BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027948
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P77938|NADC_RHORU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1
Length = 296
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 95 PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
P+HP + + V+ ALAED G GD+T ATIP A F+A++ GI+AG+
Sbjct: 3 PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGC 62
Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATL 209
A F +D ++ L+DG + G +V+G A +I+ AER LNF+ +SGIAT
Sbjct: 63 ARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTILAAERTALNFLGHLSGIATR 122
Query: 210 TRVF 213
TR F
Sbjct: 123 TRRF 126
>sp|P30819|NADC_PSEAE Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=nadC PE=3 SV=2
Length = 282
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 94 LPSHPTYDLKGV----VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
+P+ DL+G V+ ALAED G GD+T P E EA + +E IAG A
Sbjct: 1 MPNLTLADLQGEIQANVRTALAEDVGG-GDLTAQLIDP-QREAEARVITREHATIAGRAW 58
Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATL 209
+ +F +VDP + V W ++DG V ++ G A +++ ER LNF+Q +SG AT
Sbjct: 59 VDEVFRQVDPRVLVTWQVEDGQRVEPNQMLFQLKGPARALLTGERSALNFLQLLSGTATR 118
Query: 210 TRVF 213
++ +
Sbjct: 119 SQHY 122
>sp|P74301|NADC_SYNY3 Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=nadC
PE=3 SV=1
Length = 295
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
LAED G RGD + + L +A ++AKE+G+IAG+ +A IF +DPS++ + +
Sbjct: 29 LAEDIG-RGDWSTQG-LGLQHRGQARWVAKENGVIAGLPMAARIFQLLDPSMEFQVLAGE 86
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
G V ++G S++ ERV LN + +SGIAT+TR +V
Sbjct: 87 GQAVTASTVVATMAGNLGSLLTGERVALNLVMGLSGIATMTRQYV 131
>sp|P39666|NADC_BACSU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Bacillus subtilis (strain 168) GN=nadC PE=1 SV=2
Length = 289
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
LK ++ ED G GD+T +I + EA +AK +GI AG A+ + F +D ++
Sbjct: 6 LKKLLNHFFLEDIG-TGDLTSQ-SIFGEQSCEAEIVAKSEGIFAGAAIIKEGFSLLDENV 63
Query: 162 KVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR 211
+ KDGD +HKG ++ G A +++ ERVVLN +QR+SGIAT+TR
Sbjct: 64 QSILHKKDGDMLHKGEVIAELHGPAAALLSGERVVLNLIQRLSGIATMTR 113
>sp|O27860|NADC_METTH Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=nadC PE=3 SV=1
Length = 279
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQ 178
D+T A I V A +++E+G++AG+ +AEM+ E S+ + W DGD + G +
Sbjct: 17 DITTEALIDRGTRVVADIVSREEGVVAGVEVAEMMAREFSISI-IRWK-DDGDPLSGGER 74
Query: 179 FGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR 211
+ G A I++ ER +LN M +MSGIATLTR
Sbjct: 75 VLTLEGDAMDILMVERTMLNLMMKMSGIATLTR 107
>sp|P30012|NADC_SALTY Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=nadC PE=1 SV=3
Length = 297
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 101 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQL 81
Query: 158 -DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+++ W + DGD +H +++G A ++ ER LNF+Q +SG+A+ R +V
Sbjct: 82 AGDDVRLTWHVDDGDAIHANQTVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYV 139
>sp|A7SG73|NADC_NEMVE Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment)
OS=Nematostella vectensis GN=qprt PE=3 SV=1
Length = 289
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A L K DG++AG+ IF ++D KVEW +GD + G V+G + I++
Sbjct: 47 KAVLLCKSDGVLAGVPFFNAIFEKLD--CKVEWQNNEGDPIKAVSVIGTVTGPVNKILLG 104
Query: 193 ERVVLNFMQRMSGIATLTR 211
ERV LN + R SGIAT +R
Sbjct: 105 ERVALNCISRASGIATKSR 123
>sp|P46714|NADC_MYCLE Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Mycobacterium leprae (strain TN) GN=nadC PE=3 SV=1
Length = 284
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 103 KGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPS 160
+ ++ AL ED D+T AT+P V + +E G+IAG+ +A ++ EV
Sbjct: 11 RDTIRRALHEDLRYGLDITTQATVPAGTVVTGSMVPREPGVIAGVDVALLVLDEVFGVDG 70
Query: 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+V + ++DG + G V A ++ AER +LN + MSGIAT+T +V
Sbjct: 71 YRVLYRVEDGARLQSGQPLLTVQAAARGLLTAERTMLNLVCHMSGIATVTVAWV 124
>sp|P43619|NADC_YEAST Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=BNA6 PE=1 SV=1
Length = 295
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRA 186
EA+ K+DG++ G+ A+ +F++ + L+VEW K+G + + K++G A
Sbjct: 42 EANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPA 99
Query: 187 HSIVIAERVVLNFMQRMSGIATLTRVFV 214
+I++AER LN + R SGIAT + +
Sbjct: 100 KNILLAERTALNILSRSSGIATASHKII 127
>sp|O28439|NADC_ARCFU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=nadC PE=3 SV=1
Length = 258
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 118 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177
GDVT + T +VEA ++K +G++AG+ + +++F + + V S KDG+ + G
Sbjct: 4 GDVTAIPT----KDVEAVIVSKGEGVLAGVGVVKILFDLAE--IVVMESKKDGEPIKPGD 57
Query: 178 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
++ G++ SI+ ER+ +N + RMSGIAT T
Sbjct: 58 VVMRLRGKSDSILATERLAINILMRMSGIATAT 90
>sp|O06594|NADC_MYCTU Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Mycobacterium tuberculosis GN=nadC PE=1 SV=1
Length = 285
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 119 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 176
DVT +AT+P A + +E G++AG+ +A + +EV +V ++DG V G
Sbjct: 28 DVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 87
Query: 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+ + ++ AER +LN + +SGIAT T +V
Sbjct: 88 EALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWV 125
>sp|P30011|NADC_ECOLI Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Escherichia coli (strain K12) GN=nadC PE=3 SV=7
Length = 297
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 101 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ G V AL ED G D + +P + A + +E+G+ G E +F ++
Sbjct: 22 DIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQL 81
Query: 158 -DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+ + W + DGD ++ ++ G + ++ ER LNF+Q +SG+A+ R +V
Sbjct: 82 AGDDVTIIWHVDDGDVINANQSLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYV 139
>sp|Q3T063|NADC_BOVIN Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Bos
taurus GN=QPRT PE=2 SV=1
Length = 299
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +V+ +V W L +G + + +V G AH +++
Sbjct: 43 QAVLWAKSPGVLAGRPFLDAIFAQVN--CQVSWFLPEGSKLVPVAKVAEVRGPAHCLLLG 100
Query: 193 ERVVLNFMQRMSGIATLTRVFV 214
ERV LN + R SG+A++ V
Sbjct: 101 ERVALNTLARCSGVASMAAAAV 122
>sp|Q57916|NADC_METJA Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nadC PE=3
SV=1
Length = 283
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDP 159
Y LK ++K +L D G GD+T + IP ++ + AKE I+ GI F E
Sbjct: 5 YALK-ILKKSLEYDVG-FGDITTNSIIPEGVKAKGVIKAKEKCIVCGIDFIVAFFEEY-- 60
Query: 160 SLKVEWSLKDGDHVHKG-LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
+K + DG+ + L+F G A +I++ ER LN + +SGIAT+T V
Sbjct: 61 GIKCKKLFNDGEEAYGNILEF---EGDARTILMLERTALNLLMHLSGIATMTNRIV 113
>sp|Q91X91|NADC_MOUSE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Mus
musculus GN=Qprt PE=2 SV=1
Length = 299
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +++ +V W L +G + ++ +V G AH +++
Sbjct: 43 QAVLWAKSPGVLAGRPFFDAIFTQLN--CQVSWFLPEGSKLVPVVKVAEVKGPAHHLLLG 100
Query: 193 ERVVLNFMQRMSGIAT 208
ERV LN + R SGIA+
Sbjct: 101 ERVALNTLARCSGIAS 116
>sp|Q15274|NADC_HUMAN Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Homo
sapiens GN=QPRT PE=1 SV=3
Length = 297
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +++ +V W L +G + + +V G AH +++
Sbjct: 43 QAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLG 100
Query: 193 ERVVLNFMQRMSGI 206
ERV LN + R SGI
Sbjct: 101 ERVALNTLARCSGI 114
>sp|Q5I0M2|NADC_RAT Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rattus
norvegicus GN=Qprt PE=2 SV=1
Length = 299
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+A AK G++AG + IF +++ +V W L +G + ++ +V G AH +++
Sbjct: 43 QAVLWAKSPGVLAGRPFFDAIFTQLN--CQVSWLLPEGSKLVPVVKVAEVRGPAHHLLLG 100
Query: 193 ERVVLNFMQRMSGI 206
ERV LN + R SGI
Sbjct: 101 ERVALNTLARCSGI 114
>sp|Q75JX0|NADC_DICDI Nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Dictyostelium discoideum GN=qprt PE=3 SV=1
Length = 300
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
P + ++ ++K L ED C+ + D +V AH L K++G+ +G + IF+++
Sbjct: 8 PKFKIEKIIKEWLEEDIPSFDYGGCV--VGSDEKV-AHLLGKQNGVFSGSIFFQEIFNQL 64
Query: 158 DPSLKVEWSLKDGD--------HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIAT 208
KV W +KDG+ +K V G +I+I ER+ LN + R GI T
Sbjct: 65 --GCKVIWFIKDGESFSMTHGPEKNKPQVLAHVIGPVRNILIGERLSLNILSRSCGITT 121
>sp|Q9ZJN2|NADC_HELPJ Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Helicobacter pylori (strain J99) GN=nadC PE=3 SV=1
Length = 273
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPS 160
++K ++ AL ED G GD+ + D + A AK++G+ +G A +
Sbjct: 2 EIKTFLECALKEDLG-HGDL-FERVLEKDFKATAFVRAKQEGVFSGEKYALELLQMT--G 57
Query: 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
++ ++KD + ++ G ++ ER +LN +Q SGIATLT FV
Sbjct: 58 IECVQNIKDKERFKPKDTLMEIRGDFSMLLKIERTLLNLLQHSSGIATLTSRFV 111
>sp|O25909|NADC_HELPY Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=nadC PE=1 SV=1
Length = 273
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG----IALAEMIFHE 156
+++ ++ AL ED G GD+ + D + A AK++G+ +G + L EM E
Sbjct: 2 EIRTFLERALKEDLG-HGDL-FERVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGIE 59
Query: 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
++K + K D ++ G ++ ER +LN +Q SGIATLT FV
Sbjct: 60 CVQTIKDKERFKPKD------ALMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFV 111
>sp|Q9CLU4|MODD_PASMU Putative pyrophosphorylase ModD OS=Pasteurella multocida (strain
Pm70) GN=modD PE=3 SV=1
Length = 282
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 117 RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176
RGD+T A + E F K GI+AGI++AE + ++D +V +K+G+ V G
Sbjct: 19 RGDLTTHALGLESIPAEICFKRKNAGIVAGISIAEKLLRKLDIHPQV--YVKEGEFVEAG 76
Query: 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
G A + A +VV ++ G+A T
Sbjct: 77 SLLLSAKGSADKLHQAWKVVQLVLEWSCGVAQYT 110
>sp|Q57278|MODD_HAEIN Putative pyrophosphorylase ModD OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=modD PE=3 SV=1
Length = 281
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 117 RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVD--PSLKVEWSLKDGDHVH 174
RGD+T A ++ + F K G++AG+++AE + ++D P L V K+G+ V
Sbjct: 19 RGDLTTHALSIENIPAKILFKRKNAGVVAGVSVAEKLLKKLDIQPHLYV----KEGEWVE 74
Query: 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
G G + + A +VV ++ G+A T
Sbjct: 75 SGALLISAEGMSEQLHQAWKVVQLVLEWSCGVAQYT 110
>sp|Q0BV22|MRAY_GRABC Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=mraY
PE=3 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 16 FPLFPGLLIW-QSSHSCGQVIIEALLSAHLIGASERALMPGIL-----SISTLVWPHLCT 69
F L P L+ W +S GQ I E HL+ M G+L ISTL+W L
Sbjct: 38 FLLGPALIRWLKSVQRGGQPIREDGPERHLLEKKGTPTMGGVLILAATGISTLLWTDLRN 97
Query: 70 NSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKL 108
V + G GF +KL T L G VKL
Sbjct: 98 GYVWAVLLLTLGYGGIGFADDYLKLSKRNTKGLPGRVKL 136
>sp|Q8D6Q0|ALR2_VIBVU Alanine racemase 2 OS=Vibrio vulnificus (strain CMCP6) GN=alr2 PE=3
SV=1
Length = 408
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 34/165 (20%)
Query: 28 SHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGF 87
SH Q I A++ A G R LMP IL P + S K+ +R+ GF
Sbjct: 62 SHIAPQTKICAVMKADAYGNGIRGLMPTILEQQI---PCVAIASNAEAKL----VRESGF 114
Query: 88 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGI 147
E I++ S T +++ + L + E G E +A LA
Sbjct: 115 EGELIRVRSASTSEIEQALSLDIEELIGS--------------EQQARELA--------- 151
Query: 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192
+LAE + ++KV +L DG G+ G ++ IA
Sbjct: 152 SLAE----KYSKTIKVHLALNDGGMGRNGIDMSTERGPKEAVAIA 192
>sp|A8MH14|AROC_ALKOO Chorismate synthase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=aroC PE=3 SV=1
Length = 384
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 97 HPTYDLKGVVKLALAEDAGDR-GDV--TCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
+PT + + + ++ A++ GD G V + +P+ + AHF K DGI+A ++
Sbjct: 189 NPTIEERMMGEIQRAKETGDSLGGVFEVIVRNVPIGIGSYAHFDRKLDGILAQGLMSLQA 248
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAH 187
V+ +E S K G H +++ + G H
Sbjct: 249 IKAVEIGNGIEGSSKMGSQFHDEIKYSEAKGYYH 282
>sp|O13986|YEG4_SCHPO Uncharacterized protein C26H5.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.04 PE=4 SV=3
Length = 789
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 52 LMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLAL 110
L+ GI ++WP CT+ Q K A+ ++ GF L +H + D++ VK AL
Sbjct: 724 LLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRERVKDAL 782
>sp|Q6GKS8|PURA_STAAR Adenylosuccinate synthetase OS=Staphylococcus aureus (strain
MRSA252) GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|P99099|PURA_STAAN Adenylosuccinate synthetase OS=Staphylococcus aureus (strain N315)
GN=purA PE=1 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|P65884|PURA_STAAM Adenylosuccinate synthetase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=purA PE=1 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|Q8CQK1|PURA_STAES Adenylosuccinate synthetase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|Q8NYX6|PURA_STAAW Adenylosuccinate synthetase OS=Staphylococcus aureus (strain MW2)
GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|Q6GD73|PURA_STAAS Adenylosuccinate synthetase OS=Staphylococcus aureus (strain
MSSA476) GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|Q5HJX8|PURA_STAAC Adenylosuccinate synthetase OS=Staphylococcus aureus (strain COL)
GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|Q5HK16|PURA_STAEQ Adenylosuccinate synthetase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 168 KDGDHVHK-GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLT 210
+DG H+ + G ++G +GR + + VVL +R+SGI L+
Sbjct: 284 EDGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLS 327
>sp|P39646|PTAS_BACSU Phosphate acetyltransferase OS=Bacillus subtilis (strain 168)
GN=pta PE=1 SV=3
Length = 323
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 173 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
V+KGL G VSG AHS R L ++ G+ + VF+
Sbjct: 113 VYKGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFI 154
>sp|A5FUK7|MRAY_ACICJ Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Acidiphilium
cryptum (strain JF-5) GN=mraY PE=3 SV=1
Length = 362
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 16 FPLFPGLLIW-QSSHSCGQVIIEALLSAHLIGASERALMPGIL-----SISTLVWPHLCT 69
F L P L+ W +S GQ I HLI M G L ++STL+W L
Sbjct: 38 FLLGPRLIRWLKSLQKQGQPIRADGPERHLIEKKGTPTMGGFLILIALTVSTLLWADLRN 97
Query: 70 NSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIP 127
V M G GF +KL T + G +KL + G V +P
Sbjct: 98 GYVWAVLMITIGYGALGFADDFLKLTKRNTKGVPGRIKLVVQAVLGLGAAVWITQLMP 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,141,433
Number of Sequences: 539616
Number of extensions: 3079081
Number of successful extensions: 10583
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10551
Number of HSP's gapped (non-prelim): 38
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)