Query 027948
Match_columns 216
No_of_seqs 149 out of 1102
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02716 nicotinate-nucleotide 100.0 1.8E-34 4E-39 261.7 17.0 127 89-215 6-132 (308)
2 PRK06106 nicotinate-nucleotide 100.0 2.7E-34 5.9E-39 257.6 16.7 119 97-215 6-124 (281)
3 COG0157 NadC Nicotinate-nucleo 100.0 2.1E-34 4.5E-39 258.2 15.1 117 98-215 2-118 (280)
4 PRK07428 nicotinate-nucleotide 100.0 5.2E-34 1.1E-38 256.3 16.4 124 88-215 2-126 (288)
5 PRK06543 nicotinate-nucleotide 100.0 1.8E-33 4E-38 252.4 16.0 114 101-215 6-119 (281)
6 PRK06978 nicotinate-nucleotide 100.0 2.4E-33 5.1E-38 253.1 15.8 113 101-215 24-136 (294)
7 PRK06559 nicotinate-nucleotide 100.0 3.4E-33 7.5E-38 251.6 16.4 118 97-215 8-127 (290)
8 PRK08072 nicotinate-nucleotide 100.0 5.3E-33 1.1E-37 248.4 15.7 114 101-215 5-118 (277)
9 PRK06096 molybdenum transport 100.0 5.5E-33 1.2E-37 249.5 15.3 111 102-215 5-115 (284)
10 TIGR01334 modD putative molybd 100.0 5.5E-33 1.2E-37 248.6 15.3 111 102-215 4-114 (277)
11 PRK05742 nicotinate-nucleotide 100.0 1.2E-32 2.5E-37 246.3 15.8 115 99-215 6-120 (277)
12 PRK07896 nicotinate-nucleotide 100.0 2.9E-32 6.4E-37 245.3 16.6 121 94-215 7-130 (289)
13 cd01572 QPRTase Quinolinate ph 100.0 2.6E-32 5.5E-37 242.2 15.4 111 104-215 2-112 (268)
14 PRK09016 quinolinate phosphori 100.0 4.9E-32 1.1E-36 244.7 15.9 115 100-215 21-139 (296)
15 cd01573 modD_like ModD; Quinol 100.0 3.8E-32 8.2E-37 241.5 14.7 109 104-215 2-110 (272)
16 PRK08385 nicotinate-nucleotide 100.0 8.9E-32 1.9E-36 240.9 15.2 109 104-215 4-112 (278)
17 TIGR00078 nadC nicotinate-nucl 100.0 9.6E-32 2.1E-36 238.3 14.3 108 105-215 1-108 (265)
18 PRK05848 nicotinate-nucleotide 100.0 1.5E-31 3.3E-36 238.7 15.4 111 101-215 2-112 (273)
19 cd01568 QPRTase_NadC Quinolina 100.0 1.5E-31 3.3E-36 236.7 14.8 110 104-215 2-111 (269)
20 PF02749 QRPTase_N: Quinolinat 100.0 8.8E-29 1.9E-33 186.2 9.9 88 114-204 1-88 (88)
21 KOG3008 Quinolinate phosphorib 99.9 4.3E-28 9.4E-33 214.3 7.1 121 87-214 4-124 (300)
22 PRK08662 nicotinate phosphorib 99.9 7.3E-24 1.6E-28 194.3 11.5 107 103-215 9-123 (343)
23 cd01571 NAPRTase_B Nicotinate 99.8 1.2E-20 2.5E-25 170.1 8.0 95 118-215 8-106 (302)
24 cd00516 PRTase_typeII Phosphor 99.8 1.8E-19 3.9E-24 157.7 12.3 97 119-215 1-104 (281)
25 PRK07188 nicotinate phosphorib 99.8 1.5E-18 3.2E-23 160.2 12.7 87 129-215 36-125 (352)
26 PRK09243 nicotinate phosphorib 98.7 7.6E-08 1.7E-12 92.1 9.1 104 108-215 9-149 (464)
27 cd01570 NAPRTase_A Nicotinate 98.7 9.8E-08 2.1E-12 87.4 9.4 85 129-214 22-139 (327)
28 cd01567 NAPRTase_PncB Nicotina 98.2 1.1E-05 2.4E-10 73.6 9.9 85 129-214 21-138 (343)
29 PRK12484 nicotinate phosphorib 97.7 0.00018 3.9E-09 68.9 9.5 83 131-214 27-142 (443)
30 TIGR01513 NAPRTase_put putativ 97.7 0.00021 4.5E-09 68.6 9.2 84 130-214 23-139 (443)
31 COG1488 PncB Nicotinic acid ph 97.4 0.0007 1.5E-08 64.3 8.2 112 101-215 6-151 (405)
32 PRK09198 putative nicotinate p 96.9 0.0035 7.5E-08 60.8 8.1 67 148-215 83-155 (463)
33 cd01569 PBEF_like pre-B-cell c 96.6 0.0052 1.1E-07 58.8 6.9 67 148-215 81-153 (407)
34 PHA02594 nadV nicotinamide pho 96.4 0.006 1.3E-07 59.3 5.6 54 161-215 101-158 (470)
35 PLN02885 nicotinate phosphorib 95.9 0.042 9E-07 54.4 8.9 62 152-214 91-153 (545)
36 PF13533 Biotin_lipoyl_2: Biot 93.7 0.069 1.5E-06 36.4 2.8 26 163-188 14-39 (50)
37 PF00364 Biotin_lipoyl: Biotin 90.4 0.27 5.9E-06 35.6 2.8 23 163-185 18-40 (74)
38 PF07831 PYNP_C: Pyrimidine nu 90.0 0.82 1.8E-05 33.9 5.1 38 157-194 28-66 (75)
39 PRK05889 putative acetyl-CoA c 89.8 0.43 9.2E-06 34.1 3.4 26 161-186 12-37 (71)
40 PRK06748 hypothetical protein; 89.5 0.45 9.7E-06 36.4 3.4 24 161-184 14-37 (83)
41 cd01401 PncB_like Nicotinate p 85.0 2.1 4.6E-05 40.8 5.9 48 168-215 88-154 (377)
42 PRK05321 nicotinate phosphorib 84.9 3.8 8.2E-05 39.4 7.6 38 176-213 106-158 (400)
43 PRK08225 acetyl-CoA carboxylas 84.6 1.3 2.8E-05 31.3 3.4 24 162-185 12-35 (70)
44 PRK14875 acetoin dehydrogenase 84.5 1.1 2.4E-05 39.3 3.6 25 161-185 18-42 (371)
45 cd06850 biotinyl_domain The bi 83.2 1.5 3.3E-05 29.3 3.1 23 162-184 9-32 (67)
46 COG0508 AceF Pyruvate/2-oxoglu 82.8 1.2 2.6E-05 42.5 3.3 24 162-185 19-42 (404)
47 PRK05820 deoA thymidine phosph 82.7 13 0.00028 36.3 10.3 60 130-189 337-409 (440)
48 PF10011 DUF2254: Predicted me 82.7 11 0.00025 35.2 9.7 48 134-183 196-245 (371)
49 PRK06078 pyrimidine-nucleoside 82.0 14 0.0003 36.0 10.2 68 129-196 331-411 (434)
50 TIGR02644 Y_phosphoryl pyrimid 81.9 8.9 0.00019 37.0 8.8 59 130-188 330-401 (405)
51 TIGR02645 ARCH_P_rylase putati 79.3 13 0.00028 36.9 9.0 63 130-192 410-478 (493)
52 KOG0557 Dihydrolipoamide acety 77.6 1.8 3.9E-05 42.5 2.7 25 162-186 55-79 (470)
53 PF00529 HlyD: HlyD family sec 77.5 1.5 3.3E-05 37.8 1.9 25 162-186 12-36 (305)
54 cd06850 biotinyl_domain The bi 77.0 6.7 0.00015 26.2 4.7 33 132-182 35-67 (67)
55 TIGR03327 AMP_phos AMP phospho 76.3 17 0.00037 36.1 9.0 64 129-192 410-479 (500)
56 COG0511 AccB Biotin carboxyl c 76.1 3.1 6.6E-05 34.0 3.3 19 165-183 84-102 (140)
57 cd06663 Biotinyl_lipoyl_domain 75.8 4.9 0.00011 28.1 3.9 25 161-185 15-39 (73)
58 PRK04350 thymidine phosphoryla 75.8 15 0.00033 36.4 8.5 63 130-192 402-470 (490)
59 COG0213 DeoA Thymidine phospho 75.6 14 0.0003 36.3 8.0 64 129-192 332-408 (435)
60 TIGR02643 T_phosphoryl thymidi 75.2 16 0.00035 35.7 8.4 61 130-190 336-409 (437)
61 PRK08225 acetyl-CoA carboxylas 73.8 4 8.6E-05 28.8 3.0 21 163-183 50-70 (70)
62 PRK05641 putative acetyl-CoA c 73.7 3.8 8.3E-05 34.3 3.3 23 163-185 96-118 (153)
63 PTZ00144 dihydrolipoamide succ 73.4 3.6 7.8E-05 39.7 3.5 25 161-185 60-84 (418)
64 PF12700 HlyD_2: HlyD family s 71.7 4.6 0.0001 35.1 3.5 26 162-187 31-56 (328)
65 TIGR02971 heterocyst_DevB ABC 71.6 13 0.00028 33.2 6.4 24 163-186 28-51 (327)
66 PRK06549 acetyl-CoA carboxylas 70.0 5.4 0.00012 32.7 3.3 22 163-184 73-94 (130)
67 PLN02226 2-oxoglutarate dehydr 69.9 4.5 9.7E-05 39.7 3.3 24 162-185 108-131 (463)
68 TIGR00830 PTBA PTS system, glu 69.3 5.3 0.00012 32.4 3.1 22 162-183 81-102 (121)
69 TIGR01843 type_I_hlyD type I s 66.6 4 8.6E-05 37.0 2.1 27 161-187 53-79 (423)
70 TIGR01347 sucB 2-oxoglutarate 65.8 6.7 0.00014 37.4 3.5 25 161-185 16-40 (403)
71 cd00210 PTS_IIA_glc PTS_IIA, P 65.5 7 0.00015 31.8 3.1 22 162-183 81-102 (124)
72 cd06848 GCS_H Glycine cleavage 64.4 18 0.0004 27.2 5.1 31 154-185 25-55 (96)
73 TIGR01514 NAPRTase nicotinate 64.2 15 0.00033 35.3 5.6 40 175-214 101-155 (394)
74 TIGR00998 8a0101 efflux pump m 63.3 6.5 0.00014 34.9 2.8 24 163-186 54-77 (334)
75 PRK05704 dihydrolipoamide succ 63.0 7.5 0.00016 37.1 3.3 24 162-185 19-42 (407)
76 PRK10559 p-hydroxybenzoic acid 62.4 6.7 0.00015 35.5 2.7 24 163-186 59-82 (310)
77 PRK15136 multidrug efflux syst 62.2 7.6 0.00017 36.3 3.2 24 163-186 73-96 (390)
78 PRK09439 PTS system glucose-sp 61.6 8.9 0.00019 32.8 3.2 22 162-183 103-124 (169)
79 PRK03598 putative efflux pump 61.4 6.6 0.00014 35.3 2.5 24 163-186 55-78 (331)
80 PLN02983 biotin carboxyl carri 61.1 6.6 0.00014 36.3 2.4 22 164-185 217-238 (274)
81 PF00358 PTS_EIIA_1: phosphoen 60.8 7.2 0.00016 32.0 2.4 22 162-183 85-106 (132)
82 PRK07051 hypothetical protein; 60.7 12 0.00025 27.4 3.3 20 164-183 60-79 (80)
83 PRK10476 multidrug resistance 60.5 8.1 0.00018 35.0 2.9 23 163-185 60-82 (346)
84 TIGR01730 RND_mfp RND family e 59.7 21 0.00046 30.9 5.3 23 164-186 39-61 (322)
85 TIGR00531 BCCP acetyl-CoA carb 58.5 8.2 0.00018 32.2 2.4 22 163-184 99-120 (156)
86 COG0511 AccB Biotin carboxyl c 57.8 10 0.00022 31.0 2.8 23 161-183 117-139 (140)
87 TIGR01000 bacteriocin_acc bact 56.0 9.6 0.00021 36.2 2.7 27 160-186 68-94 (457)
88 COG2190 NagE Phosphotransferas 55.7 12 0.00025 31.9 2.9 22 162-183 88-109 (156)
89 PRK07051 hypothetical protein; 55.3 12 0.00026 27.4 2.6 22 164-185 23-44 (80)
90 PRK11854 aceF pyruvate dehydro 55.2 10 0.00022 38.1 2.9 24 162-185 221-244 (633)
91 PRK06302 acetyl-CoA carboxylas 54.3 10 0.00022 31.6 2.3 24 162-185 97-120 (155)
92 TIGR02927 SucB_Actino 2-oxoglu 53.7 13 0.00029 37.1 3.4 24 162-185 152-175 (590)
93 TIGR03794 NHPM_micro_HlyD NHPM 53.5 13 0.00027 34.8 3.0 25 163-187 70-94 (421)
94 PLN02744 dihydrolipoyllysine-r 53.1 13 0.00028 37.2 3.1 24 162-185 129-152 (539)
95 PF00364 Biotin_lipoyl: Biotin 52.9 14 0.0003 26.6 2.5 35 130-182 40-74 (74)
96 TIGR01348 PDHac_trf_long pyruv 52.9 12 0.00026 37.0 2.9 25 161-185 131-155 (546)
97 TIGR01108 oadA oxaloacetate de 52.8 14 0.0003 37.1 3.4 24 161-184 527-550 (582)
98 PRK11855 dihydrolipoamide acet 51.6 15 0.00032 36.2 3.3 25 161-185 134-158 (547)
99 PF13375 RnfC_N: RnfC Barrel s 50.7 13 0.00029 29.0 2.3 25 161-185 40-64 (101)
100 PRK09578 periplasmic multidrug 50.2 39 0.00085 31.1 5.7 22 164-185 76-97 (385)
101 PF05896 NQRA: Na(+)-transloca 49.8 14 0.0003 33.8 2.6 35 160-194 38-84 (257)
102 PRK11578 macrolide transporter 48.9 16 0.00035 33.4 3.0 22 164-185 74-95 (370)
103 PRK09783 copper/silver efflux 48.3 32 0.00069 32.4 4.9 22 165-186 137-159 (409)
104 PRK15030 multidrug efflux syst 48.2 17 0.00036 33.9 3.0 22 164-185 78-99 (397)
105 PRK05889 putative acetyl-CoA c 48.1 24 0.00052 25.0 3.1 20 163-182 51-70 (71)
106 PLN02528 2-oxoisovalerate dehy 47.9 19 0.00042 34.4 3.4 22 163-184 16-37 (416)
107 cd06849 lipoyl_domain Lipoyl d 47.5 30 0.00066 22.2 3.4 23 162-184 17-39 (74)
108 PRK14042 pyruvate carboxylase 47.4 20 0.00044 36.2 3.6 25 161-185 535-559 (596)
109 PRK11556 multidrug efflux syst 47.4 17 0.00038 34.2 3.0 23 164-186 100-122 (415)
110 PRK09859 multidrug efflux syst 47.4 17 0.00038 33.5 2.9 22 164-185 74-95 (385)
111 COG0845 AcrA Membrane-fusion p 46.6 50 0.0011 28.1 5.4 24 161-184 76-99 (372)
112 PRK11856 branched-chain alpha- 46.4 22 0.00048 33.4 3.5 24 162-185 19-42 (411)
113 cd03522 MoeA_like MoeA_like. T 45.1 1.8E+02 0.0038 27.1 9.1 55 128-184 75-129 (312)
114 PRK14040 oxaloacetate decarbox 43.8 23 0.0005 35.7 3.3 25 161-185 534-558 (593)
115 PRK11854 aceF pyruvate dehydro 42.4 25 0.00055 35.3 3.4 21 163-183 18-38 (633)
116 PRK11855 dihydrolipoamide acet 42.1 28 0.0006 34.3 3.5 25 161-185 17-41 (547)
117 TIGR01349 PDHac_trf_mito pyruv 41.4 25 0.00053 33.9 3.0 23 162-184 16-38 (435)
118 COG1726 NqrA Na+-transporting 39.3 6 0.00013 38.3 -1.4 36 161-196 39-86 (447)
119 PRK06748 hypothetical protein; 39.0 38 0.00083 25.8 3.1 34 132-183 41-74 (83)
120 TIGR02712 urea_carbox urea car 38.7 29 0.00064 37.7 3.4 24 162-185 1143-1166(1201)
121 TIGR02927 SucB_Actino 2-oxoglu 37.7 36 0.00078 34.1 3.6 24 162-185 19-42 (590)
122 PRK11892 pyruvate dehydrogenas 37.6 34 0.00074 33.4 3.3 24 162-185 19-42 (464)
123 TIGR00531 BCCP acetyl-CoA carb 36.8 36 0.00079 28.3 3.0 22 162-183 135-156 (156)
124 PRK06302 acetyl-CoA carboxylas 36.5 37 0.0008 28.2 3.0 23 161-183 133-155 (155)
125 TIGR01348 PDHac_trf_long pyruv 36.2 38 0.00081 33.6 3.4 24 162-185 16-39 (546)
126 COG1566 EmrA Multidrug resista 35.2 37 0.0008 32.2 3.1 26 161-186 63-88 (352)
127 TIGR01995 PTS-II-ABC-beta PTS 33.7 36 0.00079 34.2 2.9 22 162-183 545-566 (610)
128 PF01551 Peptidase_M23: Peptid 33.4 41 0.0009 24.6 2.5 20 166-185 56-75 (96)
129 KOG2511 Nicotinic acid phospho 32.7 26 0.00057 33.9 1.7 50 163-212 97-146 (420)
130 TIGR01235 pyruv_carbox pyruvat 31.9 50 0.0011 35.9 3.7 25 160-184 1083-1107(1143)
131 PRK09282 pyruvate carboxylase 31.2 48 0.001 33.3 3.3 23 162-184 533-555 (592)
132 PRK09824 PTS system beta-gluco 31.1 41 0.00088 34.2 2.8 22 162-183 561-582 (627)
133 PRK10255 PTS system N-acetyl g 31.0 42 0.0009 34.4 2.9 21 163-183 582-602 (648)
134 TIGR03077 not_gcvH glycine cle 29.6 1.2E+02 0.0026 24.1 4.7 41 142-185 16-56 (110)
135 cd01433 Ribosomal_L16_L10e Rib 28.6 85 0.0019 24.5 3.7 16 172-187 75-90 (112)
136 PF13437 HlyD_3: HlyD family s 26.9 80 0.0017 23.2 3.2 22 164-185 12-33 (105)
137 PRK01202 glycine cleavage syst 26.8 1.1E+02 0.0024 24.6 4.1 41 142-185 23-63 (127)
138 PRK05641 putative acetyl-CoA c 26.7 72 0.0016 26.7 3.1 20 163-182 133-152 (153)
139 PRK06549 acetyl-CoA carboxylas 26.0 70 0.0015 26.2 2.9 19 164-182 111-129 (130)
140 cd06254 M14_ASTE_ASPA_like_4 A 26.0 76 0.0016 28.4 3.4 22 163-184 234-255 (288)
141 PRK00624 glycine cleavage syst 24.2 1.7E+02 0.0038 23.3 4.8 41 142-185 18-58 (114)
142 cd06255 M14_ASTE_ASPA_like_5 A 24.0 87 0.0019 28.3 3.4 25 163-187 242-266 (293)
143 KOG0559 Dihydrolipoamide succi 23.7 68 0.0015 31.4 2.7 71 91-184 74-148 (457)
144 COG4770 Acetyl/propionyl-CoA c 23.7 89 0.0019 32.1 3.6 25 160-184 584-608 (645)
145 cd06251 M14_ASTE_ASPA_like_1 A 22.9 95 0.0021 27.8 3.4 23 163-185 230-252 (287)
146 PF01597 GCV_H: Glycine cleava 22.2 1.8E+02 0.004 23.1 4.6 40 143-185 18-57 (122)
147 PF02843 GARS_C: Phosphoribosy 22.2 1.3E+02 0.0029 22.8 3.6 37 167-203 41-77 (93)
148 PRK12999 pyruvate carboxylase; 22.1 86 0.0019 34.1 3.4 24 161-184 1086-1109(1146)
149 TIGR01730 RND_mfp RND family e 21.8 1.4E+02 0.003 25.8 4.1 36 133-186 134-169 (322)
150 TIGR03309 matur_yqeB selenium- 21.3 94 0.002 28.5 3.0 23 162-184 174-196 (256)
151 TIGR00998 8a0101 efflux pump m 21.1 1.4E+02 0.0031 26.4 4.1 35 133-185 204-238 (334)
152 TIGR01936 nqrA NADH:ubiquinone 20.6 59 0.0013 31.7 1.7 25 161-185 39-63 (447)
153 cd06252 M14_ASTE_ASPA_like_2 A 20.3 1.1E+02 0.0024 27.8 3.4 24 163-186 255-278 (316)
No 1
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=100.00 E-value=1.8e-34 Score=261.72 Aligned_cols=127 Identities=75% Similarity=1.146 Sum_probs=120.0
Q ss_pred cCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcC
Q 027948 89 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168 (216)
Q Consensus 89 ~~~~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~ 168 (216)
.|...++.+|...+++.|++||+||+|.+||+||.++++++..+++++++||+||+||++++.++|+.+|++++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~ 85 (308)
T PLN02716 6 AMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAI 85 (308)
T ss_pred ccccccccCChHHHHHHHHHHHHHhCCCCCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeC
Confidence 35566777887789999999999999844999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 169 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 169 DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
||+.|++|++|++++|++++||++||++||||||||||||+|++||.
T Consensus 86 dG~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~ 132 (308)
T PLN02716 86 DGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMAD 132 (308)
T ss_pred CCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999984
No 2
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.7e-34 Score=257.63 Aligned_cols=119 Identities=39% Similarity=0.595 Sum_probs=113.4
Q ss_pred CChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecC
Q 027948 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (216)
Q Consensus 97 ~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G 176 (216)
++.+.++++|++||+||+|.+||+||+++++++..+++++++||+||+||+++++++|+.+|++++++|+++||+.+++|
T Consensus 6 ~~~~~~~~~i~~~l~ED~~~~gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g 85 (281)
T PRK06106 6 LPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPG 85 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCC
Confidence 55557999999999999993399999999999999999999999999999999999999999889999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 177 ~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 86 ~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~ 124 (281)
T PRK06106 86 DVIATISGPARGLLTAERTALNFLCHLSGIATATASIVA 124 (281)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984
No 3
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-34 Score=258.23 Aligned_cols=117 Identities=44% Similarity=0.710 Sum_probs=112.9
Q ss_pred ChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCC
Q 027948 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177 (216)
Q Consensus 98 p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~ 177 (216)
|...+++.++.||.||+| +||+||+++++++.++++.+++||+||+||+++++++|+.+|++++++|+++||++++||+
T Consensus 2 ~~~~~~~~v~~~L~ED~g-~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~ 80 (280)
T COG0157 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD 80 (280)
T ss_pred chhhHHHHHHHHHHhhcC-CCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCC
Confidence 346789999999999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 178 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 178 vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+|++++|+++.||++||++||||||||||||+|++||.
T Consensus 81 ~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~ 118 (280)
T COG0157 81 VLAEIEGPARALLTAERTALNFLQHLSGIATATARMVE 118 (280)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999984
No 4
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.2e-34 Score=256.27 Aligned_cols=124 Identities=35% Similarity=0.523 Sum_probs=117.5
Q ss_pred ccCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCC-cEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 027948 88 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (216)
Q Consensus 88 ~~~~~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~-~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~ 166 (216)
+||...||. ..+++.|++||+||+| +||+||+++++.+ .++++++++||+||+||+++++++|+.+|++++++|+
T Consensus 2 ~~~~~~~~~---~~~~~~i~~~l~ED~~-~~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~ 77 (288)
T PRK07428 2 SSMAMLPPW---LVLDPLLQQWLREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPL 77 (288)
T ss_pred CCcccCCcc---hhHHHHHHHHHHhcCC-CCCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEE
Confidence 477888887 6688999999999999 6999999988887 8999999999999999999999999999988899999
Q ss_pred cCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 167 v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++||+.|++|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 78 ~~dG~~v~~g~~i~~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~ 126 (288)
T PRK07428 78 VAEGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVE 126 (288)
T ss_pred cCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984
No 5
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.8e-33 Score=252.36 Aligned_cols=114 Identities=43% Similarity=0.645 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
.+++.|+.||+||+| +||+||+.+++.+..+++++++||+||+||++++.++|+.+|++++++|+++||+.+++|++|+
T Consensus 6 ~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G~~i~ 84 (281)
T PRK06543 6 IIDRIVEAALAEDAP-WGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAGDILA 84 (281)
T ss_pred HHHHHHHHHHHhCCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCCCEEE
Confidence 478999999999999 6999999999889999999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|++++||++||++||||||+|||||+||+||.
T Consensus 85 ~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~ 119 (281)
T PRK06543 85 TVTGPARSVLTAERIALNFTQRMSGIATLTAAFVD 119 (281)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 6
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.4e-33 Score=253.14 Aligned_cols=113 Identities=32% Similarity=0.574 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
.++++|++||+||+| +||+|| .+++.+..+++++++||+||+||+++++++|+.+|++++++|+++||+.|++|++|+
T Consensus 24 ~~~~~i~~~L~ED~~-~gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i~ 101 (294)
T PRK06978 24 AIARNVADAIAEDVG-SGDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTVC 101 (294)
T ss_pred HHHHHHHHHHHhcCC-CCCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEEE
Confidence 389999999999999 699999 567788899999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|++++||++||++||||||+|||||+||+||.
T Consensus 102 ~~~G~a~~lL~~ER~aLN~l~~~SGIAT~T~~~V~ 136 (294)
T PRK06978 102 ELEGPARALLTAERNALNFLQLLSGVASATRRYVD 136 (294)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 7
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.4e-33 Score=251.63 Aligned_cols=118 Identities=30% Similarity=0.481 Sum_probs=112.8
Q ss_pred CChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEc--CCCCeee
Q 027948 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KDGDHVH 174 (216)
Q Consensus 97 ~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v--~DGd~V~ 174 (216)
.|...++++|+.||+||+| +||+||.++++++.++++++++||+||+||+++++++|+.+|++++++|++ +||++++
T Consensus 8 ~~~~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~~v~ 86 (290)
T PRK06559 8 LTPFQIDDTLKAALREDVH-SEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLT 86 (290)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCCCCEec
Confidence 4445799999999999999 699999999999999999999999999999999999999999889999998 9999999
Q ss_pred cCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 175 ~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+|++|++++|++++||++||++||||||||||||+||+||.
T Consensus 87 ~G~~i~~v~G~a~~ll~~ER~alN~l~~~SGIAT~T~~~V~ 127 (290)
T PRK06559 87 SGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVE 127 (290)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984
No 8
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.3e-33 Score=248.37 Aligned_cols=114 Identities=42% Similarity=0.590 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
.+++.|+.||+||+| +||+||.++++.+..+++++++||+||+||+++++++|+.+|++++++|+++||+.|++|++|+
T Consensus 5 ~~~~~i~~~l~ED~~-~~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~ 83 (277)
T PRK08072 5 KLKQALNRFFLEDIG-EGDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIA 83 (277)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEE
Confidence 589999999999999 6999999888777689999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|++++||++||++||||||+|||||+|++||.
T Consensus 84 ~~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~ 118 (277)
T PRK08072 84 TVQGPVASLLTGERVILNLIQRMSGIATMTRKAVL 118 (277)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 9
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=100.00 E-value=5.5e-33 Score=249.47 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEE
Q 027948 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 181 (216)
Q Consensus 102 i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~ 181 (216)
-++.|++||+||+| +||+||+++++.+..+++++++||+||+||+++++++|+.+| ++++|+++||+.|++|++|++
T Consensus 5 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~ 81 (284)
T PRK06096 5 SDAQLDALLLEDIQ-GGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLIS 81 (284)
T ss_pred cHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45678999999999 699999999999999999999999999999999999999997 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 182 VSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 182 I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++|++++||++||++||||||||||||+|++||.
T Consensus 82 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~ 115 (284)
T PRK06096 82 AQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLA 115 (284)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985
No 10
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=100.00 E-value=5.5e-33 Score=248.60 Aligned_cols=111 Identities=23% Similarity=0.368 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEE
Q 027948 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 181 (216)
Q Consensus 102 i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~ 181 (216)
-+..|++||+||+| +||+||.++++.+.++++++++||+||+||+++++++|+.+| ++++|+++||++|++|++|++
T Consensus 4 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~ 80 (277)
T TIGR01334 4 STGLIDNLLLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLLE 80 (277)
T ss_pred CHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45678999999999 699999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 182 VSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 182 I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++|++++||++||++||||||||||||+||+||.
T Consensus 81 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~ 114 (277)
T TIGR01334 81 AKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVT 114 (277)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984
No 11
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.2e-32 Score=246.32 Aligned_cols=115 Identities=36% Similarity=0.617 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCE
Q 027948 99 TYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQ 178 (216)
Q Consensus 99 ~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~v 178 (216)
+..+++.|+.||+||+| +||+|| .+++.+.++++++++||+||+||++++.++|+.+|++++++|+++||+.|++|++
T Consensus 6 ~~~~~~~i~~~l~ED~~-~gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~ 83 (277)
T PRK05742 6 TAEIEANVRRALAEDIG-SGDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQV 83 (277)
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCE
Confidence 34688999999999999 699999 5667788999999999999999999999999999988999999999999999999
Q ss_pred EEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 179 FGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 179 Il~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++++|++++||++||++||||||||||||+|++||.
T Consensus 84 i~~i~G~~~~ll~~ER~~ln~l~~~SGIAT~T~~~v~ 120 (277)
T PRK05742 84 LFHLEGPARSLLTGERSALNFLQLLSGVATRARHYAD 120 (277)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984
No 12
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.9e-32 Score=245.34 Aligned_cols=121 Identities=31% Similarity=0.478 Sum_probs=113.0
Q ss_pred CCCCChhhHHHHHHHHHHhhcCCCC-CcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHH-HcCC-CcEEEEEcCCC
Q 027948 94 LPSHPTYDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWSLKDG 170 (216)
Q Consensus 94 ~p~~p~~~i~~~I~~aL~EDig~~G-DlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~-~lg~-~leve~~v~DG 170 (216)
--.+....++++|++||+||+| +| |+||+.+++++.++++++++||+||+||+++++++|+ .+|+ +++++|+++||
T Consensus 7 ~~~~~~~~~~~~i~~~l~ED~~-~~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~~~dG 85 (289)
T PRK07896 7 LAGLELDEARAVIRRALDEDLR-YGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVEDG 85 (289)
T ss_pred ccCCCHHHHHHHHHHHHHHhCC-CCCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEEcCCC
Confidence 3445567799999999999999 56 9999999999999999999999999999999999995 6687 78999999999
Q ss_pred CeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 171 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 171 d~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+.|+||++|++++|++++||++||++||||||||||||+|++||.
T Consensus 86 ~~v~~g~~i~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~ 130 (289)
T PRK07896 86 ARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVD 130 (289)
T ss_pred CEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984
No 13
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=2.6e-32 Score=242.17 Aligned_cols=111 Identities=53% Similarity=0.870 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
+.|++||+||+| +||+||..+++++..+++++++||+||+||++++.++|+.+|++++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 2 AIVRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEE
Confidence 468999999999 6999999999899999999999999999999999999999988899999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 184 GRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 184 G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++++||.+||++||||||+|||||+|++||.
T Consensus 81 G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v~ 112 (268)
T cd01572 81 GPARSLLTAERTALNFLQRLSGIATLTRRYVE 112 (268)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 14
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=99.98 E-value=4.9e-32 Score=244.73 Aligned_cols=115 Identities=32% Similarity=0.582 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 027948 100 YDLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~----~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~ 175 (216)
.+++++|++||+||+|. +||+|| .+++.+..+++++++||+||+||+++++++|+.+|++++++|+++||+.|++
T Consensus 21 ~~~~~~i~~~l~ED~~~~~~~~gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~ 99 (296)
T PRK09016 21 LDIPAAVAQALREDLGGTVDANNDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITA 99 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecC
Confidence 36899999999999994 499999 5667788999999999999999999999999999988999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 100 G~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~ 139 (296)
T PRK09016 100 NQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVE 139 (296)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
No 15
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=99.98 E-value=3.8e-32 Score=241.51 Aligned_cols=109 Identities=27% Similarity=0.318 Sum_probs=105.4
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
..|++||+||+| +||+||+++++.+.++++++++||+||+||++++.++|+.+| ++++|+++||+.|+||++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 2 AELERLLLEDAP-YGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred HHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEE
Confidence 468999999999 699999999998999999999999999999999999999997 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 184 GRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 184 G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++++||++||++||||||+|||||+|++||.
T Consensus 79 G~~~~ll~~Er~~ln~l~~~SGIAT~t~~~v~ 110 (272)
T cd01573 79 GPAAALHLGWKVAQTLLEWASGIATATAEMVA 110 (272)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 16
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.98 E-value=8.9e-32 Score=240.95 Aligned_cols=109 Identities=41% Similarity=0.571 Sum_probs=104.7
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
..|++||+||+| +||+||+++++.+..+++++++||+||+||++++.++|+.++ ++++|+++||+.|++|++|++++
T Consensus 4 ~~l~~~l~ED~~-~gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 4 EYLLRFVEEDAP-FGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEE
Confidence 558999999999 699999988877899999999999999999999999999997 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 184 GRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 184 G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++++||++||++||||||+|||||+|++||.
T Consensus 81 G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~ 112 (278)
T PRK08385 81 GNARAILLVERTALNIIGRMSGIATETRKLVE 112 (278)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 17
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=99.97 E-value=9.6e-32 Score=238.35 Aligned_cols=108 Identities=44% Similarity=0.710 Sum_probs=104.4
Q ss_pred HHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 105 ~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
+|+.||+||+| +||+||+++++.+.++++++++||+||+||++++.++|+.++ ++++|+++||+.+++|++|++++|
T Consensus 1 ~i~~~l~ED~~-~gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 1 LLDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred ChHHHHhhCCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEE
Confidence 37899999999 699999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 185 RAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 185 ~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++++||.+||++||||||+|||||+|++||.
T Consensus 78 ~~~~il~~Er~~ln~l~~~SGIAT~t~~~v~ 108 (265)
T TIGR00078 78 PARSLLTAERTALNFLGRLSGIATATRKYVE 108 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999984
No 18
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.97 E-value=1.5e-31 Score=238.68 Aligned_cols=111 Identities=32% Similarity=0.517 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
.++++|++||+||+| +||+|| .+++.+..+++++++|++||+||++++.++|+.+| ++++|+++||+.+++|++|+
T Consensus 2 ~~~~~i~~~l~ED~~-~~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 77 (273)
T PRK05848 2 EIKDFLEAALKEDLG-RGDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILM 77 (273)
T ss_pred cHHHHHHHHHHhcCC-CCCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEE
Confidence 378999999999999 699999 56677889999999999999999999999999997 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|++++||++||++||||||+|||||+|++||.
T Consensus 78 ~i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~ 112 (273)
T PRK05848 78 EIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVE 112 (273)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 19
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.97 E-value=1.5e-31 Score=236.68 Aligned_cols=110 Identities=48% Similarity=0.739 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 104 ~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
+.|++||+||+| +||+||+++++++..++++|++||+||+||++++.++|+.+| +++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 2 ALLDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEE
Confidence 568999999999 699999999988999999999999999999999999999996 699999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 184 GRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 184 G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++++||.+||++||||||+|||||+|++||.
T Consensus 80 G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~ 111 (269)
T cd01568 80 GPARSLLTAERVALNLLQRLSGIATATRRYVE 111 (269)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 20
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.96 E-value=8.8e-29 Score=186.20 Aligned_cols=88 Identities=47% Similarity=0.754 Sum_probs=81.1
Q ss_pred cCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHH
Q 027948 114 AGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 193 (216)
Q Consensus 114 ig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aE 193 (216)
+| +||+||+++++.+.+++|++++||+||+||+++++++|+.++ ++++|+++||++|++|++|++++|++++||++|
T Consensus 1 i~-~gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 77 (88)
T PF02749_consen 1 IG-RGDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAE 77 (88)
T ss_dssp HT-TG-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHH
T ss_pred Cc-CCccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHH
Confidence 46 699999889999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027948 194 RVVLNFMQRMS 204 (216)
Q Consensus 194 RvaLNfLqrlS 204 (216)
|++||||||||
T Consensus 78 R~~LN~l~~~S 88 (88)
T PF02749_consen 78 RTALNFLQRLS 88 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 21
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=4.3e-28 Score=214.32 Aligned_cols=121 Identities=35% Similarity=0.462 Sum_probs=110.9
Q ss_pred CccCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 027948 87 FESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (216)
Q Consensus 87 ~~~~~~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~ 166 (216)
.+++-++||.||+++++..+...+.+|-+++||+++-+. ..+|.+.||||||+||++++++||+.++ ++|+|+
T Consensus 4 eV~~~llPpv~~a~~~d~viwL~ed~p~~~~G~~v~ga~-----~~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW~ 76 (300)
T KOG3008|consen 4 EVLALLLPPVTLAALVDSVIWLREDCPGLNYGALVSGAG-----PSEAALWAKSDGVLAGVPFADAIFTQLN--LQVEWF 76 (300)
T ss_pred chhcccCCCCchHHHHHHHHHHHhcCCCCcccceEecCC-----hHHHHhhccCCCeeecchhHHHHHhhhc--eeEEEE
Confidence 467889999999999999887666666677889987543 3689999999999999999999999998 999999
Q ss_pred cCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 167 v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
.+||+++.|+..++.++|+|+.|+.+||++||+|||+|||||+|+.++
T Consensus 77 ~KeGs~l~p~~~vaKv~GpAh~IllAERvaLN~l~R~SGIATa~~~~~ 124 (300)
T KOG3008|consen 77 LKEGSKLVPVARVAKVRGPAHCILLAERVALNTLARCSGIATAAAAAV 124 (300)
T ss_pred ecCCCeecccceeEeecCcceeeeehHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886
No 22
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.90 E-value=7.3e-24 Score=194.28 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhcCCCCCcccccc---cCCCcEEEEEEEee-----CCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 027948 103 KGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (216)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~al---i~~~~~~~A~IiAK-----EdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~ 174 (216)
++.|+.+|.||. |+|.|++.+ .. +..+++++++| ++||+||++++.++|+.++ +++ +.++||+.|.
T Consensus 9 ~~~~~~~l~~D~--Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~ 82 (343)
T PRK08662 9 EEEIKSGKTTDI--YFERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFD 82 (343)
T ss_pred HHHHHhhhHHHH--HHHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEec
Confidence 445788999999 489999877 45 88899999999 9999999999999999886 888 8999999999
Q ss_pred cCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 175 ~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
||+++++++|+++++|.+||++||+|+|+|||||+|++||.
T Consensus 83 ~g~~il~i~G~~~~ll~~Er~~Ln~L~~~SgIAT~t~~~v~ 123 (343)
T PRK08662 83 PKEPVMRIEGPYLEFGIYETALLGILAHASGIATAAARCKE 123 (343)
T ss_pred CCceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984
No 23
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.82 E-value=1.2e-20 Score=170.10 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCccccccc--CCCcEEEEEEEeeCC--eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHH
Q 027948 118 GDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 193 (216)
Q Consensus 118 GDlTT~ali--~~~~~~~A~IiAKEd--GVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aE 193 (216)
-|.|++.+. ..+..+++++++|++ ||+||++++.++|+.++ +++. .++||+.|.+|++|++++|+++.+|.+|
T Consensus 8 f~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~E 84 (302)
T cd01571 8 FLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGELE 84 (302)
T ss_pred HHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHHH
Confidence 477776542 357789999999999 99999999999999875 8885 5999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHhhhcc
Q 027948 194 RVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 194 RvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++||+|+|+|||||+|++||.
T Consensus 85 r~~Ln~L~~~SgIAT~t~~~v~ 106 (302)
T cd01571 85 TAILGILARASSIATNAARVKL 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 24
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.81 E-value=1.8e-19 Score=157.74 Aligned_cols=97 Identities=35% Similarity=0.539 Sum_probs=90.6
Q ss_pred Cccccccc----CCCcEEEEEEEeeCC--eEEEcHHHHHHHHHHcC-CCcEEEEEcCCCCeeecCCEEEEEEechhhhHH
Q 027948 119 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 191 (216)
Q Consensus 119 DlTT~ali----~~~~~~~A~IiAKEd--GVlAGl~~a~~If~~lg-~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~ 191 (216)
|+|+..+. .++.++++++++|++ +|+||++++.++|+.++ +++.+.+.++||+.+++|+++++++|++++++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 67777676 678899999999999 99999999999999995 458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 192 AERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 192 aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+||++||+|+|+|||||.|++||.
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~ 104 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVE 104 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.78 E-value=1.5e-18 Score=160.24 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=80.4
Q ss_pred CcEEEEEEEee-CCeEEEcHHHHHHHHHHcCCCcE--EEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 027948 129 DMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205 (216)
Q Consensus 129 ~~~~~A~IiAK-EdGVlAGl~~a~~If~~lg~~le--ve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSG 205 (216)
+..+++++++| ++||+||++++.++|+.++.+.+ ..+.++||+.|.||++|++++|++.+++.+||++||+|+|+||
T Consensus 36 ~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v~~gepvl~i~G~~~~l~~~Et~iLnlL~~~Sg 115 (352)
T PRK07188 36 NNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDIINPFETVLEIEGPYENFGFLEGIIDGILARRTS 115 (352)
T ss_pred CCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999 99999999999999999863222 5679999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcc
Q 027948 206 IATLTRVFVF 215 (216)
Q Consensus 206 IAT~Trr~V~ 215 (216)
|||.|++||.
T Consensus 116 IAT~a~r~v~ 125 (352)
T PRK07188 116 VATNAYNVVQ 125 (352)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 26
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=98.68 E-value=7.6e-08 Score=92.13 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=81.2
Q ss_pred HHHHhhcCCCCCccccccc----CCCcEEEEEEEeeC------CeEEEcHHHHHHHHHHcC-------------------
Q 027948 108 LALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD------------------- 158 (216)
Q Consensus 108 ~aL~EDig~~GDlTT~ali----~~~~~~~A~IiAKE------dGVlAGl~~a~~If~~lg------------------- 158 (216)
..|.-|... +|..... +.+.++..+++.|. .+|++|++.+-..++.+.
T Consensus 9 ~~L~TD~Yk---ltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~f 85 (464)
T PRK09243 9 LALLTDLYE---LTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDEDF 85 (464)
T ss_pred hHHHHHHHH---HHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHH
Confidence 345556542 4443223 45667888888876 269999999988887650
Q ss_pred --------CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 159 --------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 159 --------~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
-..++ +.++||+.|.+|+++++|+|+..+.+..|+.+||+|++.|+|||.+++++.
T Consensus 86 ~~~L~~~~f~~~I-~a~pEG~~v~~~epvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~r~~~ 149 (464)
T PRK09243 86 LDYLRNFRFTGDV-RAVPEGELVFPNEPLLRVEGPLAEAQLLETLLLNIINFQTLIATKAARIVS 149 (464)
T ss_pred HHHHHhCCCCCeE-EEEeCCccccCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01355 567899999999999999999999999999999999999999999999863
No 27
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=98.67 E-value=9.8e-08 Score=87.40 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=71.2
Q ss_pred CcEEEEEEEeeC------CeEEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCeeec
Q 027948 129 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 129 ~~~~~A~IiAKE------dGVlAGl~~a~~If~~lg---------------------------~~leve~~v~DGd~V~~ 175 (216)
+.+++.+++.|. -+|++|+..+-+.++.+. ..+++ +.++||+.|.+
T Consensus 22 ~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~~ 100 (327)
T cd01570 22 NKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVFP 100 (327)
T ss_pred CCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceecC
Confidence 556778888876 266899998877776540 12565 35899999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
|+++++|+|+....+..|+.+||++++.|+|||.+++++
T Consensus 101 ~~pvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~~~~ 139 (327)
T cd01570 101 NEPLLTVEGPLIEAQLLETLLLNLINFQTLIATKAARVR 139 (327)
T ss_pred CcEEEEEEEcHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985
No 28
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=98.18 E-value=1.1e-05 Score=73.63 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=71.2
Q ss_pred CcEEEEEEEeeCC------eEEEcHHHHHHHHHHcC-------------------------C--CcEEEEEcCCCCeeec
Q 027948 129 DMEVEAHFLAKED------GIIAGIALAEMIFHEVD-------------------------P--SLKVEWSLKDGDHVHK 175 (216)
Q Consensus 129 ~~~~~A~IiAKEd------GVlAGl~~a~~If~~lg-------------------------~--~leve~~v~DGd~V~~ 175 (216)
+..+..++.+|.. ++++|++.+-+.+..+- . .+++ +.++||+.+.+
T Consensus 21 ~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i-~a~~eG~~~~~ 99 (343)
T cd01567 21 NTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEI-YALPEGTVVFP 99 (343)
T ss_pred CeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEE-EEeCCcccccC
Confidence 5567888888874 79999999887776431 1 2444 35789999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
++++++|+|+..+....|+.+||+++++|++||.+++.+
T Consensus 100 ~~~~i~IeG~~~~~~~~Et~lL~i~~~~t~~at~~~~~~ 138 (343)
T cd01567 100 KEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKK 138 (343)
T ss_pred CCeEEEEEechHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 29
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=97.72 E-value=0.00018 Score=68.95 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=68.2
Q ss_pred EEEEEEEeeC------CeEEEcHHHHHHHHHHcCC---------------------------CcEEEEEcCCCCeeecCC
Q 027948 131 EVEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHKGL 177 (216)
Q Consensus 131 ~~~A~IiAKE------dGVlAGl~~a~~If~~lg~---------------------------~leve~~v~DGd~V~~G~ 177 (216)
++..+++.|. ..|+||++.+-+.++.+.- ..++ +.++||+.|.+++
T Consensus 27 ~~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I-~A~~EG~~v~~~e 105 (443)
T PRK12484 27 PATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDV-RAVPEGTVVFPNE 105 (443)
T ss_pred eEEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceE-EEEeCCeeecCCc
Confidence 4667777775 4579999999887775420 0144 3567999999999
Q ss_pred EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 178 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 178 vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
++++|+|+..+--..|-.+||++.+.|.|||.+++++
T Consensus 106 p~l~Iegp~~e~~llET~lL~il~~~s~iATka~ri~ 142 (443)
T PRK12484 106 PLLEVTAPLIEAQLVETFLLNQINHQSLIASKAARCV 142 (443)
T ss_pred EEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985
No 30
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=97.68 E-value=0.00021 Score=68.55 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=69.0
Q ss_pred cEEEEEEEeeC------CeEEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCeeecC
Q 027948 130 MEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHKG 176 (216)
Q Consensus 130 ~~~~A~IiAKE------dGVlAGl~~a~~If~~lg---------------------------~~leve~~v~DGd~V~~G 176 (216)
.++..+++.|. -.|++|++.+-..++.+. -.+++. .++||+.|.++
T Consensus 23 ~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~~ 101 (443)
T TIGR01513 23 QPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVR-ALPEGSLVFPN 101 (443)
T ss_pred ceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEE-EecCCccccCC
Confidence 35777788775 357799998877776530 124443 47999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 177 ~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
+++++|+|+..+.-..|-.+||++.+.|.|||.+++++
T Consensus 102 ep~l~Iegp~~~~~llEt~lL~~i~~~s~iATka~r~~ 139 (443)
T TIGR01513 102 EPLLQVEGPLIEAQLLETLVLNIINFQTLIATKAARIV 139 (443)
T ss_pred cEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985
No 31
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=97.37 E-value=0.0007 Score=64.30 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccc----CCCcEEEEEEEeeCC------eEEEcHHHHHHHHHHcCC-----------
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDP----------- 159 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali----~~~~~~~A~IiAKEd------GVlAGl~~a~~If~~lg~----------- 159 (216)
..+..++..|.-|..- +|....+ +.+..+...+..|.+ .++||++.+-+.++.+.-
T Consensus 6 ~~~~~i~~~L~TD~Yk---ltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~ 82 (405)
T COG1488 6 KSEPDIKSLLDTDLYK---LTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL 82 (405)
T ss_pred chhHHHhhhhHhHHHH---HHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhhc
Confidence 3455677777777752 4443222 233678888999976 788999999888887310
Q ss_pred ------------CcEEEE-EcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 160 ------------SLKVEW-SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 160 ------------~leve~-~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
..+++. .+++|+.+.+++.+++++|+..+-..-|-.+||++.+.|.|||++++++.
T Consensus 83 ~~~~~~fl~~L~~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~iatka~r~~~ 151 (405)
T COG1488 83 PFFKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASLIATKAARVKD 151 (405)
T ss_pred ccccHHHHHHHhhCCCceEEEeccccccCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022222 78899999999999999999999999999999999999999999999864
No 32
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=96.91 E-value=0.0035 Score=60.79 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCC--cEEEEEcCCCCeeecCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 148 ALAEMIFHEVDPS--LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 148 ~~a~~If~~lg~~--leve~~v~DGd~V~~G~vIl~I~G~A~~LL----~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+....+++..+.. +++ +.++||+.|.+++++++|+|+..+.. -.|..+||++.+.|.|||.+++++.
T Consensus 83 ~~~~~~~~~~~g~~p~~I-~AvpEGtvv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~ 155 (463)
T PRK09198 83 AGWRRIVDKYGGYLPLRI-KAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQ 155 (463)
T ss_pred HHHHHHHHhcCCCCceEE-EEecCCceecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677755322 445 36899999999999999999998877 6999999999999999999999864
No 33
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=96.64 E-value=0.0052 Score=58.81 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCC--cEEEEEcCCCCeeecCCEEEEEEechhhh----HHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 148 ALAEMIFHEVDPS--LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 148 ~~a~~If~~lg~~--leve~~v~DGd~V~~G~vIl~I~G~A~~L----L~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+..+.+.+..+.. +++ ..++||+.|.+++++++|+|+..+. --.|..+||.+.+.|.|||.++++++
T Consensus 81 ~~~~~i~~l~~~~lp~~I-~AvpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~ 153 (407)
T cd01569 81 DGWRHILELHDGYLPIEI-RAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKK 153 (407)
T ss_pred HHHHHHHHHcCCCCceEE-EEecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543312 445 3789999999999999999999888 78899999999999999999999864
No 34
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=96.36 E-value=0.006 Score=59.32 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~A~~LL----~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++ +.++||+.|-+++++++|+|+..+.. -.|..+||.+.+.|.|||.++++++
T Consensus 101 ~~I-~AvpEGtvvf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~ 158 (470)
T PHA02594 101 IEV-RAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKK 158 (470)
T ss_pred ceE-EEecCCceecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 57899999999999999999987444 7899999999999999999999864
No 35
>PLN02885 nicotinate phosphoribosyltransferase
Probab=95.88 E-value=0.042 Score=54.43 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=51.1
Q ss_pred HHHHHcCC-CcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhc
Q 027948 152 MIFHEVDP-SLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214 (216)
Q Consensus 152 ~If~~lg~-~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V 214 (216)
..++.++. .+++. .++||+-|.+++++++|+|+...--..|-.+||++.+.|.|||.+++++
T Consensus 91 ~yL~~~~~~~V~I~-A~~EG~lvf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~ 153 (545)
T PLN02885 91 DYLRGLDCSDVEVY-AIPEGSVVFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHR 153 (545)
T ss_pred HHHHhCCCCCceEE-ecCCCcEecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 13443 4789999999999999999998888899999999999999999998876
No 36
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.68 E-value=0.069 Score=36.35 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEechhh
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRAHS 188 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A~~ 188 (216)
.++++++|+.|++||+|+++.-+...
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHHHH
Confidence 46789999999999999999876443
No 37
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.43 E-value=0.27 Score=35.58 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+|++++|+.|++||+|++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 56999999999999999999753
No 38
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.95 E-value=0.82 Score=33.91 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=28.3
Q ss_pred cCCCcEEEEEcCCCCeeecCCEEEEEEechhh-hHHHHH
Q 027948 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS-IVIAER 194 (216)
Q Consensus 157 lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~-LL~aER 194 (216)
.|+..-+.++++=||+|++||+++++..+-.. +-.+..
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~ 66 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVE 66 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHH
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHH
Confidence 34567789999999999999999999999887 433333
No 39
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=89.80 E-value=0.43 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEech
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.=.+|++++||.|++||++++++-.-
T Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 12 SVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEecc
Confidence 34789999999999999999987653
No 40
>PRK06748 hypothetical protein; Validated
Probab=89.46 E-value=0.45 Score=36.35 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.=++|++++||+|++||.|++++-
T Consensus 14 ~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 14 KVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 347899999999999999999986
No 41
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=84.95 E-value=2.1 Score=40.77 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCCCeeec----CCEEEEEEechhhhHHHHHHHHHHHHHHh---------------HHHHHHhhhcc
Q 027948 168 KDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQRMS---------------GIATLTRVFVF 215 (216)
Q Consensus 168 ~DGd~V~~----G~vIl~I~G~A~~LL~aERvaLNfLqrlS---------------GIAT~Trr~V~ 215 (216)
.+|..|.+ |+.+++|+|+-.+.-.-|-.+||++++++ =|||++++++.
T Consensus 88 ~e~~~v~~~~~~~~~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~ 154 (377)
T cd01401 88 PEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLE 154 (377)
T ss_pred cCeeEEecCCCCCeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 48888877 99999999999999999999999999854 48899888753
No 42
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=84.94 E-value=3.8 Score=39.38 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=33.9
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHH-----HhH----------HHHHHhhh
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQR-----MSG----------IATLTRVF 213 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqr-----lSG----------IAT~Trr~ 213 (216)
|+++++|+|+..+...-|-.+||++++ .++ +||.+.++
T Consensus 106 ~~~~i~I~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~ 158 (400)
T PRK05321 106 GQLDIRIEGPWLETILWEVPLLAIISELYFRARSPEVLYAQAKRRLWEKIELL 158 (400)
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998 544 77777766
No 43
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=84.60 E-value=1.3 Score=31.30 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=20.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
=+.|+++.|+.|++|+++++++-.
T Consensus 12 i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 12 VWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEEeCCCCEECCCCEEEEEEcC
Confidence 356889999999999999998754
No 44
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=84.48 E-value=1.1 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|++++||.|++||+|+++++.
T Consensus 18 ~~~~~~~~~g~~v~~~~~~~~~e~~ 42 (371)
T PRK14875 18 KVAGWLVQEGDEVEKGDELLDVETD 42 (371)
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEec
Confidence 3478999999999999999999876
No 45
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=83.21 E-value=1.5 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EE-EEEcCCCCeeecCCEEEEEEe
Q 027948 162 KV-EWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 ev-e~~v~DGd~V~~G~vIl~I~G 184 (216)
.+ +|+++.|+.|++|+.+++++.
T Consensus 9 ~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 9 TVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 44 599999999999999999985
No 46
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=82.83 E-value=1.2 Score=42.45 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=22.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
=++|+++.||.|++||+|++|+-+
T Consensus 19 I~~W~~k~GD~V~~gd~L~eVeTD 42 (404)
T COG0508 19 IVEWLKKVGDKVKEGDVLVEVETD 42 (404)
T ss_pred EEEEecCCCCeecCCCeeEEEEcC
Confidence 389999999999999999999876
No 47
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=82.72 E-value=13 Score=36.33 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=45.8
Q ss_pred cEEEEEEEeeCCeEEEcHHHHH--HHHHH-----------cCCCcEEEEEcCCCCeeecCCEEEEEEechhhh
Q 027948 130 MEVEAHFLAKEDGIIAGIALAE--MIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 189 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~--~If~~-----------lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~L 189 (216)
.+-+.++.|+++|.+.-++--. .+... .|+..-++++++-||+|++||++++|..+-...
T Consensus 337 ~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~~~ 409 (440)
T PRK05820 337 APHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDEER 409 (440)
T ss_pred CCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCHHH
Confidence 4568889999999998876433 33322 345677899999999999999999999655544
No 48
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=82.68 E-value=11 Score=35.16 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.9
Q ss_pred EEEEeeCCeEEEcHHH--HHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 134 AHFLAKEDGIIAGIAL--AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 134 A~IiAKEdGVlAGl~~--a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
..+.+++.|.+..++. ..++.+..| +.++..++=|++|.+|++++++.
T Consensus 196 ~~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 196 QPIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred eEEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 3499999999999987 445555555 89999999999999999999995
No 49
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=81.97 E-value=14 Score=36.01 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=49.1
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC-----------CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHH
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 195 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg-----------~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERv 195 (216)
..+.+..+.|.++|.+..++-.. .+...+| +..-++++++-||+|++||+++++..+....-.+.+.
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~~~~~~~~ 410 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANRENVEDVKAK 410 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHHHHHHHHH
Confidence 34568889999999999887433 3333443 3566899999999999999999999655444444333
Q ss_pred H
Q 027948 196 V 196 (216)
Q Consensus 196 a 196 (216)
+
T Consensus 411 ~ 411 (434)
T PRK06078 411 F 411 (434)
T ss_pred H
Confidence 3
No 50
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=81.86 E-value=8.9 Score=36.98 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred cEEEEEEEeeCCeEEEcHHHHH--HHHHH-----------cCCCcEEEEEcCCCCeeecCCEEEEEEechhh
Q 027948 130 MEVEAHFLAKEDGIIAGIALAE--MIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~--~If~~-----------lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~ 188 (216)
..-+.++.|.++|.+..++--. .+... .|+..-++++++=||+|++||++++|+.+-..
T Consensus 330 ~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~ 401 (405)
T TIGR02644 330 AKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPI 401 (405)
T ss_pred CCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHh
Confidence 4567889999999999876433 23332 34567789999999999999999999966444
No 51
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=79.26 E-value=13 Score=36.95 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=49.2
Q ss_pred cEEEEEEEeeCCeEEEcHHHHH--HHHHHcC----CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHH
Q 027948 130 MEVEAHFLAKEDGIIAGIALAE--MIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~--~If~~lg----~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~a 192 (216)
.+-+..+.|.++|.+..++--. .+.+.+| +..-++++++=||+|++||++++|..+....|..
T Consensus 410 ~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~l~~ 478 (493)
T TIGR02645 410 GIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGELDY 478 (493)
T ss_pred CCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHHHHH
Confidence 3568889999999999987433 4444444 4567889999999999999999999777665544
No 52
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=77.62 E-value=1.8 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEEech
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
=+.|.+++||.+.+||+|++|+=+-
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 4889999999999999999998653
No 53
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=77.47 E-value=1.5 Score=37.76 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEech
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
=-+.+++||+.|++||+++++.-.-
T Consensus 12 V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 12 VTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEEEccCcCEEeCCCEEEEEEeec
Confidence 3456899999999999999998654
No 54
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=77.03 E-value=6.7 Score=26.15 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=25.7
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEE
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I 182 (216)
....+.++.+|++. ...+++|+.|++|+.++++
T Consensus 35 ~~~~i~ap~~G~v~------------------~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 35 MENEVTAPVAGVVK------------------EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEEeCCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 45667777777665 4577899999999999874
No 55
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=76.28 E-value=17 Score=36.11 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=48.8
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC----CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHH
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg----~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~a 192 (216)
..+-+..+.|.++|.+..++--. .+...+| +..-++++++=||+|++||+++++..+....+..
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~~l~~ 479 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEWRLEN 479 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHHHHHH
Confidence 34568889999999999987433 4444443 4567889999999999999999999766655443
No 56
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=76.06 E-value=3.1 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.5
Q ss_pred EEcCCCCeeecCCEEEEEE
Q 027948 165 WSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 165 ~~v~DGd~V~~G~vIl~I~ 183 (216)
.+++.||.|++||++|.|+
T Consensus 84 ~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 84 PFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EeeccCCEEcCCCEEEEEE
Confidence 5788999999999998886
No 57
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=75.81 E-value=4.9 Score=28.11 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.+|++++|+.|++|+.+++++..
T Consensus 15 ~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 15 TVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEEcCCcCEECCCCEEEEEEeC
Confidence 3456999999999999999998764
No 58
>PRK04350 thymidine phosphorylase; Provisional
Probab=75.76 E-value=15 Score=36.36 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=48.9
Q ss_pred cEEEEEEEeeCCeEEEcHHHHH--HHHHHcC----CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHH
Q 027948 130 MEVEAHFLAKEDGIIAGIALAE--MIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~--~If~~lg----~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~a 192 (216)
.+-+..+.|.++|.+..++--. ++...+| +..-++++++=||+|++||++++|..+.+..+..
T Consensus 402 a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~l~~ 470 (490)
T PRK04350 402 GDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGELDY 470 (490)
T ss_pred CCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHHHHH
Confidence 3568889999999999987433 4444443 4567889999999999999999999776655543
No 59
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=75.60 E-value=14 Score=36.26 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=49.4
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC-----------CCcEEEEEcCCCCeeecCCEEEEEEechhhhHHH
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg-----------~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~a 192 (216)
..+-++.+.|+++|++..++-.. .+...+| ...-+..+++-|+.|++|++|+++.-..+..+..
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 44578999999999999886543 3333333 3456888999999999999999999976666554
No 60
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=75.20 E-value=16 Score=35.70 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred cEEEEEEEeeCCeEEEcHHHHH--HHH-----------HHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhH
Q 027948 130 MEVEAHFLAKEDGIIAGIALAE--MIF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 190 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~--~If-----------~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL 190 (216)
.+.+..+.|+++|.+..++-.. .+. ...|+..-++++++=||+|++||++++|..+-...+
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~ 409 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADESDA 409 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCHHHH
Confidence 4568889999999999887443 222 123456678999999999999999999996655543
No 61
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=73.79 E-value=4 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~ 183 (216)
.++++++|+.|++|+.|++++
T Consensus 50 ~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 50 KKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEecCCCEECCCCEEEEEC
Confidence 467899999999999999874
No 62
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=73.69 E-value=3.8 Score=34.31 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++|++++||.|++||.++.++..
T Consensus 96 ~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 96 LRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEEeCCCCEEcCCCEEEEEeec
Confidence 47899999999999999998754
No 63
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=73.44 E-value=3.6 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.=++|++++||.|++||+|++++-+
T Consensus 60 ~I~~w~v~~Gd~V~~Gd~L~~vEtd 84 (418)
T PTZ00144 60 TVVEWKKKVGDYVKEDEVICIIETD 84 (418)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEEc
Confidence 4578999999999999999988764
No 64
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=71.67 E-value=4.6 Score=35.13 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEechh
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGRAH 187 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~A~ 187 (216)
.+++++++|+.|++|++|+++.-+..
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~~~ 56 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSSDL 56 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-HHH
T ss_pred EEEEEeCCcCEECCCCEEEEEEChhh
Confidence 34899999999999999999987643
No 65
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=71.58 E-value=13 Score=33.16 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++||.|++|++|+++....
T Consensus 28 ~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 28 KKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEEEccCCCEecCCcEEEEecCcH
Confidence 566899999999999999999863
No 66
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=70.02 E-value=5.4 Score=32.70 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
.+|++++||.|++||.|++++-
T Consensus 73 ~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 73 LKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEEeCCCCEECCCCEEEEEec
Confidence 4689999999999999999874
No 67
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=69.95 E-value=4.5 Score=39.66 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
=++|++++||.|++||+|++++-+
T Consensus 108 I~~w~v~~GD~V~~Gq~L~~VEtd 131 (463)
T PLN02226 108 LATFLKKPGERVQADEAIAQIETD 131 (463)
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 466778888888888888777643
No 68
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=69.28 E-value=5.3 Score=32.37 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.|+++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4778899999999999999985
No 69
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.60 E-value=4 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEechh
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGRAH 187 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~A~ 187 (216)
.=.++++++||.|++|++++++.-...
T Consensus 53 ~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 53 IVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEEEEeCCCCEecCCCeEEEEccchh
Confidence 335789999999999999999987754
No 70
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=65.78 E-value=6.7 Score=37.45 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.=++|++++||.|++||.+++++.+
T Consensus 16 ~i~~w~v~~Gd~V~~g~~l~~vEtd 40 (403)
T TIGR01347 16 TVAEWHKKVGDTVKRDENIVEIETD 40 (403)
T ss_pred EEEEEEeCCcCEeCCCCEEEEEEEc
Confidence 3478888888888888888888764
No 71
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=65.48 E-value=7 Score=31.77 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-+++++++||+|++||.|+++-
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4778899999999999999874
No 72
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=64.41 E-value=18 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 154 f~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+.+| .+..-+..+.|+.|++|+.++++++.
T Consensus 25 ~~~lG-~i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 25 QDLLG-DIVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred HhhCC-CEEEEEecCCCCEEeCCCEEEEEEEc
Confidence 44455 36666777889999999999999975
No 73
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=64.19 E-value=15 Score=35.33 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=35.9
Q ss_pred cCCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHhhhc
Q 027948 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRVFV 214 (216)
Q Consensus 175 ~G~vIl~I~G~A~~LL~aERvaLNfLqrl---------------SGIAT~Trr~V 214 (216)
.|+.+++|+|+-..-...|-.+||+++++ +=|||++.+++
T Consensus 101 eg~~~i~i~Gp~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~ 155 (394)
T TIGR01514 101 KGKLDIRISGSWRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLK 155 (394)
T ss_pred CCcEEEEEEeehHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999983 56999988875
No 74
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=63.28 E-value=6.5 Score=34.89 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++|+.|++||+|+++.-+-
T Consensus 54 ~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 54 IEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred EEEEeCCCCEEcCCCEEEEECchH
Confidence 346789999999999999998664
No 75
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=62.97 E-value=7.5 Score=37.10 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
=++|++++||.|++||.|++++-+
T Consensus 19 i~~w~v~~Gd~V~~Gd~l~~vEtd 42 (407)
T PRK05704 19 IATWHKKPGDAVKRDEVLVEIETD 42 (407)
T ss_pred EEEEEeCCcCEeCCCCEEEEEEec
Confidence 477888888888888888888754
No 76
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=62.36 E-value=6.7 Score=35.50 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.9
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++||.|++||+|+++.-+-
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcHH
Confidence 456899999999999999998754
No 77
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=62.24 E-value=7.6 Score=36.28 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.4
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++|+.|++||+|+++.-+-
T Consensus 73 ~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 73 TKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEEcCCCCEECCCCEEEEECcHH
Confidence 345789999999999999998654
No 78
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=61.61 E-value=8.9 Score=32.76 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.|+++-
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 4778899999999999999874
No 79
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=61.41 E-value=6.6 Score=35.29 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++||.|++||+|+++..+.
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChHH
Confidence 456899999999999999998873
No 80
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=61.11 E-value=6.6 Score=36.30 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.8
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.|+++.||.|++||+|+.|+-.
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 4799999999999999999864
No 81
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=60.80 E-value=7.2 Score=31.97 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++++++.||+|++||.|+++-
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 4788999999999999999984
No 82
>PRK07051 hypothetical protein; Validated
Probab=60.72 E-value=12 Score=27.42 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEcCCCCeeecCCEEEEEE
Q 027948 164 EWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~ 183 (216)
++.+++|+.|++|++|+++.
T Consensus 60 ~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 60 EFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEcCCcCEECCCCEEEEEe
Confidence 56889999999999999884
No 83
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.49 E-value=8.1 Score=35.00 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+.++++|+.|++||+|+++.-.
T Consensus 60 ~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 60 VELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEEeCCCCEEcCCCEEEEECcH
Confidence 34589999999999999999965
No 84
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=59.67 E-value=21 Score=30.91 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++++++|+.|++|++|+++.-+.
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCHH
Confidence 46789999999999999998764
No 85
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=58.47 E-value=8.2 Score=32.17 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
-.|+++.||.|++||+|+.++-
T Consensus 99 ~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 99 AKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CCccccCCCEeCCCCEEEEEEe
Confidence 4578999999999999999874
No 86
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=57.83 E-value=10 Score=31.01 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEE
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~ 183 (216)
.=.+.++++||.|+.||+|++|+
T Consensus 117 ~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 117 VVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred EEEEEEecCCCccCCCCEEEEec
Confidence 44667889999999999999986
No 87
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.04 E-value=9.6 Score=36.22 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEech
Q 027948 160 SLKVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 160 ~leve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++=-+.+++|||.|++||+++++.-..
T Consensus 68 G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 68 NAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred cEEEEEEcCCCCEecCCCEEEEECchH
Confidence 344567999999999999999997653
No 88
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=55.68 E-value=12 Score=31.94 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.++++-
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 4778999999999999999874
No 89
>PRK07051 hypothetical protein; Validated
Probab=55.30 E-value=12 Score=27.37 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.6
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+++++|+.|++|+.+++++..
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEc
Confidence 4678999999999999999875
No 90
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=55.23 E-value=10 Score=38.06 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++||.|++||.|++++-+
T Consensus 221 v~~w~v~~Gd~V~~g~~l~~vetd 244 (633)
T PRK11854 221 VTEVMVKVGDKVEAEQSLITVEGD 244 (633)
T ss_pred EEEEEecCCCeecCCCceEEEEec
Confidence 488999999999999999998754
No 91
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=54.29 E-value=10 Score=31.58 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.|+++.||.|++||+|+.++-.
T Consensus 97 ~~~~~v~~Gd~V~~Gq~l~~iEam 120 (155)
T PRK06302 97 DAPPFVEVGDTVKEGQTLCIIEAM 120 (155)
T ss_pred CCCcccCCCCEeCCCCEEEEEEec
Confidence 345789999999999999998753
No 92
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=53.67 E-value=13 Score=37.08 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=18.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++||.|++||.|++++-+
T Consensus 152 i~~w~v~~Gd~V~~g~~l~~vEtd 175 (590)
T TIGR02927 152 ITQWLKAVGDKIEVDEPILEVSTD 175 (590)
T ss_pred EEEEEeCCCCEecCCCEeEEEEec
Confidence 467888888888888888877654
No 93
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=53.48 E-value=13 Score=34.84 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.0
Q ss_pred EEEEcCCCCeeecCCEEEEEEechh
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRAH 187 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A~ 187 (216)
.+.++++|+.|++|++|+++.-+..
T Consensus 70 ~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 70 IDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred EEEECCCcCEECCCCEEEEECcHHH
Confidence 3457999999999999999987644
No 94
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=53.15 E-value=13 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++||.|++||++++++-+
T Consensus 129 I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 129 IARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred EEEEEecCCCEecCCCeeEEEeec
Confidence 467888888888888888877643
No 95
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=52.89 E-value=14 Score=26.60 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=28.1
Q ss_pred cEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEE
Q 027948 130 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 130 ~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I 182 (216)
.+....+.|..+|++ .++++++|+.|..|++|++|
T Consensus 40 ~K~~~~v~a~~~G~i------------------~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGII------------------KEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEE------------------EEESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEE------------------EEEEECCCCEECCCCEEEEC
Confidence 456788888888854 24578899999999999986
No 96
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=52.86 E-value=12 Score=37.02 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|+++.||.|++|+.|++++-+
T Consensus 131 ~i~~w~v~~Gd~V~~g~~l~~vetd 155 (546)
T TIGR01348 131 TVIEVLVKVGDTVSADQSLITLESD 155 (546)
T ss_pred EEeEEeeCCCCcccCCCeeEEEEec
Confidence 4588999999999999999998743
No 97
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=52.76 E-value=14 Score=37.06 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.-++|.+++||.|++||+|+.++-
T Consensus 527 ~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 527 SIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEe
Confidence 357999999999999999999874
No 98
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=51.63 E-value=15 Score=36.20 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|++++||.|++|+.|++++.+
T Consensus 134 ~i~~w~v~~Gd~V~~g~~l~~vetd 158 (547)
T PRK11855 134 EVIEWLVKVGDTVEEDQSLITVETD 158 (547)
T ss_pred EEeEEEeCCCCeecCCCeeEEEEec
Confidence 4578999999999999999998765
No 99
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=50.74 E-value=13 Score=29.02 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
...+..++.||+|++||.|++..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 4566789999999999999999874
No 100
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=50.15 E-value=39 Score=31.13 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++++++||.|++||+|+++.-.
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEECCCCCEEcCCCEEEEECCH
Confidence 4588999999999999999544
No 101
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=49.81 E-value=14 Score=33.77 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCeeecCCEEEE------------EEechhhhHHHHH
Q 027948 160 SLKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAER 194 (216)
Q Consensus 160 ~leve~~v~DGd~V~~G~vIl~------------I~G~A~~LL~aER 194 (216)
+++.+..+++||+|++||.+++ ++|...+|-++||
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFEDKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEeeCCCCCcEEecCCCeEEEEEecCCC
Confidence 3788889999999999999986 3555555655555
No 102
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=48.92 E-value=16 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++++++|+.|++||+|+++.-.
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 4679999999999999999754
No 103
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=48.34 E-value=32 Score=32.45 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.1
Q ss_pred EE-cCCCCeeecCCEEEEEEech
Q 027948 165 WS-LKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 165 ~~-v~DGd~V~~G~vIl~I~G~A 186 (216)
.+ +.+||.|+|||+|+++.-+.
T Consensus 137 l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCHH
Confidence 44 79999999999999998663
No 104
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=48.22 E-value=17 Score=33.88 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+.++++||.|++||+|+++.-.
T Consensus 78 ~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 78 KRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEcCCCCEecCCCEEEEECCH
Confidence 3588999999999999999744
No 105
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=48.09 E-value=24 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.2
Q ss_pred EEEEcCCCCeeecCCEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I 182 (216)
.++++++|+.|+.|+.|+++
T Consensus 51 ~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 51 SKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEEEeCCCCEECCCCEEEEE
Confidence 34568999999999999987
No 106
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=47.87 E-value=19 Score=34.41 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=15.6
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
++|+++.||.|++||.+++++-
T Consensus 16 ~~w~v~~Gd~V~~g~~l~~vEt 37 (416)
T PLN02528 16 LRWFVKEGDQVEEFQPLCEVQS 37 (416)
T ss_pred EEEEeCCCCEECCCCEEEEEEe
Confidence 6677777777777777776654
No 107
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=47.49 E-value=30 Score=22.20 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-..|++.+|+.+.+|+.++.++-
T Consensus 17 i~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 17 IVEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEEECCCCEEcCCCEEEEEEe
Confidence 35788999999999999988753
No 108
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=47.44 E-value=20 Score=36.20 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|+++.||.|++||+|++++-.
T Consensus 535 ~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 535 SIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEec
Confidence 4579999999999999999999754
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=47.39 E-value=17 Score=34.21 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.0
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++++++|+.|++||+|+++.-+.
T Consensus 100 ~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 100 ALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EEECCCCCEecCCCEEEEECcHH
Confidence 45799999999999999997653
No 110
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=47.38 E-value=17 Score=33.49 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
..++++|+.|++||+|+++.-+
T Consensus 74 ~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 74 KRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEcCCcCEecCCCEEEEECcH
Confidence 3578999999999999999854
No 111
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=46.55 E-value=50 Score=28.11 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.-.+.++++||.|++|++++++.-
T Consensus 76 ~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 76 IVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred EEEEEEccCCCeecCCCEEEEECC
Confidence 557789999999999999999997
No 112
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=46.41 E-value=22 Score=33.42 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=20.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++|+.|++|+++++++.+
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vet~ 42 (411)
T PRK11856 19 IVEWLVKVGDTVKEGQPLAEVETD 42 (411)
T ss_pred EEEEEeCCcCEeCCCCEEEEEEec
Confidence 478899999999999999988654
No 113
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=45.14 E-value=1.8e+02 Score=27.06 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=44.6
Q ss_pred CCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 128 LDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 128 ~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
...+++..++|..+|++.==...-.-++.++ .+.+ .-..++..|++|+.|+.++=
T Consensus 75 ~~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~~-at~~~~~~v~~g~~vA~~ri 129 (312)
T cd03522 75 EPAEGRVNLFAERAGLLKVDVEALDALNAID-AITL-ATLHNNTPVEAGQMVATVKI 129 (312)
T ss_pred CCccceEEEEECCCeeEEEcHHHHHhhhCCC-CEEE-EEcCCCeEeCCCCEEEEEEE
Confidence 4567999999999999987776777777777 4544 56899999999999988763
No 114
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.76 E-value=23 Score=35.65 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|.+++||.|++||+|++++..
T Consensus 534 ~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 534 NIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4578999999999999999998754
No 115
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=42.35 E-value=25 Score=35.34 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=12.3
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~ 183 (216)
++|++++||.|++||.|++++
T Consensus 18 ~~~~v~~Gd~V~~g~~l~~vE 38 (633)
T PRK11854 18 TEILVKVGDKVEAEQSLITVE 38 (633)
T ss_pred EEEEeCCCCEECCCCEEEEEE
Confidence 455666666666666655553
No 116
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=42.15 E-value=28 Score=34.31 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-++|++++||.|++|++|++++..
T Consensus 17 ~i~~~~v~~Gd~V~~g~~l~~iEt~ 41 (547)
T PRK11855 17 EVIEWLVKEGDTVEEDQPLVTVETD 41 (547)
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEec
Confidence 3468999999999999999998755
No 117
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=41.45 E-value=25 Score=33.91 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=16.8
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-++|++++||.|+.|+.+++++-
T Consensus 16 i~~w~v~~Gd~V~~g~~l~~vet 38 (435)
T TIGR01349 16 LAKWLKKEGDKVNPGDVIAEIET 38 (435)
T ss_pred EEEEEeCCCCccCCCCEEEEEEe
Confidence 36777778888887777777743
No 118
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=39.30 E-value=6 Score=38.35 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCeeecCCEEEE------------EEechhhhHHHHHHH
Q 027948 161 LKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAERVV 196 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~------------I~G~A~~LL~aERva 196 (216)
+.....+++||.|++|+++++ +.|...+|.++||-+
T Consensus 39 mrp~mkV~~gD~VkkGq~LfEdKknpgv~~Tap~sG~V~aI~RG~KRv 86 (447)
T COG1726 39 MRPSMKVREGDAVKKGQVLFEDKKNPGVVFTAPVSGKVTAIHRGEKRV 86 (447)
T ss_pred CCCcceeccCCeeeccceeeecccCCCeEEeccCCceEEEeeccccee
Confidence 444456678888888887776 345555666665543
No 119
>PRK06748 hypothetical protein; Validated
Probab=38.97 E-value=38 Score=25.81 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.6
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
+...+.|.++|++. ++++++||.|..|++|++++
T Consensus 41 ~~~ei~Ap~~G~v~------------------~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 41 QKVEIKVGISGYIE------------------SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred ceEEEecCCCEEEE------------------EEEeCCCCEECCCCEEEEEE
Confidence 44577777777553 34678999999999999995
No 120
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=38.72 E-value=29 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
=++|++++||.|++||+|++++-.
T Consensus 1143 v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1143 FWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 468999999999999999998753
No 121
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=37.66 E-value=36 Score=34.10 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|+++.||.|+.|+++++++.+
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vEtd 42 (590)
T TIGR02927 19 ITQWLKAEGDTVELDEPLLEVSTD 42 (590)
T ss_pred EEEEEECCCCEEeCCCeEEEEEec
Confidence 368899999999999999888654
No 122
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=37.55 E-value=34 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-.+|++++||.|++|+.+++++-+
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~iETd 42 (464)
T PRK11892 19 LAKWLKKEGDKVKSGDVIAEIETD 42 (464)
T ss_pred EEEEEecCCCEecCCCeEEEEEec
Confidence 468999999999999999998654
No 123
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=36.77 E-value=36 Score=28.31 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
=.+++++||+.|..|+.+++++
T Consensus 135 v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 135 VVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEEeCCCCEECCCCEEEEEC
Confidence 3568999999999999999874
No 124
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=36.48 E-value=37 Score=28.19 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEE
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~ 183 (216)
.-.+++++||+.|..|+.|++++
T Consensus 133 ~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 133 VVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEEcCCCCEeCCCCEEEEeC
Confidence 34678999999999999999874
No 125
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=36.19 E-value=38 Score=33.60 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=17.1
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++||.|+.|++|++++..
T Consensus 16 i~~~~v~~Gd~V~~G~~l~~vet~ 39 (546)
T TIGR01348 16 VIEVLVKPGDKVEAGQSLITLESD 39 (546)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEcc
Confidence 357777777777777777777553
No 126
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=35.22 E-value=37 Score=32.19 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEech
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.-.++.++|.+.|++||++++|.=.-
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEECcHH
Confidence 34677899999999999999997543
No 127
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=33.74 E-value=36 Score=34.25 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.++++.
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEec
Confidence 4777899999999999999874
No 128
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=33.43 E-value=41 Score=24.60 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=15.1
Q ss_pred EcCCCCeeecCCEEEEEEec
Q 027948 166 SLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 166 ~v~DGd~V~~G~vIl~I~G~ 185 (216)
.++.||+|++|+.|..+-..
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSC
T ss_pred cceecccccCCCEEEecCCC
Confidence 37899999999999988643
No 129
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=32.72 E-value=26 Score=33.87 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=44.0
Q ss_pred EEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRV 212 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr 212 (216)
-+-.+.+|..+-++-.+++|+|+-..-...|--+||++..+|=+||-..+
T Consensus 97 ~~~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLvs~a~~~~~da~~ 146 (420)
T KOG2511|consen 97 PEEAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADW 146 (420)
T ss_pred chhhcccCceeccCCceEEEecchhheeeeechHHHHhhhHHheeecccc
Confidence 34467899999999999999999999999999999999999988876554
No 130
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=31.91 E-value=50 Score=35.92 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 160 ~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
+.-++|.+++||.|++||+|++++-
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 3457999999999999999999985
No 131
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.17 E-value=48 Score=33.34 Aligned_cols=23 Identities=26% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-+.|.+++|+.|++||++++++-
T Consensus 533 v~~~~V~~Gd~V~~Gq~L~~iea 555 (592)
T PRK09282 533 VVKVKVKEGDKVKAGDTVLVLEA 555 (592)
T ss_pred EEEEEeCCCCEECCCCEEEEEec
Confidence 46789999999999999999863
No 132
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=31.06 E-value=41 Score=34.25 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.++++.
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 4777899999999999999874
No 133
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=31.01 E-value=42 Score=34.40 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~ 183 (216)
++.++++||+|++||.++++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 566789999999999999874
No 134
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=29.65 E-value=1.2e+02 Score=24.10 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=26.2
Q ss_pred eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 142 GVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+--|+.... .+.+|. +.+--..+.|+.|++|+.+++|+..
T Consensus 16 ~~~vGiT~~a--q~~lG~-i~~v~lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 16 VVRLGLTSRM--QENLGN-ILHIDLPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEEeeCHHH--HHhcCC-EEEEECCCCCCEEcCCCEEEEEEec
Confidence 3455554332 344543 4333345779999999999999864
No 135
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=28.61 E-value=85 Score=24.49 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.5
Q ss_pred eeecCCEEEEEEechh
Q 027948 172 HVHKGLQFGKVSGRAH 187 (216)
Q Consensus 172 ~V~~G~vIl~I~G~A~ 187 (216)
+|++|++|+|+.|...
T Consensus 75 ~v~~G~iifEi~~~~~ 90 (112)
T cd01433 75 RVKPGQILFEVRGVPE 90 (112)
T ss_pred EECCCCEEEEEeCcCc
Confidence 6899999999999975
No 136
>PF13437 HlyD_3: HlyD family secretion protein
Probab=26.87 E-value=80 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.2
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+.++.|+.|.+|+.++++...
T Consensus 12 ~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 12 SINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EEeCCCCCEECCCCEEEEEEcc
Confidence 3456789999999999998764
No 137
>PRK01202 glycine cleavage system protein H; Provisional
Probab=26.81 E-value=1.1e+02 Score=24.58 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=28.4
Q ss_pred eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 142 GVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+.-|+.... .+.+|.=..++ ..+.|+.|++|+.+++|++.
T Consensus 23 ~~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~~~~IEs~ 63 (127)
T PRK01202 23 TATVGITDHA--QEQLGDIVFVE-LPEVGDEVKAGETFGVVESV 63 (127)
T ss_pred EEEEeeCHHH--HhhcCCeeEEE-cCCCCCEecCCCEEEEEEEc
Confidence 3566765444 55666433454 44679999999999999874
No 138
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.65 E-value=72 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.4
Q ss_pred EEEEcCCCCeeecCCEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I 182 (216)
.++++++|+.|++|+.|+++
T Consensus 133 ~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 133 KKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred EEEEcCCCCEECCCCEEEEe
Confidence 45678999999999999986
No 139
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.05 E-value=70 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.3
Q ss_pred EEEcCCCCeeecCCEEEEE
Q 027948 164 EWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I 182 (216)
++++++||.|+.|+.|+++
T Consensus 111 ~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 111 AIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEeCCCCEeCCCCEEEEe
Confidence 5689999999999999987
No 140
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=25.99 E-value=76 Score=28.43 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=18.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
++..++-|++|++||+|+++.=
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred EEEecCCCCEecCCCEEEEEEC
Confidence 5566788999999999999953
No 141
>PRK00624 glycine cleavage system protein H; Provisional
Probab=24.18 E-value=1.7e+02 Score=23.33 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=26.9
Q ss_pred eEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 142 GVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+.-|+.... .+.+|. +.+--..+.|+.|++|+.+++|+..
T Consensus 18 ~~~vGiT~~a--~~~lG~-i~~v~lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKM--QENLGN-ILHIDLPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHH--HHhcCC-EEEEECCCCCCEEeCCCEEEEEEec
Confidence 3566664433 344553 4333345779999999999999864
No 142
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=24.01 E-value=87 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEechh
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRAH 187 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A~ 187 (216)
++..++-|++|++||.|++|.-+..
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECCCC
Confidence 4556788999999999999976544
No 143
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=23.70 E-value=68 Score=31.44 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=46.0
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhcCCCCCcccc----cccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 027948 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM----ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (216)
Q Consensus 91 ~~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~----ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~ 166 (216)
.|.-|.....--+..|++||+. .||--.+ +.+. ..+.+..+-+...|++ .+++
T Consensus 74 tv~vP~faESiteG~l~~~lK~----~Gd~v~~DE~va~IE-TDK~tv~V~sP~sGvi------------------~e~l 130 (457)
T KOG0559|consen 74 TVEVPPFAESITEGDLAQWLKK----VGDRVNEDEAVAEIE-TDKTTVEVPSPASGVI------------------TELL 130 (457)
T ss_pred EEecCCcccccccchHHHHhhC----cccccccchhheeee-ccceeeeccCCCccee------------------eEEe
Confidence 3555665655566778878775 1342211 1122 2346667777777765 3448
Q ss_pred cCCCCeeecCCEEEEEEe
Q 027948 167 LKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 167 v~DGd~V~~G~vIl~I~G 184 (216)
++|||.|.+|+.++.|+-
T Consensus 131 vk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 131 VKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cCCCCcccCCceeEEecC
Confidence 999999999999999974
No 144
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=23.68 E-value=89 Score=32.14 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 160 ~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
++-+.+.+++|+.|.+||.++.++.
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEe
Confidence 5667889999999999999999874
No 145
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=22.87 E-value=95 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++..++=||+|++||+|+++.-+
T Consensus 230 ~~~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 230 LRSLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred EEEecCCCCEECCCCEEEEEECC
Confidence 56678889999999999999754
No 146
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=22.19 E-value=1.8e+02 Score=23.07 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=22.6
Q ss_pred EEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 143 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 143 VlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+.-|+.... .+.+|.=..++ ..+.|+.+++|+.++.|++.
T Consensus 18 ~~vGit~~a--~~~lG~i~~v~-lp~~g~~~~~g~~~~~ies~ 57 (122)
T PF01597_consen 18 VRVGITDFA--QDELGDIVYVE-LPKVGTKLKKGDPFASIESS 57 (122)
T ss_dssp EEEEE-HHH--HHHH-SEEEEE--B-TT-EE-TTSEEEEEEES
T ss_pred EEEEECchH--hhcCCceEEEE-EccCCCEEecCCcEEEEEEC
Confidence 344554433 45556423444 56889999999999999974
No 147
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=22.18 E-value=1.3e+02 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=32.1
Q ss_pred cCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHH
Q 027948 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 203 (216)
Q Consensus 167 v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrl 203 (216)
..||+.+..|..++.+.|...+|-.+.+.+.+-++..
T Consensus 41 ~~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~I 77 (93)
T PF02843_consen 41 KEDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEKI 77 (93)
T ss_dssp EETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTTS
T ss_pred eeCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhcc
Confidence 4599999999999999999999999999998887643
No 148
>PRK12999 pyruvate carboxylase; Reviewed
Probab=22.07 E-value=86 Score=34.10 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.-+++.+++||.|++||+++.++-
T Consensus 1086 ~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1086 SVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred EEEEEEcCCCCEECCCCEEEEEEc
Confidence 347899999999999999999874
No 149
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=21.77 E-value=1.4e+02 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.2
Q ss_pred EEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEech
Q 027948 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 133 ~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
...+.|..+|++. ...+..|+.+.+|+.|+++..+.
T Consensus 134 ~~~i~AP~~G~V~------------------~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 134 YTEIRAPFDGTIG------------------RRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred cCEEECCCCcEEE------------------EEEcCCCceeCCCCcEEEEEcCC
Confidence 4567788888773 33567899999999999887653
No 150
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=21.32 E-value=94 Score=28.53 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
.++..++-||.|+|||+|+.+.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC
Confidence 46668899999999999999976
No 151
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.08 E-value=1.4e+02 Score=26.37 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 133 ~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
...|.|+.+|++.- ..+..|+.|.+|+.++++.-.
T Consensus 204 ~~~I~AP~~G~V~~------------------~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 204 RTVIRAPFDGYVAR------------------RFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred CcEEEcCCCcEEEE------------------EecCCCCEeCCCCeeEEEEcC
Confidence 46788888887753 245688888888888888643
No 152
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.64 E-value=59 Score=31.72 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
...+..++.||+|++||.|++-+|.
T Consensus 39 ~~~k~~Vk~GD~V~~Gq~I~~~~~~ 63 (447)
T TIGR01936 39 MRPKMKVRPGDKVKAGQPLFEDKKN 63 (447)
T ss_pred CCCceEeCcCCEEcCCCEeEecCCC
Confidence 4566789999999999999988764
No 153
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.31 E-value=1.1e+02 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=18.9
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++..++=|+.|++||+|++|.-+.
T Consensus 255 ~~~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 255 FEPLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred EEEecCCCCEEcCCCEEEEEECCC
Confidence 344567799999999999997553
Done!