BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027948
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
pdb|1X1O|B Chain B, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
pdb|1X1O|C Chain C, Crystal Structure Of Project Id Tt0268 From Thermus
Thermophilus Hb8
Length = 286
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L ED G +GD+T + +P D+E EA LAKE G++AG+ +AE +F DP + +
Sbjct: 22 LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
G V +G + +V G I+ ER+ LN +QR+SGIATLTR +V
Sbjct: 81 GARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYV 125
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
pdb|3GNN|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Burkholderi Pseudomallei
Length = 298
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 109 ALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
ALAED G GD T +P A + +ED ++ G+ + + VDPS++V+W +
Sbjct: 36 ALAEDVGS-GDQTGR-LVPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHR 93
Query: 169 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+GD + ++ G A +++ AER LNF+Q +SG+A+ TR +V
Sbjct: 94 EGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYV 139
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE 164
++ AL ED GD+GD+T +I ++ +V +E+ ++ GI + E +F+ +K E
Sbjct: 29 IIHNALKEDLGDKGDIT-TNSILINEKVNFAINTRENLVVCGIPILEEVFNMNKEHVKYE 87
Query: 165 WSLKDGDHVHKGLQFGKVSGRAHSIVI--AERVVLNFMQRMSGIATLTRVFV 214
KDGD K VSG A +I + ERV+LNF+Q SGIA++TR FV
Sbjct: 88 IHKKDGDITGKNSTL--VSGEALAIYLLPIERVILNFIQHASGIASITRQFV 137
>pdb|3TQV|A Chain A, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase
From Francisella Tularensis.
pdb|3TQV|B Chain B, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase
From Francisella Tularensis
Length = 287
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE 164
+V+ +LAED GD+T A + D++ A + +E+ I+ G A + +++D ++++
Sbjct: 22 LVRESLAEDIA-TGDIT--AQLAEDIDTTAFCITREEXILCGQDFANEVINQLDKNIQIT 78
Query: 165 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
W D V + ++ G SI+ AER +LNF+Q +SG AT+T V
Sbjct: 79 WLYSDAQKVPANARIFELKGNVRSILTAERTILNFIQXLSGTATVTNKLV 128
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
pdb|1QAP|B Chain B, Quinolinic Acid Phosphoribosyltransferase With Bound
Quinolinic Acid
Length = 296
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 101 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F ++
Sbjct: 21 DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQL 80
Query: 158 -DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+++ W + DGD +H ++ G A ++ ER LNF+Q +SG+A+ R +V
Sbjct: 81 AGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYV 138
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3PAJ|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 320
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 93 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEM 152
+LP+ T + +K L D+T + IP D A + +E G+ G A+
Sbjct: 41 QLPADITRSVIDTLKEDLGGTLDPAADITA-SLIPADRISTATIITREAGVFCGQLWADE 99
Query: 153 IFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRV 212
+F ++ + +EW ++DGD + ++G A ++ ER +NF+Q +SG AT T
Sbjct: 100 VFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNAMNFIQTLSGCATATAR 159
Query: 213 FV 214
+V
Sbjct: 160 YV 161
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRA 186
EA+ K+DG++ G+ A+ +F++ + L+VEW K+G + + K++G A
Sbjct: 42 EANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPA 99
Query: 187 HSIVIAERVVLNFMQRMSGIATLTRVFV 214
+I++AER LN + R SGIAT + +
Sbjct: 100 KNILLAERTALNILSRSSGIATASHKII 127
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRA 186
EA+ K+DG++ G+ A+ +F++ + L+VEW K+G + + K++G A
Sbjct: 41 EANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPA 98
Query: 187 HSIVIAERVVLNFMQRMSGIATLTRVFV 214
+I++AER LN + R SGIAT + +
Sbjct: 99 KNILLAERTALNILSRSSGIATASHKII 126
>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (qaprtase)
Apo-enzyme From Mycobacterium Tuberculosis
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
Length = 284
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 176
DVT +AT+P A + +E G++AG+ +A + +EV +V ++DG V G
Sbjct: 27 DVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 86
Query: 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+ + ++ AER +LN + +SGIAT T +V
Sbjct: 87 EALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWV 124
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
pdb|1O4U|B Chain B, Crystal Structure Of A Nicotinate Nucleotide
Pyrophosphorylase (Tm1645) From Thermotoga Maritima At
2.50 A Resolution
Length = 285
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 123 MATIPL-DMEVEAHFLAKEDGIIA-GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180
+A+ PL + AH L K + ++A GI ++ M ++ L +++++DG+++ G
Sbjct: 33 LASFPLRNTTAGAHLLLKTENVVASGIEVSRMFLEKM--GLLSKFNVEDGEYLEGTGVIG 90
Query: 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVF 213
++ G + +++AER +LN + M +AT TR F
Sbjct: 91 EIEGNTYKLLVAERTLLNVLSVMFSVATTTRRF 123
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +++ +V W L +G + + +V G AH +++
Sbjct: 43 QAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLG 100
Query: 193 ERVVLNFMQRMSGI 206
ERV LN + R SGI
Sbjct: 101 ERVALNTLARCSGI 114
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +++ +V W L +G + + +V G AH +++
Sbjct: 45 QAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLG 102
Query: 193 ERVVLNFMQRMSGI 206
ERV LN + R SGI
Sbjct: 103 ERVALNTLARCSGI 116
>pdb|2B7N|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7N|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7P|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|A Chain A, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|B Chain B, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
pdb|2B7Q|C Chain C, Crystal Structure Of Quinolinic Acid
Phosphoribosyltransferase From Helicobacter Pylori
Length = 273
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG----IALAEMIFHE 156
+++ ++ AL ED G GD+ + D + A AK++G+ +G + L EM E
Sbjct: 2 EIRTFLERALKEDLG-HGDL-FERVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGIE 59
Query: 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
++K + K D ++ G ++ ER +LN +Q SGIATLT FV
Sbjct: 60 CVQTIKDKERFKPKD------ALMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFV 111
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 100 YDLKGVVKLALAEDAGDR----GDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
YD KG V+++ A +A D G V C+ +PL EV A DG A LA+ +
Sbjct: 183 YDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNV 242
Query: 154 FHE 156
H
Sbjct: 243 HHN 245
>pdb|1E6Y|C Chain C, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|F Chain F, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 247
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 21/170 (12%)
Query: 47 ASERALMPGILSISTLVWPHLCTNSRQVVKMSAT------GIRKPGFESPAIKLP----S 96
A ER PG S++ H+ ++ ++S G R PG + P+ P
Sbjct: 1 AYERQYYPGATSVAANRRKHMSGKLEKLREISDEDLTAVLGHRAPGSDYPSTHPPLAEMG 60
Query: 97 HPTYDLKGVVKLALAEDAGDRGD----VTCMATIPLDMEVEAHFLA-----KEDGIIAGI 147
P + V AGDR M P ++F A + G ++G
Sbjct: 61 EPAXSTRENVAATPGAAAGDRVRYIQFADSMYNAPATPYFRSYFAAINFRGVDPGTLSGR 120
Query: 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVL 197
+ E +++ KV+ + DH G++ V G HS+ + E V+
Sbjct: 121 QIVEARERDMEQCAKVQMETEITDHALAGVRGATVHG--HSVRLQEDGVM 168
>pdb|1TD9|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1XCO|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
Length = 329
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 173 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
V+KGL G VSG AHS R L ++ G+ + VF+
Sbjct: 119 VYKGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFI 160
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 100 YDLKGVVKLALAEDA----GDRGDVTCM--ATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
YD KG V++A A++A G G V C+ +PL EV A +G A LA+
Sbjct: 183 YDGKGQVRVATAQEARDAYGSLGGVPCVLEKRLPLKYEVSALIARGANGASAVFPLAQNT 242
Query: 154 FH 155
H
Sbjct: 243 HH 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,248,868
Number of Sequences: 62578
Number of extensions: 240009
Number of successful extensions: 713
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 19
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)