.98 Aligned_cols=109 Identities=23% Similarity=0.183 Sum_probs=61.3
Q ss_pred HHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecC
Q 027947 62 LDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG 141 (216)
Q Consensus 62 ~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiG 141 (216)
+.-+++|+++|....--.........+.+.++..+....+++.|++. +.. |. ++
T Consensus 92 e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~----------------------G~~--v~--~~ 145 (524)
T PRK12344 92 QALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH----------------------GRE--VI--FD 145 (524)
T ss_pred HHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc----------------------CCe--EE--Ec
Confidence 34567888876654322222223455777666666666666666542 122 22 22
Q ss_pred CcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhCCcc
Q 027947 142 SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 142 P~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~~~~ 210 (216)
+- .+.++ | ..+. +|..+.++.+.++|+|.|.+- |+ -.+.+...+++.+++.-+.|
T Consensus 146 ~e--~~~Da------~--r~d~----~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~v~ 203 (524)
T PRK12344 146 AE--HFFDG------Y--KANP----EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPGVP 203 (524)
T ss_pred cc--ccccc------c--cCCH----HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcCCe
Confidence 21 00010 1 1233 455566778889999998765 32 46788888888888765333
No 161
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=39.05 E-value=51 Score=26.91 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHhcCC----------eeeccccccCHHHHHh
Q 027947 53 SPHLVRKVHLDYLDAGAN----------IIITASYQATIQGFEA 86 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGad----------iI~TnTy~a~~~~l~~ 86 (216)
.++.|++.|+.+++-+.+ -++|.|+..++..+.+
T Consensus 93 ~~~avr~~h~q~~~lA~~al~~~p~~~R~~s~~T~~vs~~~~~k 136 (171)
T PF14394_consen 93 PSEAVRSYHKQMLELAQEALDRVPPEERDFSGLTMSVSREDYEK 136 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCccccceeeeEEEeCHHHHHH
Confidence 458999999999997754 5678888888776544
No 162
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=38.94 E-value=1.6e+02 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 160 AVSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 160 ~~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
..+.+++...|++|++...+.|...|+.
T Consensus 124 ~~sld~V~~AY~eQ~~~ve~~Gg~~ILM 151 (382)
T PF06187_consen 124 AASLDDVIAAYEEQLEAVEAAGGRVILM 151 (382)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT--EEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4689999999999999999999999984
No 163
>PLN02270 phospholipase D alpha
Probab=38.76 E-value=1.7e+02 Score=30.00 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHHHHHh--cCC--eeeccccccCHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027947 57 VRKVHLDYLDA--GAN--IIITASYQATIQGFE-AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (216)
Q Consensus 57 V~~iH~~Yl~A--Gad--iI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.+.||..|++| .|+ |-++|-|-.+..-.. ..++..+.....|.-..+|+.+++++..+ ..+
T Consensus 497 ~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~--------------~e~ 562 (808)
T PLN02270 497 DRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEA--------------GEK 562 (808)
T ss_pred hhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhC--------------CCC
Confidence 47799999987 455 888999987654322 23443333444556666777777666532 134
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHH--------HHHHHHHHHHHHHHhCCC-----CEEEEec
Q 027947 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLE--------TLKEFHRRRVLILANSGA-----DLIAFET 189 (216)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~e--------e~~~~h~~qi~~l~~~gv-----D~l~~ET 189 (216)
-.++|.--+=|-|.. ...+.. .+...+...+++|.++|+ |.|-|-.
T Consensus 563 f~VyIViP~~peG~~------------e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~ 621 (808)
T PLN02270 563 FTVYVVVPMWPEGIP------------ESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFC 621 (808)
T ss_pred CEEEEEECCCCCCCc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEe
Confidence 578998866665532 012333 344455556777877776 5664443
No 164
>PLN02282 phosphoglycerate kinase
Probab=38.37 E-value=44 Score=31.27 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=45.7
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCC--ChHHHHHHHHHHHHhcC------C
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVS--SPHLVRKVHLDYLDAGA------N 70 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~--~pe~V~~iH~~Yl~AGa------d 70 (216)
+-|+++|+ .-++.+|++ -+-+|+-|+|+..+.+. |++....+ ++ .-+..+++...+=+-|+ |
T Consensus 198 lGGaKvsdKi~vi~~Ll~k-vD~lliGG~ma~tFl~A~G~~iG~sl------~e~d~i~~a~~il~~a~~~g~~I~lPvD 270 (401)
T PLN02282 198 VGGSKVSTKIGVIESLLEK-VDILLLGGGMIFTFYKAQGYSVGSSL------VEEDKLDLATSLIEKAKAKGVSLLLPTD 270 (401)
T ss_pred EcCCcHHhHHHHHHHHHHh-hhhheeccHHHHHHHHHcCCCcChhh------cChhhHHHHHHHHHHHHhcCCEEeCCce
Confidence 56899988 557778875 46788999999877765 88875422 22 22455566666655565 4
Q ss_pred eeeccccc
Q 027947 71 IIITASYQ 78 (216)
Q Consensus 71 iI~TnTy~ 78 (216)
++.+.+|.
T Consensus 271 ~v~~~~~~ 278 (401)
T PLN02282 271 VVIADKFA 278 (401)
T ss_pred EEEecccC
Confidence 55555554
No 165
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=38.02 E-value=2.8e+02 Score=24.43 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred cCCChHHH-----------HHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 027947 50 LVSSPHLV-----------RKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIAC 106 (216)
Q Consensus 50 ll~~pe~V-----------~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~ 106 (216)
+.++||.+ .+..+.++++|||+|.-..=.++.. -++++..+++..-..+-..
T Consensus 164 l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~-----~lsp~~f~ef~~p~~~~i~ 226 (339)
T PRK06252 164 LIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPE-----LLGPKMFEEFVLPYLNKII 226 (339)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcccc-----ccCHHHHHHHHHHHHHHHH
Confidence 35688754 3455556778999876443222211 1344555555544444333
No 166
>PRK08185 hypothetical protein; Provisional
Probab=38.01 E-value=2.6e+02 Score=24.74 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE---------ec--CCCHHHHHHHHHHHHHhCCcccc
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF---------ET--IPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~---------ET--~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.+++|+.+|.+.. |||.|++ .| -|.+. ...++.+++..+.|++
T Consensus 149 t~peea~~f~~~T-------gvD~LAvaiGt~HG~y~~~~kp~L~--~e~l~~I~~~~~iPLV 202 (283)
T PRK08185 149 TDPEQAEDFVSRT-------GVDTLAVAIGTAHGIYPKDKKPELQ--MDLLKEINERVDIPLV 202 (283)
T ss_pred CCHHHHHHHHHhh-------CCCEEEeccCcccCCcCCCCCCCcC--HHHHHHHHHhhCCCEE
Confidence 3678877776543 8999998 55 45544 3344444444467764
No 167
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.81 E-value=2.7e+02 Score=24.15 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhcCCeee-ccccccCHHHHHhcCCCHHHHHHHHHHHHH
Q 027947 53 SPHLVRKVHLDYLDAGANIII-TASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~-TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (216)
+.+.+++.-+.+++.|++-|. .-|-+=. .-++.++-+++++.+++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~------~~Lt~eEr~~l~~~~~~ 63 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLG------PSLSFQEKLELLKAYSD 63 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCc------ccCCHHHHHHHHHHHHH
Confidence 456777777777888888544 3333211 12344555555555544
No 168
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=37.57 E-value=1.1e+02 Score=28.10 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCCeeeccccccCHHHHHhc-----C---------CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027947 56 LVRKVHLDYLDAGANIIITASYQATIQGFEAK-----G---------FSTEEAEALLRRSVEIACEAREIYYDRCMKDSW 121 (216)
Q Consensus 56 ~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~-----g---------~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~ 121 (216)
.++++...=++||.++++-.-|+ +.+... | +. ++...+.+ .+...+++.+|.+++.
T Consensus 39 ~~~~~~~~q~dAGld~~Tdgqlr---Dm~~~fl~~i~~~~~~~~p~~~~-~~~a~i~e--l~~~~~~~~~~~~~~~---- 108 (344)
T PRK06052 39 VVRSAFQMKIDAGVQVPTYPQFR---DMIEQFLDIIRDEKCCEEPYVVK-EECAKILE--LEAIEEVAKEYKEETG---- 108 (344)
T ss_pred HHHHHHHHHHhcCCccccchHHH---HHHHhHHHHHcCCcccCCCeeee-hhhhhHHH--HHHHHHHHHHHHHhhC----
Confidence 66777777888999999988887 332211 1 11 11222222 2344566777766532
Q ss_pred CCCCCCCCCCCCeEEEEec-CCcccCcCCCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHhCCCCEEEE-----ecCC-
Q 027947 122 DFTGSGRISSRPVLVAASV-GSYGAYLADGSEYSG-DYGD--AVSLETLKEFHRRRVLILANSGADLIAF-----ETIP- 191 (216)
Q Consensus 122 ~~~~~~~~~~~~~~VaGsi-GP~g~~l~~gseY~g-~y~~--~~s~ee~~~~h~~qi~~l~~~gvD~l~~-----ET~p- 191 (216)
.+..|=+++ ||+--+.. .|.+ .|.+ ..-..++..+-++.++.+.++||++|-+ -|-|
T Consensus 109 ----------~~~~VKv~iTGP~tL~~~---~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~ 175 (344)
T PRK06052 109 ----------ETLEVRVCVTGPTELYLQ---EFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPE 175 (344)
T ss_pred ----------CCCCeEEEecCHHHHHHH---HcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCc
Confidence 222233333 78654322 2333 3432 1123566778888899999999999844 3333
Q ss_pred ---CHHHHHHHHHHH
Q 027947 192 ---NKLEAKVFSKYV 203 (216)
Q Consensus 192 ---~~~Ea~a~~~a~ 203 (216)
+..++..++..+
T Consensus 176 ~~~~~~~~i~Al~~a 190 (344)
T PRK06052 176 IQFSDDEIISALTVA 190 (344)
T ss_pred cccCHHHHHHHHHHH
Confidence 556666666655
No 169
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=37.55 E-value=57 Score=28.86 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCEEE------------EecCCCHHHHHHHHHHHHHh
Q 027947 171 RRRVLILANSGADLIA------------FETIPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~------------~ET~p~~~Ea~a~~~a~~~~ 206 (216)
.+|++.+.++|+|+|. .+|..+++|+...++.+.+.
T Consensus 160 ~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~a 207 (268)
T PF09370_consen 160 EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDA 207 (268)
T ss_dssp HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHH
Confidence 4678888999999996 67899999988877776654
No 170
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=37.27 E-value=1.6e+02 Score=27.73 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCEEEEecCC-CHHHHHHHHHHHHHh-CCccccc
Q 027947 170 HRRRVLILANSGADLIAFETIP-NKLEAKVFSKYVIIN-QRKMLLK 213 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p-~~~Ea~a~~~a~~~~-~~~~~~~ 213 (216)
..++++.|.++|+|+|.+-+-. +-.-+...++.+++. .+.||+-
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE
Confidence 4467889999999999987632 334455566777665 4666653
No 171
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=37.19 E-value=1.4e+02 Score=21.64 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCEEEEec--CCCHHHHHHHHHHHHHhCCc
Q 027947 169 FHRRRVLILANSGADLIAFET--IPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET--~p~~~Ea~a~~~a~~~~~~~ 209 (216)
.|.+.+..+++.|. -++.|- ..++.|++.+++++++.+..
T Consensus 74 ~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 74 SHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp GHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 38889999999999 556694 56899999999999998743
No 172
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=37.03 E-value=2.6e+02 Score=23.66 Aligned_cols=110 Identities=21% Similarity=0.107 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
..+...++-+..++.|.+.|-|..+... |.+ ++++.++++- + ....
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-------g~s----E~~lG~al~~-------~----------------~~R~ 72 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGD-------GES----EELLGEALKE-------R----------------GPRE 72 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCC-------CCC----HHHHHHHHhc-------c----------------CCcC
Confidence 4577888888899999999988865432 112 2233333321 0 0134
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC----HHHHHHHHHHHHHhC
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPN----KLEAKVFSKYVIINQ 207 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~----~~Ea~a~~~a~~~~~ 207 (216)
+++|+.=+||..... + ..+.+.++......++.|.-.-+|++++--... ..|+..+++.+++.+
T Consensus 73 ~~~i~tK~~~~~~~~---------~--~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G 140 (285)
T cd06660 73 EVFIATKVGPRPGDG---------R--DLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEG 140 (285)
T ss_pred cEEEEeeecCCCCCC---------C--CCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 789998888753210 1 257788888888888888666789998876433 456666666665544
No 173
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=36.73 E-value=1.6e+02 Score=27.25 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC---CCCEEE
Q 027947 149 DGSEYSGDYGDAVSLETLKEFHRRRVLILANS---GADLIA 186 (216)
Q Consensus 149 ~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~---gvD~l~ 186 (216)
+|..|.|. .+..++.+.+.+-++.+.++ |+++++
T Consensus 139 DG~~~~g~----~~~~~a~~rl~esL~eI~~~~~~~v~~~i 175 (378)
T TIGR02635 139 DGTNYPGQ----DDFRSRKDRLEESLAEVYEHLGADMRLLI 175 (378)
T ss_pred CcCcCCcc----cCHHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 45455542 35566666666666665543 566654
No 174
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=36.64 E-value=63 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHH
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKY 202 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a 202 (216)
+.+++.+ -.+++++|.++|++.|++|-+|.. -++.+.+.
T Consensus 177 ~~~~a~~-li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~ 215 (332)
T PLN02424 177 TAESAVK-VVETALALQEAGCFAVVLECVPAP-VAAAITSA 215 (332)
T ss_pred CHHHHHH-HHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHh
Confidence 5555555 456789999999999999999976 44444443
No 175
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.46 E-value=3e+02 Score=24.32 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
-|.++++++-.+.++.|.+.+++++++=.=. =-..+++.+|+.-+.||+
T Consensus 47 ks~e~I~~~~~~i~~~l~~~~ik~lVIACNT---ASa~al~~LR~~~~iPVv 95 (269)
T COG0796 47 KSEEEIRERTLEIVDFLLERGIKALVIACNT---ASAVALEDLREKFDIPVV 95 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEecch---HHHHHHHHHHHhCCCCEE
Confidence 6899999999999999999999999865321 124577788887777775
No 176
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=36.33 E-value=50 Score=31.96 Aligned_cols=27 Identities=41% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHHh
Q 027947 180 SGADLIAFET-IPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 180 ~gvD~l~~ET-~p~~~Ea~a~~~a~~~~ 206 (216)
..+|+|+.|| -|++.+++...+++++.
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~ 405 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSK 405 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4689999999 99999999999999875
No 177
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.32 E-value=3.1e+02 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCEEEEecC-----C-----CH-HHHHHHHHHHHHhCCccccccc
Q 027947 171 RRRVLILANSGADLIAFETI-----P-----NK-LEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~-----p-----~~-~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
.+.++.+.++|+|.|-+-.. + +. .....+++.+++..+.||+-|.
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl 172 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL 172 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe
Confidence 44566677788998876321 1 11 2255677888887788988773
No 178
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.13 E-value=3e+02 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIA 186 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~ 186 (216)
.+.++..++ ++.|.+.|+|+|-
T Consensus 225 ~~~~e~~~l----a~~l~~~G~d~i~ 246 (327)
T cd02803 225 LTLEEAIEI----AKALEEAGVDALH 246 (327)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEE
Confidence 355655444 7778888999885
No 179
>PLN02892 isocitrate lyase
Probab=36.00 E-value=53 Score=32.05 Aligned_cols=27 Identities=41% Similarity=0.388 Sum_probs=24.7
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHHh
Q 027947 180 SGADLIAFET-IPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 180 ~gvD~l~~ET-~p~~~Ea~a~~~a~~~~ 206 (216)
..+|+||.|| -|++.+++...+.+++.
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~ 426 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAK 426 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHh
Confidence 4689999999 89999999999999985
No 180
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.94 E-value=76 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccc
Q 027947 169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKK 214 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~ 214 (216)
.--.||..|.++|+|++- =|+|+.+.+.++-+ +++..+.||+--
T Consensus 37 aTv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~-Ik~~~~vPLVaD 80 (361)
T COG0821 37 ATVAQIKALERAGCDIVR-VTVPDMEAAEALKE-IKQRLNVPLVAD 80 (361)
T ss_pred HHHHHHHHHHHcCCCEEE-EecCCHHHHHHHHH-HHHhCCCCEEEE
Confidence 456789999999999987 48999977665554 555557888744
No 181
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=35.59 E-value=78 Score=32.63 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=47.0
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHH---HHHHHHHHHHhCCccc
Q 027947 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLE---AKVFSKYVIINQRKML 211 (216)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~E---a~a~~~a~~~~~~~~~ 211 (216)
.+=+.|.-+|+.+.++- ..| -.+||...++.|.++|+-+|.+-.|.-+.- +.-.+.++|+.-++|+
T Consensus 672 v~EatiCYTGDildp~r---~kY--------~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPI 740 (1149)
T COG1038 672 VAEATICYTGDILDPGR---KKY--------TLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPI 740 (1149)
T ss_pred eEEEEEEeccccCCCCc---ccc--------cHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcCCce
Confidence 45566666777665431 111 247899999999999999999988876544 4556667788778886
No 182
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.57 E-value=1.5e+02 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCEEEEec
Q 027947 171 RRRVLILANSGADLIAFET 189 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET 189 (216)
-++++..+++|+|.|++|.
T Consensus 137 i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 137 IKLINKDLEAGADYVIIEG 155 (237)
T ss_pred HHHHHHHHHCCCcEEEEee
Confidence 4467788999999999998
No 183
>PRK12412 pyridoxal kinase; Reviewed
Probab=35.52 E-value=1.1e+02 Score=26.19 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 168 EFHRRRVLILANS-GADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 168 ~~h~~qi~~l~~~-gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
++.+.|++.+.+. .+|.|..--+++.+-+..+++.+++.+.+
T Consensus 58 ~~i~~q~~~l~~d~~~~~ikiG~l~~~~~v~~i~~~~~~~~~~ 100 (268)
T PRK12412 58 STLKPQLETTIEGVGVDALKTGMLGSVEIIEMVAETIEKHNFK 100 (268)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 4566788887663 69999999999999999999999987644
No 184
>PRK07534 methionine synthase I; Validated
Probab=34.84 E-value=3.5e+02 Score=24.48 Aligned_cols=66 Identities=6% Similarity=0.032 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHH-HHHHHHHHHhCCc
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEA-KVFSKYVIINQRK 209 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea-~a~~~a~~~~~~~ 209 (216)
+.|++|+-++-+-|.. .+ ..+.+++.+.... ...++|.|.+-.......+ ..+++..+...++
T Consensus 170 ~~Pv~vSft~~~~g~l-~~----------G~~~~~~~~~~~~-----~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~ 233 (336)
T PRK07534 170 GMPWCGTMSFDTAGRT-MM----------GLTPADLADLVEK-----LGEPPLAFGANCGVGASDLLRTVLGFTAQGPER 233 (336)
T ss_pred CCeEEEEEEECCCCee-CC----------CCcHHHHHHHHHh-----cCCCceEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999998765533 22 2466666665321 1346699999888767666 5555555555456
Q ss_pred ccc
Q 027947 210 MLL 212 (216)
Q Consensus 210 ~~~ 212 (216)
|+.
T Consensus 234 pl~ 236 (336)
T PRK07534 234 PII 236 (336)
T ss_pred eEE
Confidence 654
No 185
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.71 E-value=3e+02 Score=23.68 Aligned_cols=26 Identities=19% Similarity=-0.001 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHhcCCeeecccc
Q 027947 52 SSPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 52 ~~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
.+++.+.+.-+.-.++|+|.|..|-.
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~ 133 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLS 133 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 46777777777777889999988765
No 186
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=34.66 E-value=3.7e+02 Score=24.71 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHhcCCeee
Q 027947 53 SPHLVRKVHLDYLDAGANIII 73 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~ 73 (216)
+|+...++-.+++.+|+|+|.
T Consensus 139 ~~~~~a~~~~~~~~gGvD~IK 159 (364)
T cd08210 139 SAAELAELAYAFALGGIDIIK 159 (364)
T ss_pred CHHHHHHHHHHHHhcCCCeee
Confidence 678899999999999999985
No 187
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=34.48 E-value=2.9e+02 Score=23.48 Aligned_cols=46 Identities=17% Similarity=0.058 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCC--CEEEEe-----cCCCHHHHHHHHHHHHHhCCccccc
Q 027947 167 KEFHRRRVLILANSGA--DLIAFE-----TIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gv--D~l~~E-----T~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
...+.+.++.|.+.|+ |.|-+. ..|++.+++..++.+.+.+ +||.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g-~pi~i 187 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLG-LEIQI 187 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcC-CceEE
Confidence 3467778888888765 777665 2378889999999998875 67654
No 188
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=34.40 E-value=3.6e+02 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 027947 88 GFSTEEAEALLRRSVEIACEAREI 111 (216)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~ 111 (216)
.++.++++++++.-++-|+.|.+.
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~A 171 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREA 171 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 477788999999999999888754
No 189
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.21 E-value=3.7e+02 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.+++.++ ++.|.+.|+|+|-+
T Consensus 232 ~~~~e~~~~----~~~l~~~gvd~i~v 254 (361)
T cd04747 232 DTPDELEAL----LAPLVDAGVDIFHC 254 (361)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEe
Confidence 466666444 66677889999855
No 190
>PRK12616 pyridoxal kinase; Reviewed
Probab=34.15 E-value=1.2e+02 Score=26.04 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILAN-SGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~-~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++.+.|++.+.+ -.+|.|.+--+++.+-++.+.+.+++...+|+
T Consensus 60 ~~i~~ql~~l~~d~~~~aikiG~l~s~~~i~~i~~~l~~~~~~~v 104 (270)
T PRK12616 60 DTIRAQLSTIVDGIGVDAMKTGMLPTVDIIELAADTIKEKQLKNV 104 (270)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCE
Confidence 456677888765 47899999999999999999999998764433
No 191
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.72 E-value=61 Score=28.38 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++....+.|+|.|.+..|+ +++++.+++.++. +.|+
T Consensus 194 ea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~--~ipi 229 (268)
T cd01572 194 QLKEALEAGADIIMLDNMS-PEELREAVALLKG--RVLL 229 (268)
T ss_pred HHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC--CCcE
Confidence 3444456899999999997 7788877776643 3454
No 192
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=33.14 E-value=41 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHhcCCeeecccc
Q 027947 52 SSPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 52 ~~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
..++.+.+.+...++.|.+||+.|.=
T Consensus 67 t~~~~~~~~~~~~L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 67 TSSEAVAEYYEKALERGKHVVTANKG 92 (117)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEES-HH
T ss_pred CCchHHHHHHHHHHHCCCeEEEECHH
Confidence 56788999999999999999998865
No 193
>PRK11430 putative CoA-transferase; Provisional
Probab=32.47 E-value=2e+02 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
+..|+-..-+++ |-+.|||+.+|-- +..+.+.|++.+.+
T Consensus 78 Lk~~~Gr~~~~~--L~~~ADVvien~r---pg~~~rlGl~y~~L 116 (381)
T PRK11430 78 LKNDHDKSIFIN--MLKQADVLAENFR---PGTMEKLGFSWETL 116 (381)
T ss_pred CCCHHHHHHHHH--HHhcCCEEEeCCC---ccHHHHcCCCHHHH
Confidence 455654433332 2456999998865 66777899986654
No 194
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=32.37 E-value=3.5e+02 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCeeec-cccccCHHHHHhcCCCHHHHHHHHHHHHH
Q 027947 58 RKVHLDYLDAGANIIIT-ASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (216)
Q Consensus 58 ~~iH~~Yl~AGadiI~T-nTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (216)
.+..+.++++|||+|.- -++. +. .-++++..+++..-..+
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a-~~-----~~isp~~f~e~~~p~~k 214 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTA-SP-----ELISPEFYEEFALPYHK 214 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCc-cc-----cccCHHHHHHHHHHHHH
Confidence 34556677789998854 3342 21 11355555555444443
No 195
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.95 E-value=67 Score=27.93 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCHHHHHHHH-------------HHHHHHHHhCCCCEEEEecCC
Q 027947 152 EYSGDYGDAVSLETLKEFH-------------RRRVLILANSGADLIAFETIP 191 (216)
Q Consensus 152 eY~g~y~~~~s~ee~~~~h-------------~~qi~~l~~~gvD~l~~ET~p 191 (216)
||.+-|+++...|.+...- .+|++.++++|+|.|+.-|+-
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred EecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 3444455555555554432 358899999999999877764
No 196
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=31.73 E-value=3.8e+02 Score=23.95 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=28.8
Q ss_pred ccCCChHHHHH-----------HHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 027947 49 CLVSSPHLVRK-----------VHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109 (216)
Q Consensus 49 ~ll~~pe~V~~-----------iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~ 109 (216)
.+.++||.+.+ .-+.++++|||+|.-..=.++ -++++..+++..-..+-..+..
T Consensus 169 ~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~-------~lsp~~f~ef~~P~~k~i~~~i 233 (346)
T PRK00115 169 MMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAG-------ALSPADYREFVLPYMKRIVAEL 233 (346)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-------cCCHHHHHHHHHHHHHHHHHHH
Confidence 34678864333 334455689998853211111 2566666666655555444444
No 197
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=31.72 E-value=42 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeecccc
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
+|+.|...-+--.++|||+|.|+|=
T Consensus 144 ~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 144 KPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred cHHHHHHHHHHHHHhCCCEEEecCC
Confidence 4668999999999999999999886
No 198
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.64 E-value=50 Score=29.42 Aligned_cols=29 Identities=14% Similarity=-0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCHHHH
Q 027947 168 EFHRRRVLILANSGADLIAFETIPNKLEA 196 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea 196 (216)
++-...+++.+..|+|.|++||=|+..+|
T Consensus 217 e~v~~larAAvA~GaDGl~iEvHpdP~~A 245 (281)
T PRK12457 217 RQVLDLARAGMAVGLAGLFLEAHPDPDRA 245 (281)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 34455677788899999999999886553
No 199
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=31.35 E-value=1.1e+02 Score=22.96 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=31.6
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcc
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~ 210 (216)
+..++|+++|||.. .+.|.+.|+..+..+....+.|+...++.+=....+|
T Consensus 63 ~c~vvi~~~IG~~a-----------------------------~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~~~ 113 (119)
T TIGR02663 63 DCAILYCLAIGGPA-----------------------------AAKVVAAKIHPIKVNEPESISELLERLQKMLKGNPPP 113 (119)
T ss_pred CCcEEEEhhcCccH-----------------------------HHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCCCH
Confidence 46899999999853 2345556777765555455666555444433334444
Q ss_pred cc
Q 027947 211 LL 212 (216)
Q Consensus 211 ~~ 212 (216)
.|
T Consensus 114 w~ 115 (119)
T TIGR02663 114 WL 115 (119)
T ss_pred HH
Confidence 44
No 200
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.25 E-value=3.9e+02 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.+++.++ ++.|.+.|+|+|-+
T Consensus 221 ~~~~e~~~i----~~~Le~~G~d~i~v 243 (353)
T cd02930 221 STWEEVVAL----AKALEAAGADILNT 243 (353)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEe
Confidence 466666544 77788899999976
No 201
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=31.13 E-value=1.1e+02 Score=30.03 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHh---CCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 167 KEFHRRRVLILAN---SGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 167 ~~~h~~qi~~l~~---~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
.+.|+.|++++.. .|..-|+|-.+.++.|++.+..+++.
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 408 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEI 408 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678889998855 48899999999999999999888875
No 202
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=30.75 E-value=3.7e+02 Score=23.60 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=29.4
Q ss_pred cCCChHHH-----------HHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 027947 50 LVSSPHLV-----------RKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEARE 110 (216)
Q Consensus 50 ll~~pe~V-----------~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~ 110 (216)
+.++||.+ .+..+.++++|+|+|.... .+.. -++++..+++..-..+-..+++.
T Consensus 166 ~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d--~~~~-----~isp~~f~e~~~P~~k~i~~~i~ 230 (343)
T PF01208_consen 166 LYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD--SSGS-----LISPEMFEEFILPYLKKIIDAIK 230 (343)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE--TTGG-----GS-HHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--cccC-----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45788643 3456677789999887666 2222 13556666665555544444444
No 203
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=30.59 E-value=2.4e+02 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
+.+|+-..-+++ |-+.|||+++|-- +..+++.|++.+.+
T Consensus 73 Lk~~~g~~~l~~--Lv~~ADVvien~r---pg~~~rlGL~~~~L 111 (415)
T TIGR03253 73 TKTPEGKEVLEE--LIKKADVMVENFG---PGALDRMGFTWEYI 111 (415)
T ss_pred CCCHHHHHHHHH--HHhhCCEEEECCC---CChHHHcCCCHHHH
Confidence 456654433333 2456999998853 56677899986644
No 204
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.35 E-value=1.1e+02 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.--.|++.|.++|+|++- =|+|+..+++++ ..+++..+.|++
T Consensus 35 atv~QI~~L~~aGceiVR-vavp~~~~A~al-~~I~~~~~iPlV 76 (346)
T TIGR00612 35 STVAQIRALEEAGCDIVR-VTVPDRESAAAF-EAIKEGTNVPLV 76 (346)
T ss_pred HHHHHHHHHHHcCCCEEE-EcCCCHHHHHhH-HHHHhCCCCCEE
Confidence 356689999999999998 488999776655 455556668876
No 205
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.21 E-value=96 Score=27.41 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
+|+...++.|+|.|.+..| ++++++.+++.++
T Consensus 200 eea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~ 231 (277)
T PRK05742 200 DELRQALAAGADIVMLDEL-SLDDMREAVRLTA 231 (277)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC
Confidence 3455556789999999876 5788888887653
No 206
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.20 E-value=4e+02 Score=23.76 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEe--------cCCcccCcCCCCCCCCCCCC
Q 027947 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAAS--------VGSYGAYLADGSEYSGDYGD 159 (216)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGs--------iGP~g~~l~~gseY~g~y~~ 159 (216)
.++.++++++++.-++-|+.|.+. .=+-|-|-+. +.|.-....| ||-|
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~a------------------GfDgVeih~a~gyLl~qFlsp~~N~R~D--~yGG---- 193 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEA------------------GFDGVQIHAAHGYLLSQFLSPLTNKRTD--EYGG---- 193 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHc------------------CCCEEEEchhhhhHHHHhcCCcCCCCCc--cCCC----
Confidence 467788899999999888887643 0123444333 3454332222 4433
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCEEEEecC---------CCHHHHHHHHHHHHHhC
Q 027947 160 AVSLETLKEFHRRRVLILANS-GADLIAFETI---------PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 160 ~~s~ee~~~~h~~qi~~l~~~-gvD~l~~ET~---------p~~~Ea~a~~~a~~~~~ 207 (216)
|.+.-..|-.+.++++.++ |-|+.+.=-+ .+..|+..+++.+.+.+
T Consensus 194 --slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~G 249 (338)
T cd04733 194 --SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAG 249 (338)
T ss_pred --CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcC
Confidence 6788888888888888653 5565332222 36788888888888764
No 207
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=30.04 E-value=1.5e+02 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCEEEEec-CC----------CHHHHHHHHHHHHHhCCccccccc
Q 027947 170 HRRRVLILANSGADLIAFET-IP----------NKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p----------~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
+.+.++.+.+.|+|.|-+-. .| +...+..+++++++..+.|+..|.
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl 169 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKL 169 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEe
Confidence 44457777888999886542 22 445677888888887788888764
No 208
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=30.00 E-value=1.4e+02 Score=28.25 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCcccc
Q 027947 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.++|.+.++.|++.|||-|.|-.|. +..++-..++++|+....||.
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~ 203 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVE 203 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeE
Confidence 3678889999999999999998776 678888899999987777763
No 209
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=29.80 E-value=48 Score=30.81 Aligned_cols=72 Identities=14% Similarity=0.317 Sum_probs=47.0
Q ss_pred CCCCCCCh--hHHHHHHhccCCeEEEecchHHHHHHC-CCCCCCccccccccCCChHHHHHHHHHHHHhcCC------ee
Q 027947 2 VSGSNGTT--SFMTDFLQKCGGYSVVDGGFATELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGAN------II 72 (216)
Q Consensus 2 ~~~~~~~~--~~l~~~l~~~~~~lllDGg~gT~L~~~-g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGad------iI 72 (216)
+.|+++|+ .-|..++++ -+-+|+-|+|+-.+... |++....+.. .+.-+..+++-..+-+-|+. .+
T Consensus 195 lGGaKvsdKi~vl~~Ll~k-vD~liigG~ma~tFl~A~G~~iG~s~~e----~~~i~~a~~ll~~~~~~g~~i~lPvD~~ 269 (384)
T PF00162_consen 195 LGGAKVSDKIGVLENLLDK-VDKLIIGGGMANTFLKAQGYEIGKSLVE----EDLIEEAKELLEKAKDRGVKIVLPVDFV 269 (384)
T ss_dssp EESS-HHHHHHHHHHHTTT-SSEEEEETTHHHHHHHHTTHBBTTSSCH----GGGHHHHHHHHHHHHHTT-EEE--SEEE
T ss_pred EeCCchHhHHHHHHHHHHH-HHHHeeChhHHHHHHHHcCCcccccchh----hhhHHHHHHHHHHHHhcCceEEEEEEEe
Confidence 46888877 557778886 57789999999766654 8887654432 23446777777777776765 45
Q ss_pred eccccc
Q 027947 73 ITASYQ 78 (216)
Q Consensus 73 ~TnTy~ 78 (216)
.+..|.
T Consensus 270 v~~~~~ 275 (384)
T PF00162_consen 270 VADEFS 275 (384)
T ss_dssp EESSSS
T ss_pred ehhccc
Confidence 555543
No 210
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.48 E-value=93 Score=33.05 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=45.6
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhCCccc
Q 027947 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~~~~~ 211 (216)
.+-|+|.-+|+.+.+.+ ...-.+||.+.++.+.+.|+|.|.+--+. ...++..++.++++.-+.|+
T Consensus 667 ~~~~~i~yt~~~~d~~~-----------~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi 735 (1143)
T TIGR01235 667 VVEAAICYTGDILDPAR-----------PKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPI 735 (1143)
T ss_pred EEEEEEEEeccCCCcCC-----------CCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 56666666665543321 11124678888999999999999887554 67788888888887655554
No 211
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.42 E-value=1e+02 Score=27.44 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHH
Q 027947 172 RRVLILANSGADLIAFETIPNKLEAKVFSKYV 203 (216)
Q Consensus 172 ~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~ 203 (216)
+|++..+++|+|.|++--|+ ++|++.+++.+
T Consensus 199 e~~~eAl~agaDiImLDNm~-~e~~~~av~~l 229 (280)
T COG0157 199 EEAEEALEAGADIIMLDNMS-PEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHcCCCEEEecCCC-HHHHHHHHHHh
Confidence 34555667999999999987 78988888876
No 212
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.34 E-value=4.1e+02 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCeeeccccccCHH
Q 027947 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (216)
Q Consensus 55 e~V~~iH~~Yl~AGadiI~TnTy~a~~~ 82 (216)
+...+.|.+..+.|+.+|+|-.-..++.
T Consensus 35 ~~~~~~y~~rA~gG~glii~~~~~v~~~ 62 (338)
T cd04733 35 PELIRLYRRWAEGGIGLIITGNVMVDPR 62 (338)
T ss_pred HHHHHHHHHHhCCCceEEEEeeEEECcc
Confidence 5667888888888999876554333333
No 213
>PRK10200 putative racemase; Provisional
Probab=29.27 E-value=3.4e+02 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccccc
Q 027947 164 ETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 164 ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
+....+..+.++.|.++|||+|++=.- -+-.+.+.+++..+.|++.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~~~iviaCN----Tah~~~~~l~~~~~iPii~ 103 (230)
T PRK10200 58 DKTGDILAEAALGLQRAGAEGIVLCTN----TMHKVADAIESRCSLPFLH 103 (230)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCc----hHHHHHHHHHHhCCCCEee
Confidence 455677788899999999999996432 2344457777776778764
No 214
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.21 E-value=4.1e+02 Score=23.56 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=64.0
Q ss_pred eEEEecchHHHHHHCCCCCC-----------CccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCC
Q 027947 22 YSVVDGGFATELERHGADLN-----------DPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (216)
Q Consensus 22 ~lllDGg~gT~L~~~g~~~~-----------~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~ 90 (216)
+-++||-+-..|+..|.-.. ..+++ .+...++|..+++ .+||||||..+- +.+... ..|..
T Consensus 118 vgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T-~~yvf~~e~A~~M----~~AGaDiiv~H~-GlT~gG--~~Ga~ 189 (268)
T PF09370_consen 118 VGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFT-TAYVFNEEQARAM----AEAGADIIVAHM-GLTTGG--SIGAK 189 (268)
T ss_dssp GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE---EE-SHHHHHHH----HHHT-SEEEEE--SS-----------
T ss_pred ceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCee-eeeecCHHHHHHH----HHcCCCEEEecC-CccCCC--CcCcc
Confidence 44789999999999875432 12232 2334566665554 599999988542 111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHH
Q 027947 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (216)
Q Consensus 91 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h 170 (216)
...-+..+++++.+..+...+ .++.+.|..-=||. .+++++...+
T Consensus 190 ---~~~sl~~a~~~~~~i~~aa~~---------------v~~dii~l~hGGPI-----------------~~p~D~~~~l 234 (268)
T PF09370_consen 190 ---TALSLEEAAERIQEIFDAARA---------------VNPDIIVLCHGGPI-----------------ATPEDAQYVL 234 (268)
T ss_dssp ----S--HHHHHHHHHHHHHHHHC---------------C-TT-EEEEECTTB------------------SHHHHHHHH
T ss_pred ---ccCCHHHHHHHHHHHHHHHHH---------------hCCCeEEEEeCCCC-----------------CCHHHHHHHH
Confidence 112344455555555554322 23456666555664 2567777776
Q ss_pred HHHHHHHHhCCCCEEEE-ecCCCHHHHHHHHHHHHHh
Q 027947 171 RRRVLILANSGADLIAF-ETIPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~-ET~p~~~Ea~a~~~a~~~~ 206 (216)
+.- .|+|.++- .+|-.+.-=+++.+.++++
T Consensus 235 ~~t------~~~~Gf~G~Ss~ERlP~E~ai~~~~~~F 265 (268)
T PF09370_consen 235 RNT------KGIHGFIGASSMERLPVERAITETVRAF 265 (268)
T ss_dssp HH-------TTEEEEEESTTTTHHHHHHHHHHHHHHH
T ss_pred hcC------CCCCEEecccchhhccHHHHHHHHHHHh
Confidence 644 45666653 3555444445555555554
No 215
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.53 E-value=61 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHH
Q 027947 167 KEFHRRRVLILANSGADLIAFETIPNKLEA 196 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea 196 (216)
+++-....++.+.+|+|.|++|+=|+..++
T Consensus 208 r~~v~~la~AAvA~GadGl~iEvHpdP~~A 237 (264)
T PRK05198 208 REFVPVLARAAVAVGVAGLFIETHPDPDNA 237 (264)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 345566777888899999999999987654
No 216
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.32 E-value=1.3e+02 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
+++.+.++|+|++.+=-.........+++.+++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~ 104 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKE 104 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCE
Confidence 6777888999999765444444556777888876643
No 217
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=28.31 E-value=1.8e+02 Score=24.59 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 168 EFHRRRVLILAN-SGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 168 ~~h~~qi~~l~~-~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
++.++|++++.+ -.+|.|-+-.+.+..-+..+++.+++.+.+|+
T Consensus 53 ~~~~~q~~~~~~d~~~~aikiG~l~~~~~~~~i~~~~~~~~~~~v 97 (254)
T TIGR00097 53 DFVEAQLDAVFSDIPVDAAKTGMLASAEIVEAVARKLREYPVRPL 97 (254)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhcCCCcE
Confidence 567888998865 57999999999999889999999988754334
No 218
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=28.20 E-value=3.1e+02 Score=25.20 Aligned_cols=95 Identities=24% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEec--------CCcccCcCCCCCCCCCCCC
Q 027947 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASV--------GSYGAYLADGSEYSGDYGD 159 (216)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsi--------GP~g~~l~~gseY~g~y~~ 159 (216)
-++.+++++++++-++-|+.|.+. ++ +-|-|-|+= .|.-.-..| ||-|
T Consensus 138 ~mt~~eI~~ii~~f~~AA~rA~~A----------GF--------DgVEIH~AhGYLi~qFlsp~tN~RtD--~YGG---- 193 (363)
T COG1902 138 ELTEEEIEEVIEDFARAARRAKEA----------GF--------DGVEIHGAHGYLLSQFLSPLTNKRTD--EYGG---- 193 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHc----------CC--------CEEEEeeccchHHHHhcCCccCCCCC--ccCC----
Confidence 367788999999999999998764 11 234444443 343333333 4444
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCE-E-----EEec----CCCHHHHHHHHHHHHHhCC
Q 027947 160 AVSLETLKEFHRRRVLILANS-GADL-I-----AFET----IPNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 160 ~~s~ee~~~~h~~qi~~l~~~-gvD~-l-----~~ET----~p~~~Ea~a~~~a~~~~~~ 208 (216)
|+|.-..|-++-+++..++ |.|+ | ..|+ -.++.|...+++.+++.+.
T Consensus 194 --SlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~ 251 (363)
T COG1902 194 --SLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGL 251 (363)
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCC
Confidence 6788888888888877553 5565 2 1233 3467788888888888763
No 219
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=28.18 E-value=98 Score=27.92 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=25.0
Q ss_pred HHHHHHh------CCCCEEEEecC--------CCHHHHHHHHHHHH
Q 027947 173 RVLILAN------SGADLIAFETI--------PNKLEAKVFSKYVI 204 (216)
Q Consensus 173 qi~~l~~------~gvD~l~~ET~--------p~~~Ea~a~~~a~~ 204 (216)
|+...++ +|+|.|++..| .++.+++.++..++
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~ 260 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN 260 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC
Confidence 4444567 89999999999 36888888887665
No 220
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=28.12 E-value=61 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCHHHH
Q 027947 168 EFHRRRVLILANSGADLIAFETIPNKLEA 196 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea 196 (216)
++-....++.+.+|+|.|++||=|+..++
T Consensus 201 ~~v~~la~AAvA~GaDGl~iEvHpdP~~A 229 (258)
T TIGR01362 201 EFVPTLARAAVAVGIDGLFMETHPDPKNA 229 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCcccc
Confidence 44455677778889999999999987654
No 221
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.88 E-value=4.3e+02 Score=23.46 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.+++.++ ++.|.+.|+|+|-+
T Consensus 238 ~~~~e~~~i----a~~Le~~gvd~iev 260 (336)
T cd02932 238 WDLEDSVEL----AKALKELGVDLIDV 260 (336)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEE
Confidence 355555443 67777888998863
No 222
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=27.83 E-value=42 Score=24.14 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCCCCChhHHHHHHhccCCeEEEecchHHHH
Q 027947 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATEL 33 (216)
Q Consensus 3 ~~~~~~~~~l~~~l~~~~~~lllDGg~gT~L 33 (216)
|+.+.+-+.|.++|.++++++..|||+-+..
T Consensus 43 Sae~m~a~eLv~FL~~rgKfi~~~~g~t~~~ 73 (78)
T PF10678_consen 43 SAEGMTADELVDFLEERGKFIPSDDGFTVNA 73 (78)
T ss_pred CCCCCCHHHHHHHHHHcCCEeecCCCEEEch
Confidence 5666677888888887788888888876543
No 223
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=27.61 E-value=1.6e+02 Score=25.50 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccc
Q 027947 168 EFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKK 214 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~ 214 (216)
+.|.+.++..++.|+.+++-.|=-+..|...+.+++++.+ .|++.+
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g-~~v~~a 124 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG-IAAVIA 124 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC-ccEEEE
Confidence 3477789999999999998666667778888887777643 666654
No 224
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=27.46 E-value=1.3e+02 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.-..|++.|.++|+|++- =|+|+..+++++-. +++....|++
T Consensus 43 atv~Qi~~L~~aGceiVR-vav~~~~~a~al~~-I~~~~~iPlv 84 (360)
T PRK00366 43 ATVAQIKRLARAGCEIVR-VAVPDMEAAAALPE-IKKQLPVPLV 84 (360)
T ss_pred HHHHHHHHHHHcCCCEEE-EccCCHHHHHhHHH-HHHcCCCCEE
Confidence 456789999999999998 48899977666554 4445568876
No 225
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.37 E-value=4.4e+02 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCeeecccc
Q 027947 55 HLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 55 e~V~~iH~~Yl~AGadiI~TnTy 77 (216)
+.+.+.-..++++|+++|.-.+=
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a 248 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTA 248 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEecc
Confidence 34566777788899998775443
No 226
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=27.25 E-value=40 Score=24.21 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCCCCChhHHHHHHhccCCeEEEecchHHHH
Q 027947 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATEL 33 (216)
Q Consensus 3 ~~~~~~~~~l~~~l~~~~~~lllDGg~gT~L 33 (216)
|..+.+-+.|.++|.++++++-.|||+-+..
T Consensus 41 Sa~~m~a~~Li~FL~~kgKfi~~~~gft~~~ 71 (77)
T TIGR03853 41 SAEGMTADELLQFLLKKGKFIESDGGFTTNA 71 (77)
T ss_pred ccccCCHHHHHHHHHHCCCEeecCCcEEECh
Confidence 5566677778888887778888888876543
No 227
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=27.12 E-value=4.5e+02 Score=23.42 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
+.+.+.++.+.++++|.+.|-|.....+. .|.+ ++++-++++- ... ....
T Consensus 41 ~~~~~~~~l~~A~~~Gin~~DTA~~YG~~-----~g~s----E~~lG~~l~~---~~~------------------~~Rd 90 (346)
T PRK09912 41 ALESQRAILRKAFDLGITHFDLANNYGPP-----PGSA----EENFGRLLRE---DFA------------------AYRD 90 (346)
T ss_pred CHHHHHHHHHHHHHCCCCEEEChhhhCCC-----CCCc----HHHHHHHHHh---ccc------------------CCCC
Confidence 44667889999999999999876654321 1323 3445555431 000 0134
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCC---CHHHHHHHHHHHHHhC
Q 027947 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKVFSKYVIINQ 207 (216)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p---~~~Ea~a~~~a~~~~~ 207 (216)
+++|+.=+|.... ++ .+ ....+.+.+++.....++.|--.-+|++.+-... .+.|...+++-+++.+
T Consensus 91 ~~~I~TK~g~~~~---~~-~~----~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G 160 (346)
T PRK09912 91 ELIISTKAGYDMW---PG-PY----GSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG 160 (346)
T ss_pred eEEEEEEecccCC---CC-cC----CCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6888887775210 10 11 1124788899999888888876779999988743 2455555555555544
No 228
>PLN02826 dihydroorotate dehydrogenase
Probab=26.81 E-value=4.6e+02 Score=24.51 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCC-eeeccccccCHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 027947 55 HLVRKVHLDYLDAGAN-IIITASYQATIQGF-------EAKGFSTEEAEALLRRSVEIACEAREI 111 (216)
Q Consensus 55 e~V~~iH~~Yl~AGad-iI~TnTy~a~~~~l-------~~~g~~~~~~~~l~~~av~lA~~A~~~ 111 (216)
+.+.++=+.-+++|+| ||.|||....+..+ ..-|+|- ..+-..+.+..+++++.
T Consensus 276 ~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~ 337 (409)
T PLN02826 276 EDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRL 337 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCC---ccccHHHHHHHHHHHHH
Confidence 4566666667899998 88899986433211 1224552 23444555665565543
No 229
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.73 E-value=73 Score=28.50 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHH
Q 027947 167 KEFHRRRVLILANSGADLIAFETIPNKLEA 196 (216)
Q Consensus 167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea 196 (216)
+++-....++.+..|+|.|++|+=|+..+|
T Consensus 219 Re~V~~larAAvA~GaDGlfiEvHpdP~~A 248 (290)
T PLN03033 219 RELIPCIARTAVAVGVDGIFMEVHDDPLSA 248 (290)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 455556778888899999999999886554
No 230
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=26.72 E-value=1.4e+02 Score=29.60 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh----CCcccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN----QRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~----~~~~~~ 212 (216)
--.|+..|.++|+|++- =|+|+..|++++-...+.. ...|++
T Consensus 43 tv~Qi~~l~~aGceiVR-vtv~~~~~a~~l~~I~~~l~~~G~~iPLV 88 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVR-LTTQGVREAENLMNINIGLRSQGYMVPLV 88 (611)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEE
Confidence 45689999999999998 4899999988877666654 356765
No 231
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=26.70 E-value=2.9e+02 Score=25.43 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=52.7
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC-CEEEEecCCCHHHHHHHHHHHHHhCCc
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGA-DLIAFETIPNKLEAKVFSKYVIINQRK 209 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gv-D~l~~ET~p~~~Ea~a~~~a~~~~~~~ 209 (216)
+.++.|.-.-|+...-+- -.|+. .+.+.+.+--.+.++.|.+.|. |+++===-+++.+...+-+.+.+..+-
T Consensus 121 ~ipIRIGVN~GSL~~~~~------~kyg~-~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~dy 193 (346)
T TIGR00612 121 GKAMRIGVNHGSLERRLL------EKYGD-ATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERSDY 193 (346)
T ss_pred CCCEEEecCCCCCcHHHH------HHcCC-CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCC
Confidence 467888665555443222 13442 4778888888889999999887 555545668899999999988888777
Q ss_pred cc
Q 027947 210 ML 211 (216)
Q Consensus 210 ~~ 211 (216)
|+
T Consensus 194 PL 195 (346)
T TIGR00612 194 PL 195 (346)
T ss_pred Cc
Confidence 75
No 232
>PRK03762 hypothetical protein; Provisional
Probab=26.68 E-value=71 Score=24.06 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=27.2
Q ss_pred eeecccccc-----CHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 027947 71 IIITASYQA-----TIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYD 114 (216)
Q Consensus 71 iI~TnTy~a-----~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~ 114 (216)
|+.+..+.. ++.-+ . +.+.+.+++.+|++-|.+-+++..+
T Consensus 44 V~~nG~~~i~~i~Id~~ll---~-D~e~LeDLI~aAiNdA~~k~~~~~~ 88 (103)
T PRK03762 44 VSANGKGEVIDISIDDSLL---E-DKESLQILLISAINDVYKMVEENKK 88 (103)
T ss_pred EEEEcCceEEEEEECHHHc---C-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666654 33333 1 5677899999999999888777554
No 233
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=26.59 E-value=6.7e+02 Score=25.21 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
.+.++...+ ++.|.+.|||+|-+
T Consensus 635 ~~~~~~~~~----~~~l~~~g~d~i~v 657 (765)
T PRK08255 635 NTPDDAVEI----ARAFKAAGADLIDV 657 (765)
T ss_pred CCHHHHHHH----HHHHHhcCCcEEEe
Confidence 466766544 77788899999976
No 234
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=26.53 E-value=4.9e+02 Score=23.58 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEe
Q 027947 60 VHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAAS 139 (216)
Q Consensus 60 iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGs 139 (216)
.-+..++-|+|+|.-=|++-. .+ .++|+..++++-++- ...-|+.+.|+
T Consensus 148 q~~~Li~gG~D~iLiET~~D~-----------l~----~KaA~~a~~~~~~~~----------------~~~LPv~~s~T 196 (311)
T COG0646 148 QVEGLIDGGADLILIETIFDT-----------LN----AKAAVFAAREVFEEL----------------GVRLPVMISGT 196 (311)
T ss_pred HHHHHHhCCCcEEEEehhccH-----------HH----HHHHHHHHHHHHHhc----------------CCcccEEEEEE
Confidence 334456679999998888622 11 345566666654321 13459999999
Q ss_pred cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcc
Q 027947 140 VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKM 210 (216)
Q Consensus 140 iGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~ 210 (216)
+-..|..+. | .+.+++ ...|...|+|.+-+-.=--..+++-.++-+.+..+..
T Consensus 197 i~~sG~tl~------G-----q~~~a~-------~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~ 249 (311)
T COG0646 197 ITDSGRTLS------G-----QTIEAF-------LNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAF 249 (311)
T ss_pred EecCceecC------C-----CcHHHH-------HHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCce
Confidence 999887663 1 233332 2345567899999887777788888888777765443
No 235
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=26.50 E-value=4.6e+02 Score=23.31 Aligned_cols=51 Identities=25% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec-CCC---------HHHHHHHHHHHHHhCC-----ccccccc
Q 027947 164 ETLKEFHRRRVLILANSGADLIAFET-IPN---------KLEAKVFSKYVIINQR-----KMLLKKF 215 (216)
Q Consensus 164 ee~~~~h~~qi~~l~~~gvD~l~~ET-~p~---------~~Ea~a~~~a~~~~~~-----~~~~~~~ 215 (216)
++..+.|...++.+.+ .+|+|-+.. .|+ ...+..+++++++... .||.-|.
T Consensus 144 ~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl 209 (327)
T cd04738 144 EDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKI 209 (327)
T ss_pred cccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEe
Confidence 3444456666666654 589887653 333 3567788888888654 8988774
No 236
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=26.47 E-value=5e+02 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
++.++..++ ++.|.++|||+|-+
T Consensus 249 ~~~e~~~~~----~~~l~~~gvD~l~v 271 (382)
T cd02931 249 RDLEEGLKA----AKILEEAGYDALDV 271 (382)
T ss_pred CCHHHHHHH----HHHHHHhCCCEEEe
Confidence 577776654 77888889999955
No 237
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.13 E-value=4.5e+02 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHh
Q 027947 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIIN 206 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~ 206 (216)
++..+.++.+.+.|+|.|.+= |+ -++.++...+..+++.
T Consensus 147 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 355566888888999988654 44 3677888888888764
No 238
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.07 E-value=1.4e+02 Score=25.86 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCEEEEe--cCCCHHHHHHHHHHHHHhC
Q 027947 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 169 ~h~~qi~~l~~~gvD~l~~E--T~p~~~Ea~a~~~a~~~~~ 207 (216)
.|.+++...+++|..+|. | --.++.|++.+++++++.+
T Consensus 79 ~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~ 118 (342)
T COG0673 79 LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAG 118 (342)
T ss_pred hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcC
Confidence 488899999999996664 7 4467999999999999874
No 239
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=25.98 E-value=3.9e+02 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQ 78 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~ 78 (216)
.+=|..+....+.+.++|+|.++-+.|.
T Consensus 59 ~DIg~tv~~~~~~~~~~gad~~Tvh~~~ 86 (216)
T cd04725 59 GDIPNTVAAAAEALLGLGADAVTVHPYG 86 (216)
T ss_pred CchHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 4668999999999999999999998875
No 240
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=1.9e+02 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=27.3
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHH
Q 027947 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKV 198 (216)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a 198 (216)
+-+++|++.+||-+ ...|.++|++++..+. .++.|+.-
T Consensus 65 gvdvvi~~~iG~~a-----------------------------~~~l~~~GIkv~~~~~-~~V~e~i~ 102 (121)
T COG1433 65 GVDVVIASNIGPNA-----------------------------YNALKAAGIKVYVAPG-GTVEEAIK 102 (121)
T ss_pred CCCEEEECccCHHH-----------------------------HHHHHHcCcEEEecCC-CCHHHHHH
Confidence 56899999999942 2345567899998888 66666443
No 241
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.80 E-value=1.1e+02 Score=26.67 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 177 LANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 177 l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
..++|+|.|.+..|+ ..+++.+++.++...+.|+
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~~~i~i 230 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGLPRVLL 230 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccCCCeEE
Confidence 345799999999986 5788877777764323343
No 242
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=25.31 E-value=4.5e+02 Score=22.74 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhC
Q 027947 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 168 ~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~ 207 (216)
++..+.++.+.+.|+|.|.+= |+ -++.++...++.+++..
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 455666788888999988654 44 46788888888888754
No 243
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.70 E-value=1.8e+02 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCEEEEecCC--CHHHHHHHHHHHHHhCCcccc
Q 027947 173 RVLILANSGADLIAFETIP--NKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p--~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.++.+.++|+|.+++=-.| ...|....++.+++.+.++++
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3667778999999875433 156888888999988766553
No 244
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=24.42 E-value=2.1e+02 Score=26.62 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Q 027947 165 TLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 165 e~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
+..++|++..+.+.+.++|.+++
T Consensus 368 ~~~~~h~~~~~~~~~~~~d~v~~ 390 (453)
T PRK10773 368 ESEACHRQVGEAAKAAGIDKVLS 390 (453)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEE
Confidence 45678999999999889988753
No 245
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.33 E-value=4.2e+02 Score=22.09 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCEEEEe---cCCCHHHHHHHHHHHHHhCC
Q 027947 170 HRRRVLILANSGADLIAFE---TIPNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E---T~p~~~Ea~a~~~a~~~~~~ 208 (216)
..+.++.+.+.|+|.|.+- -..+..+....+..+++...
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 4445777788999998762 23567888888888887654
No 246
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=24.31 E-value=4e+02 Score=24.71 Aligned_cols=39 Identities=5% Similarity=-0.137 Sum_probs=26.7
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCH
Q 027947 43 PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (216)
Q Consensus 43 ~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~ 81 (216)
|++.+...-..++...++-+..-++|||.|+-|-.--|.
T Consensus 115 pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 115 ILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred cEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 555442222567777777777778999999998875443
No 247
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.20 E-value=5.3e+02 Score=23.21 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAF 187 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~ 187 (216)
++.+|.. ..++.|.+.|||+|-+
T Consensus 232 ~~~ee~~----~i~~~L~~~GvD~I~V 254 (353)
T cd04735 232 IRMEDTL----ALVDKLADKGLDYLHI 254 (353)
T ss_pred CCHHHHH----HHHHHHHHcCCCEEEe
Confidence 4666654 4477888899999975
No 248
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.09 E-value=2.5e+02 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 165 e~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
+-.++-.+|++.|.+.|||.|-|-||+...-+..+++.+.
T Consensus 252 ~Gi~~a~e~i~~L~~~gv~GvH~yt~n~~~~~~~il~~l~ 291 (296)
T PRK09432 252 VGASIAMDMVKILSREGVKDFHFYTLNRAELTYAICHTLG 291 (296)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHhC
Confidence 4456788899999999999999999998877777776553
No 249
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=24.04 E-value=2.5e+02 Score=23.19 Aligned_cols=42 Identities=5% Similarity=-0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 170 HRRRVLILAN-SGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 170 h~~qi~~l~~-~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
...|++.+.+ ..+|.|..-.+++..-+..+.+.+++....|+
T Consensus 56 ~~~~l~~~~~~~~~~~i~~G~l~~~~~~~~i~~~~~~~~~~~v 98 (242)
T cd01169 56 VAAQLDAVLEDIPVDAIKIGMLGSAEIIEAVAEALKDYPDIPV 98 (242)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHHHHhCCCCcE
Confidence 5566777654 47899999999999999999999988633444
No 250
>PRK07475 hypothetical protein; Provisional
Probab=23.95 E-value=2.1e+02 Score=24.51 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccccc
Q 027947 164 ETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLK 213 (216)
Q Consensus 164 ee~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~ 213 (216)
+++.+...+-++.|.+.|||+|++-. .-+....+.+++....|++.
T Consensus 61 ~~~~~~l~~aa~~L~~~G~d~I~~~C----gt~~~~~~~l~~~~~VPv~~ 106 (245)
T PRK07475 61 PSLLDAFVAAARELEAEGVRAITTSC----GFLALFQRELAAALGVPVAT 106 (245)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEech----HHHHHHHHHHHHHcCCCEec
Confidence 45677788889999999999998643 33455666667666777765
No 251
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=23.65 E-value=1.9e+02 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHh---CCCCEEEEecCCCHHHHHHHHHHHHH
Q 027947 167 KEFHRRRVLILAN---SGADLIAFETIPNKLEAKVFSKYVII 205 (216)
Q Consensus 167 ~~~h~~qi~~l~~---~gvD~l~~ET~p~~~Ea~a~~~a~~~ 205 (216)
.+.|+.|++++.. .|..-|+|--+.+..|++.++++++.
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 4677888888644 58999999999999999999999986
No 252
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=23.55 E-value=2.6e+02 Score=24.54 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCEEEEe-cCC--------------CHHHHHHHHHHHHHhCCccccccc
Q 027947 170 HRRRVLILANSGADLIAFE-TIP--------------NKLEAKVFSKYVIINQRKMLLKKF 215 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~E-T~p--------------~~~Ea~a~~~a~~~~~~~~~~~~~ 215 (216)
|.+.++.+.+.|+|.|=+- ..| +.+.+..+++++++..+.||.-|.
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl 175 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKL 175 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4455677777789987553 222 345678889999988889998774
No 253
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.45 E-value=1.9e+02 Score=25.13 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCEEEEe---cCCCHHHHHHHHHHHHHhCCcccc
Q 027947 173 RVLILANSGADLIAFE---TIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 173 qi~~l~~~gvD~l~~E---T~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.++.+..+|.|++++. +.-+..++..++.+++..+-.|++
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lV 74 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVV 74 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 3677778999999998 455788888888888887766654
No 254
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=23.45 E-value=97 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.9
Q ss_pred ccCCChHHHHHHHHHHHHhcCCeeecccc
Q 027947 49 CLVSSPHLVRKVHLDYLDAGANIIITASY 77 (216)
Q Consensus 49 ~ll~~pe~V~~iH~~Yl~AGadiI~TnTy 77 (216)
.+|++.+.++++-+--++||||-|.|.|=
T Consensus 141 ~~L~~ee~i~~a~~~a~~aGADFVKTSTG 169 (257)
T PRK05283 141 GELKDEALIRKASEIAIKAGADFIKTSTG 169 (257)
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 44677767888888899999999999883
No 255
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=23.21 E-value=66 Score=28.46 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=32.8
Q ss_pred CeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCC
Q 027947 21 GYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGAN 70 (216)
Q Consensus 21 ~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGad 70 (216)
+.+||-||.||+|.-.......|+. .+...| .|.-+-+...++|.+
T Consensus 5 kavILAaG~GTRL~PlT~~~PKpLv---pV~gkP-iI~~vl~~l~~~Gi~ 50 (297)
T TIGR01105 5 KAVIPVAGLGMHMLPATKAIPKEML---PIVDKP-MIQYIVDEIVAAGIK 50 (297)
T ss_pred EEEEECCCCCcccCcccCCCCceee---EECCEE-HHHHHHHHHHHCCCC
Confidence 5799999999999655444333442 235667 777788888889977
No 256
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.17 E-value=1.4e+02 Score=27.48 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh----CCcccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIIN----QRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~----~~~~~~ 212 (216)
--.|+..|.++|+|++-+ |+|+.++++++-+..+.. ...|++
T Consensus 33 tv~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlV 78 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLV 78 (359)
T ss_dssp HHHHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EE
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCee
Confidence 346899999999999984 889998877666555541 457765
No 257
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=22.94 E-value=2e+02 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCCHHHH
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~ 94 (216)
+..|+-...+++ |-+.|||+++|-- +..+++.|++.+.+
T Consensus 73 Lk~~~Gr~~l~~--Li~~ADVvien~r---pg~~~rlGl~~e~L 111 (405)
T PRK03525 73 IFKDEGREAFLK--LMETTDIFIEASK---GPAFARRGITDEVL 111 (405)
T ss_pred CCCHHHHHHHHH--HHHhCCEEEECCC---ccHHHHcCCCHHHH
Confidence 456654433332 2356999998844 55677889986654
No 258
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=22.90 E-value=3e+02 Score=24.88 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEE-----e-cCCCHHHHHHHHHHHHHhCC--cccc
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAF-----E-TIPNKLEAKVFSKYVIINQR--KMLL 212 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~-----E-T~p~~~Ea~a~~~a~~~~~~--~~~~ 212 (216)
=.++.++.+.+-++.+.+..||+|++ . ..|+..-...+.+.+++.+. .|++
T Consensus 21 r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~ 79 (390)
T COG0420 21 RLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV 79 (390)
T ss_pred chHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence 47888999999999999999999954 4 46788888888888888763 5654
No 259
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.78 E-value=1.9e+02 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCEEEEecC-CCHHHHHHHHHHHHHhC-Ccccccc
Q 027947 171 RRRVLILANSGADLIAFETI-PNKLEAKVFSKYVIINQ-RKMLLKK 214 (216)
Q Consensus 171 ~~qi~~l~~~gvD~l~~ET~-p~~~Ea~a~~~a~~~~~-~~~~~~~ 214 (216)
.++++.|.++|+|+|.+.+- .....+...++.++... +.|++-.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g 275 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG 275 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe
Confidence 57899999999999988863 45555666677777654 5676543
No 260
>PRK05826 pyruvate kinase; Provisional
Probab=22.73 E-value=2e+02 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=31.4
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCC
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~ 208 (216)
.++..++.|+|+|++=-+.+.++++.+.+.+++...
T Consensus 178 ~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~ 213 (465)
T PRK05826 178 DIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGC 213 (465)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 355677899999999999999999999999988764
No 261
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.67 E-value=2.8e+02 Score=22.33 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCC---------HHHHHHHHHHHHHhCCcccc
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETIPN---------KLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~p~---------~~Ea~a~~~a~~~~~~~~~~ 212 (216)
..+.+...|.+..+.+.+..+|.+++|.+.- +-++++++..+-.....|++
T Consensus 42 ~~~Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ 101 (164)
T PRK00039 42 LPERLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVA 101 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3577888887777777778999999998643 33567766655555556654
No 262
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=22.29 E-value=6.7e+02 Score=23.71 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCCcc-ccccccCCChHHHHHHHHHHHHhcCCeee-ccccccCHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 027947 37 GADLNDPL-WSAKCLVSSPHLVRKVHLDYLDAGANIII-TASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYD 114 (216)
Q Consensus 37 g~~~~~~~-ws~~~ll~~pe~V~~iH~~Yl~AGadiI~-TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~ 114 (216)
|.|--+|. |-...--+.=+.-+++.++|++||-+.|- =.|..+..+ ..-++ -..+.+.+++|++-|-+.+.+
T Consensus 84 ggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d---~~~L~---d~~vAeRaa~L~~~aE~~~~~ 157 (420)
T TIGR02810 84 GGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFTKIHLDASMGCAGD---PAPLD---DATVAERAARLCAVAEAAATD 157 (420)
T ss_pred ecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCC---CccCC---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHhCCCCE-
Q 027947 115 RCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDA---------VSLETLKEFHRRRVLILANSGADL- 184 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~---------~s~ee~~~~h~~qi~~l~~~gvD~- 184 (216)
... ...++||.|.==|..-- . .+.+.++.+....-++|.+.|.+.
T Consensus 158 ~~~------------~~~~vYvIGTEvP~pGG-------------a~~~~~~~~vTs~e~~~~ti~~h~~af~~~GL~~a 212 (420)
T TIGR02810 158 RRG------------ETKPVYVIGTEVPVPGG-------------ALEALQTLAVTTPEAARATLRAHRKAFAARGLEDA 212 (420)
T ss_pred hcC------------CCCCeEEeccccCCCCc-------------hhhhccccCCCCHHHHHHHHHHHHHHHHHcCchhh
Q ss_pred ---EEE
Q 027947 185 ---IAF 187 (216)
Q Consensus 185 ---l~~ 187 (216)
+++
T Consensus 213 w~rvi~ 218 (420)
T TIGR02810 213 WPRVIA 218 (420)
T ss_pred hccceE
No 263
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.08 E-value=2.9e+02 Score=24.47 Aligned_cols=48 Identities=29% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----CCCHHHHHHHHHHHHHhC--Ccccc
Q 027947 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKVFSKYVIINQ--RKMLL 212 (216)
Q Consensus 161 ~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T-----~p~~~Ea~a~~~a~~~~~--~~~~~ 212 (216)
++++.+ ++.++.+++.|||.|++= | .-+.+|=+.+++.+.+.. +.||+
T Consensus 22 vD~~a~----~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvi 77 (299)
T COG0329 22 VDEEAL----RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVI 77 (299)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEE
Confidence 676554 455888999999977642 2 226788888888888763 56665
No 264
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=22.00 E-value=78 Score=32.08 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=29.6
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCC---eeecccccc
Q 027947 44 LWSAKCLVSSPHLVRKVHLDYLDAGAN---IIITASYQA 79 (216)
Q Consensus 44 ~ws~~~ll~~pe~V~~iH~~Yl~AGad---iI~TnTy~a 79 (216)
.|+++..-=+|+.|.+.-+++.+.|+. +|+---||.
T Consensus 219 TWdAfy~~Vt~egI~~gl~~L~~~Gip~~~vIIDDGWQs 257 (777)
T PLN02711 219 TWDAFYLTVHPQGVWEGVKGLVDGGCPPGLVLIDDGWQS 257 (777)
T ss_pred ehhHhcccCCHHHHHHHHHHHHhCCCCccEEEEcCCccc
Confidence 477776666899999999999999976 788777775
No 265
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.96 E-value=2.2e+02 Score=25.03 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 165 e~~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
.-.++-.+|++.|.+.|||.|-+-||....-+..+++.+.
T Consensus 237 ~gi~~a~~~~~~l~~~G~~giH~~t~n~~~~~~~il~~l~ 276 (281)
T TIGR00677 237 YGIELIVEMCQKLLASGIKGLHFYTLNLEKAALMILERLG 276 (281)
T ss_pred HHHHHHHHHHHHHHHCCCCeeEEeccCchHHHHHHHHHcC
Confidence 4566778899999999999999999998877777776543
No 266
>cd02439 DMB-PRT_CobT Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT. Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT/CobT, not to be confused with the CobT subunit of cobaltochelatase, which does not belong to this group) catalyzes the synthesis of alpha-ribazole-5'-phosphate, from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). This function is essential to the anaerobic biosynthesis pathway of cobalamin (vitamin B12), which is the largest and most complex cofactor in a number of enzyme-catalyzed reactions in bacteria, archaea and eukaryotes. Only eubacteria and archaebacteria can synthesize vitamin B12; multicellular organisms have lost this ability during evolution. DMB-PRT/CobT works sequentially with CobC (a phosphatase) to couple the lower ligand of cobalamin to a ribosyl moiety. DMB is the most common lower ligand of cobamides; other lower ligands include adenine, 5-methoxyben
Probab=21.95 E-value=1.6e+02 Score=26.37 Aligned_cols=37 Identities=38% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcc
Q 027947 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYG 144 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g 144 (216)
++.+++.+.++.+.+++++.++ .+.++++.|-+||-+
T Consensus 114 ms~~e~~~ai~~G~~~~~~~~~-------------------~g~dll~~GEmgiGn 150 (315)
T cd02439 114 MTREEAEAALEAGIELAREALD-------------------SGYDLLVIGEMGIGN 150 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-------------------cCCCEEEEcCccccc
Confidence 6778888999999999987664 356799999999976
No 267
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=21.92 E-value=1.9e+02 Score=26.36 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcc
Q 027947 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYG 144 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g 144 (216)
++.+++.+.++.+.+++++..+ .+.++++.|-+||-+
T Consensus 130 Mt~~e~~~ai~~G~~l~~~~~~-------------------~g~dll~~GEmGiGn 166 (335)
T PRK00105 130 MTREEAEAALAAGAALADEAAD-------------------AGTDLLGVGEMGIGN 166 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------------cCCCEEEEeCcCcch
Confidence 6667888999999999988764 245799999999976
No 268
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=21.35 E-value=2e+02 Score=25.05 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCC
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQR 208 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~ 208 (216)
|.+.+..++++|.+++. +....+.+...+++++++.+.
T Consensus 80 h~e~~~~aL~aGk~Vi~-~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 80 LRAIVEPVLAAGKKAIV-LSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred HHHHHHHHHHcCCcEEE-ecchhHHhHHHHHHHHHHcCC
Confidence 77788888889998876 566667788889999988763
No 269
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.30 E-value=7.3e+02 Score=23.76 Aligned_cols=111 Identities=19% Similarity=0.055 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccccccCHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027947 53 SPHLVRKVHLDYLDAGANIIITASYQATIQG-FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~-l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.++.|+..-+.-..+|.+.|....- .|... -...+.+.++..+....+++.|++. +
T Consensus 77 ~~~did~a~~a~~~~~~~~v~i~~~-~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~----------------------g 133 (513)
T PRK00915 77 VKKDIDAAAEALKPAEAPRIHTFIA-TSPIHMEYKLKMSREEVLEMAVEAVKYARSY----------------------T 133 (513)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEEEC-CcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC----------------------C
Confidence 4566766666656677775554332 22222 2345677666555566666665442 1
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-cC--CCHHHHHHHHHHHHHhC
Q 027947 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKVFSKYVIINQ 207 (216)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~E-T~--p~~~Ea~a~~~a~~~~~ 207 (216)
.. |. ++|- + .+ ..+. +|..+.++.+.++|+|.|.+- |+ -.+.+...+++.+++.-
T Consensus 134 ~~--v~--f~~e-----d----~~----r~d~----~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 134 DD--VE--FSAE-----D----AT----RTDL----DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred Ce--EE--EEeC-----C----CC----CCCH----HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhC
Confidence 22 22 2221 1 11 1244 445556777888999988654 43 36788888999888753
No 270
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.15 E-value=2e+02 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCEEEEe-cCCCHHHHHHHHHHHHHhCCccc
Q 027947 173 RVLILANSGADLIAFE-TIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 173 qi~~l~~~gvD~l~~E-T~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
|+....++|+|++++- +.-+..+++.+++.++..+..++
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~l 164 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVL 164 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEE
Confidence 6888888999999877 44356788889999888775543
No 271
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=21.15 E-value=1.7e+02 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHh
Q 027947 174 VLILANSGADLIAFETIPNKLEAKVFSKYVIIN 206 (216)
Q Consensus 174 i~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~ 206 (216)
++ +++.|+|.|++--+.+..+++.++++++..
T Consensus 78 l~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~ 109 (221)
T PF03328_consen 78 LE-ALDAGADGIVLPKVESAEDARQAVAALRYP 109 (221)
T ss_dssp HH-HHHTTSSEEEETT--SHHHHHHHHHHHSHT
T ss_pred hh-hcccCCCeeeccccCcHHHHHHHHHHHhhc
Confidence 44 788999999999999999999999998764
No 272
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=21.05 E-value=1.4e+02 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
+|+.+++.|+--+++-.+.+.++++.++.++|
T Consensus 81 ~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~r 112 (255)
T COG3836 81 MIKQLLDIGAQTLLIPMVDTAEQARQAVAATR 112 (255)
T ss_pred HHHHHHccccceeeeeccCCHHHHHHHHHhcc
Confidence 58889999999999999999999999999886
No 273
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=21.02 E-value=93 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCC
Q 027947 159 DAVSLETLKEFHRRRVLILANSGAD 183 (216)
Q Consensus 159 ~~~s~ee~~~~h~~qi~~l~~~gvD 183 (216)
+.+|.++.+++|..+--.|..+.|+
T Consensus 22 p~~spe~V~~~ya~~YPeL~tA~v~ 46 (65)
T PF14454_consen 22 PSLSPEEVRDFYAAQYPELTTAEVE 46 (65)
T ss_pred CCCCHHHHHHHHhhhChhhheeeec
Confidence 4689999999999998888887664
No 274
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=21.00 E-value=2.9e+02 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=28.2
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 027947 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET 189 (216)
Q Consensus 134 ~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~h~~qi~~l~~~gvD~l~~ET 189 (216)
++|.|.|+=.|. +..+.|++..+.+.+.++|.+++=.
T Consensus 358 i~VlGdM~ELG~-------------------~s~~~H~~v~~~~~~~~~d~v~~~G 394 (451)
T COG0770 358 IAVLGDMLELGE-------------------ESEELHEEVGEYAVEAGIDLVFLVG 394 (451)
T ss_pred EEEeCChhhhCc-------------------cHHHHHHHHHHHHHhcCceEEEEEc
Confidence 788887776553 2346799999999999999887644
No 275
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=20.93 E-value=1.6e+02 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 027947 162 SLETLKEFHRRRVLILANSGADLIAFETI 190 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD~l~~ET~ 190 (216)
..+|+..|-+...+.+...|-|+|.|||.
T Consensus 66 ~~~Ei~~f~~~L~~mf~~~~~~vvf~E~~ 94 (121)
T PF04677_consen 66 VWEEIRNFQKSLRKMFASQGKDVVFFERV 94 (121)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 46788888887788888889999999994
No 276
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.84 E-value=1.1e+02 Score=25.32 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHhcCCeeeccc
Q 027947 53 SPHLVRKVHLDYLDAGANIIITAS 76 (216)
Q Consensus 53 ~pe~V~~iH~~Yl~AGadiI~TnT 76 (216)
+++.+..+-+-=+++|||+|.|.|
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsT 152 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTST 152 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCC
Confidence 478899999999999999999997
No 277
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=20.81 E-value=1.4e+02 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhcCC----------eeeccccccCHHHHHh
Q 027947 54 PHLVRKVHLDYLDAGAN----------IIITASYQATIQGFEA 86 (216)
Q Consensus 54 pe~V~~iH~~Yl~AGad----------iI~TnTy~a~~~~l~~ 86 (216)
|.+|++.|++.++-+.+ -+.|-|+..++..+.+
T Consensus 192 ~~avr~~h~q~l~lA~~al~~~p~~eR~~S~lT~~i~~~~~~~ 234 (271)
T TIGR02147 192 PLAVRQYQKQMIDLAKEALDALPPSERDVSTVTFGISEEAYKE 234 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCccccccceeeEecCHHHHHH
Confidence 67899999999997755 4567788888776544
No 278
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=20.78 E-value=1.4e+02 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHhcCCeeeccc
Q 027947 51 VSSPHLVRKVHLDYLDAGANIIITAS 76 (216)
Q Consensus 51 l~~pe~V~~iH~~Yl~AGadiI~TnT 76 (216)
+..++.+.++=+.|.++|+..+..++
T Consensus 19 ~~~~~~~~~~a~a~~~~G~~~~~~~~ 44 (221)
T PRK01130 19 LHSPEIMAAMALAAVQGGAVGIRANG 44 (221)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEcCC
Confidence 67889999999999999999887653
No 279
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=20.70 E-value=3.8e+02 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCC
Q 027947 162 SLETLKEFHRRRVLILANSGAD 183 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~~gvD 183 (216)
..++...+++++++.+.+.|++
T Consensus 144 ~~~~~~~~~~~~i~~~~~~Gi~ 165 (257)
T cd00739 144 VVDEVLSFLEARLEAAESAGVA 165 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4678899999999999999983
No 280
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.52 E-value=2.8e+02 Score=23.51 Aligned_cols=40 Identities=15% Similarity=-0.043 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKML 211 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~ 211 (216)
...+++.+...+||.|++-.. +.......++.+++.+ .|+
T Consensus 45 q~~~i~~l~~~~vdgiIi~~~-~~~~~~~~l~~~~~~g-iPv 84 (302)
T TIGR02637 45 QIEVVNSLIAQKVDAIAISAN-DPDALVPALKKAMKRG-IKV 84 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCC-ChHHHHHHHHHHHHCC-CEE
Confidence 345688888899999999654 3344445555565543 454
No 281
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=20.38 E-value=6.2e+02 Score=22.59 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCeeeccccccCHHHH
Q 027947 55 HLVRKVHLDYLDAGANIIITASYQATIQGF 84 (216)
Q Consensus 55 e~V~~iH~~Yl~AGadiI~TnTy~a~~~~l 84 (216)
+...+.|....+-|+.+|+|-....++...
T Consensus 36 ~~~~~yy~~rA~GG~Glii~~~~~v~~~~~ 65 (341)
T PF00724_consen 36 DRLIAYYERRAKGGAGLIITEATAVSPEGR 65 (341)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEESSGGGS
T ss_pred HHHHHHHHHHhhcCCceEEecccccccccc
Confidence 377888888888899988776666776643
No 282
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=20.36 E-value=1.9e+02 Score=26.29 Aligned_cols=37 Identities=35% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcc
Q 027947 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYG 144 (216)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g 144 (216)
++.+++.+.++.+.+++++..+ .+.++++.|-+||-+
T Consensus 130 Mt~~e~~~a~~~G~~~~~~~~~-------------------~g~dll~~GEmGiGn 166 (333)
T TIGR03160 130 MTREEAEAALEAGIEAADEAAD-------------------SGADLLGTGEMGIGN 166 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------------cCCCEEEEeCcCchh
Confidence 6667888999999999988764 245799999999966
No 283
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=20.34 E-value=1.7e+02 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.7
Q ss_pred CCHHHHHH-----HHHHHHHHHHhCCCCEEE
Q 027947 161 VSLETLKE-----FHRRRVLILANSGADLIA 186 (216)
Q Consensus 161 ~s~ee~~~-----~h~~qi~~l~~~gvD~l~ 186 (216)
+|.+|+.+ ....|+++|...|+.++.
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEE
Confidence 45666665 467899999999987765
No 284
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.27 E-value=2.5e+02 Score=24.27 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCEEEEec---CCCHHHHHHHHHHHHHhCCcccc
Q 027947 173 RVLILANSGADLIAFET---IPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET---~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
.++.+..+|.|++++.+ .-+..++..++.+++..+-.|++
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~V 67 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVV 67 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 36677778999999984 45788888888888877755553
No 285
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.23 E-value=1.6e+02 Score=24.07 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccc
Q 027947 170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~ 212 (216)
..++++.++..|+|.|++.+... .++...++-+++.+ .||+
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~-~~~~~~l~~~~~~g-Ipvv 84 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDP-DSLAPFLEKAKAAG-IPVV 84 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSST-TTTHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHhcCCEEEecCCCH-HHHHHHHHHHhhcC-ceEE
Confidence 44668888889999999887665 34456666676654 4554
No 286
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=20.13 E-value=2.8e+02 Score=24.80 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCEEEEec-CCCHHHHHHHHHHHHHhCC-cccc
Q 027947 170 HRRRVLILANSGADLIAFET-IPNKLEAKVFSKYVIINQR-KMLL 212 (216)
Q Consensus 170 h~~qi~~l~~~gvD~l~~ET-~p~~~Ea~a~~~a~~~~~~-~~~~ 212 (216)
..++++.++++|+|+|.+-+ ..+.......++.+++... .|+.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi 139 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVI 139 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEE
Confidence 35678899999999998865 3344566667777777652 4443
No 287
>PRK07475 hypothetical protein; Provisional
Probab=20.12 E-value=3.6e+02 Score=23.05 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccc
Q 027947 162 SLETLKEFHRRRVLILAN--SGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKK 214 (216)
Q Consensus 162 s~ee~~~~h~~qi~~l~~--~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~ 214 (216)
+.++..+...+.++.|.+ .++|.|++|. .++. .+...+++...+||+-+
T Consensus 175 d~~~~~~~l~~~~~~l~~~~~~~daIvL~C-TeLp---~~~~~le~~~glPViDs 225 (245)
T PRK07475 175 DNEAAEQEVVAAARALLERHPDIGAIVLEC-TNMP---PYAAAIQRATGLPVFDI 225 (245)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCEEEEcC-cChH---HHHHHHHHhcCCCEEeH
Confidence 344445556666777763 4899999994 4443 34456665556788743
No 288
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.01 E-value=1.6e+02 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCEEEEecCCCHHHHHHHHHHHH
Q 027947 173 RVLILANSGADLIAFETIPNKLEAKVFSKYVI 204 (216)
Q Consensus 173 qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~ 204 (216)
|+....+.|+|.|.+..|. ..+++.+++.++
T Consensus 190 ea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~ 220 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMK-PEEIKEAVQLLK 220 (265)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhc
Confidence 4444567899999999986 577887777654
Done!