Query 027948
Match_columns 216
No_of_seqs 149 out of 1102
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0g_A Nicotinate-nucleotide p 100.0 1E-34 3.5E-39 261.3 10.6 123 92-215 16-138 (300)
2 1x1o_A Nicotinate-nucleotide p 100.0 5.5E-34 1.9E-38 253.9 12.9 118 97-215 9-126 (286)
3 3tqv_A Nicotinate-nucleotide p 100.0 6.4E-33 2.2E-37 248.1 15.3 118 95-215 12-129 (287)
4 1o4u_A Type II quinolic acid p 100.0 6.5E-32 2.2E-36 240.8 14.4 118 93-215 7-125 (285)
5 1qpo_A Quinolinate acid phosph 100.0 4.1E-32 1.4E-36 241.6 12.7 114 100-215 8-125 (284)
6 3gnn_A Nicotinate-nucleotide p 100.0 5.1E-32 1.7E-36 243.4 12.9 114 100-215 27-140 (298)
7 3paj_A Nicotinate-nucleotide p 100.0 1.5E-31 5.1E-36 242.4 14.2 115 100-215 44-162 (320)
8 2b7n_A Probable nicotinate-nuc 100.0 2.3E-30 7.9E-35 227.9 13.4 111 101-215 2-112 (273)
9 1qap_A Quinolinic acid phospho 100.0 2.7E-30 9.3E-35 230.9 13.7 114 100-215 20-139 (296)
10 2jbm_A Nicotinate-nucleotide p 100.0 1.3E-29 4.5E-34 226.2 13.8 110 101-215 16-125 (299)
11 3c2e_A Nicotinate-nucleotide p 100.0 2.9E-29 1E-33 223.5 12.4 110 101-215 12-127 (294)
12 2i14_A Nicotinate-nucleotide p 99.8 2.5E-19 8.4E-24 165.4 5.7 107 103-215 15-130 (395)
13 2i1o_A Nicotinate phosphoribos 99.8 3.7E-19 1.3E-23 164.5 6.7 107 103-215 15-134 (398)
14 2f7f_A Nicotinate phosphoribos 99.4 2.4E-12 8.1E-17 122.1 10.9 88 127-215 30-150 (494)
15 3os4_A Naprtase, nicotinate ph 96.5 0.00094 3.2E-08 62.1 2.6 87 129-215 32-159 (407)
16 1yir_A Naprtase 2, nicotinate 95.7 0.015 5.3E-07 53.8 6.3 79 129-214 36-162 (408)
17 3dhf_A Nicotinamide phosphorib 95.6 0.015 5.3E-07 55.1 5.9 53 161-215 114-170 (484)
18 1vlp_A Naprtase, nicotinate ph 94.6 0.018 6.2E-07 53.9 3.3 48 166-214 117-180 (441)
19 2im5_A Nicotinate phosphoribos 93.8 0.094 3.2E-06 48.3 6.3 78 129-213 27-155 (394)
20 4hl7_A Naprtase, nicotinate ph 92.9 0.034 1.2E-06 52.4 1.8 87 129-215 36-169 (446)
21 3crk_C Dihydrolipoyllysine-res 88.9 0.31 1.1E-05 34.8 3.2 25 161-185 21-45 (87)
22 1z6h_A Biotin/lipoyl attachmen 88.6 0.36 1.2E-05 32.5 3.2 23 163-185 11-33 (72)
23 1iyu_A E2P, dihydrolipoamide a 88.4 0.33 1.1E-05 33.8 3.0 23 163-185 16-38 (79)
24 2dnc_A Pyruvate dehydrogenase 87.6 0.39 1.3E-05 35.5 3.1 25 161-185 23-47 (98)
25 2d5d_A Methylmalonyl-COA decar 87.4 0.47 1.6E-05 31.9 3.2 22 164-185 18-39 (74)
26 1qjo_A Dihydrolipoamide acetyl 86.7 0.41 1.4E-05 33.1 2.7 25 161-185 16-40 (80)
27 1k8m_A E2 component of branche 85.5 0.41 1.4E-05 34.9 2.2 25 161-185 20-44 (93)
28 2dne_A Dihydrolipoyllysine-res 85.4 0.46 1.6E-05 35.8 2.5 24 162-185 24-47 (108)
29 1ghj_A E2, E2, the dihydrolipo 85.3 0.35 1.2E-05 33.6 1.7 24 162-185 18-41 (79)
30 2dsj_A Pyrimidine-nucleoside ( 84.9 5.6 0.00019 37.1 10.1 59 129-188 324-395 (423)
31 1dcz_A Transcarboxylase 1.3S s 84.8 0.76 2.6E-05 31.3 3.3 22 164-185 21-42 (77)
32 2dn8_A Acetyl-COA carboxylase 84.6 0.6 2E-05 34.2 2.8 33 134-184 18-50 (100)
33 1bdo_A Acetyl-COA carboxylase; 84.3 0.41 1.4E-05 33.2 1.7 22 164-185 24-45 (80)
34 1gjx_A Pyruvate dehydrogenase; 84.1 0.49 1.7E-05 32.9 2.0 24 162-185 18-41 (81)
35 2kcc_A Acetyl-COA carboxylase 84.0 0.68 2.3E-05 32.9 2.8 23 162-184 16-38 (84)
36 1ybe_A Naprtase, nicotinate ph 83.4 2.5 8.5E-05 39.6 7.1 40 174-213 129-190 (449)
37 2l5t_A Lipoamide acyltransfera 82.9 0.37 1.3E-05 33.2 1.0 24 162-185 18-41 (77)
38 1y8o_B Dihydrolipoyllysine-res 82.7 0.89 3E-05 35.7 3.2 24 161-184 43-66 (128)
39 1brw_A PYNP, protein (pyrimidi 82.5 5.5 0.00019 37.2 9.0 61 129-189 331-404 (433)
40 2ejm_A Methylcrotonoyl-COA car 82.1 0.92 3.1E-05 33.2 2.9 21 164-184 27-47 (99)
41 2k32_A A; NMR {Campylobacter j 82.1 0.97 3.3E-05 33.4 3.1 22 164-185 14-35 (116)
42 2jku_A Propionyl-COA carboxyla 79.8 0.79 2.7E-05 33.3 1.9 23 163-185 37-59 (94)
43 3h5q_A PYNP, pyrimidine-nucleo 79.5 7.2 0.00025 36.5 8.7 58 129-187 334-404 (436)
44 1pmr_A Dihydrolipoyl succinylt 75.1 0.34 1.2E-05 33.9 -1.3 24 162-185 19-42 (80)
45 2tpt_A Thymidine phosphorylase 72.6 5.6 0.00019 37.2 5.9 62 129-190 336-410 (440)
46 1uou_A Thymidine phosphorylase 70.9 19 0.00064 34.0 9.1 60 129-188 368-438 (474)
47 2k7v_A Dihydrolipoyllysine-res 65.8 0.66 2.2E-05 32.8 -1.5 22 163-184 14-35 (85)
48 1zy8_K Pyruvate dehydrogenase 64.5 1.4 4.7E-05 37.7 0.0 23 162-184 20-42 (229)
49 2d5d_A Methylmalonyl-COA decar 63.5 13 0.00045 24.5 4.9 34 132-183 41-74 (74)
50 3fpp_A Macrolide-specific effl 62.3 4.4 0.00015 34.6 2.8 23 164-186 44-66 (341)
51 2f1m_A Acriflavine resistance 62.1 2.7 9.4E-05 34.9 1.4 23 164-186 35-57 (277)
52 1dcz_A Transcarboxylase 1.3S s 59.5 15 0.00051 24.6 4.6 34 132-183 44-77 (77)
53 3dva_I Dihydrolipoyllysine-res 59.2 2 6.7E-05 39.8 0.0 23 162-184 19-41 (428)
54 3lnn_A Membrane fusion protein 58.7 12 0.00042 32.0 5.0 22 164-185 70-91 (359)
55 3our_B EIIA, phosphotransferas 58.5 6.3 0.00022 33.1 3.0 22 162-183 117-138 (183)
56 2gpr_A Glucose-permease IIA co 56.8 7.2 0.00025 31.5 3.0 22 162-183 90-111 (154)
57 1f3z_A EIIA-GLC, glucose-speci 53.3 8.9 0.0003 31.3 3.0 22 162-183 95-116 (161)
58 1bdo_A Acetyl-COA carboxylase; 52.2 11 0.00036 25.8 2.9 34 132-183 47-80 (80)
59 3n6r_A Propionyl-COA carboxyla 51.8 9.1 0.00031 37.1 3.3 24 161-184 622-645 (681)
60 3ne5_B Cation efflux system pr 51.3 17 0.00058 32.5 4.8 21 165-185 135-156 (413)
61 1vf7_A Multidrug resistance pr 50.2 6.7 0.00023 34.4 1.9 23 164-186 56-78 (369)
62 2l5t_A Lipoamide acyltransfera 49.5 15 0.00051 24.8 3.3 20 164-183 57-76 (77)
63 4dk0_A Putative MACA; alpha-ha 49.2 4.8 0.00017 34.6 0.8 24 163-186 44-67 (369)
64 1z6h_A Biotin/lipoyl attachmen 48.5 12 0.0004 24.8 2.6 36 132-185 35-70 (72)
65 1ax3_A Iiaglc, glucose permeas 48.4 8.3 0.00028 31.4 2.1 22 162-183 95-116 (162)
66 1j5k_A Heterogeneous nuclear r 44.6 80 0.0027 22.2 7.1 53 148-205 34-86 (89)
67 1iyu_A E2P, dihydrolipoamide a 44.6 21 0.0007 24.3 3.4 22 164-185 54-75 (79)
68 1ghj_A E2, E2, the dihydrolipo 43.1 17 0.00057 24.8 2.7 21 164-184 57-77 (79)
69 3hbl_A Pyruvate carboxylase; T 43.0 14 0.00048 38.2 3.2 23 162-184 1088-1110(1150)
70 2auk_A DNA-directed RNA polyme 42.4 13 0.00044 30.7 2.4 20 163-182 62-81 (190)
71 3va7_A KLLA0E08119P; carboxyla 41.1 15 0.00051 38.4 3.1 22 163-184 1179-1200(1236)
72 2auk_A DNA-directed RNA polyme 40.7 16 0.00054 30.2 2.6 21 163-183 166-186 (190)
73 1zzk_A Heterogeneous nuclear r 39.0 94 0.0032 21.5 6.5 54 147-205 26-79 (82)
74 1zko_A Glycine cleavage system 36.8 53 0.0018 25.8 5.0 41 140-184 29-70 (136)
75 2xha_A NUSG, transcription ant 36.0 19 0.00064 30.4 2.4 18 164-181 22-39 (193)
76 1k8m_A E2 component of branche 36.0 30 0.001 24.8 3.2 23 164-186 60-82 (93)
77 2k7v_A Dihydrolipoyllysine-res 35.7 26 0.00088 24.3 2.8 37 131-185 37-73 (85)
78 3crk_C Dihydrolipoyllysine-res 35.6 26 0.0009 24.5 2.8 23 164-186 61-84 (87)
79 1x4m_A FAR upstream element bi 35.4 1.1E+02 0.0037 21.8 6.3 51 148-201 35-85 (94)
80 2hh3_A KH-type splicing regula 35.0 1.4E+02 0.0046 22.1 7.0 50 148-202 31-80 (106)
81 3u9t_A MCC alpha, methylcroton 34.9 8.1 0.00028 37.4 0.0 25 160-184 611-635 (675)
82 3vot_A L-amino acid ligase, BL 33.9 69 0.0024 27.9 5.9 69 132-202 337-410 (425)
83 3bg3_A Pyruvate carboxylase, m 33.5 17 0.00058 35.9 2.0 23 162-184 660-682 (718)
84 3krm_A Insulin-like growth fac 31.1 1.3E+02 0.0046 22.8 6.5 54 147-203 104-157 (163)
85 3cdx_A Succinylglutamatedesucc 31.0 31 0.0011 30.4 3.1 23 163-185 278-300 (354)
86 3na6_A Succinylglutamate desuc 28.1 37 0.0013 29.8 3.1 22 164-185 269-290 (331)
87 2qf7_A Pyruvate carboxylase pr 28.0 29 0.00098 35.9 2.7 23 162-184 1106-1128(1165)
88 3gku_A Probable RNA-binding pr 26.1 94 0.0032 26.5 5.2 104 101-208 13-125 (225)
89 2hh2_A KH-type splicing regula 25.8 1.5E+02 0.005 21.7 5.7 51 148-201 27-78 (107)
90 2xhc_A Transcription antitermi 25.1 35 0.0012 30.9 2.4 64 100-181 16-79 (352)
91 2dne_A Dihydrolipoyllysine-res 24.6 49 0.0017 24.5 2.8 40 132-189 49-89 (108)
92 1y8o_B Dihydrolipoyllysine-res 24.5 66 0.0023 24.9 3.6 26 164-189 83-109 (128)
93 3fmc_A Putative succinylglutam 24.5 45 0.0015 29.8 3.0 22 163-184 301-322 (368)
94 2dnc_A Pyruvate dehydrogenase 24.4 32 0.0011 25.0 1.7 39 131-187 48-87 (98)
95 3ne5_B Cation efflux system pr 22.7 55 0.0019 29.2 3.2 37 131-185 205-241 (413)
96 3it5_A Protease LASA; metallop 22.4 46 0.0016 27.1 2.4 17 166-182 86-102 (182)
97 2wfu_B Probable insulin-like p 20.3 50 0.0017 19.4 1.6 15 27-41 2-16 (26)
No 1
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=100.00 E-value=1e-34 Score=261.32 Aligned_cols=123 Identities=32% Similarity=0.431 Sum_probs=111.1
Q ss_pred cCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027948 92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD 171 (216)
Q Consensus 92 ~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd 171 (216)
-+||.+....+++.|+.||+||+|++||+||..+++.+. ++|++++||+||+||++++.++|+.+|++++++|+++||+
T Consensus 16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~ 94 (300)
T 3l0g_A 16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD 94 (300)
T ss_dssp --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 468888889999999999999999439999998888888 9999999999999999999999999999999999999999
Q ss_pred eeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 172 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 172 ~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
.|++|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 95 ~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~ 138 (300)
T 3l0g_A 95 ITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVD 138 (300)
T ss_dssp EECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999984
No 2
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=5.5e-34 Score=253.90 Aligned_cols=118 Identities=39% Similarity=0.582 Sum_probs=112.7
Q ss_pred CChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecC
Q 027948 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (216)
Q Consensus 97 ~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G 176 (216)
++..++++.|+.||+||+| +||+||.++++.+..+++++++||+||+||++++.++|+.+|++++++|+++||+.|++|
T Consensus 9 ~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g 87 (286)
T 1x1o_A 9 LWQGGLEEALRAWLREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEG 87 (286)
T ss_dssp -CCSSHHHHHHHHHHHHHT-TCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTT
T ss_pred cCcccHHHHHHHHHHhcCC-CCCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCC
Confidence 4556799999999999999 699999988888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 177 ~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++|++++|++++||++||++||||||||||||+|++||.
T Consensus 88 ~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~ 126 (286)
T 1x1o_A 88 TEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVE 126 (286)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=100.00 E-value=6.4e-33 Score=248.13 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=111.7
Q ss_pred CCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeee
Q 027948 95 PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174 (216)
Q Consensus 95 p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~ 174 (216)
+.+|...+++.|+.||+||+| +||+|+. + +++.+++|++++||+||+||++++.++|+.+|++++++|+++||+.|+
T Consensus 12 ~~~~~~~~~~~i~~~L~ED~~-~gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~ 88 (287)
T 3tqv_A 12 NKVPNDIVTRLVRESLAEDIA-TGDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVP 88 (287)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT-TCCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEEC
T ss_pred ccchHHHHHHHHHHHHHhhCC-CCccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEee
Confidence 335667899999999999999 6999984 5 889999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 175 ~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 89 ~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~ 129 (287)
T 3tqv_A 89 ANARIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVK 129 (287)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984
No 4
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=99.97 E-value=6.5e-32 Score=240.78 Aligned_cols=118 Identities=24% Similarity=0.402 Sum_probs=107.7
Q ss_pred CCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCC-eEEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027948 93 KLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKDGD 171 (216)
Q Consensus 93 ~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEd-GVlAGl~~a~~If~~lg~~leve~~v~DGd 171 (216)
---.|.-+..++.|+.||+||+| +||+||.++ .+..++|++++||+ ||+||++++.++|+.+| ++++|+++||+
T Consensus 7 ~~~~~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~dG~ 81 (285)
T 1o4u_A 7 HHHHHHMEKILDLLMSFVKEDEG-KLDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVEDGE 81 (285)
T ss_dssp ------CHHHHHHHHHHHHHHHC-SCCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCTTC
T ss_pred chhhhhhhhhHHHHHHHHHhcCC-CCCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCCCC
Confidence 33456667889999999999999 699999876 78889999999999 99999999999999998 99999999999
Q ss_pred eeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 172 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 172 ~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
.|++|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 82 ~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~ 125 (285)
T 1o4u_A 82 YLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAE 125 (285)
T ss_dssp EEESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999984
No 5
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=99.97 E-value=4.1e-32 Score=241.65 Aligned_cols=114 Identities=26% Similarity=0.413 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhhcCCCC--CcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHH-c-CCCcEEEEEcCCCCeeec
Q 027948 100 YDLKGVVKLALAEDAGDRG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~~G--DlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~-l-g~~leve~~v~DGd~V~~ 175 (216)
..+++.|+.||+||+| +| |+||+++ +.+..++|++++||+||+||++++.++|+. + |++++++|+++||+.|++
T Consensus 8 ~~~~~~i~~~l~ED~~-~g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~~ 85 (284)
T 1qpo_A 8 AAARAAIARGLDEDLR-YGPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPP 85 (284)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECT
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEecC
Confidence 4588999999999999 68 9999988 889999999999999999999999999999 8 888999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus 86 g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~ 125 (284)
T 1qpo_A 86 GEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVD 125 (284)
T ss_dssp TCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
No 6
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=99.97 E-value=5.1e-32 Score=243.38 Aligned_cols=114 Identities=33% Similarity=0.563 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEE
Q 027948 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vI 179 (216)
..+++.|+.||+||+| +||+||.. ++.+.+++|++++||+||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 27 ~~~~~~i~~~L~ED~~-~gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l 104 (298)
T 3gnn_A 27 AAIARNVADALAEDVG-SGDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTV 104 (298)
T ss_dssp HHHHHHHHHHHHHHHH-HC-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEE
T ss_pred HHHHHHHHHHHHhcCC-CCCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEE
Confidence 3688999999999999 69999974 678899999999999999999999999999999889999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 180 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 180 l~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++++|++++||++||++||||||+|||||+|++||.
T Consensus 105 ~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~ 140 (298)
T 3gnn_A 105 CELRGPARALLTAERNALNFLQLLSGVASATRQYVD 140 (298)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984
No 7
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=99.97 E-value=1.5e-31 Score=242.37 Aligned_cols=115 Identities=30% Similarity=0.522 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 027948 100 YDLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~----~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~ 175 (216)
..+++.|+.||+||+|. +||+||. +++++.+++|++++||+||+||++++.++|+.+|++++++|.++||+.|++
T Consensus 44 ~~~~~~i~~~L~ED~~~~~~~~gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~ 122 (320)
T 3paj_A 44 ADITRSVIDTLKEDLGGTLDPAADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTP 122 (320)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECT
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecC
Confidence 36899999999999981 3899998 788899999999999999999999999999999988999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|++|++++|++++||.+||++||||||+|||||+|++||.
T Consensus 123 g~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~ 162 (320)
T 3paj_A 123 NQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQ 162 (320)
T ss_dssp TCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
No 8
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=99.97 E-value=2.3e-30 Score=227.86 Aligned_cols=111 Identities=28% Similarity=0.415 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
++++.|+.||+||+| +||+||. +++.+.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.||++|+
T Consensus 2 ~~~~~i~~~l~eD~~-~gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 77 (273)
T 2b7n_A 2 EIRTFLERALKEDLG-HGDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALM 77 (273)
T ss_dssp TTHHHHHHHHHHHHT-TCCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEE
T ss_pred cHHHHHHHHHHhcCC-CCCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEE
Confidence 368899999999999 6999998 5678899999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|+++++|.+||++||+|||+|||||+|++||.
T Consensus 78 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~ 112 (273)
T 2b7n_A 78 EIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVE 112 (273)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 9
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=99.97 E-value=2.7e-30 Score=230.92 Aligned_cols=114 Identities=32% Similarity=0.571 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhhcCCCC-----CcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHc-CCCcEEEEEcCCCCee
Q 027948 100 YDLKGVVKLALAEDAGDRG-----DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHV 173 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~~G-----DlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~l-g~~leve~~v~DGd~V 173 (216)
+++++.|+.||+||+| .+ |+||.++ +.+..+++++++||+||+||++++.++|+.+ |++++++|+++||+.|
T Consensus 20 ~~~~~~i~~~l~ED~~-g~~~~~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v 97 (296)
T 1qap_A 20 LDIPAAVAQALREDLG-GEVDAGNDITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAI 97 (296)
T ss_dssp HHHHHHHHHHHHHHTT-TSCCGGGCTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCEE
T ss_pred cCHHHHHHHHHHHhCC-CCCCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCEe
Confidence 4589999999999998 33 9999988 8899999999999999999999999999999 8889999999999999
Q ss_pred ecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 174 ~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
.||++|++++|+++++|.+||++||+|||+|||||+|++||.
T Consensus 98 ~~g~~~~~v~G~~~~~l~~Er~aLn~l~~~SgIAT~t~~~v~ 139 (296)
T 1qap_A 98 HANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVG 139 (296)
T ss_dssp CTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999984
No 10
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=99.96 E-value=1.3e-29 Score=226.21 Aligned_cols=110 Identities=29% Similarity=0.431 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEE
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl 180 (216)
.+++.|+.||+||+| +||+||. +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.||++|+
T Consensus 16 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~ 90 (299)
T 2jbm_A 16 TLAALVDSWLREDCP-GLNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVA 90 (299)
T ss_dssp HHHHHHHHHHHHHCS-SCCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEE
T ss_pred hHHHHHHHHHHhhCC-CCCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEE
Confidence 489999999999999 6999998 566 889999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 181 ~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++|+++++|.+||++||+|||+|||||+|++||.
T Consensus 91 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~ 125 (299)
T 2jbm_A 91 EVRGPAHCLLLGERVALNTLARCSGIASAAAAAVE 125 (299)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=99.96 E-value=2.9e-29 Score=223.52 Aligned_cols=110 Identities=31% Similarity=0.523 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecC----
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG---- 176 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G---- 176 (216)
.+++.|+.||+||+| +||+||. +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.+|
T Consensus 12 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 86 (294)
T 3c2e_A 12 AWRQDVTNWLSEDVP-SFDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDS 86 (294)
T ss_dssp HHHHHHHHHHHHHCS-SCCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSS
T ss_pred hHHHHHHHHHHhcCC-CCCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCC
Confidence 489999999999999 6999998 566 889999999999999999999999999998 9999999999999999
Q ss_pred --CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 177 --LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 177 --~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
++|++++|+++++|.+||++||+|||+|||||+|++||.
T Consensus 87 ~~~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~ 127 (294)
T 3c2e_A 87 GKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIIS 127 (294)
T ss_dssp SCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984
No 12
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.76 E-value=2.5e-19 Score=165.37 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCCCccccccc---CCCcEEEEEEEeeC------CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCee
Q 027948 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 173 (216)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~ali---~~~~~~~A~IiAKE------dGVlAGl~~a~~If~~lg~~leve~~v~DGd~V 173 (216)
++.|+.+|.||++ . |.|+.+++ + +.++++++++|+ ++|+||++++.++|+.+ ++++. .++||+.|
T Consensus 15 ~~~I~~~L~tD~Y-~-~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v 88 (395)
T 2i14_A 15 EDEIKAGKTTDVY-F-LRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGI--PVNVY-AMPEGTIF 88 (395)
T ss_dssp HHHHHHTTTSBHH-H-HHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTS--SEEEE-ECCTTCEE
T ss_pred HHHHHHHHHhhch-H-HHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCC--CcEEE-EEcCCCEe
Confidence 4568999999997 3 78877663 5 888999999999 99999999999999954 48886 99999999
Q ss_pred ecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 174 ~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
.+|+++++|+|++.+++.+||++||+|+|+|||||+|++||.
T Consensus 89 ~~ge~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~ 130 (395)
T 2i14_A 89 HPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAALRIKI 130 (395)
T ss_dssp CTTSCSEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999974
No 13
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.76 E-value=3.7e-19 Score=164.48 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCCCccccccc---CCCcEEEEEEEeeC----CeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeec
Q 027948 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 103 ~~~I~~aL~EDig~~GDlTT~ali---~~~~~~~A~IiAKE----dGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~ 175 (216)
++.|+.+|.||++ . |.|+.++. + +.++++++++|+ .+|+||++++.++|+.+ ++++. .++||+.|.+
T Consensus 15 ~~~I~~~L~tD~Y-~-~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v~~ 88 (398)
T 2i1o_A 15 DEDIKKGLASDVY-F-ERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGL--DVDLY-AIPEGTILFP 88 (398)
T ss_dssp HHHHHHTCSSCTH-H-HHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTS--SCEEE-ECCTTCEECS
T ss_pred HHHHHHHHHhhhh-H-HHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhC--CeEEE-EeCCCCEECC
Confidence 4568999999997 3 77877665 5 788999999999 99999999999999955 48886 9999999999
Q ss_pred CC------EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 176 GL------QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 176 G~------vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
|+ ++++|+|++++++.+||++||+|+|+|||||+|++||.
T Consensus 89 g~~~g~~~~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~ 134 (398)
T 2i1o_A 89 RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRL 134 (398)
T ss_dssp BCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999974
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.36 E-value=2.4e-12 Score=122.09 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCCcEEEEEEEeeCC------eEEEcHHHHHHHHHHcCCC---------------------------cEEEEEcCCCCee
Q 027948 127 PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS---------------------------LKVEWSLKDGDHV 173 (216)
Q Consensus 127 ~~~~~~~A~IiAKEd------GVlAGl~~a~~If~~lg~~---------------------------leve~~v~DGd~V 173 (216)
+.+.++...+++|.. +|+||++.+.+.++.+.-. .+ .+.++||+.|
T Consensus 30 ~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~-i~av~EG~~v 108 (494)
T 2f7f_A 30 RADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCT-VRSALEGDLV 108 (494)
T ss_dssp CTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCE-EEECCTTCEE
T ss_pred CCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCce-EEEecCCCcc
Confidence 457789999999985 9999999999999865410 23 3688999999
Q ss_pred ecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 174 ~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
.+|+++++|+|++..++..||++||+|+|+|||||.|++||.
T Consensus 109 ~~g~pll~v~Gp~~~~~~~Et~lLnil~~~S~IAT~a~r~v~ 150 (494)
T 2f7f_A 109 FNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKS 150 (494)
T ss_dssp CTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999974
No 15
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=96.54 E-value=0.00094 Score=62.15 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=65.3
Q ss_pred CcEEEEEEEeeCC----eEEEcHHHHHHHHHHcCC-CcEEEEE--------------c---CCCCee----ecCCEEEEE
Q 027948 129 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDP-SLKVEWS--------------L---KDGDHV----HKGLQFGKV 182 (216)
Q Consensus 129 ~~~~~A~IiAKEd----GVlAGl~~a~~If~~lg~-~leve~~--------------v---~DGd~V----~~G~vIl~I 182 (216)
+.++..+++.|.+ +++||++.+-..++.+.- .-+++++ . =+|+.+ .+|+++++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 4567888888876 788888888777765420 0011111 1 145544 699999999
Q ss_pred EechhhhHHHHHHHHHHHHHH---------------hHHHHHHhhhcc
Q 027948 183 SGRAHSIVIAERVVLNFMQRM---------------SGIATLTRVFVF 215 (216)
Q Consensus 183 ~G~A~~LL~aERvaLNfLqrl---------------SGIAT~Trr~V~ 215 (216)
+|+....-..|-.+||++.++ |.|||++++++.
T Consensus 112 ~Gp~~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~ 159 (407)
T 3os4_A 112 AGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNA 159 (407)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 999999999864
No 16
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=95.70 E-value=0.015 Score=53.79 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=59.7
Q ss_pred CcEEEEEEEeeC--C--eEEEcHHHHHHHHHHc-----------------------------CCCcEEEEEcCCCCeeec
Q 027948 129 DMEVEAHFLAKE--D--GIIAGIALAEMIFHEV-----------------------------DPSLKVEWSLKDGDHVHK 175 (216)
Q Consensus 129 ~~~~~A~IiAKE--d--GVlAGl~~a~~If~~l-----------------------------g~~leve~~v~DGd~V~~ 175 (216)
+.++...++.|. + ++++|++.+-..++.+ ++ ..+++..+||+
T Consensus 36 ~~~~~f~~~~R~~~~~~~~~~GL~~~l~~l~~~~ft~~ei~yL~~~~~f~~~fl~~L~~~rf~~-~~v~I~a~EG~---- 110 (408)
T 1yir_A 36 NAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNP-RYVQTGIENDE---- 110 (408)
T ss_dssp TCEEEEEEEETTCCCCGGGHHHHHHHHHHHHHCCCCHHHHHHHHTSTTSCHHHHHHHHHCCCCG-GGEEEEEETTE----
T ss_pred CCEEEEEEEecCCCCcccHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhcCCCC-ceEEEEcCCCc----
Confidence 556777888887 4 7899999887777532 11 22222226664
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHhhhc
Q 027948 176 GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRVFV 214 (216)
Q Consensus 176 G~vIl~I~G~A~~LL~aERvaLNfLqrl---------------SGIAT~Trr~V 214 (216)
++++|+|+....-..|-.+||++.+. +.|||++++++
T Consensus 111 --~~l~i~Gp~~~~~llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~ 162 (408)
T 1yir_A 111 --FFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLR 162 (408)
T ss_dssp --EEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHH
T ss_pred --EEEEEEecHHHHHHHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHH
Confidence 78999999988888999999999996 89999998865
No 17
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=95.57 E-value=0.015 Score=55.15 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEechhh----hHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHS----IVIAERVVLNFMQRMSGIATLTRVFVF 215 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~A~~----LL~aERvaLNfLqrlSGIAT~Trr~V~ 215 (216)
+++. .++||+.|-+++++++|+|+... --..|-.+|| |.|.|.|||.++++++
T Consensus 114 ~~I~-A~pEGt~v~~~~Pll~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~ 170 (484)
T 3dhf_A 114 IEIK-AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKK 170 (484)
T ss_dssp EEEE-ECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHH
T ss_pred eEEE-EECCCccccCCCcEEEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5665 57999999999999999999883 3677999999 9999999999999863
No 18
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=94.64 E-value=0.018 Score=53.93 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=42.4
Q ss_pred EcCC-CCeeecCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHhhhc
Q 027948 166 SLKD-GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRVFV 214 (216)
Q Consensus 166 ~v~D-Gd~V~~G~vIl~I~G~A~~LL~aERvaLNfLq---rl------------SGIAT~Trr~V 214 (216)
.++| |+.|. |+++++|+|+-...-..|-.+||++. +. +.|||.+++++
T Consensus 117 a~~EgGt~v~-~ep~l~IeGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~ 180 (441)
T 1vlp_A 117 SEEIEGKPTH-YKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF 180 (441)
T ss_dssp EEEETTEEEE-EEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH
T ss_pred EecCCCceEC-CEEEEEEEEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc
Confidence 4577 89999 99999999998888888999999999 65 99999999864
No 19
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=93.85 E-value=0.094 Score=48.33 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=57.5
Q ss_pred CcEEEEEEEeeCC----e-EEEcHHHHHHHHHH------------------------------cCC-CcEEEEEcCCCCe
Q 027948 129 DMEVEAHFLAKED----G-IIAGIALAEMIFHE------------------------------VDP-SLKVEWSLKDGDH 172 (216)
Q Consensus 129 ~~~~~A~IiAKEd----G-VlAGl~~a~~If~~------------------------------lg~-~leve~~v~DGd~ 172 (216)
+.++...++.|.+ + |++|++.+-..++. +++ .+++ +.++||
T Consensus 27 ~~~v~f~~~~R~~~~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~~f~~~fl~~L~~~r~~~~~v~I-~a~~EG-- 103 (394)
T 2im5_A 27 RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTV-SIDAQG-- 103 (394)
T ss_dssp TCEEEEEEEETTCCCCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHHCCCCGGGEEE-EECTTS--
T ss_pred CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEE-EEcCCC--
Confidence 5678888888874 4 78998876665431 111 1233 233555
Q ss_pred eecCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHhhh
Q 027948 173 VHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRVF 213 (216)
Q Consensus 173 V~~G~vIl~I~G~A~~LL~aERvaLNfLq---rl------------SGIAT~Trr~ 213 (216)
+++++|+|+-...-..|-.+||++. |. +.|||+++++
T Consensus 104 ----ep~l~I~Gp~~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~ 155 (394)
T 2im5_A 104 ----HLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM 155 (394)
T ss_dssp ----CEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ----cEEEEEEecHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH
Confidence 6999999999888888999999999 66 9999999885
No 20
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=92.89 E-value=0.034 Score=52.39 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=62.3
Q ss_pred CcEEEEEEEeeCC----eEEEcHHHHHHHHHHc-------------CC-----------Cc----EEEEEcCCCCeeecC
Q 027948 129 DMEVEAHFLAKED----GIIAGIALAEMIFHEV-------------DP-----------SL----KVEWSLKDGDHVHKG 176 (216)
Q Consensus 129 ~~~~~A~IiAKEd----GVlAGl~~a~~If~~l-------------g~-----------~l----eve~~v~DGd~V~~G 176 (216)
+.++...++.|.. +.+||++.+-..++.+ ++ +. .-.+.+++|..+.+|
T Consensus 36 ~~~v~fe~f~R~~p~~~~~~agL~~~l~~L~~l~ft~eei~yL~~~~~~~~~~fl~yL~~frf~~~~~~av~eg~~~~~~ 115 (446)
T 4hl7_A 36 DVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEMGIVKQGGKQ 115 (446)
T ss_dssp TCEEEEEEEEESCTTTHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHTTCCCCHHHHEEEEEECC----
T ss_pred CCeEEEEEEECCCCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCCHHHHHHHHhCCCCCeEEEEEeccccCcCC
Confidence 4567788888865 5678877776655521 10 00 103456788888999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHH------hHHH---------HHHhhhcc
Q 027948 177 LQFGKVSGRAHSIVIAERVVLNFMQRM------SGIA---------TLTRVFVF 215 (216)
Q Consensus 177 ~vIl~I~G~A~~LL~aERvaLNfLqrl------SGIA---------T~Trr~V~ 215 (216)
+++++|+|+....-..|-.+||++.+. |.|| |+++|++.
T Consensus 116 ep~l~VeGp~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~ 169 (446)
T 4hl7_A 116 QLRISIRGSWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKA 169 (446)
T ss_dssp EEEEEEEEEHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 8997 78888763
No 21
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=88.91 E-value=0.31 Score=34.80 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.+|++++||.|++||++++++..
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECC
Confidence 3478999999999999999999853
No 22
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=88.59 E-value=0.36 Score=32.51 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+|++++|+.|++||.+++++-.
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 47899999999999999999854
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=88.39 E-value=0.33 Score=33.75 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.5
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+|++++||.|++||++++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 57889999999999999999854
No 24
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.58 E-value=0.39 Score=35.52 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.+|++++||.|++||+|++++-.
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 3478999999999999999999853
No 25
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=87.39 E-value=0.47 Score=31.90 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.6
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+|++++|+.|++||.+++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5789999999999999999853
No 26
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=86.67 E-value=0.41 Score=33.12 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.+|++++|+.|++||++++++..
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcC
Confidence 3467899999999999999999864
No 27
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=85.50 E-value=0.41 Score=34.94 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEec
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.-.+|++++||.|++||+|++++..
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECS
T ss_pred EEEEEEcCCcCEECCCCEEEEEEcC
Confidence 4578999999999999999999753
No 28
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=85.37 E-value=0.46 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-++|++++||.|++||+|++++-.
T Consensus 24 v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 24 IARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEcCCCCEecCCCEEEEEEcC
Confidence 478899999999999999999753
No 29
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=85.31 E-value=0.35 Score=33.59 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-.+|++++||.|++||++++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 18 VATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp ECCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcc
Confidence 357889999999999999999753
No 30
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.86 E-value=5.6 Score=37.09 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=45.7
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC-----------CCcEEEEEcCCCCeeecCCEEEEEEechhh
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg-----------~~leve~~v~DGd~V~~G~vIl~I~G~A~~ 188 (216)
..+ +..+.|.++|++..++--. .+...+| +..-++.+++=||+|++||++++|+.+-..
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~ 395 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRRG 395 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCcc
Confidence 345 8899999999998765322 2233333 467799999999999999999999998663
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=84.82 E-value=0.76 Score=31.34 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.6
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+|++++|+.|++||+|++++..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEET
T ss_pred EEEcCCcCEEcCCCEEEEEEcc
Confidence 5788999999999999999853
No 32
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.65 E-value=0.6 Score=34.19 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=26.7
Q ss_pred EEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 134 AHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 134 A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
..+.++.+|.+. +|++++|+.|++||++++++-
T Consensus 18 ~~v~a~~~G~v~------------------~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 18 TVLRSPSAGKLT------------------QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp TEEECSSCEEEE------------------EESSCTTEEECTTCEEEEEEE
T ss_pred cEEeCCCCEEEE------------------EEEcCCcCEECCCCEEEEEEe
Confidence 357777777543 678999999999999999984
No 33
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=84.31 E-value=0.41 Score=33.22 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+|++++|+.|++||.+++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 5789999999999999999864
No 34
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=84.12 E-value=0.49 Score=32.89 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-.+|++++||.|++||.+++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 467899999999999999999864
No 35
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=84.03 E-value=0.68 Score=32.90 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-.+|++++|+.|++||+|++++.
T Consensus 16 v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 16 LTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EEEESSCTTEEECTTCEEEEEEC
T ss_pred EEEEECCCCCEECCCCEEEEEEe
Confidence 35789999999999999999973
No 36
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=83.41 E-value=2.5 Score=39.56 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=36.2
Q ss_pred ecCCEEEEEEechhhhHHHHHHHHHHHHHH----------------------hHHHHHHhhh
Q 027948 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRM----------------------SGIATLTRVF 213 (216)
Q Consensus 174 ~~G~vIl~I~G~A~~LL~aERvaLNfLqrl----------------------SGIAT~Trr~ 213 (216)
..|+++++|+|+-...-..|-.+||++.+. +.|||.++++
T Consensus 129 ~EGep~l~I~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~ 190 (449)
T 1ybe_A 129 RDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERL 190 (449)
T ss_dssp CSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHH
Confidence 445899999999988888899999999999 9999999886
No 37
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=82.86 E-value=0.37 Score=33.19 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-.+|++++|+.|++||++++++-.
T Consensus 18 v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 18 IVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEcc
Confidence 367889999999999999999754
No 38
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=82.75 E-value=0.89 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.-++|+++.||.|++||+|++++-
T Consensus 43 ~V~~~~V~~Gd~V~~Gd~L~~iEa 66 (128)
T 1y8o_B 43 TVQRWEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp EEEEECSCTTCEECTTCEEEEEEC
T ss_pred EEEEEecCCCCEecCCCEEEEEEc
Confidence 347889999999999999999874
No 39
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=82.50 E-value=5.5 Score=37.16 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=46.8
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC-----------CCcEEEEEcCCCCeeecCCEEEEEEechhhh
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 189 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg-----------~~leve~~v~DGd~V~~G~vIl~I~G~A~~L 189 (216)
..+.+..+.|.++|++..++--. .+...+| +..-++.+++=||+|++||++++|+.+-..+
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~ 404 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPDV 404 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSSCC
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCccH
Confidence 34578899999999998865322 2233333 4677999999999999999999999986633
No 40
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=82.14 E-value=0.92 Score=33.19 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.1
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 027948 164 EWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G 184 (216)
+|++++|+.|++||+|++++-
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp EECCCTTEEECSSCEEEEEES
T ss_pred EEECCCCCEECCCCEEEEEEc
Confidence 578999999999999999974
No 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=82.13 E-value=0.97 Score=33.36 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++++++|+.|++|++|+++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999986
No 42
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=79.83 E-value=0.79 Score=33.30 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.+|.+++|+.|++||++++++..
T Consensus 37 ~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 37 VAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EEECCCTTCCCCTTCCCEEEEC-
T ss_pred EEEECCCCCEEcCCCEEEEEecc
Confidence 36789999999999999999864
No 43
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=79.53 E-value=7.2 Score=36.51 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=45.3
Q ss_pred CcEEEEEEEeeCCeEEEcHHH--HHHHHHHc-----------CCCcEEEEEcCCCCeeecCCEEEEEEechh
Q 027948 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGRAH 187 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~--a~~If~~l-----------g~~leve~~v~DGd~V~~G~vIl~I~G~A~ 187 (216)
..+.+..+.|.++|++..++- +-.+...+ |+..-++++++=||+|++||++++|+ +-.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~-~~~ 404 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH-SNR 404 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE-ESS
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe-CCh
Confidence 345788999999999998764 23444444 34678999999999999999999999 443
No 44
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=75.13 E-value=0.34 Score=33.91 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEEec
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
-.+|++++||.|++||++++++..
T Consensus 19 v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 19 VATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEEECCCcCEECCCCEEEEEEcc
Confidence 367899999999999999998743
No 45
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=72.56 E-value=5.6 Score=37.18 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=47.3
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH--HHHHHcC-----------CCcEEEEEcCCCCeeecCCEEEEEEechhhhH
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE--MIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 190 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~--~If~~lg-----------~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL 190 (216)
..+.+..+.|.++|++..++--. .+...+| +..-++.+++=||+|++||++++|+.+-...+
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~~ 410 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNW 410 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSHHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCHhhH
Confidence 34578889999999998765322 2233333 46779999999999999999999999876443
No 46
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=70.91 E-value=19 Score=34.03 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=45.5
Q ss_pred CcEEEEEEEeeCCeEEEcHHHHH-----HHH------HHcCCCcEEEEEcCCCCeeecCCEEEEEEechhh
Q 027948 129 DMEVEAHFLAKEDGIIAGIALAE-----MIF------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (216)
Q Consensus 129 ~~~~~A~IiAKEdGVlAGl~~a~-----~If------~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~ 188 (216)
..+.+..+.|.++|++..++--. ..+ ...|+..-++.+++=||+|++||++++|+.+-..
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~~ 438 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPA 438 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCChh
Confidence 34577889999999998765322 222 2234567899999999999999999999988663
No 47
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=65.78 E-value=0.66 Score=32.84 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.1
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
.+|++++|+.|++||++++++-
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~ 35 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEG 35 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSC
T ss_pred EEEEcCCCCEEcCCCEEEEEEc
Confidence 4578889999999999888764
No 48
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=64.48 E-value=1.4 Score=37.66 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=0.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-++|++++||.|++||+|++++-
T Consensus 20 I~~w~vk~Gd~V~~Gd~L~~iEt 42 (229)
T 1zy8_K 20 IVKWLKKEGEAVSAGDALCEIET 42 (229)
T ss_dssp -----------------------
T ss_pred EEEEecCCCCEeCCCCEEEEEec
Confidence 47888999999999999888863
No 49
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=63.48 E-value=13 Score=24.47 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=25.9
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
....+.|..+|++ .+..+++|+.+.+|+.+++++
T Consensus 41 ~~~~i~ap~~G~v------------------~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 41 MENEIPSPRDGVV------------------KRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEEEECSSSEEE------------------EEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEeCCCCEEE------------------EEEEcCCcCEECCCCEEEEEC
Confidence 4567778888776 224577899999999999874
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=62.25 E-value=4.4 Score=34.58 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++++++|+.|++||+|+++.-+-
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~~ 66 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPEQ 66 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCHH
T ss_pred EEEeCCCCEECCCCEEEEEChHH
Confidence 56789999999999999998763
No 51
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=62.14 E-value=2.7 Score=34.87 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++++++|+.|++||+|+++.-+-
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCHH
T ss_pred EEEcCCCCEecCCCEEEEECcHH
Confidence 45789999999999999998763
No 52
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=59.45 E-value=15 Score=24.62 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=25.9
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
....+.|..+|++. +..+++|+.|.+|+.|++++
T Consensus 44 ~~~~i~Ap~~G~v~------------------~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 44 METEINAPTDGKVE------------------KVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp EEEEEECSSSEEEE------------------EECCCTTCBCCBTSEEEEEC
T ss_pred eeEEEECCCCEEEE------------------EEecCCcCEECCCCEEEEEC
Confidence 35667777777665 24577899999999999874
No 53
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=59.19 E-value=2 Score=39.75 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=0.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
=++|++++||.|++||+|++++-
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~vEt 41 (428)
T 3dva_I 19 IVKWFVKPGDEVNEDDVLCEVQN 41 (428)
T ss_dssp -----------------------
T ss_pred EEEEEcCCCCEECCCCEEEEEEe
Confidence 37888999999999998888773
No 54
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=58.67 E-value=12 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.9
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++++++|+.|++|++|+++.-+
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 5578999999999999999976
No 55
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=58.48 E-value=6.3 Score=33.09 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.++++||+|++||.|+++-
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred cceEEEeCcCEEcCCCEEEEEC
Confidence 4778999999999999999874
No 56
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=56.82 E-value=7.2 Score=31.48 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.+++.||+|++||.|+++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 4677899999999999999883
No 57
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=53.28 E-value=8.9 Score=31.25 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.+++.||+|++||.|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 4677899999999999999883
No 58
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=52.20 E-value=11 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.9
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEE
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~ 183 (216)
....+.|+.+|++.. ..+++|+.|.+|+.|++++
T Consensus 47 ~~~~i~Ap~~G~v~~------------------~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 47 MMNQIEADKSGTVKA------------------ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEEECSSCEEEEE------------------ECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECCCCEEEEE------------------EEcCCCCEECCCCEEEEEC
Confidence 456777777775432 4578999999999999874
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=51.81 E-value=9.1 Score=37.08 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCeeecCCEEEEEEe
Q 027948 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 161 leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.-++|++++||.|++||+|++++-
T Consensus 622 ~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 622 LIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEcCCCEEEEEEe
Confidence 346899999999999999999984
No 60
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=51.30 E-value=17 Score=32.54 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.4
Q ss_pred EEc-CCCCeeecCCEEEEEEec
Q 027948 165 WSL-KDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 165 ~~v-~DGd~V~~G~vIl~I~G~ 185 (216)
+++ ++||.|++||+|+++.-+
T Consensus 135 v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 135 VYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECSCCTTCEECTTCEEEEEECC
T ss_pred EEeCCCCCEEcCCCEEEEEcCH
Confidence 456 899999999999999954
No 61
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=50.18 E-value=6.7 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
++++++|++|++||+|+++.-+.
T Consensus 56 ~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 56 KRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp ECCSCSSEEECTTSEEEEECCHH
T ss_pred EEEcCCCCEEcCCCEEEEECcHH
Confidence 34789999999999999998653
No 62
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=49.48 E-value=15 Score=24.83 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=17.2
Q ss_pred EEEcCCCCeeecCCEEEEEE
Q 027948 164 EWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~ 183 (216)
+..+++|+.|.+|+.+++++
T Consensus 57 ~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 57 KILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EECCCTTCEECSCSEEEEEE
T ss_pred EEEeCCcCEECCCCEEEEEE
Confidence 35778999999999999875
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.18 E-value=4.8 Score=34.63 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEcCCCCeeecCCEEEEEEech
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~A 186 (216)
.++++++|++|++||+|+++.-+.
T Consensus 44 ~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 44 TKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp CEECCCTTSCCCSSCCCEECCCHH
T ss_pred EEEEECCCCEECCCCEEEEEcCHH
Confidence 356899999999999999998764
No 64
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=48.55 E-value=12 Score=24.77 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
....+.|+.+|++.- ..+++|+.|.+|+.++++..+
T Consensus 35 ~~~~i~ap~~G~v~~------------------~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 35 MEIPIVADRSGIVKE------------------VKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp EEEEEECSSCEEEEE------------------ESSCTTCEECTTCEEEEEGGG
T ss_pred cEEEEECCCCcEEEE------------------EecCCCCEECCCCEEEEEeCC
Confidence 456677777776543 367899999999999998643
No 65
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=48.42 E-value=8.3 Score=31.43 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEcCCCCeeecCCEEEEEE
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~ 183 (216)
-++.+++.||+|++||.|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 4677899999999999999884
No 66
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=44.61 E-value=80 Score=22.25 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 027948 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205 (216)
Q Consensus 148 ~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSG 205 (216)
..+.++-+..+ +++++.-. .-...+.+++|.|+.+++..|.+.+.+++...||
T Consensus 34 ~~Ik~I~~~tg--a~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 34 QRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp HHHHHHHHHTC--CEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred HhHHHHHHHhC--CeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 56777777776 56654321 1123478999999999999999999999988776
No 67
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=44.59 E-value=21 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+..++.|+.|.+|+.|+++...
T Consensus 54 ~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 54 SVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EESCCTTCEEETTSEEEEEECC
T ss_pred EEEeCCCCEECCCCEEEEEecC
Confidence 3567899999999999999754
No 68
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=43.10 E-value=17 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.0
Q ss_pred EEEcCCCCeeecCCEEEEEEe
Q 027948 164 EWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G 184 (216)
++.+++|+.|.+|+.|+++..
T Consensus 57 ~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 57 EIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EESSCTTCEECTTCEEEEECC
T ss_pred EEEcCCcCEECCCCEEEEEec
Confidence 357789999999999999864
No 69
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=42.97 E-value=14 Score=38.20 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=21.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-++|++++||.|++||+|++++.
T Consensus 1088 v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1088 VTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEEECCCTTCEECTTCEEEEEES
T ss_pred EEEEEeCCCCEECCCCEEEEEEe
Confidence 37899999999999999999984
No 70
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=42.45 E-value=13 Score=30.70 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.3
Q ss_pred EEEEcCCCCeeecCCEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I 182 (216)
...+++||+.|++|++|++.
T Consensus 62 a~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC
T ss_pred CEEEecCCCEEcCCCEEEEE
Confidence 34589999999999999984
No 71
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=41.10 E-value=15 Score=38.43 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.4
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
++|++++||.|++||+|++++-
T Consensus 1179 ~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1179 WKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEESSCTTCEECSSCEEEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEe
Confidence 5799999999999999999985
No 72
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=40.67 E-value=16 Score=30.19 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEEEcCCCCeeecCCEEEEEE
Q 027948 163 VEWSLKDGDHVHKGLQFGKVS 183 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~ 183 (216)
....+.||+.|++|++|+++-
T Consensus 166 a~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 166 AIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CEESSCTTCEECTTCEEEEEE
T ss_pred CEEEEcCCCEEcCCCEEEEcc
Confidence 455789999999999999985
No 73
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=39.02 E-value=94 Score=21.46 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 027948 147 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205 (216)
Q Consensus 147 l~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSG 205 (216)
=..+.++-+..+ +++++.-. .-...+..++|.|+.+++..|.+.+.+++...+|
T Consensus 26 G~~Ik~I~~~tg--a~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 26 GQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp GHHHHHHHHHHC--CEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHC--CEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 357778888877 56554321 1123467999999999999999999999988775
No 74
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=36.76 E-value=53 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCeEEEcH-HHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 140 EDGIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 140 EdGVlAGl-~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
.+-+.-|+ +++... +|.-..+++ .+.|+.|++|++++.|+.
T Consensus 29 ~~~~~vGit~~a~~~---lG~i~~V~l-p~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 29 DKVATVGITNHAQEQ---LGDVVYVDL-PEVGREVKKGEVVASIES 70 (136)
T ss_dssp TTEEEEEECHHHHHH---HCSEEEEEC-CCTTCEECTTCEEEEEEE
T ss_pred CCEEEEeeEhhhccc---CCCcEEEEe-cCCCCEEeCCCEEEEEEE
Confidence 34566774 554443 443123332 499999999999999984
No 75
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=36.03 E-value=19 Score=30.44 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEEcCCCCeeecCCEEEE
Q 027948 164 EWSLKDGDHVHKGLQFGK 181 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~ 181 (216)
..+++||+.|++|++|++
T Consensus 22 ~L~V~dG~~VkkG~~lae 39 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAE 39 (193)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEECCCCEEcCCCEEEE
Confidence 458899999999999998
No 76
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=36.01 E-value=30 Score=24.77 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.3
Q ss_pred EEEcCCCCeeecCCEEEEEEech
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~A 186 (216)
+..+++|+.|.+|+.|++++...
T Consensus 60 ~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 60 KLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EECCCSSCEECTTSEEEEEECSC
T ss_pred EEEcCCCCEeCCCCEEEEEecCC
Confidence 35788999999999999998543
No 77
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=35.67 E-value=26 Score=24.33 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.4
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 131 ~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+....+.|..+|++ .+..++.|+.|.+|+.|+++...
T Consensus 37 k~~~~i~Ap~~G~V------------------~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVV------------------KELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCC------------------CEECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEE------------------EEEEeCCCCEECCCCEEEEEEcC
Confidence 45677888877743 23467899999999999999754
No 78
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=35.63 E-value=26 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.1
Q ss_pred EEEcCCCC-eeecCCEEEEEEech
Q 027948 164 EWSLKDGD-HVHKGLQFGKVSGRA 186 (216)
Q Consensus 164 e~~v~DGd-~V~~G~vIl~I~G~A 186 (216)
++++++|+ .|.+|+.|+++.-..
T Consensus 61 ~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 61 KILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EESSCTTCCCEETTCEEEEEESSS
T ss_pred EEEECCCCeEECCCCEEEEEEccc
Confidence 35788999 899999999997543
No 79
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=35.45 E-value=1.1e+02 Score=21.80 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHH
Q 027948 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 201 (216)
Q Consensus 148 ~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLq 201 (216)
..+.+|-+..+ +++.+. ++|......+.+++|.|+..++..|-+.+..++.
T Consensus 35 ~~Ik~I~~~tg--a~I~I~-~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 35 ETIKQLQERAG--VKMVMI-QDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp SHHHHHHHHHT--SEEEEC-CSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--CeEEec-CCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 34566667766 666533 4554334468899999999999999998888764
No 80
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=35.01 E-value=1.4e+02 Score=22.11 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHH
Q 027948 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 202 (216)
Q Consensus 148 ~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqr 202 (216)
..+.+|-+..+ +++++.-.++ ...+.+++|+|+.+++..|.+.+..++..
T Consensus 31 ~~Ik~I~~~TG--akI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 31 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHT--CEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 56777777776 6776544333 23477999999999999999999988764
No 81
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=34.90 E-value=8.1 Score=37.39 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCCeeecCCEEEEEEe
Q 027948 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 160 ~leve~~v~DGd~V~~G~vIl~I~G 184 (216)
+.-++|++++||.|++||+|++++-
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp -------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3457899999999999999999873
No 82
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=33.89 E-value=69 Score=27.94 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=41.6
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCc-EEEEEcCCCCeeec----CCEEEEEEechhhhHHHHHHHHHHHHH
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSL-KVEWSLKDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQR 202 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~l-eve~~v~DGd~V~~----G~vIl~I~G~A~~LL~aERvaLNfLqr 202 (216)
+...+.+..+|++..++-.+++.+. +++ .+.++.+.|+.+.+ ++.++.+.....+.-.+++.+..+.+.
T Consensus 337 ~~~~~~~~~~G~~~~i~g~~~~~~~--p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~ 410 (425)
T 3vot_A 337 GNYIIPVQGSGTFEKIDGLEEVKQR--QEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDE 410 (425)
T ss_dssp EEEECCCCSCEEEEEEETHHHHHTC--TTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCeEEEecCCHHHHhcC--CCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCc
Confidence 3344556678987665555555442 344 68889999999975 444544444444555566666555543
No 83
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=33.51 E-value=17 Score=35.94 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-++|.+++||.|++||++++++.
T Consensus 660 V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 660 VIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEECSCTTCCBCTTCCCEEEES
T ss_pred EEEEEeCCCCeeCCCCEEEEEec
Confidence 46899999999999999999984
No 84
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=31.07 E-value=1.3e+02 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHH
Q 027948 147 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 203 (216)
Q Consensus 147 l~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrl 203 (216)
=..+.++-+..+ +++.+ -+||..-..++..+++.|+..++..|.+.+..+++..
T Consensus 104 G~~I~~i~~~tg--a~I~i-~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 104 GKTVNELQNLTA--AEVVV-PRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp GHHHHHHHHHHC--CEEEC-CTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhC--CeEEE-CCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 356777877777 66653 3455444445569999999999999999999988753
No 85
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=30.95 E-value=31 Score=30.41 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=19.3
Q ss_pred EEEEcCCCCeeecCCEEEEEEec
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
++..+++|+.|++||+|+++.-+
T Consensus 278 ~~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp EEESCCTTCEECTTSEEEEEECT
T ss_pred EEEeCCCCCEeCCCCEEEEEECC
Confidence 55567899999999999999843
No 86
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=28.08 E-value=37 Score=29.78 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEEcCCCCeeecCCEEEEEEec
Q 027948 164 EWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 164 e~~v~DGd~V~~G~vIl~I~G~ 185 (216)
+..++-|+.|++||+|++|.-+
T Consensus 269 ~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 269 EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp EESSCTTCEECTTCEEEEEECS
T ss_pred EEcCCCCCEEcCCCEEEEEEcC
Confidence 3456789999999999999854
No 87
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=28.04 E-value=29 Score=35.94 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=17.9
Q ss_pred EEEEEcCCCCeeecCCEEEEEEe
Q 027948 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 162 eve~~v~DGd~V~~G~vIl~I~G 184 (216)
-++|.+++||.|++||+|++++.
T Consensus 1106 v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1106 ISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp EEEECCSSCCCC---CEEEEEEC
T ss_pred EEEEEcCCcCEeCCCCEEEEEEc
Confidence 46899999999999999999974
No 88
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.07 E-value=94 Score=26.49 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccc--------CCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCe
Q 027948 101 DLKGVVKLALAEDAGDRGDVTCMATI--------PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 172 (216)
Q Consensus 101 ~i~~~I~~aL~EDig~~GDlTT~ali--------~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~ 172 (216)
.+++.|+.+++|=--+..|+..+.+- .+.+.+...+..+++-.=...++++.+|+.+|-..+++..+.++
T Consensus 13 TveeAi~~Al~~L~v~~d~l~~eVleeg~kGffGiG~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~~~~~~-- 90 (225)
T 3gku_A 13 TVEEAVTKALIELQTTSDKLTYEIVEKGSAGFLGIGSKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISVEYNET-- 90 (225)
T ss_dssp SHHHHHHHHHHHHTCCGGGEEEEEEECCBCCC--CCCBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEEEEETT--
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEEEecCCCccccccCceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEEEEecC--
Confidence 47788888877621111244433221 12344555665565533335678899999998656665533321
Q ss_pred eecCCEEEEEEechhhhHHHHH-HHHHHHHHHhHHHH
Q 027948 173 VHKGLQFGKVSGRAHSIVIAER-VVLNFMQRMSGIAT 208 (216)
Q Consensus 173 V~~G~vIl~I~G~A~~LL~aER-vaLNfLqrlSGIAT 208 (216)
.+.+.+.+.|+--.+|.+-+ -.|+-||++.-.+-
T Consensus 91 --~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 91 --EKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp --TTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 14578889998878887766 57888898877554
No 89
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=25.85 E-value=1.5e+02 Score=21.70 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCe-eecCCEEEEEEechhhhHHHHHHHHHHHH
Q 027948 148 ALAEMIFHEVDPSLKVEWSLKDGDH-VHKGLQFGKVSGRAHSIVIAERVVLNFMQ 201 (216)
Q Consensus 148 ~~a~~If~~lg~~leve~~v~DGd~-V~~G~vIl~I~G~A~~LL~aERvaLNfLq 201 (216)
..+.+|-+..+ +++++.-. .+. -...+.+++|.|+.+++-.|.+.+.+++.
T Consensus 27 ~~Ik~I~~~TG--a~I~I~~~-~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 27 ENVKAINQQTG--AFVEISRQ-LPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CHHHHHHHHSS--SEEEECCC-CCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhC--CEEEEcCc-cCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 45777777776 66655332 111 12356899999999999999988887754
No 90
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=25.14 E-value=35 Score=30.88 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEE
Q 027948 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (216)
Q Consensus 100 ~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vI 179 (216)
+.+.+.|++.++ -.| ..|+-.+.++|.. - .+-.|..+ -. ..+. .-...+++||+.|++|++|
T Consensus 16 ~kv~~~l~~~~~-~~~-~~~~~~~~~vp~e--~--~~~~~~~~-~~---------~~vp--yga~l~v~~g~~V~~g~~l 77 (352)
T 2xhc_A 16 EKVKENIEKKVE-ATG-IKNLVGRIVIPEE--V--VLDATSPS-ER---------LILS--PKAKLHVNNGKDVNKGDLI 77 (352)
T ss_dssp HHHHHHHHHHHH-HHC-CCSSEEEEECCEE--E--EECCSSCS-EE---------EEEC--TTCEESCCTTCEECTTCEE
T ss_pred HHHHHHHHHHHH-hcc-hhhhccEEEeeeE--E--EEEEecCc-eE---------EEcC--CCCEEEecCCCEEcCCCEE
Confidence 445566655553 234 4577766555422 2 22233222 11 1122 2244589999999999999
Q ss_pred EE
Q 027948 180 GK 181 (216)
Q Consensus 180 l~ 181 (216)
++
T Consensus 78 a~ 79 (352)
T 2xhc_A 78 AE 79 (352)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 91
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=24.56 E-value=49 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC-eeecCCEEEEEEechhhh
Q 027948 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD-HVHKGLQFGKVSGRAHSI 189 (216)
Q Consensus 132 ~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd-~V~~G~vIl~I~G~A~~L 189 (216)
....+.|..+|++. +.++++|+ .|..|+.|+++.-....+
T Consensus 49 ~~~~i~Ap~~G~V~------------------~i~v~~G~~~V~~G~~l~~i~~~~~~~ 89 (108)
T 2dne_A 49 ATVGFESLEECYMA------------------KILVAEGTRDVPIGAIICITVGKPEDI 89 (108)
T ss_dssp CEEEEECSSSEEEE------------------ECSSCTTCCSEETTCEEEEEESCHHHH
T ss_pred ceeEEeCCCCEEEE------------------EEEeCCCCeeecCCCEEEEEecCccch
Confidence 45566666666542 34678999 899999999998765443
No 92
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=24.48 E-value=66 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.1
Q ss_pred EEEcCCCC-eeecCCEEEEEEechhhh
Q 027948 164 EWSLKDGD-HVHKGLQFGKVSGRAHSI 189 (216)
Q Consensus 164 e~~v~DGd-~V~~G~vIl~I~G~A~~L 189 (216)
++++++|+ .|..|++|+++.-....+
T Consensus 83 ~i~v~~Gd~~V~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 83 KILVPEGTRDVPLGTPLCIIVEKEADI 109 (128)
T ss_dssp EESSCTTCCSEETTCEEEEEESSGGGG
T ss_pred EEEeCCCCeeecCCCEEEEEecCccch
Confidence 35788998 899999999998765443
No 93
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=24.46 E-value=45 Score=29.83 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=18.7
Q ss_pred EEEEcCCCCeeecCCEEEEEEe
Q 027948 163 VEWSLKDGDHVHKGLQFGKVSG 184 (216)
Q Consensus 163 ve~~v~DGd~V~~G~vIl~I~G 184 (216)
++..++-|+.|++||+|++|.-
T Consensus 301 ~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 301 VEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSCTTCCBCTTCEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEc
Confidence 3456789999999999999986
No 94
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.43 E-value=32 Score=24.96 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=28.4
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCee-ecCCEEEEEEechh
Q 027948 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV-HKGLQFGKVSGRAH 187 (216)
Q Consensus 131 ~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V-~~G~vIl~I~G~A~ 187 (216)
+....+.|..+|++. ++++++|+.| .+|+.|+++.-...
T Consensus 48 K~~~~i~Ap~~G~v~------------------~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 48 KAVVTLDASDDGILA------------------KIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp SCEEEEECSSCEEEE------------------ECSSCTTCCCEESSCEEEEEECTTS
T ss_pred cceeEEeCCCCEEEE------------------EEEeCCCCEEcCCCCEEEEEecCCC
Confidence 345667777776542 3467899998 99999999986543
No 95
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=22.73 E-value=55 Score=29.16 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.0
Q ss_pred EEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCCeeecCCEEEEEEec
Q 027948 131 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (216)
Q Consensus 131 ~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd~V~~G~vIl~I~G~ 185 (216)
.....|.|..+|++. +..+..|+.|.+|+.|++|...
T Consensus 205 ~~~~~I~AP~~G~V~------------------~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 205 QTRFTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp CCEEEEECSSSEEEE------------------ECCCCTTCEECTTSCSEEEEEE
T ss_pred cccEEEEcCCCeEEE------------------EEEcCCCCEECCCCcEEEEeCC
Confidence 356789999999986 2357799999999999998743
No 96
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=22.41 E-value=46 Score=27.11 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred EcCCCCeeecCCEEEEE
Q 027948 166 SLKDGDHVHKGLQFGKV 182 (216)
Q Consensus 166 ~v~DGd~V~~G~vIl~I 182 (216)
.++.||+|++||+|..+
T Consensus 86 ~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CCCTTCEECTTCEEEEE
T ss_pred ccCCCCEEcCCCEEEee
Confidence 57899999999999987
No 97
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=20.30 E-value=50 Score=19.45 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.7
Q ss_pred cCCchhHHHHHHHHH
Q 027948 27 SSHSCGQVIIEALLS 41 (216)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (216)
|.|-||.-+.|||-.
T Consensus 2 ~~~lCG~~L~eaL~~ 16 (26)
T 2wfu_B 2 SLRACGPALMDMLRV 16 (26)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHH
Confidence 568999999999864
Done!