Query 027949
Match_columns 216
No_of_seqs 149 out of 1806
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-40 2.2E-45 238.0 20.9 188 9-197 3-193 (205)
2 KOG0078 GTP-binding protein SE 100.0 3.4E-38 7.4E-43 228.2 21.7 180 11-191 8-187 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.1E-38 4.7E-43 225.3 19.5 196 13-215 3-200 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.9E-37 6.4E-42 219.6 19.1 176 13-189 20-196 (221)
5 KOG0080 GTPase Rab18, small G 100.0 8.7E-37 1.9E-41 210.5 18.4 202 11-216 7-209 (209)
6 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-36 5E-41 227.0 22.5 195 16-214 1-201 (201)
7 cd04110 Rab35 Rab35 subfamily. 100.0 2.2E-35 4.8E-40 221.3 24.0 196 13-214 4-199 (199)
8 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-35 4.7E-40 220.8 23.1 167 16-183 1-168 (202)
9 PLN03110 Rab GTPase; Provision 100.0 3.5E-35 7.6E-40 222.7 24.5 172 11-183 8-179 (216)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.1E-35 2.4E-40 214.3 19.5 176 9-185 8-183 (222)
11 cd04121 Rab40 Rab40 subfamily. 100.0 4.3E-35 9.3E-40 217.3 22.9 167 12-180 3-169 (189)
12 KOG0098 GTPase Rab2, small G p 100.0 1.3E-35 2.7E-40 209.7 18.9 177 12-189 3-179 (216)
13 KOG0394 Ras-related GTPase [Ge 100.0 7.2E-36 1.6E-40 210.5 17.2 172 12-183 6-183 (210)
14 cd04112 Rab26 Rab26 subfamily. 100.0 2.6E-34 5.6E-39 214.3 22.3 167 16-183 1-168 (191)
15 cd04126 Rab20 Rab20 subfamily. 100.0 2.4E-34 5.2E-39 217.5 22.0 188 16-214 1-220 (220)
16 PTZ00369 Ras-like protein; Pro 100.0 2.3E-34 5E-39 214.2 21.5 166 14-181 4-170 (189)
17 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-34 3.7E-39 215.0 20.4 166 17-184 1-169 (190)
18 cd04111 Rab39 Rab39 subfamily. 100.0 8.3E-34 1.8E-38 214.4 23.7 170 15-185 2-173 (211)
19 cd04122 Rab14 Rab14 subfamily. 100.0 7.5E-34 1.6E-38 207.2 21.3 164 15-179 2-165 (166)
20 cd01867 Rab8_Rab10_Rab13_like 100.0 9.3E-34 2E-38 206.9 21.2 165 14-179 2-166 (167)
21 KOG0079 GTP-binding protein H- 100.0 5E-35 1.1E-39 199.1 13.0 168 12-181 5-172 (198)
22 cd04125 RabA_like RabA-like su 100.0 2.1E-33 4.6E-38 208.9 23.0 169 16-185 1-169 (188)
23 cd04118 Rab24 Rab24 subfamily. 100.0 2.7E-33 5.9E-38 209.1 23.6 168 16-184 1-172 (193)
24 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-33 2.8E-38 208.4 20.9 165 13-179 3-181 (182)
25 PLN03108 Rab family protein; P 100.0 4.6E-33 1E-37 210.3 24.2 177 12-189 3-179 (210)
26 KOG0093 GTPase Rab3, small G p 100.0 4.3E-34 9.4E-39 194.3 16.4 176 9-185 15-190 (193)
27 cd04109 Rab28 Rab28 subfamily. 100.0 2.7E-33 5.8E-38 212.4 22.2 164 16-180 1-168 (215)
28 cd04133 Rop_like Rop subfamily 100.0 3E-33 6.5E-38 205.3 21.1 160 16-177 2-172 (176)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.3E-33 7.1E-38 204.9 21.0 165 16-182 3-168 (172)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.1E-33 1.8E-37 210.4 23.8 166 13-180 11-190 (232)
31 cd01865 Rab3 Rab3 subfamily. 100.0 5.7E-33 1.2E-37 202.4 21.7 163 16-179 2-164 (165)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.6E-33 1.2E-37 202.5 21.2 164 15-179 2-165 (166)
33 cd01875 RhoG RhoG subfamily. 100.0 7E-33 1.5E-37 206.4 21.8 163 15-179 3-178 (191)
34 cd04131 Rnd Rnd subfamily. Th 100.0 5.5E-33 1.2E-37 204.6 20.9 162 15-178 1-176 (178)
35 KOG0095 GTPase Rab30, small G 100.0 9.3E-34 2E-38 193.4 15.1 173 10-183 2-174 (213)
36 cd04117 Rab15 Rab15 subfamily. 100.0 6.8E-33 1.5E-37 201.2 20.5 160 16-176 1-160 (161)
37 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.7E-33 1.7E-37 204.6 20.6 163 16-179 1-167 (182)
38 cd04127 Rab27A Rab27a subfamil 100.0 1E-32 2.3E-37 203.7 21.2 167 13-180 2-179 (180)
39 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.4E-32 3E-37 208.0 22.2 166 16-183 2-181 (222)
40 KOG0091 GTPase Rab39, small G 100.0 1.2E-33 2.6E-38 195.5 14.7 176 13-189 6-184 (213)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 9.6E-33 2.1E-37 201.3 20.3 162 16-178 1-167 (168)
42 cd01868 Rab11_like Rab11-like. 100.0 1.5E-32 3.2E-37 200.1 21.2 163 14-177 2-164 (165)
43 PLN03071 GTP-binding nuclear p 100.0 2.1E-32 4.4E-37 207.8 22.1 166 13-182 11-176 (219)
44 cd01866 Rab2 Rab2 subfamily. 100.0 2.5E-32 5.4E-37 199.6 21.8 166 13-179 2-167 (168)
45 KOG0088 GTPase Rab21, small G 100.0 1.6E-33 3.5E-38 193.9 14.1 175 9-184 7-181 (218)
46 cd04132 Rho4_like Rho4-like su 100.0 2.4E-32 5.1E-37 203.0 21.2 167 16-184 1-173 (187)
47 KOG0086 GTPase Rab4, small G p 100.0 6.5E-33 1.4E-37 189.9 15.9 189 8-197 2-190 (214)
48 PF00071 Ras: Ras family; Int 100.0 3.5E-32 7.7E-37 197.5 20.2 161 17-178 1-161 (162)
49 cd01864 Rab19 Rab19 subfamily. 100.0 4.5E-32 9.8E-37 197.6 20.7 162 14-176 2-164 (165)
50 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.3E-32 1.4E-36 197.7 21.3 163 17-179 2-166 (170)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.1E-32 1.5E-36 198.3 20.8 160 16-177 2-174 (175)
52 cd00877 Ran Ran (Ras-related n 100.0 1E-31 2.2E-36 196.0 21.3 160 16-179 1-160 (166)
53 cd04113 Rab4 Rab4 subfamily. 100.0 6.9E-32 1.5E-36 195.8 20.1 160 16-176 1-160 (161)
54 smart00175 RAB Rab subfamily o 100.0 1E-31 2.2E-36 195.3 20.8 163 16-179 1-163 (164)
55 cd04136 Rap_like Rap-like subf 100.0 9.9E-32 2.1E-36 195.2 19.9 160 16-177 2-162 (163)
56 cd04134 Rho3 Rho3 subfamily. 100.0 1.3E-31 2.8E-36 199.4 20.9 162 17-180 2-176 (189)
57 cd04116 Rab9 Rab9 subfamily. 100.0 2.1E-31 4.5E-36 195.0 21.1 162 13-176 3-169 (170)
58 cd04124 RabL2 RabL2 subfamily. 100.0 2.8E-31 6.1E-36 192.7 20.8 160 16-180 1-160 (161)
59 cd04106 Rab23_lke Rab23-like s 100.0 1.8E-31 4E-36 193.7 19.8 159 16-176 1-161 (162)
60 cd04175 Rap1 Rap1 subgroup. T 100.0 2.3E-31 4.9E-36 193.7 20.1 160 16-177 2-162 (164)
61 cd01871 Rac1_like Rac1-like su 100.0 2.5E-31 5.5E-36 195.2 20.4 159 16-176 2-173 (174)
62 cd01861 Rab6 Rab6 subfamily. 100.0 3.9E-31 8.5E-36 191.7 20.3 160 16-176 1-160 (161)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 3.5E-31 7.6E-36 192.5 20.0 160 16-177 2-162 (163)
64 cd01860 Rab5_related Rab5-rela 100.0 7.8E-31 1.7E-35 190.5 21.0 161 16-177 2-162 (163)
65 PLN03118 Rab family protein; P 100.0 1.9E-30 4.1E-35 196.3 23.8 169 11-181 10-180 (211)
66 cd04140 ARHI_like ARHI subfami 100.0 5.6E-31 1.2E-35 191.8 20.1 159 16-176 2-163 (165)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.7E-31 1.5E-35 190.4 20.4 159 16-177 2-161 (162)
68 smart00173 RAS Ras subfamily o 100.0 6.3E-31 1.4E-35 191.3 19.9 161 16-178 1-162 (164)
69 smart00176 RAN Ran (Ras-relate 100.0 8.3E-31 1.8E-35 195.8 20.8 156 21-180 1-156 (200)
70 KOG0097 GTPase Rab14, small G 100.0 4.5E-31 9.8E-36 178.8 17.3 207 9-216 5-215 (215)
71 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.7E-30 3.6E-35 188.9 20.5 161 15-177 2-163 (164)
72 cd04123 Rab21 Rab21 subfamily. 100.0 2.3E-30 5E-35 187.6 20.6 161 16-177 1-161 (162)
73 cd01862 Rab7 Rab7 subfamily. 100.0 2.7E-30 5.9E-35 189.2 21.0 165 16-181 1-170 (172)
74 cd04142 RRP22 RRP22 subfamily. 100.0 1.8E-30 3.9E-35 194.2 20.2 164 16-180 1-176 (198)
75 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.8E-30 6.1E-35 189.1 20.8 162 15-177 2-168 (170)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 4E-30 8.8E-35 187.0 20.4 160 16-177 1-163 (164)
77 cd01863 Rab18 Rab18 subfamily. 100.0 5.4E-30 1.2E-34 185.8 20.6 159 16-176 1-160 (161)
78 KOG0081 GTPase Rab27, small G 100.0 2.9E-32 6.3E-37 187.9 7.9 177 10-187 4-190 (219)
79 cd04114 Rab30 Rab30 subfamily. 100.0 1.1E-29 2.4E-34 185.5 21.7 164 13-177 5-168 (169)
80 cd04143 Rhes_like Rhes_like su 100.0 5.1E-30 1.1E-34 197.4 20.6 161 16-178 1-171 (247)
81 smart00174 RHO Rho (Ras homolo 100.0 4.8E-30 1E-34 188.4 19.5 160 18-179 1-173 (174)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 7E-30 1.5E-34 190.4 20.3 159 15-176 2-194 (195)
83 cd04135 Tc10 TC10 subfamily. 100.0 1E-29 2.2E-34 186.7 20.6 160 16-177 1-173 (174)
84 cd04103 Centaurin_gamma Centau 100.0 6.6E-30 1.4E-34 184.8 19.0 154 16-176 1-157 (158)
85 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.5E-29 3.2E-34 185.8 20.9 158 16-175 1-171 (173)
86 cd01892 Miro2 Miro2 subfamily. 100.0 6.6E-30 1.4E-34 186.9 18.9 162 14-178 3-166 (169)
87 cd00154 Rab Rab family. Rab G 100.0 1.2E-29 2.5E-34 182.8 19.5 159 16-175 1-159 (159)
88 cd04177 RSR1 RSR1 subgroup. R 100.0 2.2E-29 4.8E-34 183.9 20.8 161 16-178 2-164 (168)
89 cd04148 RGK RGK subfamily. Th 100.0 3E-29 6.5E-34 190.7 20.9 167 16-185 1-170 (221)
90 cd04146 RERG_RasL11_like RERG/ 100.0 1.2E-29 2.7E-34 184.7 18.0 160 17-178 1-164 (165)
91 cd04139 RalA_RalB RalA/RalB su 100.0 1.4E-28 3E-33 178.7 20.2 162 16-179 1-163 (164)
92 cd01870 RhoA_like RhoA-like su 100.0 3.7E-28 8.1E-33 178.5 21.0 160 16-177 2-174 (175)
93 cd00876 Ras Ras family. The R 100.0 1.5E-28 3.3E-33 177.7 18.3 159 17-177 1-160 (160)
94 cd04149 Arf6 Arf6 subfamily. 100.0 7.7E-29 1.7E-33 181.0 16.5 154 14-175 8-167 (168)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.3E-29 1.6E-33 183.7 16.5 167 15-185 3-177 (183)
96 cd04147 Ras_dva Ras-dva subfam 100.0 2.4E-28 5.2E-33 183.1 19.4 161 17-178 1-163 (198)
97 PLN00223 ADP-ribosylation fact 100.0 1.4E-28 3.1E-33 181.6 17.9 159 14-180 16-180 (181)
98 cd00157 Rho Rho (Ras homology) 100.0 5.5E-28 1.2E-32 176.8 20.5 158 16-175 1-170 (171)
99 cd04129 Rho2 Rho2 subfamily. 100.0 6.1E-28 1.3E-32 179.3 20.8 163 16-180 2-175 (187)
100 cd04137 RheB Rheb (Ras Homolog 100.0 7.4E-28 1.6E-32 177.8 20.6 164 16-181 2-166 (180)
101 PTZ00133 ADP-ribosylation fact 100.0 1.3E-28 2.8E-33 182.1 16.2 159 15-181 17-181 (182)
102 cd04158 ARD1 ARD1 subfamily. 100.0 2.6E-28 5.6E-33 178.5 17.6 156 17-180 1-163 (169)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8.7E-29 1.9E-33 179.2 14.7 152 16-175 1-158 (159)
104 smart00177 ARF ARF-like small 100.0 1.8E-28 3.8E-33 180.4 16.2 155 15-177 13-173 (175)
105 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.6E-30 1.6E-34 171.1 6.3 164 19-183 1-165 (192)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.8E-29 2.1E-33 179.8 12.2 153 18-175 2-163 (164)
107 cd04154 Arl2 Arl2 subfamily. 100.0 7.9E-28 1.7E-32 176.6 16.9 155 13-175 12-172 (173)
108 cd04157 Arl6 Arl6 subfamily. 100.0 3.1E-28 6.7E-33 176.6 14.2 152 17-175 1-161 (162)
109 PTZ00132 GTP-binding nuclear p 100.0 5.8E-27 1.2E-31 177.8 21.6 165 12-180 6-170 (215)
110 cd01893 Miro1 Miro1 subfamily. 100.0 2E-27 4.4E-32 173.3 18.1 161 16-179 1-165 (166)
111 PF00025 Arf: ADP-ribosylation 100.0 2.5E-27 5.4E-32 174.1 16.3 157 13-177 12-175 (175)
112 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.6E-27 3.5E-32 173.9 14.0 154 17-175 1-166 (167)
113 KOG0395 Ras-related GTPase [Ge 100.0 1.2E-26 2.6E-31 172.2 18.1 164 15-180 3-167 (196)
114 KOG0073 GTP-binding ADP-ribosy 100.0 9.9E-27 2.1E-31 161.3 15.4 165 12-181 13-181 (185)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.1E-27 6.8E-32 171.1 13.5 152 17-175 1-159 (160)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.4E-26 3.1E-31 170.1 17.1 153 15-175 15-173 (174)
117 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.6E-26 7.9E-31 170.8 19.4 147 16-163 1-175 (202)
118 cd00879 Sar1 Sar1 subfamily. 99.9 1.4E-26 3E-31 172.4 16.6 155 14-176 18-189 (190)
119 PTZ00099 rab6; Provisional 99.9 5.1E-26 1.1E-30 167.0 19.1 144 39-183 4-147 (176)
120 KOG0393 Ras-related small GTPa 99.9 5.4E-27 1.2E-31 170.7 12.9 167 14-182 3-183 (198)
121 cd04151 Arl1 Arl1 subfamily. 99.9 7.4E-27 1.6E-31 168.9 13.3 151 17-175 1-157 (158)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.8E-26 6E-31 167.2 15.8 152 17-175 1-166 (167)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.5E-26 7.6E-31 165.3 15.3 151 17-175 1-157 (158)
124 smart00178 SAR Sar1p-like memb 99.9 3E-26 6.5E-31 169.8 14.3 155 14-176 16-183 (184)
125 cd01897 NOG NOG1 is a nucleola 99.9 1.8E-25 4E-30 163.0 15.5 155 17-177 2-167 (168)
126 cd01898 Obg Obg subfamily. Th 99.9 2.5E-25 5.4E-30 162.6 15.4 157 17-176 2-169 (170)
127 cd04159 Arl10_like Arl10-like 99.9 1.3E-25 2.8E-30 161.8 13.6 151 18-175 2-158 (159)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 7.6E-25 1.6E-29 175.0 17.5 164 14-180 157-330 (335)
129 PLN00023 GTP-binding protein; 99.9 1.3E-24 2.8E-29 170.2 18.2 143 10-152 16-188 (334)
130 cd04155 Arl3 Arl3 subfamily. 99.9 6.3E-25 1.4E-29 161.0 14.8 155 13-175 12-172 (173)
131 KOG0070 GTP-binding ADP-ribosy 99.9 4.6E-25 9.9E-30 156.8 12.8 161 12-180 14-180 (181)
132 cd01878 HflX HflX subfamily. 99.9 6.6E-25 1.4E-29 165.2 14.5 157 13-177 39-204 (204)
133 TIGR00231 small_GTP small GTP- 99.9 3.6E-24 7.9E-29 153.8 17.5 157 16-174 2-160 (161)
134 cd01890 LepA LepA subfamily. 99.9 1.5E-24 3.2E-29 159.9 15.5 154 17-177 2-176 (179)
135 KOG4252 GTP-binding protein [S 99.9 2.2E-26 4.8E-31 161.9 4.6 173 9-183 14-186 (246)
136 cd04171 SelB SelB subfamily. 99.9 3.5E-24 7.7E-29 155.4 15.2 153 16-175 1-163 (164)
137 KOG0075 GTP-binding ADP-ribosy 99.9 2.1E-25 4.5E-30 152.0 7.9 159 15-180 20-184 (186)
138 PF02421 FeoB_N: Ferrous iron 99.9 1E-24 2.2E-29 155.0 11.7 148 16-173 1-156 (156)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.3E-24 1.8E-28 154.2 14.6 158 17-178 2-166 (168)
140 COG1100 GTPase SAR1 and relate 99.9 7E-23 1.5E-27 155.7 20.2 169 16-184 6-191 (219)
141 cd01879 FeoB Ferrous iron tran 99.9 1.9E-23 4.2E-28 150.7 15.6 148 20-177 1-156 (158)
142 cd00882 Ras_like_GTPase Ras-li 99.9 3.8E-23 8.2E-28 147.2 16.4 155 20-175 1-157 (157)
143 TIGR03156 GTP_HflX GTP-binding 99.9 3E-23 6.6E-28 167.1 16.4 155 13-176 187-350 (351)
144 TIGR02729 Obg_CgtA Obg family 99.9 3.3E-23 7.2E-28 165.4 16.4 161 14-177 156-328 (329)
145 TIGR02528 EutP ethanolamine ut 99.9 8.6E-24 1.9E-28 150.1 11.7 134 17-174 2-141 (142)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-23 3.5E-28 156.5 12.0 161 16-180 3-190 (194)
147 PRK04213 GTP-binding protein; 99.9 6.6E-24 1.4E-28 159.4 9.9 152 14-179 8-193 (201)
148 PRK12297 obgE GTPase CgtA; Rev 99.9 2.5E-22 5.3E-27 164.4 18.7 160 15-181 158-330 (424)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-22 3.4E-27 145.6 15.6 146 16-177 2-156 (157)
150 TIGR00436 era GTP-binding prot 99.9 1.7E-22 3.6E-27 158.2 15.4 154 17-179 2-165 (270)
151 cd01881 Obg_like The Obg-like 99.9 1.2E-22 2.6E-27 149.1 13.1 154 20-176 1-175 (176)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.4E-22 1.2E-26 164.1 17.6 153 14-181 202-363 (442)
153 cd00881 GTP_translation_factor 99.9 2.8E-22 6.1E-27 148.7 14.3 155 17-177 1-186 (189)
154 PRK12296 obgE GTPase CgtA; Rev 99.9 5.5E-22 1.2E-26 164.4 16.6 166 13-182 157-344 (500)
155 KOG0071 GTP-binding ADP-ribosy 99.9 2.4E-22 5.3E-27 136.0 11.7 157 14-178 16-178 (180)
156 PRK15494 era GTPase Era; Provi 99.9 7.6E-22 1.6E-26 158.7 16.7 158 13-181 50-219 (339)
157 cd01894 EngA1 EngA1 subfamily. 99.9 3.2E-22 6.9E-27 144.0 13.2 147 19-177 1-157 (157)
158 PRK05291 trmE tRNA modificatio 99.9 3.7E-22 8E-27 165.9 15.1 148 15-179 215-371 (449)
159 PRK03003 GTP-binding protein D 99.9 4.2E-22 9.1E-27 167.0 15.3 162 14-181 210-385 (472)
160 PRK03003 GTP-binding protein D 99.9 6.5E-22 1.4E-26 165.9 16.2 155 13-179 36-200 (472)
161 KOG1673 Ras GTPases [General f 99.9 3.4E-22 7.4E-27 137.7 11.8 167 15-182 20-190 (205)
162 PRK11058 GTPase HflX; Provisio 99.9 9.2E-22 2E-26 161.9 16.4 159 15-180 197-364 (426)
163 cd01889 SelB_euk SelB subfamil 99.9 5.2E-22 1.1E-26 148.1 12.8 159 16-178 1-186 (192)
164 PF08477 Miro: Miro-like prote 99.9 6.1E-22 1.3E-26 136.4 12.0 114 17-131 1-119 (119)
165 PRK15467 ethanolamine utilizat 99.9 1.4E-21 3.1E-26 141.1 12.9 141 17-180 3-149 (158)
166 KOG0076 GTP-binding ADP-ribosy 99.9 1.7E-22 3.6E-27 141.7 7.4 164 13-180 15-189 (197)
167 cd01895 EngA2 EngA2 subfamily. 99.9 6.5E-21 1.4E-25 139.2 16.1 155 16-176 3-173 (174)
168 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-20 2.5E-25 157.1 19.4 160 13-180 170-346 (429)
169 PRK12298 obgE GTPase CgtA; Rev 99.9 7E-21 1.5E-25 155.0 16.8 163 15-180 159-335 (390)
170 TIGR01393 lepA GTP-binding pro 99.9 4E-21 8.6E-26 164.2 14.6 156 16-178 4-180 (595)
171 TIGR00487 IF-2 translation ini 99.9 1.4E-20 3E-25 160.2 17.8 153 14-175 86-247 (587)
172 PRK00454 engB GTP-binding prot 99.9 5.5E-21 1.2E-25 142.8 13.5 161 11-178 20-194 (196)
173 cd01888 eIF2_gamma eIF2-gamma 99.9 3.7E-21 8E-26 144.6 12.1 160 16-177 1-198 (203)
174 cd04163 Era Era subfamily. Er 99.9 2.1E-20 4.5E-25 135.5 14.8 155 15-176 3-167 (168)
175 TIGR03598 GTPase_YsxC ribosome 99.9 6.9E-21 1.5E-25 140.4 12.1 149 12-167 15-179 (179)
176 PRK05306 infB translation init 99.9 1.5E-20 3.3E-25 163.6 15.7 158 13-176 288-450 (787)
177 TIGR00475 selB selenocysteine- 99.9 2.7E-20 5.8E-25 159.0 16.3 155 16-179 1-167 (581)
178 CHL00189 infB translation init 99.9 1.7E-20 3.6E-25 162.0 15.0 161 13-177 242-409 (742)
179 KOG4423 GTP-binding protein-li 99.9 5.2E-23 1.1E-27 145.8 -0.4 185 11-195 21-211 (229)
180 PRK00093 GTP-binding protein D 99.9 2.6E-20 5.7E-25 155.3 15.6 146 16-175 2-159 (435)
181 PF00009 GTP_EFTU: Elongation 99.8 8.8E-21 1.9E-25 141.0 11.2 159 14-178 2-187 (188)
182 TIGR00437 feoB ferrous iron tr 99.8 3.1E-20 6.7E-25 158.8 15.6 146 22-177 1-154 (591)
183 cd04105 SR_beta Signal recogni 99.8 3.9E-20 8.5E-25 138.9 14.0 115 17-134 2-123 (203)
184 PRK00093 GTP-binding protein D 99.8 1E-19 2.2E-24 151.7 17.4 160 13-180 171-346 (435)
185 PRK00089 era GTPase Era; Revie 99.8 6E-20 1.3E-24 145.5 15.2 157 15-178 5-171 (292)
186 TIGR03594 GTPase_EngA ribosome 99.8 5.5E-20 1.2E-24 153.1 15.6 151 17-179 1-161 (429)
187 PRK09554 feoB ferrous iron tra 99.8 1.3E-19 2.8E-24 158.5 18.4 153 15-177 3-167 (772)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.9E-20 4.2E-25 133.2 10.5 186 13-202 8-196 (216)
189 KOG0072 GTP-binding ADP-ribosy 99.8 3.1E-21 6.8E-26 131.3 6.2 159 14-180 17-181 (182)
190 PRK09518 bifunctional cytidyla 99.8 1.6E-19 3.5E-24 158.0 18.1 157 11-179 271-437 (712)
191 KOG0074 GTP-binding ADP-ribosy 99.8 1.5E-20 3.4E-25 127.5 8.8 160 14-177 16-178 (185)
192 cd00880 Era_like Era (E. coli 99.8 6.5E-20 1.4E-24 131.7 12.6 152 20-176 1-162 (163)
193 PRK05433 GTP-binding protein L 99.8 9.2E-20 2E-24 156.0 14.3 159 14-179 6-185 (600)
194 COG1160 Predicted GTPases [Gen 99.8 9.8E-20 2.1E-24 146.6 13.3 149 16-178 4-165 (444)
195 PRK09518 bifunctional cytidyla 99.8 1.2E-19 2.6E-24 158.8 15.0 158 14-180 449-623 (712)
196 COG2229 Predicted GTPase [Gene 99.8 8E-19 1.7E-23 124.9 15.5 158 12-176 7-176 (187)
197 cd01896 DRG The developmentall 99.8 1.1E-18 2.4E-23 133.5 17.2 151 17-177 2-225 (233)
198 KOG3883 Ras family small GTPas 99.8 1.3E-18 2.8E-23 119.7 15.6 169 14-184 8-181 (198)
199 COG1159 Era GTPase [General fu 99.8 4.4E-19 9.6E-24 135.8 14.6 159 14-179 5-173 (298)
200 TIGR00483 EF-1_alpha translati 99.8 2.4E-19 5.2E-24 148.9 13.3 154 13-170 5-199 (426)
201 COG0486 ThdF Predicted GTPase 99.8 6.4E-19 1.4E-23 142.3 15.1 152 16-180 218-378 (454)
202 TIGR00491 aIF-2 translation in 99.8 8.9E-19 1.9E-23 149.0 15.9 157 16-179 5-217 (590)
203 PF10662 PduV-EutP: Ethanolami 99.8 3.3E-19 7.2E-24 124.1 10.7 135 17-174 3-142 (143)
204 PRK12317 elongation factor 1-a 99.8 5.2E-19 1.1E-23 146.8 13.7 154 13-170 4-197 (425)
205 COG1160 Predicted GTPases [Gen 99.8 3.7E-18 8E-23 137.6 17.6 163 14-183 177-356 (444)
206 cd01876 YihA_EngB The YihA (En 99.8 1.1E-18 2.4E-23 126.7 13.4 151 17-176 1-169 (170)
207 KOG1423 Ras-like GTPase ERA [C 99.8 1.9E-18 4.1E-23 132.1 13.7 178 5-187 62-280 (379)
208 PRK10218 GTP-binding protein; 99.8 3.4E-18 7.3E-23 145.9 16.8 159 14-178 4-195 (607)
209 TIGR01394 TypA_BipA GTP-bindin 99.8 2E-18 4.3E-23 147.4 14.3 156 17-178 3-191 (594)
210 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.3E-18 2.8E-23 131.3 11.6 148 17-169 1-185 (208)
211 COG2262 HflX GTPases [General 99.8 4.1E-18 8.9E-23 135.4 14.6 170 10-187 187-365 (411)
212 cd04168 TetM_like Tet(M)-like 99.8 1.2E-17 2.5E-22 128.1 15.6 112 17-134 1-130 (237)
213 TIGR03680 eif2g_arch translati 99.8 2.4E-18 5.2E-23 141.8 12.4 163 14-178 3-196 (406)
214 COG0370 FeoB Fe2+ transport sy 99.8 7.2E-18 1.6E-22 141.6 15.2 155 16-180 4-166 (653)
215 cd01883 EF1_alpha Eukaryotic e 99.8 1.4E-18 2.9E-23 132.1 10.0 147 17-167 1-194 (219)
216 PRK04000 translation initiatio 99.8 4.7E-18 1E-22 140.1 13.0 165 11-178 5-201 (411)
217 PRK10512 selenocysteinyl-tRNA- 99.8 1.7E-17 3.6E-22 142.4 15.6 154 17-179 2-167 (614)
218 KOG1489 Predicted GTP-binding 99.8 8.5E-18 1.8E-22 129.1 12.2 157 14-175 195-364 (366)
219 PRK04004 translation initiatio 99.8 2.3E-17 5E-22 140.8 16.1 155 16-177 7-217 (586)
220 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.2E-17 6.9E-22 122.1 14.7 147 15-167 2-172 (195)
221 COG0218 Predicted GTPase [Gene 99.8 3.6E-17 7.8E-22 119.0 13.2 159 12-179 21-198 (200)
222 KOG1707 Predicted Ras related/ 99.7 7.9E-18 1.7E-22 138.3 9.1 165 15-182 9-179 (625)
223 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.6E-16 7.7E-21 118.9 15.5 152 17-174 1-219 (224)
224 cd04167 Snu114p Snu114p subfam 99.7 8E-17 1.7E-21 122.0 11.9 113 17-133 2-136 (213)
225 PRK12736 elongation factor Tu; 99.7 1.8E-16 3.8E-21 130.3 14.7 159 12-176 9-199 (394)
226 COG1084 Predicted GTPase [Gene 99.7 2.5E-16 5.5E-21 121.9 14.2 162 14-182 167-340 (346)
227 cd01850 CDC_Septin CDC/Septin. 99.7 2.8E-16 6E-21 123.0 14.7 144 13-161 2-185 (276)
228 cd04104 p47_IIGP_like p47 (47- 99.7 4.9E-16 1.1E-20 116.2 15.1 158 16-181 2-187 (197)
229 TIGR00485 EF-Tu translation el 99.7 2.7E-16 5.8E-21 129.3 14.2 152 12-169 9-185 (394)
230 PRK12735 elongation factor Tu; 99.7 3.8E-16 8.2E-21 128.4 14.6 159 12-176 9-201 (396)
231 cd04170 EF-G_bact Elongation f 99.7 9.4E-16 2E-20 120.1 15.5 112 17-134 1-130 (268)
232 KOG0077 Vesicle coat complex C 99.7 4.8E-17 1.1E-21 113.6 7.2 156 16-176 21-191 (193)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.8E-16 4E-21 120.1 10.8 169 17-188 1-186 (232)
234 CHL00071 tufA elongation facto 99.7 5E-16 1.1E-20 128.2 14.3 149 12-166 9-181 (409)
235 KOG0462 Elongation factor-type 99.7 7.1E-16 1.5E-20 126.1 13.8 162 13-178 58-235 (650)
236 COG0536 Obg Predicted GTPase [ 99.7 9.1E-16 2E-20 119.4 13.7 166 14-181 158-336 (369)
237 COG1163 DRG Predicted GTPase [ 99.7 2.8E-15 6E-20 115.9 15.7 156 13-178 61-289 (365)
238 PLN00043 elongation factor 1-a 99.7 7.1E-16 1.5E-20 128.1 12.7 150 13-168 5-203 (447)
239 cd01886 EF-G Elongation factor 99.7 8.2E-16 1.8E-20 120.0 12.3 112 17-134 1-130 (270)
240 PRK05124 cysN sulfate adenylyl 99.7 8E-16 1.7E-20 128.8 12.9 153 13-170 25-217 (474)
241 PF01926 MMR_HSR1: 50S ribosom 99.7 1.4E-15 3.1E-20 104.1 11.9 106 17-129 1-116 (116)
242 cd01885 EF2 EF2 (for archaea a 99.7 1E-15 2.2E-20 115.9 11.4 113 17-133 2-138 (222)
243 TIGR02034 CysN sulfate adenyly 99.7 8.7E-16 1.9E-20 126.6 11.7 149 16-169 1-188 (406)
244 PTZ00141 elongation factor 1- 99.7 1.6E-15 3.4E-20 126.2 13.2 151 13-168 5-203 (446)
245 PRK00049 elongation factor Tu; 99.7 4.7E-15 1E-19 121.9 15.6 148 11-164 8-179 (396)
246 cd04169 RF3 RF3 subfamily. Pe 99.7 3.3E-15 7.2E-20 116.5 13.9 112 17-134 4-137 (267)
247 PRK13351 elongation factor G; 99.7 1.2E-15 2.6E-20 133.7 12.8 116 13-134 6-139 (687)
248 COG0532 InfB Translation initi 99.7 7.7E-15 1.7E-19 120.4 16.5 157 16-180 6-172 (509)
249 cd01899 Ygr210 Ygr210 subfamil 99.7 5E-15 1.1E-19 117.7 15.0 81 18-98 1-110 (318)
250 PLN03126 Elongation factor Tu; 99.7 4E-15 8.6E-20 124.3 15.0 148 12-165 78-249 (478)
251 PRK00741 prfC peptide chain re 99.6 4E-15 8.6E-20 125.8 13.9 116 13-134 8-145 (526)
252 COG0481 LepA Membrane GTPase L 99.6 4E-15 8.8E-20 120.0 13.0 160 13-179 7-187 (603)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.2E-14 4.8E-19 107.3 15.7 160 16-179 1-185 (196)
254 KOG1145 Mitochondrial translat 99.6 2E-14 4.3E-19 117.8 16.3 180 14-202 152-340 (683)
255 KOG1191 Mitochondrial GTPase [ 99.6 4E-15 8.7E-20 120.5 11.6 166 15-183 268-455 (531)
256 COG3596 Predicted GTPase [Gene 99.6 3.3E-15 7.2E-20 113.2 10.3 162 14-179 38-223 (296)
257 PLN03127 Elongation factor Tu; 99.6 1.6E-14 3.5E-19 120.0 15.0 159 12-176 58-250 (447)
258 PRK05506 bifunctional sulfate 99.6 3.8E-15 8.3E-20 129.2 11.1 151 13-168 22-211 (632)
259 PTZ00327 eukaryotic translatio 99.6 6.6E-15 1.4E-19 122.2 11.3 164 13-178 32-233 (460)
260 TIGR00503 prfC peptide chain r 99.6 1.9E-14 4.2E-19 121.7 13.9 115 13-133 9-145 (527)
261 PRK12739 elongation factor G; 99.6 1.9E-14 4.1E-19 126.0 14.4 117 12-134 5-139 (691)
262 PF09439 SRPRB: Signal recogni 99.6 1.9E-15 4.2E-20 109.9 6.4 116 16-135 4-127 (181)
263 TIGR00484 EF-G translation elo 99.6 2.5E-14 5.4E-19 125.3 13.4 117 12-134 7-141 (689)
264 cd00066 G-alpha G protein alph 99.6 1.2E-13 2.5E-18 110.4 15.8 125 55-181 154-314 (317)
265 KOG3905 Dynein light intermedi 99.6 5.9E-14 1.3E-18 108.5 12.9 161 16-179 53-291 (473)
266 PRK09602 translation-associate 99.6 1.3E-13 2.8E-18 112.8 15.4 83 16-98 2-113 (396)
267 PRK00007 elongation factor G; 99.6 1.1E-13 2.4E-18 121.1 14.8 117 12-134 7-141 (693)
268 smart00275 G_alpha G protein a 99.6 2.4E-13 5.2E-18 109.5 15.6 127 53-181 175-337 (342)
269 COG5256 TEF1 Translation elong 99.6 6.4E-14 1.4E-18 111.8 11.7 154 13-169 5-202 (428)
270 PRK09866 hypothetical protein; 99.5 1.9E-13 4.1E-18 115.2 15.0 109 64-175 230-350 (741)
271 COG4917 EutP Ethanolamine util 99.5 2.2E-14 4.9E-19 95.8 7.0 136 17-175 3-143 (148)
272 KOG0090 Signal recognition par 99.5 7.7E-14 1.7E-18 101.8 9.7 155 16-176 39-237 (238)
273 PRK12740 elongation factor G; 99.5 9.9E-14 2.2E-18 121.4 12.0 108 21-134 1-126 (668)
274 KOG1532 GTPase XAB1, interacts 99.5 5.5E-14 1.2E-18 106.4 8.6 174 10-185 14-271 (366)
275 KOG1490 GTP-binding protein CR 99.5 6.5E-14 1.4E-18 113.7 8.4 168 15-185 168-348 (620)
276 PF05783 DLIC: Dynein light in 99.5 7.9E-13 1.7E-17 109.8 14.7 162 16-180 26-266 (472)
277 COG1217 TypA Predicted membran 99.5 7.2E-13 1.6E-17 107.0 12.9 158 16-179 6-196 (603)
278 PRK14845 translation initiatio 99.5 1.1E-12 2.4E-17 117.4 15.1 155 12-178 463-673 (1049)
279 cd01853 Toc34_like Toc34-like 99.5 1.8E-12 3.9E-17 99.9 13.9 121 11-133 27-162 (249)
280 TIGR00101 ureG urease accessor 99.4 2.2E-12 4.9E-17 96.3 12.3 103 64-178 92-196 (199)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.4E-12 7.4E-17 100.0 13.4 120 12-133 35-166 (313)
282 PRK13768 GTPase; Provisional 99.4 1.4E-12 3.1E-17 101.0 11.2 113 65-178 98-247 (253)
283 PF04548 AIG1: AIG1 family; I 99.4 3.3E-12 7.1E-17 96.6 12.8 163 16-181 1-189 (212)
284 KOG1707 Predicted Ras related/ 99.4 8.1E-12 1.8E-16 103.4 15.6 163 11-179 421-584 (625)
285 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.5E-17 115.2 11.0 120 11-134 15-152 (720)
286 COG2895 CysN GTPases - Sulfate 99.4 3E-12 6.4E-17 100.2 11.8 151 13-168 4-193 (431)
287 PTZ00258 GTP-binding protein; 99.4 5.9E-12 1.3E-16 102.2 13.0 86 13-98 19-126 (390)
288 TIGR00073 hypB hydrogenase acc 99.4 6.9E-12 1.5E-16 94.5 12.6 154 12-177 19-206 (207)
289 PRK09435 membrane ATPase/prote 99.4 1.6E-11 3.5E-16 98.0 14.5 106 64-180 149-262 (332)
290 PRK09601 GTP-binding protein Y 99.4 1.9E-11 4E-16 98.3 14.7 83 16-98 3-107 (364)
291 KOG0082 G-protein alpha subuni 99.4 2E-11 4.3E-16 97.0 14.3 131 51-183 184-349 (354)
292 TIGR00157 ribosome small subun 99.4 4E-12 8.6E-17 98.0 9.8 95 75-174 24-119 (245)
293 PF00735 Septin: Septin; Inte 99.4 7.7E-12 1.7E-16 98.0 11.3 141 14-159 3-182 (281)
294 PRK07560 elongation factor EF- 99.4 6.7E-12 1.5E-16 110.7 11.6 120 11-134 16-153 (731)
295 PF03029 ATP_bind_1: Conserved 99.3 1E-12 2.2E-17 100.7 4.9 111 65-177 92-236 (238)
296 smart00010 small_GTPase Small 99.3 1E-11 2.2E-16 85.6 9.0 114 16-167 1-115 (124)
297 PF05049 IIGP: Interferon-indu 99.3 4.4E-12 9.4E-17 102.0 7.7 160 14-181 34-221 (376)
298 TIGR02836 spore_IV_A stage IV 99.3 6.1E-11 1.3E-15 95.6 14.1 141 15-162 17-219 (492)
299 COG0378 HypB Ni2+-binding GTPa 99.3 1.4E-11 3E-16 89.4 9.2 151 15-177 13-200 (202)
300 KOG0461 Selenocysteine-specifi 99.3 4.8E-11 1E-15 93.4 12.8 160 16-179 8-194 (522)
301 cd01882 BMS1 Bms1. Bms1 is an 99.3 6.4E-11 1.4E-15 90.3 12.9 140 13-164 37-182 (225)
302 KOG3886 GTP-binding protein [S 99.3 5.2E-12 1.1E-16 93.4 6.3 147 15-163 4-164 (295)
303 KOG1144 Translation initiation 99.3 2.5E-11 5.4E-16 102.9 10.8 161 16-183 476-692 (1064)
304 KOG0458 Elongation factor 1 al 99.3 8.9E-11 1.9E-15 97.3 13.7 157 10-169 172-373 (603)
305 PLN00116 translation elongatio 99.3 3E-11 6.5E-16 107.9 10.9 120 10-133 14-163 (843)
306 cd01900 YchF YchF subfamily. 99.3 5.4E-11 1.2E-15 92.7 10.7 81 18-98 1-103 (274)
307 PTZ00416 elongation factor 2; 99.3 3E-11 6.5E-16 107.7 9.7 118 12-133 16-157 (836)
308 KOG0410 Predicted GTP binding 99.2 9.7E-12 2.1E-16 96.4 5.5 158 12-182 175-345 (410)
309 TIGR00750 lao LAO/AO transport 99.2 5.3E-11 1.2E-15 94.6 9.7 105 63-178 126-238 (300)
310 COG0012 Predicted GTPase, prob 99.2 4E-10 8.7E-15 89.6 14.0 85 15-99 2-109 (372)
311 PF00350 Dynamin_N: Dynamin fa 99.2 9.1E-11 2E-15 85.4 9.5 63 65-130 102-168 (168)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 2.8E-10 6.2E-15 96.7 12.4 123 10-134 113-250 (763)
313 PF03308 ArgK: ArgK protein; 99.2 3.9E-11 8.5E-16 91.1 5.7 156 14-182 28-234 (266)
314 COG1703 ArgK Putative periplas 99.2 2.4E-11 5.2E-16 93.6 4.2 109 63-184 143-260 (323)
315 PRK10463 hydrogenase nickel in 99.2 2.2E-10 4.7E-15 89.3 9.6 55 121-176 231-287 (290)
316 KOG0705 GTPase-activating prot 99.2 1.1E-10 2.4E-15 96.1 8.2 168 15-189 30-200 (749)
317 smart00053 DYNc Dynamin, GTPas 99.2 3.5E-10 7.6E-15 86.5 10.4 68 64-134 125-206 (240)
318 COG5257 GCD11 Translation init 99.2 7.4E-11 1.6E-15 91.5 6.7 166 13-180 8-204 (415)
319 PF00503 G-alpha: G-protein al 99.1 7.6E-10 1.7E-14 91.2 12.4 124 52-177 225-389 (389)
320 COG5019 CDC3 Septin family pro 99.1 1.1E-09 2.5E-14 86.6 12.2 141 11-156 19-199 (373)
321 KOG2655 Septin family protein 99.1 1.8E-09 4E-14 86.0 12.9 147 11-162 17-201 (366)
322 KOG1547 Septin CDC10 and relat 99.1 4.3E-10 9.4E-15 83.9 8.5 158 10-172 41-237 (336)
323 COG0480 FusA Translation elong 99.1 9.9E-10 2.1E-14 95.3 11.3 129 12-145 7-153 (697)
324 COG3276 SelB Selenocysteine-sp 99.1 1.4E-09 3.1E-14 87.8 11.0 152 17-178 2-162 (447)
325 COG0050 TufB GTPases - transla 99.0 5.4E-09 1.2E-13 80.4 11.4 141 13-162 10-177 (394)
326 cd01855 YqeH YqeH. YqeH is an 99.0 3.9E-09 8.5E-14 78.5 8.5 94 77-178 24-125 (190)
327 KOG0468 U5 snRNP-specific prot 99.0 5E-09 1.1E-13 88.3 9.6 119 10-132 123-261 (971)
328 KOG1486 GTP-binding protein DR 98.9 8.4E-08 1.8E-12 72.4 15.0 110 14-125 61-178 (364)
329 PRK12289 GTPase RsgA; Reviewed 98.9 6E-09 1.3E-13 84.1 9.3 91 79-175 81-172 (352)
330 KOG1954 Endocytosis/signaling 98.9 7.1E-09 1.5E-13 82.1 9.1 122 10-134 53-225 (532)
331 PRK12288 GTPase RsgA; Reviewed 98.9 8.8E-09 1.9E-13 83.2 9.8 88 85-175 118-205 (347)
332 cd01854 YjeQ_engC YjeQ/EngC. 98.9 7.2E-09 1.6E-13 81.9 9.1 88 82-175 73-161 (287)
333 cd01859 MJ1464 MJ1464. This f 98.9 4.3E-09 9.3E-14 75.7 7.0 94 78-178 3-96 (156)
334 COG4108 PrfC Peptide chain rel 98.9 1.3E-08 2.9E-13 82.2 10.1 128 17-153 14-163 (528)
335 PRK00098 GTPase RsgA; Reviewed 98.9 1.1E-08 2.5E-13 81.2 8.8 86 84-174 77-163 (298)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.6E-08 3.5E-13 71.5 6.2 53 17-74 85-138 (141)
337 KOG0099 G protein subunit Galp 98.8 8.2E-08 1.8E-12 72.8 9.7 128 52-181 192-372 (379)
338 KOG3887 Predicted small GTPase 98.8 7.8E-08 1.7E-12 72.2 9.2 169 14-185 26-209 (347)
339 KOG2486 Predicted GTPase [Gene 98.7 9.2E-09 2E-13 78.5 4.1 155 12-175 133-313 (320)
340 COG5258 GTPBP1 GTPase [General 98.7 1.3E-07 2.9E-12 75.4 10.1 160 10-173 112-334 (527)
341 cd04178 Nucleostemin_like Nucl 98.7 4E-08 8.6E-13 71.8 6.8 57 13-74 115-172 (172)
342 TIGR03597 GTPase_YqeH ribosome 98.7 4.5E-08 9.8E-13 79.8 7.4 95 74-176 50-151 (360)
343 TIGR00092 GTP-binding protein 98.7 4.6E-08 1E-12 78.9 7.1 83 16-98 3-108 (368)
344 cd01858 NGP_1 NGP-1. Autoanti 98.7 6.2E-08 1.3E-12 69.8 6.8 55 15-74 102-157 (157)
345 KOG1143 Predicted translation 98.7 1.1E-07 2.3E-12 75.7 8.5 185 10-198 162-410 (591)
346 KOG1491 Predicted GTP-binding 98.7 8.5E-08 1.9E-12 75.3 7.2 87 13-99 18-126 (391)
347 cd01849 YlqF_related_GTPase Yl 98.6 2.1E-07 4.6E-12 66.8 8.5 87 89-180 1-87 (155)
348 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.6E-07 3.5E-12 67.6 7.7 89 84-178 5-95 (157)
349 KOG0085 G protein subunit Galp 98.6 3.1E-08 6.7E-13 73.9 3.9 121 62-182 197-353 (359)
350 cd01856 YlqF YlqF. Proteins o 98.6 1.6E-07 3.5E-12 68.6 6.8 56 14-74 114-170 (171)
351 cd01855 YqeH YqeH. YqeH is an 98.6 8.8E-08 1.9E-12 71.2 5.3 54 16-74 128-190 (190)
352 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.4E-07 5.2E-12 73.3 7.9 58 13-75 119-177 (287)
353 TIGR03596 GTPase_YlqF ribosome 98.6 2.2E-07 4.8E-12 73.1 7.3 56 14-74 117-173 (276)
354 cd01859 MJ1464 MJ1464. This f 98.5 2.9E-07 6.3E-12 66.2 7.0 57 14-74 100-156 (156)
355 KOG1487 GTP-binding protein DR 98.5 1E-06 2.2E-11 67.0 9.6 88 16-105 60-154 (358)
356 TIGR03348 VI_IcmF type VI secr 98.5 5.3E-07 1.1E-11 83.7 9.5 112 18-134 114-257 (1169)
357 COG1161 Predicted GTPases [Gen 98.5 2.2E-07 4.9E-12 74.5 6.3 56 14-74 131-187 (322)
358 KOG0448 Mitofusin 1 GTPase, in 98.5 2.4E-06 5.1E-11 72.8 12.3 142 15-161 109-309 (749)
359 PF03193 DUF258: Protein of un 98.5 1.5E-07 3.3E-12 67.4 3.9 59 17-78 37-101 (161)
360 PF09547 Spore_IV_A: Stage IV 98.5 7.9E-06 1.7E-10 66.5 13.9 141 16-162 18-219 (492)
361 PRK14974 cell division protein 98.5 3.5E-07 7.6E-12 73.5 6.2 101 64-177 223-329 (336)
362 cd01856 YlqF YlqF. Proteins o 98.5 1.3E-06 2.7E-11 63.9 8.6 90 80-178 12-101 (171)
363 KOG0460 Mitochondrial translat 98.4 1.3E-06 2.9E-11 68.8 8.4 144 13-161 52-218 (449)
364 cd01849 YlqF_related_GTPase Yl 98.4 6.4E-07 1.4E-11 64.3 6.4 56 14-74 99-155 (155)
365 KOG4273 Uncharacterized conser 98.4 4.6E-06 9.9E-11 63.2 10.8 161 16-179 5-223 (418)
366 PRK10416 signal recognition pa 98.4 1.9E-06 4.2E-11 68.9 9.4 96 64-172 197-304 (318)
367 cd01851 GBP Guanylate-binding 98.4 6.3E-06 1.4E-10 62.9 11.5 89 13-101 5-105 (224)
368 KOG0465 Mitochondrial elongati 98.4 1.7E-06 3.7E-11 72.8 8.3 113 14-132 38-168 (721)
369 TIGR01425 SRP54_euk signal rec 98.4 4.1E-06 8.9E-11 69.2 10.4 86 63-159 182-273 (429)
370 PRK12288 GTPase RsgA; Reviewed 98.4 9.6E-07 2.1E-11 71.5 6.2 58 18-78 208-271 (347)
371 PRK01889 GTPase RsgA; Reviewed 98.4 2.6E-06 5.6E-11 69.4 8.7 84 85-174 110-193 (356)
372 cd03112 CobW_like The function 98.4 2.5E-06 5.4E-11 61.5 7.7 21 18-38 3-23 (158)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.6E-06 3.4E-11 61.3 6.5 75 83-164 7-83 (141)
374 TIGR00064 ftsY signal recognit 98.3 5.4E-06 1.2E-10 65.0 10.0 99 64-175 155-265 (272)
375 COG1618 Predicted nucleotide k 98.3 3.2E-05 6.9E-10 54.9 12.4 147 14-178 4-176 (179)
376 PRK13796 GTPase YqeH; Provisio 98.3 5.4E-06 1.2E-10 67.8 9.6 83 86-176 67-157 (365)
377 KOG0464 Elongation factor G [T 98.3 1.3E-07 2.9E-12 76.1 -0.0 114 15-134 37-168 (753)
378 TIGR00157 ribosome small subun 98.3 1.7E-06 3.6E-11 66.9 5.9 58 17-78 122-185 (245)
379 TIGR03596 GTPase_YlqF ribosome 98.3 5.1E-06 1.1E-10 65.4 8.7 92 81-181 15-106 (276)
380 KOG0463 GTP-binding protein GP 98.3 7.7E-06 1.7E-10 65.5 9.1 151 14-170 132-350 (641)
381 KOG0467 Translation elongation 98.3 4.2E-06 9.2E-11 72.1 8.0 114 12-131 6-135 (887)
382 COG1162 Predicted GTPases [Gen 98.2 2E-06 4.3E-11 67.3 5.3 60 17-79 166-231 (301)
383 PRK12289 GTPase RsgA; Reviewed 98.2 2.3E-06 5E-11 69.3 5.9 56 18-76 175-236 (352)
384 KOG0459 Polypeptide release fa 98.2 5.3E-06 1.2E-10 66.8 7.7 158 12-171 76-279 (501)
385 TIGR03597 GTPase_YqeH ribosome 98.2 2.8E-06 6.2E-11 69.3 6.3 56 16-76 155-216 (360)
386 COG1162 Predicted GTPases [Gen 98.2 1.4E-05 3E-10 62.6 9.5 93 79-175 71-164 (301)
387 PRK09563 rbgA GTPase YlqF; Rev 98.2 8.5E-06 1.8E-10 64.5 8.4 91 81-180 18-108 (287)
388 PRK13796 GTPase YqeH; Provisio 98.2 2.5E-06 5.5E-11 69.7 5.5 55 16-75 161-221 (365)
389 KOG0466 Translation initiation 98.2 1E-06 2.2E-11 68.5 3.0 180 11-198 34-259 (466)
390 COG5192 BMS1 GTP-binding prote 98.2 2.2E-05 4.8E-10 66.0 10.5 137 13-162 67-210 (1077)
391 COG3523 IcmF Type VI protein s 98.2 7.9E-06 1.7E-10 74.7 8.2 116 18-134 128-270 (1188)
392 PRK13695 putative NTPase; Prov 98.2 5.5E-05 1.2E-09 55.4 11.3 49 118-177 124-172 (174)
393 KOG0447 Dynamin-like GTP bindi 98.1 7E-05 1.5E-09 62.8 12.2 157 12-172 305-538 (980)
394 PRK14721 flhF flagellar biosyn 98.1 3.5E-05 7.5E-10 63.8 10.1 143 16-172 192-372 (420)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.1E-05 2.3E-10 63.9 6.1 60 16-78 162-227 (287)
396 COG0523 Putative GTPases (G3E 98.0 0.00016 3.4E-09 58.0 12.2 88 64-160 85-184 (323)
397 PRK14722 flhF flagellar biosyn 98.0 3.8E-05 8.3E-10 62.6 8.9 139 16-159 138-315 (374)
398 PRK12727 flagellar biosynthesi 98.0 0.00038 8.2E-09 59.1 14.8 157 16-185 351-547 (559)
399 KOG1424 Predicted GTP-binding 98.0 1.2E-05 2.5E-10 66.7 5.7 55 15-74 314-369 (562)
400 PRK00098 GTPase RsgA; Reviewed 98.0 1.5E-05 3.3E-10 63.4 6.1 58 17-77 166-229 (298)
401 PRK11537 putative GTP-binding 98.0 7.9E-05 1.7E-09 59.8 10.1 23 16-38 5-27 (318)
402 PF02492 cobW: CobW/HypB/UreG, 98.0 1.8E-05 4E-10 58.2 6.1 82 64-152 85-171 (178)
403 PRK06995 flhF flagellar biosyn 98.0 3E-05 6.5E-10 65.2 7.7 149 17-179 258-448 (484)
404 cd03114 ArgK-like The function 97.9 7E-05 1.5E-09 53.3 8.2 58 63-131 91-148 (148)
405 cd03115 SRP The signal recogni 97.9 5.3E-05 1.1E-09 55.3 7.6 83 64-157 83-171 (173)
406 PF00448 SRP54: SRP54-type pro 97.9 6.8E-06 1.5E-10 61.3 2.8 93 64-169 84-182 (196)
407 COG1419 FlhF Flagellar GTP-bin 97.9 0.00017 3.6E-09 58.8 10.6 158 16-184 204-400 (407)
408 PRK11889 flhF flagellar biosyn 97.9 1.5E-05 3.2E-10 65.0 4.2 85 64-159 321-411 (436)
409 PRK00771 signal recognition pa 97.9 2.4E-05 5.2E-10 65.2 5.3 86 64-160 176-267 (437)
410 PF03266 NTPase_1: NTPase; In 97.8 6.6E-05 1.4E-09 54.6 6.7 136 17-165 1-162 (168)
411 KOG3859 Septins (P-loop GTPase 97.8 4.3E-05 9.2E-10 58.9 5.7 63 11-73 38-104 (406)
412 PRK05703 flhF flagellar biosyn 97.8 0.0002 4.4E-09 59.7 10.1 93 64-169 300-400 (424)
413 PRK14723 flhF flagellar biosyn 97.8 5.4E-05 1.2E-09 66.8 6.7 152 17-179 187-380 (767)
414 TIGR00959 ffh signal recogniti 97.8 3.8E-05 8.1E-10 63.9 5.0 86 64-160 183-274 (428)
415 PRK10867 signal recognition pa 97.7 5.2E-05 1.1E-09 63.1 5.1 86 64-160 184-275 (433)
416 PRK12723 flagellar biosynthesi 97.7 0.001 2.2E-08 54.7 12.3 103 64-179 255-365 (388)
417 TIGR02475 CobW cobalamin biosy 97.7 0.00025 5.4E-09 57.5 8.3 21 18-38 7-27 (341)
418 KOG2485 Conserved ATP/GTP bind 97.7 9.3E-05 2E-09 57.9 5.4 61 12-74 140-206 (335)
419 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00021 4.5E-09 41.6 5.5 44 87-131 13-58 (58)
420 PRK12726 flagellar biosynthesi 97.6 0.00032 6.9E-09 57.2 7.4 91 64-167 286-382 (407)
421 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00087 1.9E-08 49.2 8.9 23 17-39 27-49 (177)
422 PRK12724 flagellar biosynthesi 97.5 0.00088 1.9E-08 55.4 9.6 133 16-160 224-394 (432)
423 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00083 1.8E-08 43.5 7.9 69 18-100 2-71 (99)
424 KOG2484 GTPase [General functi 97.5 8.6E-05 1.9E-09 59.9 3.4 58 12-74 249-307 (435)
425 PF11111 CENP-M: Centromere pr 97.5 0.014 3.1E-07 42.1 14.1 141 11-176 11-151 (176)
426 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 50.4 3.0 22 17-38 1-22 (121)
427 PRK06731 flhF flagellar biosyn 97.5 0.00062 1.3E-08 53.3 7.5 133 16-159 76-245 (270)
428 COG0563 Adk Adenylate kinase a 97.5 0.0001 2.2E-09 54.1 2.9 23 16-38 1-23 (178)
429 COG0194 Gmk Guanylate kinase [ 97.4 9.1E-05 2E-09 54.0 2.4 24 16-39 5-28 (191)
430 PRK08118 topology modulation p 97.4 0.00013 2.7E-09 53.1 3.2 23 16-38 2-24 (167)
431 COG3640 CooC CO dehydrogenase 97.4 0.0022 4.7E-08 48.6 9.6 61 65-131 135-196 (255)
432 cd02042 ParA ParA and ParB of 97.4 0.00084 1.8E-08 44.6 6.8 82 18-111 2-84 (104)
433 COG0552 FtsY Signal recognitio 97.4 0.00026 5.7E-09 56.2 4.9 144 14-171 138-328 (340)
434 KOG0469 Elongation factor 2 [T 97.4 0.00087 1.9E-08 56.0 8.0 118 11-132 15-162 (842)
435 KOG0780 Signal recognition par 97.4 0.00011 2.5E-09 59.1 2.7 47 62-108 182-234 (483)
436 PRK07261 topology modulation p 97.4 0.00014 3.1E-09 53.0 3.1 22 17-38 2-23 (171)
437 COG0541 Ffh Signal recognition 97.4 0.00024 5.1E-09 58.3 4.6 85 64-159 183-273 (451)
438 PF13555 AAA_29: P-loop contai 97.4 0.00021 4.5E-09 42.6 3.0 21 17-37 25-45 (62)
439 COG1126 GlnQ ABC-type polar am 97.4 0.00022 4.8E-09 53.2 3.8 24 17-40 30-53 (240)
440 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.3E-09 51.0 2.8 21 18-38 2-22 (143)
441 cd00009 AAA The AAA+ (ATPases 97.3 0.0012 2.7E-08 45.9 7.4 24 16-39 20-43 (151)
442 cd02038 FleN-like FleN is a me 97.3 0.003 6.6E-08 44.4 9.3 106 19-132 4-109 (139)
443 PF03215 Rad17: Rad17 cell cyc 97.3 0.0021 4.5E-08 55.0 9.9 22 17-38 47-68 (519)
444 KOG1534 Putative transcription 97.3 0.00077 1.7E-08 50.1 5.9 23 15-37 3-25 (273)
445 COG1116 TauB ABC-type nitrate/ 97.3 0.00022 4.8E-09 54.3 3.0 23 18-40 32-54 (248)
446 cd03111 CpaE_like This protein 97.3 0.0015 3.3E-08 43.6 6.6 100 21-129 6-106 (106)
447 cd02019 NK Nucleoside/nucleoti 97.2 0.00034 7.4E-09 42.9 3.0 21 18-38 2-22 (69)
448 COG1136 SalX ABC-type antimicr 97.2 0.00036 7.8E-09 52.9 3.6 24 17-40 33-56 (226)
449 PF13521 AAA_28: AAA domain; P 97.2 0.00024 5.1E-09 51.4 2.6 22 17-38 1-22 (163)
450 PF00005 ABC_tran: ABC transpo 97.2 0.00028 6.1E-09 49.3 2.9 23 17-39 13-35 (137)
451 KOG3929 Uncharacterized conser 97.1 0.0011 2.5E-08 50.7 5.6 141 14-161 44-235 (363)
452 cd04178 Nucleostemin_like Nucl 97.1 0.0019 4.2E-08 47.1 6.6 44 89-134 1-44 (172)
453 PRK14737 gmk guanylate kinase; 97.1 0.00036 7.7E-09 51.7 2.8 24 16-39 5-28 (186)
454 PRK06217 hypothetical protein; 97.1 0.00047 1E-08 50.9 3.3 23 16-38 2-24 (183)
455 cd03110 Fer4_NifH_child This p 97.1 0.0042 9.1E-08 45.5 8.1 85 63-157 92-176 (179)
456 cd02036 MinD Bacterial cell di 97.1 0.012 2.5E-07 42.9 10.4 84 65-156 64-147 (179)
457 PF00004 AAA: ATPase family as 97.1 0.00051 1.1E-08 47.4 3.0 21 18-38 1-21 (132)
458 PRK03839 putative kinase; Prov 97.1 0.00049 1.1E-08 50.6 3.0 22 17-38 2-23 (180)
459 cd01131 PilT Pilus retraction 97.1 0.0022 4.7E-08 48.0 6.5 22 18-39 4-25 (198)
460 PRK01889 GTPase RsgA; Reviewed 97.1 0.0006 1.3E-08 55.7 3.7 24 17-40 197-220 (356)
461 COG3840 ThiQ ABC-type thiamine 97.1 0.00055 1.2E-08 49.9 3.0 24 17-40 27-50 (231)
462 PRK10078 ribose 1,5-bisphospho 97.0 0.00052 1.1E-08 50.8 3.0 23 17-39 4-26 (186)
463 PF05621 TniB: Bacterial TniB 97.0 0.0036 7.8E-08 49.4 7.7 25 16-40 62-86 (302)
464 smart00382 AAA ATPases associa 97.0 0.00065 1.4E-08 46.9 3.3 26 16-41 3-28 (148)
465 TIGR02322 phosphon_PhnN phosph 97.0 0.00056 1.2E-08 50.2 3.0 22 17-38 3-24 (179)
466 COG1120 FepC ABC-type cobalami 97.0 0.00055 1.2E-08 52.9 3.0 21 18-38 31-51 (258)
467 PRK14738 gmk guanylate kinase; 97.0 0.001 2.3E-08 50.0 4.4 27 13-39 11-37 (206)
468 cd00071 GMPK Guanosine monopho 97.0 0.00063 1.4E-08 47.8 3.0 21 18-38 2-22 (137)
469 COG3839 MalK ABC-type sugar tr 97.0 0.0007 1.5E-08 54.4 3.6 23 18-40 32-54 (338)
470 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0022 4.8E-08 44.6 5.7 23 17-39 24-46 (133)
471 cd03238 ABC_UvrA The excision 97.0 0.00067 1.5E-08 49.7 3.2 21 16-36 22-42 (176)
472 TIGR00235 udk uridine kinase. 97.0 0.00091 2E-08 50.4 4.0 24 15-38 6-29 (207)
473 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00066 1.4E-08 45.3 2.8 20 17-36 17-36 (107)
474 PF03205 MobB: Molybdopterin g 97.0 0.00069 1.5E-08 47.7 3.0 22 17-38 2-23 (140)
475 PRK10751 molybdopterin-guanine 97.0 0.00092 2E-08 48.7 3.7 24 15-38 6-29 (173)
476 PF13238 AAA_18: AAA domain; P 97.0 0.00065 1.4E-08 46.6 2.8 21 18-38 1-21 (129)
477 KOG2423 Nucleolar GTPase [Gene 97.0 0.00029 6.3E-09 57.0 1.0 58 12-73 304-361 (572)
478 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0007 1.5E-08 52.1 3.0 21 17-37 32-52 (254)
479 PRK14530 adenylate kinase; Pro 96.9 0.00077 1.7E-08 51.1 3.2 22 16-37 4-25 (215)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.0008 1.7E-08 51.0 3.2 23 17-39 32-54 (218)
481 TIGR03263 guanyl_kin guanylate 96.9 0.00081 1.8E-08 49.3 3.0 23 17-39 3-25 (180)
482 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0009 2E-08 50.4 3.2 23 17-39 29-51 (211)
483 TIGR00960 3a0501s02 Type II (G 96.9 0.00089 1.9E-08 50.7 3.2 23 17-39 31-53 (216)
484 PRK13949 shikimate kinase; Pro 96.9 0.00093 2E-08 48.7 3.2 22 17-38 3-24 (169)
485 cd01130 VirB11-like_ATPase Typ 96.9 0.00094 2E-08 49.4 3.2 24 16-39 26-49 (186)
486 cd02023 UMPK Uridine monophosp 96.9 0.00085 1.8E-08 50.1 3.0 21 18-38 2-22 (198)
487 COG3638 ABC-type phosphate/pho 96.9 0.00087 1.9E-08 50.8 2.9 21 17-37 32-52 (258)
488 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00095 2.1E-08 50.1 3.2 23 17-39 28-50 (205)
489 cd03261 ABC_Org_Solvent_Resist 96.9 0.00096 2.1E-08 51.2 3.2 23 17-39 28-50 (235)
490 TIGR01166 cbiO cobalt transpor 96.9 0.001 2.2E-08 49.3 3.2 23 17-39 20-42 (190)
491 cd03292 ABC_FtsE_transporter F 96.9 0.001 2.2E-08 50.3 3.2 23 17-39 29-51 (214)
492 TIGR02673 FtsE cell division A 96.9 0.001 2.2E-08 50.3 3.2 23 17-39 30-52 (214)
493 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00094 2E-08 49.2 3.0 22 16-37 4-25 (188)
494 COG1117 PstB ABC-type phosphat 96.9 0.0009 2E-08 50.0 2.8 22 18-39 36-57 (253)
495 TIGR03608 L_ocin_972_ABC putat 96.8 0.0011 2.3E-08 49.8 3.2 23 17-39 26-48 (206)
496 cd03269 ABC_putative_ATPase Th 96.8 0.0011 2.3E-08 50.0 3.2 23 17-39 28-50 (210)
497 KOG0446 Vacuolar sorting prote 96.8 0.00041 8.8E-09 60.7 1.1 69 64-134 132-213 (657)
498 PRK14531 adenylate kinase; Pro 96.8 0.0011 2.3E-08 49.0 3.2 23 16-38 3-25 (183)
499 cd03265 ABC_DrrA DrrA is the A 96.8 0.0011 2.3E-08 50.4 3.3 23 17-39 28-50 (220)
500 cd03259 ABC_Carb_Solutes_like 96.8 0.0011 2.3E-08 50.2 3.2 23 17-39 28-50 (213)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-40 Score=238.01 Aligned_cols=188 Identities=59% Similarity=1.017 Sum_probs=172.9
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
....+|.+||+|+|.+|+|||.|+.++.+..+...+..|.+.++..+++..++..++++||||+|+++|+++...+|+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEecCCCCCHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVE 167 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 167 (216)
|++|+|||+++.++|..+..|+.++..+...+.|.++|+||+|+.+ .+.++.++++.|+..++++ ++++||+++.+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999999999999999999999999999975 6789999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCC--CCccccccC
Q 027949 168 EVFFSIARDIKQRLADTDSRA--EPQTIKINQ 197 (216)
Q Consensus 168 ~l~~~l~~~i~~~~~~~~~~~--~~~~~~~~~ 197 (216)
++|..|...+.++........ +.+.++.+.
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~ 193 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKG 193 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence 999999999988766655444 344444443
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-38 Score=228.19 Aligned_cols=180 Identities=77% Similarity=1.222 Sum_probs=171.2
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.+||+++|.+|||||+++.++....+...+..+.+.++...++..++..+.+++|||+|+++++.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+++|||+++..+|+.+..|+..+..+.+.+.|.++||||+|+.. .+.+..+.++.++.++|+.++++||++|.||++.|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999998999999999999965 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCc
Q 027949 171 FSIARDIKQRLADTDSRAEPQ 191 (216)
Q Consensus 171 ~~l~~~i~~~~~~~~~~~~~~ 191 (216)
..|.+.++++....+.+..++
T Consensus 167 ~~La~~i~~k~~~~~~~~~~~ 187 (207)
T KOG0078|consen 167 LSLARDILQKLEDAELEASNN 187 (207)
T ss_pred HHHHHHHHhhcchhhhccccc
Confidence 999999999877766555443
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=225.28 Aligned_cols=196 Identities=43% Similarity=0.730 Sum_probs=172.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+|+|..++|||||+-++....|.....+|.+--+...++..++..+++.||||+|+++|..+.+.|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||+++.++|..++.|+..+.+..+++.-+.|||||+||.+ .+.+..+++..++...+..|+++||++|.|++++|..
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 999999999999999999999999887788888999999975 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCC--ccccccCCCCccchhhhccCCCCcC
Q 027949 173 IARDIKQRLADTDSRAEP--QTIKINQPDQAGGAAQAAQRSACCG 215 (216)
Q Consensus 173 l~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
|.+.+.....+....... .++...+. + +.+..++||.
T Consensus 162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~---~---~~~~~~~~C~ 200 (200)
T KOG0092|consen 162 IAEKLPCSDPQERQGLPNRRQGVDLNSN---Q---EPARPSGCCA 200 (200)
T ss_pred HHHhccCccccccccccccccceecccC---C---CCcCcCCcCC
Confidence 999999877666542222 22322222 1 4555667774
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-37 Score=219.60 Aligned_cols=176 Identities=38% Similarity=0.641 Sum_probs=161.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
-..+||+|+|..++||||||.+++...+...|.+|.+.++...++.+.++.+.+++|||+|+++|+.+...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
+|||+++..+|+...+|+..+...+.. +.-+++|+||.||.+ .+.+..++....++++++.|+++||+.|+||.++|.
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 999999999999999999999887765 477788999999976 577888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCC
Q 027949 172 SIARDIKQRLADTDSRAE 189 (216)
Q Consensus 172 ~l~~~i~~~~~~~~~~~~ 189 (216)
.|...+......+....+
T Consensus 179 rIaa~l~~~~~~~~~~~~ 196 (221)
T KOG0094|consen 179 RIAAALPGMEVLEILSKQ 196 (221)
T ss_pred HHHHhccCcccccccccc
Confidence 988888877654444443
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.7e-37 Score=210.46 Aligned_cols=202 Identities=42% Similarity=0.731 Sum_probs=173.2
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
...+.+||+++|.+|+|||||+-++....+......+.+.++....+.+++..+++.||||+|+++|+.+...|++.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
+|+|||++.+++|..+..|++++..+.. ++.-.++|+||+|-.+ ++.++.++...|++++++-|+++||++.+|+...
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999988764 4566789999999643 6889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCcCC
Q 027949 170 FFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (216)
|+.|++.|++-..--+......+..+-..+..... ..+++||+|
T Consensus 166 FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~---~~~g~~Cs~ 209 (209)
T KOG0080|consen 166 FEELVEKIIETPSLWEEGNSSAGLDIASDPDGEAS---AHQGGCCSC 209 (209)
T ss_pred HHHHHHHHhcCcchhhccCCccccccccCCCcccc---cccCCccCC
Confidence 99999999986544443334444444432222111 234669987
No 6
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-36 Score=227.05 Aligned_cols=195 Identities=34% Similarity=0.675 Sum_probs=162.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888877778887 7789999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 169 (216)
||+++++++..+..|+..+.... ....|++||+||+|+.+ ......+++..++...+ +.++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999988876532 24689999999999964 35567788999999998 69999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949 170 FFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (216)
|++|++.+...........++....+-...+ ..++++.++||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQ---TTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCccccccccc---ceeccccCCCC
Confidence 9999999988766655555544333333322 33444555888
No 7
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.2e-35 Score=221.30 Aligned_cols=196 Identities=53% Similarity=0.884 Sum_probs=162.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.++|+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..++++++++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999888788888887887788888888889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||+++++++..+..|+..+.... ...|++||+||+|+.+ ......+++..++...++.++++||++|.|++++|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 9999999999999999999887654 3689999999999864 3445677788888888999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949 173 IARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214 (216)
Q Consensus 173 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (216)
|.+.++....+... ...++++.+..--+...+.++.||
T Consensus 162 l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 162 ITELVLRAKKDNLA----KQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHhhhccCc----ccccCCccccCccchhccccccCC
Confidence 99999876444422 223333334444444445566676
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.2e-35 Score=220.84 Aligned_cols=167 Identities=45% Similarity=0.894 Sum_probs=150.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+.|+|+|..|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888888888888888999998999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++++|..+..|+..+......+.|++||+||+|+.+ .+.+...++..++..+ ++.|++|||++|.|++++|.+|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988777666799999999999964 4667778888888875 78999999999999999999999
Q ss_pred HHHHHHhhc
Q 027949 175 RDIKQRLAD 183 (216)
Q Consensus 175 ~~i~~~~~~ 183 (216)
+.+......
T Consensus 160 ~~~~~~~~~ 168 (202)
T cd04120 160 DDILKKMPL 168 (202)
T ss_pred HHHHHhCcc
Confidence 998775433
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.5e-35 Score=222.72 Aligned_cols=172 Identities=49% Similarity=0.885 Sum_probs=155.1
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35678999999999999999999999998887788888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887666899999999999864 34566778888888889999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027949 171 FSIARDIKQRLAD 183 (216)
Q Consensus 171 ~~l~~~i~~~~~~ 183 (216)
++|++.+.+....
T Consensus 167 ~~l~~~i~~~~~~ 179 (216)
T PLN03110 167 QTILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999886544
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=214.25 Aligned_cols=176 Identities=49% Similarity=0.867 Sum_probs=168.1
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
+.+.+|.+||+++|.+++|||-|+.++..++|.....+|.+.++....+.++++.++.+||||+|+++|+.....+++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
.++++|||++...+|+.+..|+.+++.+.+.++++++|+||+||.+ .+.+..++++.++...+..++++||.++.++++
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 9999999999999999999999999999989999999999999976 788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 027949 169 VFFSIARDIKQRLADTD 185 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~~ 185 (216)
.|..++..|+....+..
T Consensus 167 aF~~~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 167 AFERVLTEIYKIVSKKQ 183 (222)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998776653
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.3e-35 Score=217.29 Aligned_cols=167 Identities=50% Similarity=0.843 Sum_probs=151.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.+||+|+|..|+|||||+.++....+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999888877778888788778888899899999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||++++.+|..+..|+..+.... .+.|++||+||.|+.+ .+.+..++++.+++.+++.|++|||++|.|++++|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999997765 4799999999999965 456778899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027949 172 SIARDIKQR 180 (216)
Q Consensus 172 ~l~~~i~~~ 180 (216)
+|++.+..+
T Consensus 161 ~l~~~i~~~ 169 (189)
T cd04121 161 ELARIVLMR 169 (189)
T ss_pred HHHHHHHHh
Confidence 999988754
No 12
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=209.70 Aligned_cols=177 Identities=50% Similarity=0.894 Sum_probs=166.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
..+.+|++++|..|+|||.|+.+++.+.|.+.+..|.+.++-...+++++..++++||||+|++.|++....|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||+++.++|..+..|+..+.+...++..++|++||+||.. .+++..++.+.|+++++..++++||++++|+++.|.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 9999999999999999999999999888999999999999965 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCC
Q 027949 172 SIARDIKQRLADTDSRAE 189 (216)
Q Consensus 172 ~l~~~i~~~~~~~~~~~~ 189 (216)
.+...+++.....-.+..
T Consensus 162 nta~~Iy~~~q~g~~~~~ 179 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDDI 179 (216)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999998776544443
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=210.51 Aligned_cols=172 Identities=41% Similarity=0.717 Sum_probs=159.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
+...+||+++|.+|+|||||++++.+.++...+..+.+.++....+.++++.++++||||+|+++|.++...|++.+|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-CeEEEEecCCCCC
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESK-RAVPTSKGQALADEYG-IKFFETSAKTNLN 165 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 165 (216)
+++||++++.+|+.+..|..++..+.. ...|++|+|||+|+.+.. +.++...++.+|...| ++||++||+.+.+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999877654 468999999999997633 7899999999999887 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 027949 166 VEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~~~ 183 (216)
+++.|+.+.+.++..-..
T Consensus 166 V~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 166 VDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 999999999999887543
No 14
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.6e-34 Score=214.28 Aligned_cols=167 Identities=54% Similarity=0.981 Sum_probs=147.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 35667777677666778888889999999999999988888999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
||+++++++..+..|+..+......+.|+++|+||+|+.. .+....+++..++..++++|+++||++|.|++++|.+|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999998887666799999999999864 344566778888888899999999999999999999999
Q ss_pred HHHHHHhhc
Q 027949 175 RDIKQRLAD 183 (216)
Q Consensus 175 ~~i~~~~~~ 183 (216)
+.+.+...+
T Consensus 160 ~~~~~~~~~ 168 (191)
T cd04112 160 KELKHRKYE 168 (191)
T ss_pred HHHHHhccc
Confidence 999887544
No 15
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.4e-34 Score=217.54 Aligned_cols=188 Identities=31% Similarity=0.552 Sum_probs=150.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++....+.. +.++.+.++.... + ..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~--~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ--W--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE--e--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 4566554443322 2 3478999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCccChHHHHHHHHHhC-----
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE------------------SKRAVPTSKGQALADEYG----- 152 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 152 (216)
|++++++|..+..|+..+......+.|++||+||+|+.+ ..+.+..+++..++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988877766556789999999999864 145677889999998876
Q ss_pred ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949 153 ---------IKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214 (216)
Q Consensus 153 ---------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (216)
++|++|||++|.||+++|.++++.+++...+...+.....-.+..+ .-|+.|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLP------NPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC------CcccCCCCCC
Confidence 6899999999999999999999999886666554333222222222 2456778888
No 16
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=214.20 Aligned_cols=166 Identities=40% Similarity=0.658 Sum_probs=143.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 348999999999999999999999888777777766444 4567788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...++..++..++++++++||++|.|++++|.+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 999999999999999998887654 34789999999999854 3445667778888888899999999999999999999
Q ss_pred HHHHHHHHh
Q 027949 173 IARDIKQRL 181 (216)
Q Consensus 173 l~~~i~~~~ 181 (216)
|++.+.+..
T Consensus 162 l~~~l~~~~ 170 (189)
T PTZ00369 162 LVREIRKYL 170 (189)
T ss_pred HHHHHHHHh
Confidence 999887653
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.7e-34 Score=215.04 Aligned_cols=166 Identities=34% Similarity=0.619 Sum_probs=142.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888776777765443 3456678888899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
+++++++..+..|+..+..... .+.|+++|+||+|+.+ ...+...+...++..++++++++||++|.|++++|.+|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999888866432 4689999999999864 34566677788888889999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 027949 174 ARDIKQRLADT 184 (216)
Q Consensus 174 ~~~i~~~~~~~ 184 (216)
++.+.+++...
T Consensus 159 ~~~l~~~~~~~ 169 (190)
T cd04144 159 VRALRQQRQGG 169 (190)
T ss_pred HHHHHHhhccc
Confidence 99888776664
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.3e-34 Score=214.38 Aligned_cols=170 Identities=45% Similarity=0.808 Sum_probs=149.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.+||+|+|.+|+|||||++++++..+...+.++.+.+.....+.+ ++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777788887777777776 4667899999999999999989999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||+++++++..+..|+..+..... ...|++||+||+|+.+ ...+..++...++..++++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998876543 3577899999999865 4556777888999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 027949 173 IARDIKQRLADTD 185 (216)
Q Consensus 173 l~~~i~~~~~~~~ 185 (216)
|.+.+.++.....
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999988876654
No 19
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.5e-34 Score=207.21 Aligned_cols=164 Identities=48% Similarity=0.862 Sum_probs=147.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998887888877777777788888889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999888776656789999999999965 345677888889998899999999999999999999999
Q ss_pred HHHHH
Q 027949 175 RDIKQ 179 (216)
Q Consensus 175 ~~i~~ 179 (216)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88754
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=9.3e-34 Score=206.94 Aligned_cols=165 Identities=79% Similarity=1.280 Sum_probs=149.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.+||+|+|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 56999999999999999999999999988888888888877888888888999999999999988888899999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998876666799999999999975 34556777888888889999999999999999999999
Q ss_pred HHHHHH
Q 027949 174 ARDIKQ 179 (216)
Q Consensus 174 ~~~i~~ 179 (216)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998865
No 21
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5e-35 Score=199.14 Aligned_cols=168 Identities=58% Similarity=0.988 Sum_probs=159.6
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++.+|+|.+|+|||+|+.++....|...|..+.+.+...+++.++|..+++.|||++|++.|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||+++.++|..+..|+..+...++ ..|-++|+||.|.++ .+.+..++++.|+...++.+|++||+++++++..|.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999999999887 689999999999865 778899999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027949 172 SIARDIKQRL 181 (216)
Q Consensus 172 ~l~~~i~~~~ 181 (216)
-|.+.+.+..
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 22
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-33 Score=208.88 Aligned_cols=169 Identities=50% Similarity=0.860 Sum_probs=150.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888887887788888888899999999999999989999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+........|+++|+||+|+.+ ...+..+.+..++...+++++++||++|.|++++|.+|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998877666789999999999864 3456677788888888899999999999999999999999
Q ss_pred HHHHHhhccc
Q 027949 176 DIKQRLADTD 185 (216)
Q Consensus 176 ~i~~~~~~~~ 185 (216)
.+..+...+.
T Consensus 160 ~~~~~~~~~~ 169 (188)
T cd04125 160 LIIKRLEEQE 169 (188)
T ss_pred HHHHHhhcCc
Confidence 9987655544
No 23
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.7e-33 Score=209.10 Aligned_cols=168 Identities=35% Similarity=0.645 Sum_probs=144.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||++++....+.. .+.++.+..+....+..++..+.+.+||++|.+.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5777777767677788899889999999999999998888899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK---RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ..+...++..++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988998886653 368999999999985422 33445667788888889999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 027949 172 SIARDIKQRLADT 184 (216)
Q Consensus 172 ~l~~~i~~~~~~~ 184 (216)
+|.+.+.+.....
T Consensus 160 ~i~~~~~~~~~~~ 172 (193)
T cd04118 160 KVAEDFVSRANNQ 172 (193)
T ss_pred HHHHHHHHhcccc
Confidence 9999998765544
No 24
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-33 Score=208.38 Aligned_cols=165 Identities=25% Similarity=0.551 Sum_probs=146.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+++|.+|+|||||++++....+...+.|+.+..+ ...+..++..+.+.||||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887544 456788898999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEe
Q 027949 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.+|..+ ..|+..+....+ +.|++||+||+||.+. .+.+..+++..++..+++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 789999887654 6999999999998542 245788999999999995 999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHH
Q 027949 160 AKTNLN-VEEVFFSIARDIKQ 179 (216)
Q Consensus 160 a~~~~g-i~~l~~~l~~~i~~ 179 (216)
|++|+| |+++|..+++.++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999987543
No 25
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=210.29 Aligned_cols=177 Identities=50% Similarity=0.868 Sum_probs=155.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999988877778888788778888888888999999999999988889999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||+++++++..+..|+..+........|+++|+||+|+.+ ......++...+++.++++++++||+++.|++++|.
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888766556799999999999865 345677888899999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCC
Q 027949 172 SIARDIKQRLADTDSRAE 189 (216)
Q Consensus 172 ~l~~~i~~~~~~~~~~~~ 189 (216)
++++.++++..+...+..
T Consensus 162 ~l~~~~~~~~~~~~~~~~ 179 (210)
T PLN03108 162 KTAAKIYKKIQDGVFDVS 179 (210)
T ss_pred HHHHHHHHHhhhcccccc
Confidence 999999886554443333
No 26
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-34 Score=194.34 Aligned_cols=176 Identities=53% Similarity=0.959 Sum_probs=165.4
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+.++.+|++|+|...+|||||+.++++..+...+..+.+.++...++.-....+++++|||.|++.|+.+...+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34677889999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+++|++||+++.++|..+..|...+..++-.+.|+++|+||+|+.+ ++.+..+..+.++.++|..||++||+.+.++++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 9999999999999999999999999988888999999999999965 688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 027949 169 VFFSIARDIKQRLADTD 185 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~~ 185 (216)
+|+.++..+.+...++.
T Consensus 174 ~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 174 VFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999998877654
No 27
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.7e-33 Score=212.42 Aligned_cols=164 Identities=34% Similarity=0.573 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889998888888888754 468999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
||+++++++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+....++..++++++++||++|+|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999998877643 3468999999999964 355677788899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027949 172 SIARDIKQR 180 (216)
Q Consensus 172 ~l~~~i~~~ 180 (216)
+|++.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999998875
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3e-33 Score=205.27 Aligned_cols=160 Identities=33% Similarity=0.675 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||+|+.++..+.+...+.++.+..+ ...+..++..+.+.||||+|+++|..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887554 455778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949 96 DVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTNL 164 (216)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
|++++++|..+ ..|+..+..... +.|++||+||+|+.+.. ..+..+++..+++.+++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689998876654 79999999999995432 24778899999999997 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDI 177 (216)
Q Consensus 165 gi~~l~~~l~~~i 177 (216)
||+++|..+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.3e-33 Score=204.93 Aligned_cols=165 Identities=32% Similarity=0.586 Sum_probs=145.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 7999999999999999999999998877777776434 445778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+ ...+..++...+++..+++|++|||++|.|++++|+||+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999888777643 35799999999999865 355677888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q 027949 175 RDIKQRLA 182 (216)
Q Consensus 175 ~~i~~~~~ 182 (216)
+.+.+..+
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 98887543
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.1e-33 Score=210.36 Aligned_cols=166 Identities=22% Similarity=0.475 Sum_probs=147.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+|+|..|||||+|++++....+...+.++.+..+. ..+..++..+.+.||||+|++.|..+...+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 35689999999999999999999999999888888875553 45788899999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEe
Q 027949 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++++|..+ ..|+..+....+ +.|++||+||+||.+. ...+..++++.++..+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999985 789998887654 6899999999998542 256788899999999998 699999
Q ss_pred cCCCC-CHHHHHHHHHHHHHHH
Q 027949 160 AKTNL-NVEEVFFSIARDIKQR 180 (216)
Q Consensus 160 a~~~~-gi~~l~~~l~~~i~~~ 180 (216)
|++|+ |++++|..++..+++.
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999998875
No 31
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.7e-33 Score=202.39 Aligned_cols=163 Identities=55% Similarity=0.963 Sum_probs=145.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988878888887777777777888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+........|+++|+||+|+.+ .+....+....++..++++++++||++|.|++++|++|++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998776656789999999999965 3445667778888888999999999999999999999998
Q ss_pred HHHH
Q 027949 176 DIKQ 179 (216)
Q Consensus 176 ~i~~ 179 (216)
.+..
T Consensus 161 ~~~~ 164 (165)
T cd01865 161 IICD 164 (165)
T ss_pred HHHh
Confidence 7653
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=5.6e-33 Score=202.55 Aligned_cols=164 Identities=68% Similarity=1.125 Sum_probs=147.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988877888888778778888888889999999999999988899999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.+|.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999998776655789999999999864 344667788889988899999999999999999999999
Q ss_pred HHHHH
Q 027949 175 RDIKQ 179 (216)
Q Consensus 175 ~~i~~ 179 (216)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 88753
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7e-33 Score=206.45 Aligned_cols=163 Identities=31% Similarity=0.618 Sum_probs=141.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 38999999999999999999999999888888887544 34567788889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEecC
Q 027949 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK 161 (216)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (216)
||++++++|+.+. .|+..+.... .+.|++||+||.||.+.. ..+..+++..++..++ +.|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5887776654 479999999999996432 2355678888999888 699999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~ 179 (216)
+|+|++++|.+|++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.5e-33 Score=204.55 Aligned_cols=162 Identities=25% Similarity=0.545 Sum_probs=143.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
++||+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876554 35678888899999999999999999999999999999999
Q ss_pred EeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEecC
Q 027949 95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK 161 (216)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (216)
||++++++|..+ ..|+..+....+ ..|+++|+||+||.+. ...+..+++..++..+++ .|++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789998887764 7899999999999541 235788899999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027949 162 TNLN-VEEVFFSIARDIK 178 (216)
Q Consensus 162 ~~~g-i~~l~~~l~~~i~ 178 (216)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 35
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=193.37 Aligned_cols=173 Identities=47% Similarity=0.874 Sum_probs=160.5
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
+..++.+||+++|+.|+|||.|++++...-+++....+.+.++...+++++++.+++.||||.|+++|+++...+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 45678999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|||++...+|+-+..|+.++.++.....-.++|+||.|+.+ ++++..+..++|+.....-|+++||++.++++.+
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999999999999877777799999999864 5678888899999998899999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 027949 170 FFSIARDIKQRLAD 183 (216)
Q Consensus 170 ~~~l~~~i~~~~~~ 183 (216)
|..+.-.+......
T Consensus 161 f~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 161 FLDLACRLISEARQ 174 (213)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888775444
No 36
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.8e-33 Score=201.21 Aligned_cols=160 Identities=55% Similarity=0.983 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
++|+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888887788888888899999999999999988999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+........|+++|+||.|+.+ .+.+..+++..+++..+++|+++||++|.|++++|.+|.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999988776655799999999999854 4556678888999888999999999999999999999986
Q ss_pred H
Q 027949 176 D 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 37
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.7e-33 Score=204.56 Aligned_cols=163 Identities=28% Similarity=0.561 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|..|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899888887788888998899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+++++++..+..|+..+........| ++|+||+|+.+. ......++...++...+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776554566 678999998531 112224567778888889999999999999999999
Q ss_pred HHHHHHHH
Q 027949 172 SIARDIKQ 179 (216)
Q Consensus 172 ~l~~~i~~ 179 (216)
+|.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998865
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1e-32 Score=203.68 Aligned_cols=167 Identities=51% Similarity=0.934 Sum_probs=146.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 82 (216)
++.+||+++|++|||||||++++.+..+...+.++.+.+.....+.+. +..+.+.+||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 367999999999999999999999999988888888877766666553 4568999999999999999999
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......+++..++...+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999999998887653 34689999999999865 34566778899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~ 180 (216)
+|.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 39
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.4e-32 Score=208.03 Aligned_cols=166 Identities=25% Similarity=0.518 Sum_probs=143.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++....+...+.|+.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888875553 56788899999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++++|..+. .|...+.... .+.|++||+||+||.+.. ..+..++...+++..++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 5776665544 479999999999995421 13667889999999995 999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHhhc
Q 027949 163 NLN-VEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 163 ~~g-i~~l~~~l~~~i~~~~~~ 183 (216)
+++ |+++|..++...+.....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 985 999999999988775443
No 40
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=195.52 Aligned_cols=176 Identities=47% Similarity=0.794 Sum_probs=158.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.|.++++|+|.+-+|||+|++.++...+.....|+.+.++..+.++. .|..+++++|||+|++.|+++...+++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 47799999999999999999999999999999999999988888777 57779999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|||+++.++|+++..|+.+..-+.. ...-+++|++|+||. ..+.+..++++.++..+|+.|+++||++|.|+++.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 999999999999999999988765543 334457789999996 47889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCC
Q 027949 170 FFSIARDIKQRLADTDSRAE 189 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~~~~~~ 189 (216)
|..|.+.+.....+.+-..+
T Consensus 165 F~mlaqeIf~~i~qGeik~e 184 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLE 184 (213)
T ss_pred HHHHHHHHHHHHhcCceeee
Confidence 99999999998887554433
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=9.6e-33 Score=201.26 Aligned_cols=162 Identities=35% Similarity=0.756 Sum_probs=146.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++++..+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899888888888888888899999999999999988999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
|+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999998877653 4689999999999864 34566777778888888999999999999999999
Q ss_pred HHHHHHHH
Q 027949 171 FSIARDIK 178 (216)
Q Consensus 171 ~~l~~~i~ 178 (216)
++|++.++
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998875
No 42
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.5e-32 Score=200.05 Aligned_cols=163 Identities=53% Similarity=0.921 Sum_probs=146.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||.+.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999887888888888888888888888899999999999999889999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998887766799999999999865 34556777888888888999999999999999999999
Q ss_pred HHHH
Q 027949 174 ARDI 177 (216)
Q Consensus 174 ~~~i 177 (216)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8775
No 43
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.1e-32 Score=207.83 Aligned_cols=166 Identities=29% Similarity=0.565 Sum_probs=145.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+|+|.+|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56699999999999999999999999988888888888887777777877899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||+++++++..+..|+..+.... .+.|++||+||+|+.+ .....+.+ .++...++.|+++||++|.|++++|.|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 9999999999999999999988765 4799999999999853 23334444 677778899999999999999999999
Q ss_pred HHHHHHHHhh
Q 027949 173 IARDIKQRLA 182 (216)
Q Consensus 173 l~~~i~~~~~ 182 (216)
|++.+.+..+
T Consensus 167 l~~~~~~~~~ 176 (219)
T PLN03071 167 LARKLAGDPN 176 (219)
T ss_pred HHHHHHcCcc
Confidence 9999876533
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.5e-32 Score=199.57 Aligned_cols=166 Identities=52% Similarity=0.933 Sum_probs=149.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
.+.+||+|+|.+|+|||||++++.+..+...+.++.+.+.....+..++....+.+||++|.+.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46699999999999999999999999888777788888887888888888889999999999999888889999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||+++++++..+..|+..+......+.|+++|+||.|+.+ ......+++..++...++.++++||+++.|++++|.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999998876656799999999999864 3456777888888888999999999999999999999
Q ss_pred HHHHHHH
Q 027949 173 IARDIKQ 179 (216)
Q Consensus 173 l~~~i~~ 179 (216)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988764
No 45
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=193.95 Aligned_cols=175 Identities=34% Similarity=0.699 Sum_probs=160.1
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...+.+.+||+++|.--+|||||+-++....|......+..-.+....+.+.+....+.||||+|++.|..+-+.|++.+
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34567889999999999999999999999999877777776677778888888889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+++++|||++|.++|..++.|..++.......+-+++|+||+||.+ ++.+..+++..++..-|..|+++||+++.||.+
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 9999999999999999999999999998887888999999999964 678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027949 169 VFFSIARDIKQRLADT 184 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~ 184 (216)
+|+.|...++++....
T Consensus 166 lFe~Lt~~MiE~~s~~ 181 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQR 181 (218)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999988876443
No 46
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-32 Score=203.02 Aligned_cols=167 Identities=32% Similarity=0.609 Sum_probs=141.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||++++.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887777777655433 35554 6778999999999999998888899999999999
Q ss_pred EeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q 027949 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEEV 169 (216)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 169 (216)
||+++++++..+.. |+..+.... .+.|+++|+||+|+.+.. ..+...++..++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999864 877776543 478999999999985422 24567788889999987 9999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 027949 170 FFSIARDIKQRLADT 184 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~ 184 (216)
|.++++.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998765444
No 47
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-33 Score=189.92 Aligned_cols=189 Identities=46% Similarity=0.756 Sum_probs=175.6
Q ss_pred cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
|.+..++.+|++|+|+.|+|||.|++++..+.+......+.+.++..+.+.+.+..++++||||.|++.|++..+.+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
+-+.++|||+++.++|..+..|+..+.-..++++-+++++||.||.+ .+.+...++..|+.+..+.+.++||.+|++++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 99999999999999999999999999888888888899999999965 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccC
Q 027949 168 EVFFSIARDIKQRLADTDSRAEPQTIKINQ 197 (216)
Q Consensus 168 ~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 197 (216)
+.|-...+.|+.+.+..+.+++..+.-|+.
T Consensus 161 EaFl~c~~tIl~kIE~GElDPer~gsGIQY 190 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDPERMGSGIQY 190 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHccccccc
Confidence 999999999999999988877766655554
No 48
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.5e-32 Score=197.46 Aligned_cols=161 Identities=42% Similarity=0.833 Sum_probs=151.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998899998888889999999999999999999999999888899999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
+++++++..+..|+..+....+...|++||+||.|+.+ .+.+..++++.++..++.+|+++||+++.|+.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999988876799999999999865 56788889999999999999999999999999999999998
Q ss_pred HH
Q 027949 177 IK 178 (216)
Q Consensus 177 i~ 178 (216)
++
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-32 Score=197.58 Aligned_cols=162 Identities=49% Similarity=0.896 Sum_probs=143.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.+||+|+|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887777887777777888888888899999999999998889999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....+.+..+++..+. .++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999998776666799999999999865 345566778888888875 7899999999999999999
Q ss_pred HHHH
Q 027949 173 IARD 176 (216)
Q Consensus 173 l~~~ 176 (216)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=6.3e-32 Score=197.74 Aligned_cols=163 Identities=37% Similarity=0.701 Sum_probs=143.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899998888877888888888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
+++++++..+..|+..+... .+...|+++|+||+|+.+... ....+++..++..++.+++++||++|.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999887654 334578899999999854322 2345667778888889999999999999999999999
Q ss_pred HHHHH
Q 027949 175 RDIKQ 179 (216)
Q Consensus 175 ~~i~~ 179 (216)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.1e-32 Score=198.34 Aligned_cols=160 Identities=28% Similarity=0.573 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999988788888775553 45677888899999999999999998999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (216)
|+++++++..+. .|+..+.... .+.|++||+||+|+.+. .+.+..+++..+++..+ +.|+++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999997 4888876654 36899999999998542 14566778888888887 6999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDI 177 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i 177 (216)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 52
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1e-31 Score=195.97 Aligned_cols=160 Identities=32% Similarity=0.675 Sum_probs=140.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|||||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888778888887777777777888899999999999999888889999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+..... +.|+++|+||+|+.+ .... .....++...++.++++||++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 99999999999999999987765 799999999999863 2222 3345566677789999999999999999999998
Q ss_pred HHHH
Q 027949 176 DIKQ 179 (216)
Q Consensus 176 ~i~~ 179 (216)
.+.+
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8875
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.9e-32 Score=195.77 Aligned_cols=160 Identities=50% Similarity=0.855 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988878888887777778888888899999999999999888999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...++.++++||+++.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999888776666899999999999865 4556778888899999999999999999999999999987
Q ss_pred H
Q 027949 176 D 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1e-31 Score=195.28 Aligned_cols=163 Identities=59% Similarity=1.021 Sum_probs=146.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888888888888888888889999999999999988999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++..++++++++|+++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999988877656899999999999854 3455677788888888999999999999999999999998
Q ss_pred HHHH
Q 027949 176 DIKQ 179 (216)
Q Consensus 176 ~i~~ 179 (216)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 55
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=9.9e-32 Score=195.18 Aligned_cols=160 Identities=41% Similarity=0.728 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||++++....+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888766666665 444566778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++|.+|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887653 34789999999999865 344566677778888889999999999999999999998
Q ss_pred HHH
Q 027949 175 RDI 177 (216)
Q Consensus 175 ~~i 177 (216)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 56
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.3e-31 Score=199.37 Aligned_cols=162 Identities=32% Similarity=0.583 Sum_probs=137.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 799999999999999999999998877777776554 3456677878999999999999999999999999999999999
Q ss_pred CCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHhC-CeEEEEecCCC
Q 027949 97 VTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTN 163 (216)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (216)
++++++|..+. .|+..+..... +.|++||+||+|+.+... .+..++...++...+ +.|+++||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999886 58888876543 799999999999965321 244566777777777 78999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIKQR 180 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~ 180 (216)
.|++++|.+|++.+...
T Consensus 160 ~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 160 RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988743
No 57
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.1e-31 Score=194.99 Aligned_cols=162 Identities=43% Similarity=0.737 Sum_probs=143.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..+||+|+|.+|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.|||++|++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46699999999999999999999999888777788777777778888998999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE 167 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 167 (216)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+. ......+++..++..++ ++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999999988776543 2468999999999985 35567788888988888 589999999999999
Q ss_pred HHHHHHHHH
Q 027949 168 EVFFSIARD 176 (216)
Q Consensus 168 ~l~~~l~~~ 176 (216)
++|.++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.8e-31 Score=192.72 Aligned_cols=160 Identities=32% Similarity=0.560 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777666666666777888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|++++.++..+..|+..+..... +.|+++|+||+|+.+. ...+...++...+++++++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 6899999999998431 123455666677899999999999999999999999
Q ss_pred HHHHH
Q 027949 176 DIKQR 180 (216)
Q Consensus 176 ~i~~~ 180 (216)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 88765
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.8e-31 Score=193.65 Aligned_cols=159 Identities=38% Similarity=0.713 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+||+|+|.+|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887788888877766667776 677899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|||+++++++..+..|+..+.... .+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999998886654 3799999999999864 34456677888899999999999999999999999999
Q ss_pred HHH
Q 027949 174 ARD 176 (216)
Q Consensus 174 ~~~ 176 (216)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 754
No 60
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.3e-31 Score=193.68 Aligned_cols=160 Identities=39% Similarity=0.725 Sum_probs=138.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999998887766666665433 456777888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .......+...+++..+++++++||++|.|++++|.||.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887643 35799999999999965 344566667788888889999999999999999999998
Q ss_pred HHH
Q 027949 175 RDI 177 (216)
Q Consensus 175 ~~i 177 (216)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 61
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.5e-31 Score=195.23 Aligned_cols=159 Identities=34% Similarity=0.633 Sum_probs=137.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||+.++..+.+...+.++.. ......+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999988877877765 343445677888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++++|..+. .|+..+.... .+.|++||+||+|+.+.. ..+..+++..++..++. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5888776654 479999999999995421 24677888899999984 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARD 176 (216)
Q Consensus 163 ~~gi~~l~~~l~~~ 176 (216)
|+|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.9e-31 Score=191.72 Aligned_cols=160 Identities=43% Similarity=0.750 Sum_probs=143.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+++|.+|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999999988888888888888888888888889999999999999988999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...++...++.++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999988776655799999999999853 3456677788888888899999999999999999999987
Q ss_pred H
Q 027949 176 D 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 5
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.5e-31 Score=192.45 Aligned_cols=160 Identities=38% Similarity=0.668 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.|||++|.+.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988776666654 455567778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++|.+|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887653 25799999999999854 344555667778877889999999999999999999998
Q ss_pred HHH
Q 027949 175 RDI 177 (216)
Q Consensus 175 ~~i 177 (216)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7.8e-31 Score=190.51 Aligned_cols=161 Identities=49% Similarity=0.847 Sum_probs=144.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++++..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999987767777777777788888888899999999999988888888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+........|+++++||+|+.+ ......++...++...++.++++||++|.|++++|++|++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988877656799999999999864 3456677888888888999999999999999999999998
Q ss_pred HH
Q 027949 176 DI 177 (216)
Q Consensus 176 ~i 177 (216)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 65
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-30 Score=196.30 Aligned_cols=169 Identities=51% Similarity=0.828 Sum_probs=143.4
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+||+|+|.+|+|||||+++|++..+. .+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4456699999999999999999999988764 566777777777778888888899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 91 ILLVYDVTDESSFNNIRN-WIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+|+|||+++++++..+.. |...+.... ..+.|+++|+||+|+.. ......++...++..+++.|+++||++|.|+++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999876 555554433 23579999999999865 344566777888888899999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027949 169 VFFSIARDIKQRL 181 (216)
Q Consensus 169 l~~~l~~~i~~~~ 181 (216)
+|++|.+.+.+..
T Consensus 168 l~~~l~~~~~~~~ 180 (211)
T PLN03118 168 CFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999997754
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=5.6e-31 Score=191.85 Aligned_cols=159 Identities=35% Similarity=0.540 Sum_probs=135.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++++..+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777665333 445566777789999999999999988888899999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|+++++++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999998877765432 4689999999999864 3456666777788888899999999999999999999
Q ss_pred HHHH
Q 027949 173 IARD 176 (216)
Q Consensus 173 l~~~ 176 (216)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9753
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.7e-31 Score=190.39 Aligned_cols=159 Identities=38% Similarity=0.664 Sum_probs=137.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 799999999999999999999988877777766533 3455677887788999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ......++..++...+++++++||++|.|++++|++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999988888887654 34789999999999864 45566778888888899999999999999999999998
Q ss_pred HHH
Q 027949 175 RDI 177 (216)
Q Consensus 175 ~~i 177 (216)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.3e-31 Score=191.26 Aligned_cols=161 Identities=42% Similarity=0.734 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888766666554 333456677888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.+..++...+++++++||++|.|++++|++|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 99999999999998887766432 4689999999999865 345566778888888889999999999999999999999
Q ss_pred HHHH
Q 027949 175 RDIK 178 (216)
Q Consensus 175 ~~i~ 178 (216)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8764
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=8.3e-31 Score=195.83 Aligned_cols=156 Identities=29% Similarity=0.632 Sum_probs=138.6
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH
Q 027949 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 21 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (216)
+|.+|||||||+++++...+...+.++.+.+.....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888878888888888888888888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 101 SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
.++..+..|+..+.... .+.|++||+||+|+.. +.+..+. ..++...++.|++|||++|+||+++|.||++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 3799999999999853 2333333 467777889999999999999999999999998775
No 70
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-31 Score=178.84 Aligned_cols=207 Identities=40% Similarity=0.727 Sum_probs=177.7
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+..+.+|-+++|.-|+|||.|+..+..+.+-...+.+.+.++..+.+++.+..+++.||||.|+++|+...+.+++.+
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
-+.++|||+++..++..+..|+........++..+++++||.||.. ++.+..++++.|+.++|..++++||++|.++++
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 9999999999999999999999998888888889999999999954 778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCC---ccccccCCCCccc-hhhhccCCCCcCC
Q 027949 169 VFFSIARDIKQRLADTDSRAEP---QTIKINQPDQAGG-AAQAAQRSACCGS 216 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~c~~ 216 (216)
.|-...+.+++...+...+... ...+..+.+++.+ .++.+.++--|||
T Consensus 164 afle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 164 AFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 9999999999987776544322 2222222222222 3355555555766
No 71
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.98 E-value=1.7e-30 Score=188.92 Aligned_cols=161 Identities=40% Similarity=0.634 Sum_probs=137.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|.+|+|||||++++++..+...+.++.+.. ....+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3899999999999999999999988776666665533 344566788888999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ......++...++...+++++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887643 34789999999999864 33456667788888888999999999999999999999
Q ss_pred HHHH
Q 027949 174 ARDI 177 (216)
Q Consensus 174 ~~~i 177 (216)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=2.3e-30 Score=187.59 Aligned_cols=161 Identities=42% Similarity=0.791 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++++..+...+.++.+.......+...+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666666666666667777777789999999999989888999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...+....+++++++|++++.|++++++||.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999988877666799999999999864 3345566777788888999999999999999999999988
Q ss_pred HH
Q 027949 176 DI 177 (216)
Q Consensus 176 ~i 177 (216)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 75
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=2.7e-30 Score=189.20 Aligned_cols=165 Identities=44% Similarity=0.762 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777777777777777888888899999999999999989999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 170 (216)
|+++++++..+..|...+..... .+.|+++|+||+|+.+ ......++...++...+ .+++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999988888877655442 3689999999999964 34456677778888887 799999999999999999
Q ss_pred HHHHHHHHHHh
Q 027949 171 FSIARDIKQRL 181 (216)
Q Consensus 171 ~~l~~~i~~~~ 181 (216)
++|.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999988763
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.98 E-value=1.8e-30 Score=194.16 Aligned_cols=164 Identities=23% Similarity=0.382 Sum_probs=134.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 87 (216)
+||+|+|.+|||||||++++.+..+...+.|+.+.+.....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998877888877666666777888889999999999654321 12334688
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCC
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN 163 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 163 (216)
+|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. .+....+++..++. ..+++|+++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999988887654 35799999999999965 33445556666654 45789999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIKQR 180 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~ 180 (216)
.|++++|+.+++.+...
T Consensus 160 ~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 160 WHILLLFKELLISATTR 176 (198)
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999999888754
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=2.8e-30 Score=189.06 Aligned_cols=162 Identities=49% Similarity=0.886 Sum_probs=142.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 93 (216)
.++|+++|++|+|||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999998887778888878888888889988999999999998876 467888999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC---CCCHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEV 169 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l 169 (216)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ......+++..++...+++|+++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999999998887654 34699999999999864 344566778888888889999999999 8999999
Q ss_pred HHHHHHHH
Q 027949 170 FFSIARDI 177 (216)
Q Consensus 170 ~~~l~~~i 177 (216)
|.++++.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=4e-30 Score=186.99 Aligned_cols=160 Identities=33% Similarity=0.644 Sum_probs=136.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+||+|+|.+|||||||++++... .+...+.++.+.++....+..+ +..+++.+||++|.+.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5777788888777766666664 56689999999999998888899999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+ ...........+....+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998887664 4689999999999854 3344555666777777889999999999999999999
Q ss_pred HHHHH
Q 027949 173 IARDI 177 (216)
Q Consensus 173 l~~~i 177 (216)
|.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98875
No 77
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.4e-30 Score=185.76 Aligned_cols=159 Identities=50% Similarity=0.912 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887767788877777777788888889999999999999888889999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999998887664 35799999999999853 44566788888888899999999999999999999988
Q ss_pred HH
Q 027949 175 RD 176 (216)
Q Consensus 175 ~~ 176 (216)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 78
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-32 Score=187.89 Aligned_cols=177 Identities=49% Similarity=0.912 Sum_probs=158.7
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 80 (216)
.+.+|.+|.+.+|.+|+|||+|+.++..+.+......+.++++....+.++ +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356788999999999999999999999999999999999999888887663 45688999999999999999
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
...|++.+-+++++||+++..+|..+++|+..+.-.. ..+..+++++||+||.+ .+.++.+++..++.++++|||++|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeec
Confidence 9999999999999999999999999999998886533 34678899999999965 778899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949 160 AKTNLNVEEVFFSIARDIKQRLADTDSR 187 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~~~~~~~ 187 (216)
|-+|.++++..+.|+..++++.+.....
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~v~~ 190 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQCVEK 190 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988774433
No 79
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.1e-29 Score=185.53 Aligned_cols=164 Identities=49% Similarity=0.884 Sum_probs=142.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988877667777777777778888888889999999999988888889999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+.......+.+.....++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999999999888776666799999999999864 3445556667777777789999999999999999999
Q ss_pred HHHHH
Q 027949 173 IARDI 177 (216)
Q Consensus 173 l~~~i 177 (216)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=5.1e-30 Score=197.42 Aligned_cols=161 Identities=27% Similarity=0.451 Sum_probs=136.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+++++...+...+.++.+ +.....+.+++..+.+.||||+|.+.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877777765 555667788888899999999999988888888889999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEecCCCCC
Q 027949 96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN 165 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 165 (216)
|++++++|..+..|+..+... ...+.|+++|+||+|+.. ...+..+++..++.. .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999999998888653 224689999999999864 344566777776654 357899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIK 178 (216)
Q Consensus 166 i~~l~~~l~~~i~ 178 (216)
++++|++|.+...
T Consensus 159 I~elf~~L~~~~~ 171 (247)
T cd04143 159 LDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=4.8e-30 Score=188.41 Aligned_cols=160 Identities=34% Similarity=0.637 Sum_probs=136.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
|+|+|.+|+|||||++++.+..+...+.++.... ....+..++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999887777766533 345667788888999999999999999999999999999999999
Q ss_pred CCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949 98 TDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKTNL 164 (216)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
++++++..+. .|+..+....+ +.|+++|+||+|+.+.. ..+..+++..++...+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 48888876554 79999999999985421 23566778889999986 99999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQ 179 (216)
Q Consensus 165 gi~~l~~~l~~~i~~ 179 (216)
|++++|+.|++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988753
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7e-30 Score=190.38 Aligned_cols=159 Identities=30% Similarity=0.501 Sum_probs=128.5
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHHcCC-----CCCccccceee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
.+||+++|..|+|||||+. ++.+.. +...+.|+.+. +..... +.+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3899999999999999995 665543 34456666642 222211 25678889999999999875 3
Q ss_pred ccccccccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 027949 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES------------------KRAVP 140 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------------~~~~~ 140 (216)
+...+++++|++|+|||++++.+|..+. .|+..+....+ +.|+++|+||+||.+. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 58888876653 6899999999998641 35678
Q ss_pred hHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 141 TSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
.++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999998864
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1e-29 Score=186.70 Aligned_cols=160 Identities=30% Similarity=0.581 Sum_probs=136.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++....+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988776766654 333446777888888999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++.++..+. .|+..+... ..+.|+++|+||+|+.+.. ..+..+++..+++..++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 477777655 4579999999999985432 24566778888888886 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDI 177 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i 177 (216)
|.|++++|+.+++++
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999876
No 84
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=6.6e-30 Score=184.76 Aligned_cols=154 Identities=25% Similarity=0.427 Sum_probs=128.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|+.|+|||||+.++....+...+.++.+ .....+.+++..+.+.+||++|.+. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998887765544422 2346678888888999999999964 34567899999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|++++++|..+..|+..+..... .+.|+++|+||.|+.. ..+.+..+++..+++.. ++.|++|||++|.||+++|.+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999998877653 5689999999999853 24567777888888876 489999999999999999999
Q ss_pred HHHH
Q 027949 173 IARD 176 (216)
Q Consensus 173 l~~~ 176 (216)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.5e-29 Score=185.78 Aligned_cols=158 Identities=35% Similarity=0.609 Sum_probs=135.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++....+...+.++. .+.....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777765 3444556778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 5887776543 36899999999998642 345667788899998887 999999999
Q ss_pred CCCHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIAR 175 (216)
Q Consensus 163 ~~gi~~l~~~l~~ 175 (216)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=6.6e-30 Score=186.89 Aligned_cols=162 Identities=23% Similarity=0.315 Sum_probs=137.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
..+||+|+|.+|+|||||++++++..+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4699999999999999999999999987 778888887777777888888889999999999999888899999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 171 (216)
+|||++++.++..+..|+..+... .+.|+++|+||+|+.+. ......+...++..+++ .++++||++|.|++++|+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 999999999999988888765332 36899999999998543 22233445667777776 579999999999999999
Q ss_pred HHHHHHH
Q 027949 172 SIARDIK 178 (216)
Q Consensus 172 ~l~~~i~ 178 (216)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998875
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.2e-29 Score=182.85 Aligned_cols=159 Identities=58% Similarity=0.999 Sum_probs=142.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||...+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888888888888888899999999999988888999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
|+++++++..+..|+..+........|+++++||+|+.. ......++.+.++...+++++++||+++.|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 999999999999999988887656799999999999852 3455678888888888899999999999999999999863
No 88
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2.2e-29 Score=183.95 Aligned_cols=161 Identities=39% Similarity=0.680 Sum_probs=138.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 78999999999999999999998887666666653 34566778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|+++++++..+..|...+.... ..+.|+++++||.|+.+ ......++...+++..+ ++++++||++|.|++++|.+|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999988886643 34799999999999864 34456667777888877 799999999999999999999
Q ss_pred HHHHH
Q 027949 174 ARDIK 178 (216)
Q Consensus 174 ~~~i~ 178 (216)
+..++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 88764
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=3e-29 Score=190.74 Aligned_cols=167 Identities=31% Similarity=0.458 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cccEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 93 (216)
+||+|+|.+|+|||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|.+. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55556555466677788888889999999999972 23344556 8999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887654 24799999999999865 3456667778888888899999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 027949 173 IARDIKQRLADTD 185 (216)
Q Consensus 173 l~~~i~~~~~~~~ 185 (216)
|++.+........
T Consensus 158 l~~~~~~~~~~~~ 170 (221)
T cd04148 158 IVRQIRLRRDSKE 170 (221)
T ss_pred HHHHHHhhhcccc
Confidence 9999976554433
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.2e-29 Score=184.72 Aligned_cols=160 Identities=38% Similarity=0.594 Sum_probs=133.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccccEEEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 95 (216)
||+|+|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||... .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45567788888999999999875 3445677889999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFS 172 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~ 172 (216)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..++...+++|+++||++|. |++++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999988887654 34799999999999854 34566778888898889999999999995 99999999
Q ss_pred HHHHHH
Q 027949 173 IARDIK 178 (216)
Q Consensus 173 l~~~i~ 178 (216)
|.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 988654
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.4e-28 Score=178.68 Aligned_cols=162 Identities=40% Similarity=0.669 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.++++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 4899999999999999999999888766666554 334455677888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...........+...++++++++||++|+|++++|++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999888887753 24799999999999864 233456667778888889999999999999999999998
Q ss_pred HHHHH
Q 027949 175 RDIKQ 179 (216)
Q Consensus 175 ~~i~~ 179 (216)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87753
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.7e-28 Score=178.50 Aligned_cols=160 Identities=35% Similarity=0.660 Sum_probs=132.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777765443 346677888889999999999999888888899999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..+.....+.++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 4777776543 378999999999985421 12334567777777774 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDI 177 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i 177 (216)
|.|++++|.+|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.5e-28 Score=177.68 Aligned_cols=159 Identities=41% Similarity=0.719 Sum_probs=137.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||...+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887766666655 5556667777777899999999999888888899999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.+..++...+++++++|++++.|++++|++|++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 9999999999998888877654 5799999999999865 3455667888888888899999999999999999999987
Q ss_pred HH
Q 027949 176 DI 177 (216)
Q Consensus 176 ~i 177 (216)
.+
T Consensus 159 ~i 160 (160)
T cd00876 159 EI 160 (160)
T ss_pred hC
Confidence 53
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=7.7e-29 Score=181.05 Aligned_cols=154 Identities=21% Similarity=0.396 Sum_probs=122.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|.+|+|||||++++....+.. +.++.+.+.. .+... .+.+.+||++|++.+..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998777653 4566665443 33344 3889999999999998889999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 167 (216)
|||++++.++..+..|+..+... ...+.|++||+||+|+.+ ....+++..+... ..+.++++||++|.|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999999888877666543 224689999999999854 2345555555421 23578999999999999
Q ss_pred HHHHHHHH
Q 027949 168 EVFFSIAR 175 (216)
Q Consensus 168 ~l~~~l~~ 175 (216)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999975
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=7.3e-29 Score=183.66 Aligned_cols=167 Identities=22% Similarity=0.356 Sum_probs=130.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.+||+++|.+|||||||++++....+... .++.+.......+.. ++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 38999999999999999999998877643 565555554444443 3355899999999999998899999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------hCCeEEEEecCCCCCH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------YGIKFFETSAKTNLNV 166 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi 166 (216)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....++...+... .+++++++||++|+|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999988888877765532 24689999999999853 2233444443321 1256899999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 027949 167 EEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~~~~ 185 (216)
++++++|.+.+.+.++..+
T Consensus 159 ~~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 159 QEGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999987665544
No 96
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.4e-28 Score=183.09 Aligned_cols=161 Identities=32% Similarity=0.506 Sum_probs=132.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|+|||||+++++...+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766656553 3445567778877899999999999988888889999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
++++.++..+..|+..+..... .+.|+++|+||+|+.+....+..+....... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877544 4799999999999865334444444444333 4457899999999999999999999
Q ss_pred HHHH
Q 027949 175 RDIK 178 (216)
Q Consensus 175 ~~i~ 178 (216)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.4e-28 Score=181.63 Aligned_cols=159 Identities=19% Similarity=0.375 Sum_probs=123.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+++|.+|||||||++++....+. .+.|+.+.+. ..+..++ +.+.+||+||++.+..++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4489999999999999999999877765 3566666443 3445554 889999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEecCCCCCHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 167 (216)
|||+++++++..+..++..+... ...+.|++||+||+|+.+. ...+++....... .+.++++||++|+|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999888777665432 2246899999999998643 2333333322211 1346689999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 168 EVFFSIARDIKQR 180 (216)
Q Consensus 168 ~l~~~l~~~i~~~ 180 (216)
++|+||.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 98
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.5e-28 Score=176.78 Aligned_cols=158 Identities=37% Similarity=0.692 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+++|.+..+...+.++.. +.....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666554 344455677788899999999999988888888889999999999
Q ss_pred eCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------ccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949 96 DVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN 163 (216)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
|.+++.++..... |+..+..... +.|+++|+||+|+.+... .+..++...++..+++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999888765 6666665543 799999999999865432 2346777888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 027949 164 LNVEEVFFSIAR 175 (216)
Q Consensus 164 ~gi~~l~~~l~~ 175 (216)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=6.1e-28 Score=179.30 Aligned_cols=163 Identities=35% Similarity=0.607 Sum_probs=134.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777666666554333 345677787788999999999888877777889999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL 164 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
|+++.+++..+. .|+..+....+ ..|+++|+||+|+.+. ......++...+++..+. .|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 58888876554 6999999999998532 233445678888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQR 180 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~ 180 (216)
|++++|+++.+.++..
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999887554
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=7.4e-28 Score=177.76 Aligned_cols=164 Identities=36% Similarity=0.598 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|.+|+|||||++++.+..+...+.++..... ...+..++..+.+.+||+||+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887766666554333 455677777788999999999998888888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|.++..++..+..|+..+.... ..+.|+++|+||+|+.. .+.....+...++...+++++++||+++.|++++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999887776653 34689999999999864 344455666777788889999999999999999999999
Q ss_pred HHHHHHh
Q 027949 175 RDIKQRL 181 (216)
Q Consensus 175 ~~i~~~~ 181 (216)
+.+....
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 9887654
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.3e-28 Score=182.10 Aligned_cols=159 Identities=22% Similarity=0.420 Sum_probs=122.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|++|||||||++++..+.+.. +.++.+.+. ..+..++ +.+.+||++|++.+..++..+++.+|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998777654 556665443 3444444 8899999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 168 (216)
+|+++++++..+..++..+... .....|++||+||.|+.+. ....++..... ...+.++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999888776665432 2236899999999998542 22222222211 1224677999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027949 169 VFFSIARDIKQRL 181 (216)
Q Consensus 169 l~~~l~~~i~~~~ 181 (216)
+|+||.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887653
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.6e-28 Score=178.49 Aligned_cols=156 Identities=19% Similarity=0.376 Sum_probs=125.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+|||||||++++.+..+.. +.++.+... ..+..++ +.+.+||+||+..+...+..+++.+|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 58999999999999999999886653 566655444 3445554 789999999999988889999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC------CeEEEEecCCCCCHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 169 (216)
+++++++..+..|+..+.... ..+.|++||+||+|+.+ ....+++..++...+ +.++++||++|.|++++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999988888776532 23589999999999853 345566666554222 37889999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 170 FFSIARDIKQR 180 (216)
Q Consensus 170 ~~~l~~~i~~~ 180 (216)
|+||.+.+...
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876653
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=8.7e-29 Score=179.24 Aligned_cols=152 Identities=20% Similarity=0.427 Sum_probs=118.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|||||||++++..+.+. .+.|+.+... ..+.... +.+.+||++|++.+..++..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877776 3566666443 3344444 88999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHH-HHHHH----HHhCCeEEEEecCCCCCHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSK-GQALA----DEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~gi~~l 169 (216)
|++++.++..+..|+..+... .....|++|++||+|+.+. ....+ ...+. ....+.++++||++|.|++++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 999999999998877766432 2235899999999998542 12222 22221 122356789999999999999
Q ss_pred HHHHHH
Q 027949 170 FFSIAR 175 (216)
Q Consensus 170 ~~~l~~ 175 (216)
|+||.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999965
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.8e-28 Score=180.35 Aligned_cols=155 Identities=19% Similarity=0.392 Sum_probs=121.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|.+|+|||||++++....+. .+.|+.+.+.. .+...+ +.+.+||++|++.+..++..+++++|++|+|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999877664 35566665443 344444 7899999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 168 (216)
||+++++++.....|+..+... ...+.|++||+||.|+.+.. ..+++..... ...+.++++||++|.|+++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 9999999999988887776543 22468999999999985422 2222222221 1234577899999999999
Q ss_pred HHHHHHHHH
Q 027949 169 VFFSIARDI 177 (216)
Q Consensus 169 l~~~l~~~i 177 (216)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998775
No 105
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.6e-30 Score=171.13 Aligned_cols=164 Identities=50% Similarity=0.925 Sum_probs=150.3
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 19 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
+++|.+++|||.|+-++....+. ....++.++++....+..++..+++++|||.|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999888777664 55668899999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
.+..+|+....|+.++.++......+++++||+|+.+ ++.+..++.+.++..+++|+.++||++|.+++..|..|.+.+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999999999999888889999999999965 467888999999999999999999999999999999999988
Q ss_pred HHHhhc
Q 027949 178 KQRLAD 183 (216)
Q Consensus 178 ~~~~~~ 183 (216)
.+..-.
T Consensus 160 ~k~~~~ 165 (192)
T KOG0083|consen 160 KKLKMG 165 (192)
T ss_pred HHhccC
Confidence 876443
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=9.8e-29 Score=179.84 Aligned_cols=153 Identities=20% Similarity=0.324 Sum_probs=123.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
|+++|.+|||||||++++.+..+...+.++.+... ..+.. ..+.+.+||++|+..+..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPT--QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEee--CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999887777777776442 23333 348899999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCeEEEEecCC------CCCHHH
Q 027949 98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP---TSKGQALADEYGIKFFETSAKT------NLNVEE 168 (216)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~ 168 (216)
+++.++..+..|+..+.... .+.|+++|+||.|+........ ...+..++...++.++++||++ ++|+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999988888776543 4799999999999865321111 0123455566678999999988 999999
Q ss_pred HHHHHHH
Q 027949 169 VFFSIAR 175 (216)
Q Consensus 169 l~~~l~~ 175 (216)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998864
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=7.9e-28 Score=176.56 Aligned_cols=155 Identities=20% Similarity=0.384 Sum_probs=122.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|++|||||||++++.+..+. .+.++.+ +....+.+++ +.+.+||+||++.++.++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34589999999999999999999987553 3445544 3334455554 78999999999988888899999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 166 (216)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++..+.. ..+++++++||++|.|+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 999999999999888887776542 2347999999999998642 23444444442 23578999999999999
Q ss_pred HHHHHHHHH
Q 027949 167 EEVFFSIAR 175 (216)
Q Consensus 167 ~~l~~~l~~ 175 (216)
+++|+||++
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.1e-28 Score=176.60 Aligned_cols=152 Identities=19% Similarity=0.369 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+|+++|.+|||||||+++|.+..+ ...+.++.+... ..+...+ +.+.+||+||...+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445566665433 2333444 78999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 167 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+...... ...+.++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999988888877765432 2479999999999986432 2222222211 123468999999999999
Q ss_pred HHHHHHHH
Q 027949 168 EVFFSIAR 175 (216)
Q Consensus 168 ~l~~~l~~ 175 (216)
++|+||.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.8e-27 Score=177.79 Aligned_cols=165 Identities=32% Similarity=0.612 Sum_probs=142.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|.+.+..++..++++++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34559999999999999999999888888888888888888777777788889999999999999988888899999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
++|||+++..++..+..|+..+.... .+.|+++++||+|+.+ ..... ....++...++.++++||++|.|++++|.
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998887654 4689999999999853 22222 33456777789999999999999999999
Q ss_pred HHHHHHHHH
Q 027949 172 SIARDIKQR 180 (216)
Q Consensus 172 ~l~~~i~~~ 180 (216)
+|.+.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999998764
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2e-27 Score=173.26 Aligned_cols=161 Identities=30% Similarity=0.446 Sum_probs=123.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|||||||++++.++.+...+..+. ........+++..+.+.+||++|...+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 122333455666789999999999887777777889999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHH
Q 027949 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 171 (216)
|++++.++..+. .|+..+..... +.|+++|+||+|+.+..... ..+.+..++..+. ..++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 57777766543 79999999999996533211 1233333333332 3899999999999999999
Q ss_pred HHHHHHHH
Q 027949 172 SIARDIKQ 179 (216)
Q Consensus 172 ~l~~~i~~ 179 (216)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99988764
No 111
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.5e-27 Score=174.07 Aligned_cols=157 Identities=29% Similarity=0.519 Sum_probs=127.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|+.||||||+++++...... ...||.+ .....+.+++ +.+.+||.+|+..++..|..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 55699999999999999999999976544 3556655 5556677777 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEecCCCCC
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLN 165 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 165 (216)
||+|.++.+.+.+....+..+... .-.+.|++|++||.|+.++ ...+++..... ...+.++.|||.+|+|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999998888877776553 2247999999999998653 34444444332 2346799999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDI 177 (216)
Q Consensus 166 i~~l~~~l~~~i 177 (216)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.6e-27 Score=173.95 Aligned_cols=154 Identities=22% Similarity=0.331 Sum_probs=120.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|.+|||||||++++.+. +...+.++.+.. ...+..++ +.+.+||+||+..++.++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999976 555666776643 34555555 789999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHh--CCeEEEEecCCC------C
Q 027949 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSK---GQALADEY--GIKFFETSAKTN------L 164 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~--~~~~~~~Sa~~~------~ 164 (216)
++++.++..+..|+..+.... ..+.|++||+||+|+.+......... +..++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888876542 24789999999999865332111111 12233223 357888999998 8
Q ss_pred CHHHHHHHHHH
Q 027949 165 NVEEVFFSIAR 175 (216)
Q Consensus 165 gi~~l~~~l~~ 175 (216)
|+++.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 113
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=172.22 Aligned_cols=164 Identities=41% Similarity=0.676 Sum_probs=150.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
..||+++|.+|+|||+|+.++....+...+.|+.. +.+...+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 47999999999999999999999999999999887 66777888899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|++++..+|+.+..++..+.+.. ....|+++|+||+|+.. .+.+..++++.++...+++|+++||+.+.+++++|..|
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999998885433 34579999999999965 47889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027949 174 ARDIKQR 180 (216)
Q Consensus 174 ~~~i~~~ 180 (216)
++.+...
T Consensus 161 ~r~~~~~ 167 (196)
T KOG0395|consen 161 VREIRLP 167 (196)
T ss_pred HHHHHhh
Confidence 9988873
No 114
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=9.9e-27 Score=161.32 Aligned_cols=165 Identities=22% Similarity=0.381 Sum_probs=133.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
++..++|+++|..||||||++++|.+.... ...|+.+ +...++.+++ +++++||.+|+...+..|.+||...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 344699999999999999999999988743 3445544 6667777777 8999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccChH---HHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKILVGNKADMDESKRAVPTS---KGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
|+|||.+|+..+++....++.+. +..-.+.|++|++||.|+..+-...... .+..++....++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 99999999999988877665553 3333478999999999997543332222 2344456667999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027949 168 EVFFSIARDIKQRL 181 (216)
Q Consensus 168 ~l~~~l~~~i~~~~ 181 (216)
+-++||...+..+.
T Consensus 168 ~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 168 EGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988743
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=3.1e-27 Score=171.07 Aligned_cols=152 Identities=26% Similarity=0.472 Sum_probs=116.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|++|||||||++++.+..+.. ..++.+.. ...+... ..+.+.+||++|+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988754 34554433 3334433 34789999999999888888889999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH------HHHhCCeEEEEecCCCCCHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++... ....+++++++||++|+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999888888777765432 247999999999998532 122222222 2223457999999999999999
Q ss_pred HHHHHH
Q 027949 170 FFSIAR 175 (216)
Q Consensus 170 ~~~l~~ 175 (216)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.4e-26 Score=170.07 Aligned_cols=153 Identities=23% Similarity=0.353 Sum_probs=118.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+++|.+|+|||||++++....+.. +.++.+... ..+.+++ +.+.+||+||++.+...+..+++.+|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4899999999999999999999877664 445555333 3455554 7899999999999988899999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHH-HHHH----HHhCCeEEEEecCCCCCHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++. ..+. ...+++++++||++|+|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999998888877666664432 246899999999998542 223332 2221 22346799999999999999
Q ss_pred HHHHHHH
Q 027949 169 VFFSIAR 175 (216)
Q Consensus 169 l~~~l~~ 175 (216)
+|+||.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999975
No 117
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=3.6e-26 Score=170.76 Aligned_cols=147 Identities=21% Similarity=0.408 Sum_probs=123.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccccE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+||+++|.+|+|||||++++.+..+...+.++.+.+.....+.++ +..+.+.|||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666663 466899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCccChH----HHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKILVGNKADMDESKRAVPTS----KGQAL 147 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 147 (216)
+|+|||++++++++.+..|+..+.... ..+.|++||+||.|+.+. +..... ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence 999999999999999999999886531 246899999999998653 222322 24466
Q ss_pred HHHhCCeEEEEecCCC
Q 027949 148 ADEYGIKFFETSAKTN 163 (216)
Q Consensus 148 ~~~~~~~~~~~Sa~~~ 163 (216)
+.+.+++.++.++.++
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 7788999999998865
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.4e-26 Score=172.40 Aligned_cols=155 Identities=22% Similarity=0.342 Sum_probs=123.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|++|||||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999987764 34454443 334566666 788999999998888888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----------------hCCeEE
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF 156 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 156 (216)
|+|+++..++.....|+..+.... ..+.|+++++||+|+.. ....++++.+... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999998888878777776533 24689999999999853 3445566655542 225799
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~ 176 (216)
+|||++|+|++++|.||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 119
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=5.1e-26 Score=166.97 Aligned_cols=144 Identities=40% Similarity=0.675 Sum_probs=126.5
Q ss_pred CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC
Q 027949 39 SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS 118 (216)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 118 (216)
.|...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|..+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45667888888888888888999999999999999999999999999999999999999999999999999998876655
Q ss_pred CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 119 DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 119 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
.+.|++||+||+|+.+ ...+..+++..++..+++.|+++||++|.|++++|++|++.+.+..+.
T Consensus 84 ~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 84 KDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 5789999999999964 344677788888888899999999999999999999999998765433
No 120
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=5.4e-27 Score=170.69 Aligned_cols=167 Identities=36% Similarity=0.626 Sum_probs=149.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
..+|++|||..++|||+|+-.+..+.|+..+.|+.. +-+...+.++ +..+.+.+|||.|+++|+.++...++++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999987 6666777884 99999999999999999998888999999999
Q ss_pred EEEeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEe
Q 027949 93 LVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~S 159 (216)
++|++.++.+++.+.. |+.++...++ +.|+++||+|.||.++ ...+..+++..++++.| ..|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999765 9999998885 7999999999999742 23567788999999999 6999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q 027949 160 AKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
|++..|+.++|+..+.+.+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999887643
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.4e-27 Score=168.92 Aligned_cols=151 Identities=24% Similarity=0.394 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|+|||||++++....+.. +.++.+.+. ..+.+.+ +.+.+||+||...+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777653 345444333 3344444 789999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
++++.++.....++..+.. ....+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 9999888776665554433 222468999999999985422 2222221111 122579999999999999999
Q ss_pred HHHHH
Q 027949 171 FSIAR 175 (216)
Q Consensus 171 ~~l~~ 175 (216)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99975
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.8e-26 Score=167.25 Aligned_cols=152 Identities=22% Similarity=0.397 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+|+|+|++|+|||||++++.+... ...+.++.+ .....+.+++ ..+.+||+||+..+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG--LNIGTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc--cceEEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 122333433 3334555665 789999999999999888999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCCeEEEEecCC
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT 162 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 162 (216)
+++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ....+...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999988888888877765532 247999999999998542 233344444322 246899999999
Q ss_pred CCCHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIAR 175 (216)
Q Consensus 163 ~~gi~~l~~~l~~ 175 (216)
|+|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999975
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=3.5e-26 Score=165.28 Aligned_cols=151 Identities=23% Similarity=0.413 Sum_probs=118.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|||||||++++++.... .+.++.+. ....+.+++ +.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGF--NVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCc--ceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 34455443 334455555 789999999999998899999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHHHH
Q 027949 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999888877765532 3478999999999985422 2333333322 234689999999999999999
Q ss_pred HHHHH
Q 027949 171 FSIAR 175 (216)
Q Consensus 171 ~~l~~ 175 (216)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3e-26 Score=169.78 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=120.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|.+|||||||++++.+..+.. +.++.+ .....+..++ +.+.+||+||...+...+..+++++|++|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQH--PTSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34899999999999999999999876643 334433 2334445555 788999999999888889999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEec
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA 160 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 160 (216)
|+|+++++++.....++..+.... ..+.|+++|+||+|+.. ....+++...... ..+.+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999988888777665432 24789999999999853 2344444433311 1347999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARD 176 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~ 176 (216)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.8e-25 Score=163.04 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=109.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------TTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~ 87 (216)
+|+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++ +.+.+|||||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 789999999999999999999876533333334444444444444 78999999997421110 0011123
Q ss_pred ccEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 88 AMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
.|++|+|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.. . ......+....+++++++||++|.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~--~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-D--LSEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-h--HHHHHHhhhhccCceEEEEecccCC
Confidence 6899999999987643 55556777776543 368999999999985421 1 1224455555568999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDI 177 (216)
Q Consensus 166 i~~l~~~l~~~i 177 (216)
++++|++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.5e-25 Score=162.62 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---RGAM 89 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d 89 (216)
+|+|+|.+|||||||+++|.+........+..+.+.....+.+++. ..+.+|||||... ...+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976643222233334444445555542 3789999999632 222333333 3599
Q ss_pred EEEEEEeCCCH-hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCC
Q 027949 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLN 165 (216)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g 165 (216)
++++|+|++++ +++..+..|.+.+..... .+.|+++|+||+|+.+.. ...+....+.... +.+++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999999 788888888888876542 368999999999985422 2233444555553 67899999999999
Q ss_pred HHHHHHHHHHH
Q 027949 166 VEEVFFSIARD 176 (216)
Q Consensus 166 i~~l~~~l~~~ 176 (216)
++++|++|.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.3e-25 Score=161.80 Aligned_cols=151 Identities=23% Similarity=0.466 Sum_probs=119.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
|+++|++|||||||++++.+..+...+.++.+.... .+...+ +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 799999999999999999999888777777765543 344554 7899999999999998899999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHHHHH
Q 027949 98 TDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
+++.++.....++..+... ...+.|+++|+||+|+.+.. ......... ....++++++|+++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9999888887777666442 22468999999999985421 122222111 12236899999999999999999
Q ss_pred HHHH
Q 027949 172 SIAR 175 (216)
Q Consensus 172 ~l~~ 175 (216)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9975
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.6e-25 Score=175.00 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=123.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccc----cccccc---cc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF----RTITTA---YY 85 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~----~~~~~~---~~ 85 (216)
....|+|+|.||||||||+++|++........+.++.......+.+ ++ ..+.+||+||..+- ..+... .+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 3467899999999999999999987654444455667777777777 34 56899999996431 123333 34
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
..++++|+|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+.. .........+....+++++++||+++
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~-~~~~~~~~~~~~~~~~~i~~iSAktg 313 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE-EEREKRAALELAALGGPVFLISAVTG 313 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch-hHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 568999999999988788888889888877643 368999999999986422 22233344445556689999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIKQR 180 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~ 180 (216)
+|+++++++|.+.+.+.
T Consensus 314 ~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 314 EGLDELLRALWELLEEA 330 (335)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 129
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.3e-24 Score=170.20 Aligned_cols=143 Identities=24% Similarity=0.485 Sum_probs=122.0
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-------------eEEEEEEEeCCCccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------KRIKLQIWDTAGQER 76 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~ 76 (216)
......+||+|+|..|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.|||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 4556679999999999999999999999998888888888777767676642 458899999999999
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--Cc---c
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKILVGNKADMDESK--RA---V 139 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~--~~---~ 139 (216)
|..++..++++++++|+|||+++..++..+..|+..+..... ...|++||+||+||.+.. +. .
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999977531 258999999999996432 12 3
Q ss_pred ChHHHHHHHHHhC
Q 027949 140 PTSKGQALADEYG 152 (216)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (216)
..++++.++..++
T Consensus 176 ~~e~a~~~A~~~g 188 (334)
T PLN00023 176 LVDAARQWVEKQG 188 (334)
T ss_pred cHHHHHHHHHHcC
Confidence 5788999999887
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=6.3e-25 Score=161.00 Aligned_cols=155 Identities=21% Similarity=0.366 Sum_probs=115.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|++|||||||++++.+..+. ...++.+ .....+..++ ..+.+||++|...+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999987654 2344444 3334555666 67899999999888888888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi 166 (216)
+|+|+++..++.....++..+... ...+.|+++++||+|+.+.. ..+.+....... .+.++++||++|+|+
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PAEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CHHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 999999998888877766555432 22468999999999985421 122222221111 135789999999999
Q ss_pred HHHHHHHHH
Q 027949 167 EEVFFSIAR 175 (216)
Q Consensus 167 ~~l~~~l~~ 175 (216)
+++|+||.+
T Consensus 164 ~~~~~~l~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999975
No 131
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-25 Score=156.84 Aligned_cols=161 Identities=21% Similarity=0.417 Sum_probs=131.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+++|..+|||||++.+|...++... .||.+ ..+..+++.+ +.+.+||.+|++.++.+|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 44569999999999999999999988886654 77777 5555666666 8999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCC
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLN 165 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 165 (216)
|||+|.+|.+.+..++..+..+..... .+.|+++++||.|++++- +..++..... ...+.+..|+|.+|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al---s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL---SAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC---CHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 999999999999998887766655443 579999999999997643 3333333322 2347899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~i~~~ 180 (216)
+.+.++||.+.+..+
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=6.6e-25 Score=165.21 Aligned_cols=157 Identities=21% Similarity=0.204 Sum_probs=114.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 83 (216)
+..++|+|+|.+|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 55689999999999999999999998754333334444455555555543 3789999999732 1111 12
Q ss_pred ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... .......+.+++++||+++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH------HHHhhcCCCceEEEEcCCC
Confidence 3568999999999999888877767776666554456899999999998542211 1334445578999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDI 177 (216)
Q Consensus 164 ~gi~~l~~~l~~~i 177 (216)
.|+++++++|.+++
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.6e-24 Score=153.82 Aligned_cols=157 Identities=35% Similarity=0.508 Sum_probs=125.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..++++++.+++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999877777788887777777778877788999999999888888888888999999999
Q ss_pred eCCCH-hHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 96 DVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 96 d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.+|.|+++++++|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 98776 5665554 56665655544478999999999985422 23333333344445689999999999999999987
Q ss_pred H
Q 027949 174 A 174 (216)
Q Consensus 174 ~ 174 (216)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.5e-24 Score=159.87 Aligned_cols=154 Identities=27% Similarity=0.381 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-------CCCccccc------eeeeEEEE--EEEE---CCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIR--TIEL---DGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+++|||||+++|++.. +...+.++ .+...... .+.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998742 11111111 11122222 2223 5566889999999999998
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---eE
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI---KF 155 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 155 (216)
..+..+++.+|++|+|+|+++..+......|.... ..+.|+++|+||+|+.+.. .......++..+++ .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence 88888999999999999999876665555554322 1368999999999985421 22233455555665 48
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 027949 156 FETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 156 ~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
+++||++|.|++++|++|.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998764
No 135
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-26 Score=161.92 Aligned_cols=173 Identities=34% Similarity=0.632 Sum_probs=159.6
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
+...+..+|++|+|..++||||+|++++.+-|...+..+.+.++....+.++++.+.+.+||++|+++|+.+...+++.+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 34567789999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
.+.++||+-+|..+|+....|+..+..... .+|.++|-||+||.+ .......+++.+++.+...++-+|++...++..
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999999999987765 699999999999976 456778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027949 169 VFFSIARDIKQRLAD 183 (216)
Q Consensus 169 l~~~l~~~i~~~~~~ 183 (216)
+|.+|++.+.++..+
T Consensus 172 vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987766
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=3.5e-24 Score=155.42 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=105.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+.|+|+|.+|+|||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999743 2223334444455555555552 268999999999888766667788999999
Q ss_pred EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHH---hCCeEEEEecCCCCC
Q 027949 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADE---YGIKFFETSAKTNLN 165 (216)
Q Consensus 93 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 165 (216)
+|+|+++ +++...+ ..+... ...|+++|+||+|+.+... ....++..++... .+.+++++||++|+|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333222 222222 1248999999999864211 1112333444443 357999999999999
Q ss_pred HHHHHHHHHH
Q 027949 166 VEEVFFSIAR 175 (216)
Q Consensus 166 i~~l~~~l~~ 175 (216)
+++++++|.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 137
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=152.03 Aligned_cols=159 Identities=23% Similarity=0.428 Sum_probs=127.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+.+.++|..++|||||++.+..+.+.....|+.+ +....++..+ +++.+||.||+..|+.+|+.|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 47899999999999999999998888777778777 4445555555 8999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+|+.+++.+...+..+..+..... .++|++|++||.|++++- ....+..-. ....+..|.+|+++..+|+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL---~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL---SKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc---cHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 999999998888887766655433 579999999999986643 222222111 12226889999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 169 VFFSIARDIKQR 180 (216)
Q Consensus 169 l~~~l~~~i~~~ 180 (216)
+..||+++-...
T Consensus 173 ~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 173 TLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHhhhh
Confidence 999999886543
No 138
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1e-24 Score=155.00 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=109.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 87 (216)
++|+++|.||+|||||+|+|++......+.|+.+.+.....+.+.+ ..+.++|+||...... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999997777789999999889999988 6788999999533221 223333 57
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
.|++|+|+|+++.+.-. .+...+.+. +.|+++|+||+|.... .-..-+...+.+.++++++++||++++|++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~---g~P~vvvlN~~D~a~~--~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL---GIPVVVVLNKMDEAER--KGIEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT---TSSEEEEEETHHHHHH--TTEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc---CCCEEEEEeCHHHHHH--cCCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 89999999998754322 223333333 7999999999997432 222234667788889999999999999999
Q ss_pred HHHHHH
Q 027949 168 EVFFSI 173 (216)
Q Consensus 168 ~l~~~l 173 (216)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998875
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=8.3e-24 Score=154.18 Aligned_cols=158 Identities=19% Similarity=0.142 Sum_probs=110.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999888765544444544444444443 13478899999999888888888889999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEecCCCCCHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 169 (216)
|+++....... ..+..+.. .+.|+++|+||+|+..............+.. ...++++++|+++|.|++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99875322211 11222222 3689999999999864221111111211111 11368999999999999999
Q ss_pred HHHHHHHHH
Q 027949 170 FFSIARDIK 178 (216)
Q Consensus 170 ~~~l~~~i~ 178 (216)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=7e-23 Score=155.72 Aligned_cols=169 Identities=39% Similarity=0.576 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|+.|||||||+++|....+...+.++.+.......+...+..+.+.+|||+|+++++.++..++..++++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999888888887777777767665789999999999999999999999999999999
Q ss_pred eCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHh---CCeEEEEec
Q 027949 96 DVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFETSA 160 (216)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~Sa 160 (216)
|..+. .++.....|...+........|+++|+||+|+..... .............. ...++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 99994 4555566788888887766799999999999965421 11222222222222 234899999
Q ss_pred C--CCCCHHHHHHHHHHHHHHHhhcc
Q 027949 161 K--TNLNVEEVFFSIARDIKQRLADT 184 (216)
Q Consensus 161 ~--~~~gi~~l~~~l~~~i~~~~~~~ 184 (216)
+ ++.+++++|..+...+.+.....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 9 99999999999999997654443
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=1.9e-23 Score=150.70 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=111.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEE
Q 027949 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGI 91 (216)
Q Consensus 20 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ 91 (216)
|+|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||...+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875555556666666667777776 57899999998765542 34455 489999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|+|+.+++... .++..+.. .+.|+++|+||+|+.+.. .. ......+...++++++++||.+|.|++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 9999998865432 23333332 268999999999986432 12 2234566777789999999999999999999
Q ss_pred HHHHHH
Q 027949 172 SIARDI 177 (216)
Q Consensus 172 ~l~~~i 177 (216)
+|.+..
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 998763
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3.8e-23 Score=147.18 Aligned_cols=155 Identities=53% Similarity=0.877 Sum_probs=120.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 027949 20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 20 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (216)
|+|++|+|||||++++.+... .....++. .+.....+........+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 44444444 6666667776667789999999999888777788889999999999999
Q ss_pred CHhHHHHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 99 DESSFNNIRNW-IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
++.++.....| ...+......+.|+++|+||+|+.+............+.....++++++|+.++.|+.+++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 99998888876 223333444579999999999986432221111134445555689999999999999999999863
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=3e-23 Score=167.05 Aligned_cols=155 Identities=23% Similarity=0.223 Sum_probs=114.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (216)
+..++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+. ..+.+|||+|.. .+... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 34489999999999999999999998765444455566777777777432 578999999972 12221 22
Q ss_pred ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
.+.++|++++|+|++++.+......|...+......+.|+++|+||+|+.+.. ..... .....+++++||++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~------~v~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP------RIERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH------hHHHH-HhCCCCEEEEEccCC
Confidence 46789999999999999887777666665555444468999999999985421 11111 112246899999999
Q ss_pred CCHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARD 176 (216)
Q Consensus 164 ~gi~~l~~~l~~~ 176 (216)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.3e-23 Score=165.45 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=119.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccccccc---c
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTAYY---R 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~~---~ 86 (216)
....|+|+|.+|||||||+++|.+........+.++.......+.+++ ...+.+||+||..+. ..+...|+ .
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 446899999999999999999998765433334455666666776654 257899999997432 22333444 4
Q ss_pred cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949 87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.++++++|+|+++. +.+..+..|..++..+.. ...|++||+||+|+.+. ....+....+....+.+++++||+
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISAL 312 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEcc
Confidence 69999999999976 677777777777765532 36899999999998653 222344555666667899999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDI 177 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i 177 (216)
+++|+++++.+|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=8.6e-24 Score=150.15 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccccEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 91 (216)
||+++|.+|+|||||+++|.+..+. +.++.+ +.+.. .+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999987652 222221 22222 579999972 233332 247899999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVF 170 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~ 170 (216)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+....++...+. +++++||++|.|++++|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999987654 2343221 249999999999854 23345666777777775 89999999999999999
Q ss_pred HHHH
Q 027949 171 FSIA 174 (216)
Q Consensus 171 ~~l~ 174 (216)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.6e-23 Score=156.47 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc--CCCCCcc------------ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (216)
-+|+++|.+++|||||+++|+. ..+...+ ..+.+.+.......++...+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 3333221 1112222333333333334789999999999999889
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCCe
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD-------EYGIK 154 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 154 (216)
..+++.+|++++|+|+++.. +.....++..+.. .+.|+++|+||+|+.+.......+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2222333333332 3689999999999864322222344444442 23678
Q ss_pred EEEEecCCCCCHHHH------HHHHHHHHHHH
Q 027949 155 FFETSAKTNLNVEEV------FFSIARDIKQR 180 (216)
Q Consensus 155 ~~~~Sa~~~~gi~~l------~~~l~~~i~~~ 180 (216)
++++||++|.|++++ .++|++.+.++
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999887554 44555555543
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=6.6e-24 Score=159.37 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=103.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITT 82 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~ 82 (216)
..++|+++|.+|+|||||+++|.+..+.....++.+.. ...+.+. .+.+||||| .+.++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45899999999999999999999987665555555433 3333333 588999999 344555444
Q ss_pred cccc----cccEEEEEEeCCCHhHHH----------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027949 83 AYYR----GAMGILLVYDVTDESSFN----------NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA 148 (216)
Q Consensus 83 ~~~~----~~d~~i~v~d~~~~~~~~----------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 148 (216)
.++. .++++++|+|.+....+. ....++..+.. .+.|+++|+||+|+.+.. .+....+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence 4443 457888899886532110 01112222222 368999999999985422 23445555
Q ss_pred HHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 149 DEYGI---------KFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 149 ~~~~~---------~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
..++. +++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 55554 5899999999 999999999987654
No 148
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.5e-22 Score=164.43 Aligned_cols=160 Identities=20% Similarity=0.257 Sum_probs=120.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccc----ccccccccc---c
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTITTAYY---R 86 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----~~~~~~~~~---~ 86 (216)
...|+|+|.||||||||+++|++........+.++.......+.++ + ..+.+||+||..+ ...+...|+ .
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 3489999999999999999999877543344555666666666665 4 5789999999642 222334444 4
Q ss_pred cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949 87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.++++|+|+|+++. +.+.....|...+..+.. .+.|++||+||+|+.+ ..+.+..+...++.+++++||+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~ 310 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISAL 310 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCC
Confidence 58999999999865 566777777777766543 3689999999999843 1234555666666889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027949 162 TNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~~ 181 (216)
+++|+++++++|.+.+.+..
T Consensus 311 tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 311 TGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCHHHHHHHHHHHHHhCc
Confidence 99999999999998876643
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.6e-22 Score=145.55 Aligned_cols=146 Identities=24% Similarity=0.238 Sum_probs=107.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 86 (216)
++|+++|++|+|||||++++++.... ....++.+.+.....+..++ ..+.+|||||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 22334444455555566665 67899999997554321 234567
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||.++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 8999999999998776665544332 236899999999998653221 33444579999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 167 EEVFFSIARDI 177 (216)
Q Consensus 167 ~~l~~~l~~~i 177 (216)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.7e-22 Score=158.17 Aligned_cols=154 Identities=17% Similarity=0.062 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 87 (216)
+|+|+|.+|||||||+|+|++..+.. ...+.++..........++ ..+.+|||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987542 2333333333323333333 5789999999754211 12345688
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 166 (216)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+ ..........+....+. +++++||++|.|+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999999876553 233333332 2689999999999853 22222334444444444 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~i~~ 179 (216)
++++++|.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887633
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1.2e-22 Score=149.12 Aligned_cols=154 Identities=24% Similarity=0.267 Sum_probs=107.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccc----ccccc---ccccccccEE
Q 027949 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTIT---TAYYRGAMGI 91 (216)
Q Consensus 20 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~ 91 (216)
++|++|||||||+++|.+........+..+.+.....+.++ + ..+.+||+||... ...+. ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999987532223333444545555565 5 6789999999632 12222 2346789999
Q ss_pred EEEEeCCCH------hHHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949 92 LLVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 92 i~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
++|+|+.++ .++.....|...+..... .+.|+++|+||+|+.... ..............+..++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcCCCCCEEEE
Confidence 999999988 467777777666654432 268999999999985422 111111223334445789999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~ 176 (216)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=5.4e-22 Score=164.11 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=117.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (216)
..++|+++|.+|+|||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 448999999999999999999998754 233446666777777888887 67799999998654332 2356
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++++|++++|||++++.++... |+..+.. .+.|+++|+||+|+.+. ....++...+.+++.+||++ .
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-C
Confidence 7899999999999988776654 5554432 36899999999998542 12344556677899999998 6
Q ss_pred CHHHHHHHHHHHHHHHh
Q 027949 165 NVEEVFFSIARDIKQRL 181 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~~ 181 (216)
|++++|+.|.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 153
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.8e-22 Score=148.70 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=110.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccc----------------cceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
+|+|+|.+|+|||||+++|++........ .+.+.......+...+ ..+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 48999999999999999999877654331 1222233333344444 68899999999888888
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHH---------
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADE--------- 150 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~--------- 150 (216)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+.... .......++.....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888899999999999987654332 233333332 378999999999986421 12222333333332
Q ss_pred -----hCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 151 -----YGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 151 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
...+++++||++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 347899999999999999999998875
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=5.5e-22 Score=164.37 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=118.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccc---cccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTIT---TAYY 85 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~ 85 (216)
.....|+|+|.||||||||+++|++........+.++.......+.+.+ ..+.+||+||.... ..+. ...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 3457899999999999999999998765544446666777777787777 67899999996321 1111 2234
Q ss_pred ccccEEEEEEeCCCH----hHHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH
Q 027949 86 RGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHA-----------SDNVNKILVGNKADMDESKRAVPTSKGQALADE 150 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (216)
..+|++|+|+|+++. +.+..+..+..++..+. ....|++||+||+|+.+.. ...+........
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~ 312 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEA 312 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHH
Confidence 678999999999753 23444444444444332 1368999999999986422 122233333445
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 151 YGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 151 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
.+++++++||++++|+++++.+|.+.+...+.
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 57899999999999999999999999877654
No 155
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.4e-22 Score=136.05 Aligned_cols=157 Identities=22% Similarity=0.445 Sum_probs=127.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+.+|..++||||++..|..... ....|+.+ +.+.++.+.+ +.+.+||.+|++..+..|+.|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 358999999999999999999987653 34556666 6667777777 899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 167 (216)
|+|..+.+.++++++.+..+.... -...|++|.+||.|++.+ ..++++.++.. ...+.+.+++|.+|+|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999999988888888666654432 257899999999999764 34555555543 233788999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 168 EVFFSIARDIK 178 (216)
Q Consensus 168 ~l~~~l~~~i~ 178 (216)
+-|.||...+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999987653
No 156
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=7.6e-22 Score=158.68 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=109.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccc-------cc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~ 83 (216)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ .++.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887642 1222333344445566666 5789999999743 22211 12
Q ss_pred ccccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA 160 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (216)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ....+..++.... ..++++||
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence 36789999999997653 33332 344444332 4677889999998531 2344555555443 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 027949 161 KTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~~ 181 (216)
++|.|+++++++|.+.+.+..
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCC
Confidence 999999999999988765543
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=3.2e-22 Score=144.03 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=102.3
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccccc
Q 027949 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (216)
Q Consensus 19 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 89 (216)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 12233344445555556666 6789999999876443 2345678899
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 168 (216)
++++|+|..++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. +++++|+++|.|+++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHHH
Confidence 99999999875443332 12222322 25899999999998652211 222334555 889999999999999
Q ss_pred HHHHHHHHH
Q 027949 169 VFFSIARDI 177 (216)
Q Consensus 169 l~~~l~~~i 177 (216)
+|++|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=3.7e-22 Score=165.88 Aligned_cols=148 Identities=26% Similarity=0.243 Sum_probs=113.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 85 (216)
.++|+++|.+|+|||||+|+|++.+.. ....++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 389999999999999999999987642 34456666677777777877 67899999998654332 22357
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
+++|++++|+|++++.++.....|.. ..+.|+++|+||+|+.+... .. ...+.+++++||++|.|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCCC
Confidence 88999999999999877665433332 33689999999999864221 11 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~i~~ 179 (216)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.2e-22 Score=167.01 Aligned_cols=162 Identities=22% Similarity=0.206 Sum_probs=114.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~- 81 (216)
..++|+|+|.+|+|||||+++|++.... ....++.+.+.....+.+++ ..+.+|||||... +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 4599999999999999999999988753 44556666666667777777 4567999999522 22221
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHH-HHHHhCCeEEEEe
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQA-LADEYGIKFFETS 159 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~~~~S 159 (216)
..+++.+|++|+|+|++++.++.... ++..+.. .+.|+++|+||+|+.+.... ....+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23568899999999999987776653 3333333 37899999999998642111 11111211 1222236899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 027949 160 AKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~ 181 (216)
|++|.|++++|+.+.+.+....
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988775443
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.5e-22 Score=165.88 Aligned_cols=155 Identities=20% Similarity=0.227 Sum_probs=111.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (216)
....+|+|+|.+|||||||+++|++.... ....++.+.+.....+.+++ ..+.+|||||.+. +......
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 34479999999999999999999987643 34556666667777777777 5688999999752 2233455
Q ss_pred ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
+++.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+....+ ..+. .++++||++
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~--~~g~~~~~~iSA~~ 183 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW--SLGLGEPHPVSALH 183 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH--hcCCCCeEEEEcCC
Confidence 6789999999999998755432 233333332 368999999999985321 1122222 2333 457999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~~ 179 (216)
|.|++++|++|++.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988755
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=3.4e-22 Score=137.66 Aligned_cols=167 Identities=24% Similarity=0.506 Sum_probs=146.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||.++|.+..|||||+-.+.+.++..++..+.+..+...++...+..+.+.|||.+|++++..+.......+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 48999999999999999999999999888999999999999999999999999999999999999998888899999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC----CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM----DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
||++++.++..+..|++.........+| ++|++|.|+ +++.+......++.+++-.+++.|++|+..+.++.++|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 9999999999999999988776654455 567999995 33334444566788888889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027949 171 FSIARDIKQRLA 182 (216)
Q Consensus 171 ~~l~~~i~~~~~ 182 (216)
..+...+..-..
T Consensus 179 K~vlAklFnL~~ 190 (205)
T KOG1673|consen 179 KIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHhCCce
Confidence 998887765433
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=9.2e-22 Score=161.90 Aligned_cols=159 Identities=22% Similarity=0.221 Sum_probs=114.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYYR 86 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~ 86 (216)
..+|+|+|.+|||||||+|+|++..+.....++.+.+.....+.+.+. ..+.+|||+|.... ...+. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999988765445556666776667776552 26789999997321 11222 2357
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEecCCCCC
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 165 (216)
.+|++|+|+|++++.++..+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++.+||++|.|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCCCC
Confidence 899999999999998777765555545444444789999999999853211 1111 1123444 58899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~i~~~ 180 (216)
+++++++|.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988654
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=5.2e-22 Score=148.05 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=102.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC----CCC---CccccceeeeEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG----SFT---TSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 76 (216)
++|+++|.+|+|||||+++|+.. .+. ....++.+.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1222333444444444443 2347899999999865
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHH-H-----
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALA-D----- 149 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~-~----- 149 (216)
+..........+|++++|+|+.+.........+. +.... +.|+++|+||+|+.... .....++..+.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333333446689999999998754333322222 11222 57999999999985321 111122222211 1
Q ss_pred -HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 150 -EYGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 150 -~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
..+++++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 164
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=6.1e-22 Score=136.43 Aligned_cols=114 Identities=38% Similarity=0.671 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
||+|+|++|||||||+++|++.... ....+..+................+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22333344445555667777777799999999998888888889999999999
Q ss_pred EeCCCHhHHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027949 95 YDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 131 (216)
||++++.++..+..+ +..+.... .+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999987554 55555433 3599999999998
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.4e-21 Score=141.12 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc----cccccccccccEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTAYYRGAMGIL 92 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i 92 (216)
+|+++|.+|+|||||+++|.+..... . ....+.+... .+||+||..... ......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~-------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--R-------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--c-------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988654211 1 1122233332 269999963211 11122367899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--eEEEEecCCCCCHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEEVF 170 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.+ ...+...+++...++ +++++||++|.|++++|
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999998865422 333332 12579999999999854 234556677777774 89999999999999999
Q ss_pred HHHHHHHHHH
Q 027949 171 FSIARDIKQR 180 (216)
Q Consensus 171 ~~l~~~i~~~ 180 (216)
++|.+.+.+.
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 9998877654
No 166
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.7e-22 Score=141.71 Aligned_cols=164 Identities=24% Similarity=0.381 Sum_probs=124.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC---CCC----CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG---SFT----TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (216)
+..+.|+++|..++|||||+.++... .+- ..-.++.+ ....++..++ ..+.+||.+|++..+++|..+|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence 34478999999999999999886432 111 22334444 5556666665 6889999999999999999999
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEecC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAK 161 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~ 161 (216)
..+|++||+||+++++.|+.....+..+.. ..-.+.|+++.+||.|+.++............+... ..++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999999888776655543 334689999999999986543333333333323322 3789999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~ 180 (216)
+|+||++...|++..+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999988776
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=6.5e-21 Score=139.24 Aligned_cols=155 Identities=25% Similarity=0.210 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------cccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITTA 83 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~ 83 (216)
++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.+||+||...... ....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 78999999999999999999987632 22333444444444555666 4578999999643211 0122
Q ss_pred ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCeEEEEe
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY----GIKFFETS 159 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~S 159 (216)
.++.+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+.+............+.... ..+++++|
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 45689999999999988664443 22222222 268999999999986532111111122222332 36899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARD 176 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~ 176 (216)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=1.2e-20 Score=157.13 Aligned_cols=160 Identities=25% Similarity=0.183 Sum_probs=112.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (216)
...++|+++|.+|+|||||+++|++.+.. ....++.+.+.....+..++ ..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 44589999999999999999999987643 33445555555556666666 478899999975433221
Q ss_pred -ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH----hCCeE
Q 027949 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADE----YGIKF 155 (216)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~ 155 (216)
...++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+ .....+... .+... ..+++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCce
Confidence 23578899999999999876655542 3333332 3689999999999862 111112222 22122 23799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 156 FETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 156 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
+++||++|.|++++|+++.+.+...
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999877654
No 169
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=7e-21 Score=155.05 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=118.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----cc---cccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT---TAYYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~ 87 (216)
...|+|+|.||||||||+|+|++........+.++.......+.+.+. ..+.++|+||...-.. +. ...+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 348999999999999999999987765555566666777777776531 3589999999743211 11 123677
Q ss_pred ccEEEEEEeCC---CHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949 88 AMGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA 160 (216)
Q Consensus 88 ~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (216)
++++++|+|++ +.+.+.....|+..+..+.. ...|+++|+||+|+.+. ....+.+..+....+ .+++.+||
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 99999999988 44566666777777765432 35899999999998542 112233444544444 37899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~ 180 (216)
+++.|+++++++|.+.+.+.
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhC
Confidence 99999999999999988664
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.86 E-value=4e-21 Score=164.17 Aligned_cols=156 Identities=22% Similarity=0.326 Sum_probs=114.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC-------CCCccc--------cceeeeEEEEEEEE---CCeEEEEEEEeCCCcccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI--------TTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~ 77 (216)
=+|+++|..++|||||+++|+... +...+. .+.+.......+.+ ++..+.+.||||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998742 111111 22333333333444 466689999999999999
Q ss_pred ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---e
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI---K 154 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~ 154 (216)
...+..+++.+|++|+|+|+++..+......|...+. .+.|+++|+||+|+.+.. ......++...+++ .
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcce
Confidence 8888899999999999999998766666655554332 268999999999985421 12233445555554 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 027949 155 FFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 155 ~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
++++||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988763
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1.4e-20 Score=160.16 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=112.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|..++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4478999999999999999999998877666566665665566666542 278999999999999888888899999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---------CeEEEEecCCCC
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETSAKTNL 164 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 164 (216)
|+|+++......... +..+ ...+.|+++++||+|+.+. ..+.....+...+ .+++++||++|+
T Consensus 165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 999987422122211 1222 1236899999999998542 2223333332222 479999999999
Q ss_pred CHHHHHHHHHH
Q 027949 165 NVEEVFFSIAR 175 (216)
Q Consensus 165 gi~~l~~~l~~ 175 (216)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=5.5e-21 Score=142.85 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=103.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~ 80 (216)
..+..++|+|+|.+|+|||||+++|++..+.....++.+..........+ ..+.+|||||.. .+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34466899999999999999999999876443344443333333323222 578999999942 23333
Q ss_pred ccccccc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEE
Q 027949 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYGIKFF 156 (216)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (216)
...+++. .+++++++|..++...... .+...+.. .+.|+++++||+|+.+... ....+.+..+......+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3444443 4678888998775433221 11122221 2689999999999854221 1112223344444367999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
++||++|.|+++++++|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999987664
No 173
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=3.7e-21 Score=144.58 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEEC---------------------------C----
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELD---------------------------G---- 61 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (216)
++|+++|..|+|||||++.+.+.... .......+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999999765221 1111111111111111111 0
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVP 140 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~ 140 (216)
....+.|||+||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+.+... ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1167899999999888777777778899999999998742111111222222222 1357899999999854211 111
Q ss_pred hHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 141 TSKGQALADEY---GIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
.+.++.+.... +++++++||++|+|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23333333332 57899999999999999999998644
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=2.1e-20 Score=135.51 Aligned_cols=155 Identities=18% Similarity=0.134 Sum_probs=101.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 85 (216)
..+|+++|++|+|||||++++++........ +..+.......+... ...+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 4789999999999999999999876532221 111211222222223 36789999999654322 223456
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL 164 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (216)
..+|++++|+|+.++.. .....+...+... +.|+++|+||+|+... .....+....+....+ .+++++|++++.
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 78999999999998721 1112222333322 5899999999998532 2222333444444443 689999999999
Q ss_pred CHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARD 176 (216)
Q Consensus 165 gi~~l~~~l~~~ 176 (216)
|+++++++|.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999999765
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=6.9e-21 Score=140.44 Aligned_cols=149 Identities=16% Similarity=0.185 Sum_probs=95.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (216)
+...++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+||+||.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35568999999999999999999998764333333333333333333333 68999999952 233333
Q ss_pred ccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC--CeE
Q 027949 82 TAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADEYG--IKF 155 (216)
Q Consensus 82 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~ 155 (216)
..+++ .++++++|+|++++-+.... .++..+.. .+.|+++|+||+|+.++. .....++++......+ +.+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 34444 35799999999875443333 22233322 268999999999985422 1222344455555544 589
Q ss_pred EEEecCCCCCHH
Q 027949 156 FETSAKTNLNVE 167 (216)
Q Consensus 156 ~~~Sa~~~~gi~ 167 (216)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=1.5e-20 Score=163.56 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=113.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
.....|+|+|..++|||||+++|.+..+.....++.+.+.....+.+++ ..++||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4558899999999999999999998877655555555555555666766 67899999999999988888889999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhC--CeEEEEecCCCCCHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ---ALADEYG--IKFFETSAKTNLNVE 167 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~gi~ 167 (216)
+|||+.+...-.....| ..+ ...+.|++|++||+|+.+........++. .+...++ ++++++||++|.|++
T Consensus 366 LVVdAddGv~~qT~e~i-~~a---~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI-NHA---KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEECCCCCCHhHHHHH-HHH---HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999874221111111 112 22378999999999985421110111111 1122333 689999999999999
Q ss_pred HHHHHHHHH
Q 027949 168 EVFFSIARD 176 (216)
Q Consensus 168 ~l~~~l~~~ 176 (216)
++|++|...
T Consensus 442 eLle~I~~~ 450 (787)
T PRK05306 442 ELLEAILLQ 450 (787)
T ss_pred HHHHhhhhh
Confidence 999998753
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=2.7e-20 Score=158.98 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+.|+++|..++|||||+++|++.. +..+..++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3344556666676666677776 78999999999988887788889999999
Q ss_pred EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc-cChHHHHHHHHHh----CCeEEEEecCCC
Q 027949 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA-VPTSKGQALADEY----GIKFFETSAKTN 163 (216)
Q Consensus 93 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~----~~~~~~~Sa~~~ 163 (216)
+|+|+++ +++.+.+. .+.. .+.| +++|+||+|+.+.... ...+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999988 44444332 2222 2567 9999999998652211 1233455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIKQ 179 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~ 179 (216)
.|+++++.+|.+.+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988776544
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=1.7e-20 Score=162.04 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=111.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE--EEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....|+|+|..++|||||+++|....+.....++.+.+..... +..++....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 34578999999999999999999987766544444443332222 3333445789999999999999988888999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH---HHHHhC--CeEEEEecCCCCC
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLN 165 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~g 165 (216)
+|+|+|+.+.........+ ..+. ..+.|++|++||+|+.+.........+.. +....+ ++++++||++|.|
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 9999999874322222111 1222 23689999999999864211101111111 122233 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDI 177 (216)
Q Consensus 166 i~~l~~~l~~~i 177 (216)
+++++++|....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999987753
No 179
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-23 Score=145.81 Aligned_cols=185 Identities=32% Similarity=0.565 Sum_probs=155.1
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE-EEEEEEeCCCcccccccccccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
..++.++++|+|..|+|||+++.+.....+...+..+.+.++.....+++..+ +.+.+||..|++++..+..-+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 35778999999999999999999999999999999999999998888887755 67889999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNL 164 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
+..+|||+++.-+|+....|.+.+..... ...|+++..||+|...............+.+++|+ .++++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998866432 34677888999998543222334677788889995 89999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 027949 165 NVEEVFFSIARDIKQRLADTDSRAEPQTIKI 195 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~ 195 (216)
+++|+...|++++.-+-.+.-+..++...++
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~ 211 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKI 211 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCccccccccccc
Confidence 9999999999999887555544444444333
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.6e-20 Score=155.26 Aligned_cols=146 Identities=23% Similarity=0.227 Sum_probs=106.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 86 (216)
.+|+|+|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 33445566667777777877 7899999999875 2222345678
Q ss_pred cccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949 87 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
.+|++|+|+|+.++.+.. .+..|+.. . +.|+++|+||+|+.+ . .....++ ..+++ .++++||.+|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~~--~---~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGPD--E---EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCcc--c---hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 899999999998753332 23333332 2 689999999999643 1 1222222 34555 4899999999
Q ss_pred CCHHHHHHHHHH
Q 027949 164 LNVEEVFFSIAR 175 (216)
Q Consensus 164 ~gi~~l~~~l~~ 175 (216)
.|+++++++|..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999987
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=8.8e-21 Score=140.95 Aligned_cols=159 Identities=22% Similarity=0.226 Sum_probs=109.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCC------------------ccccceeeeEEEEEEE--ECCeEEEEEEEeCCC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG 73 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G 73 (216)
...+|+|+|..++|||||+++|+...-.. +.....+.......+. ..+ ..++++|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence 45899999999999999999998644211 1112333444455555 455 7889999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh-
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADEY- 151 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~- 151 (216)
+..|.......++.+|++|+|+|+.+.... .....+..+... +.|++||+||+|+.........++.. .+....
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 988877777778899999999999876432 223333334333 68899999999986221111122222 333333
Q ss_pred -----CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 152 -----GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 152 -----~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.++++++||.+|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988753
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=3.1e-20 Score=158.76 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=111.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 027949 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (216)
Q Consensus 22 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 93 (216)
|.+|+|||||+|++.+......+.++.+.+.....+.+++ .++.+|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999887666677777777777777777 56899999998776543 23333 36899999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|+|+++.+.. ..+...+.+ .+.|+++|+||+|+.+.. .. ..+.+.+.+..+++++++||++|+|++++++++
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~-~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKK-GI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhC-CC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999875432 222222322 378999999999985422 22 234677788889999999999999999999999
Q ss_pred HHHH
Q 027949 174 ARDI 177 (216)
Q Consensus 174 ~~~i 177 (216)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=3.9e-20 Score=138.90 Aligned_cols=115 Identities=21% Similarity=0.427 Sum_probs=87.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc-cEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA-MGILL 93 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~ 93 (216)
+|+++|++|||||||+++|....+...+.++ . .....+... +....+.+||+||+..++..+..+++.+ +++||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-E--PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-e--ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 5899999999999999999998776554433 1 222222221 2346799999999999988888888998 99999
Q ss_pred EEeCCCH-hHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027949 94 VYDVTDE-SSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDE 134 (216)
Q Consensus 94 v~d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~ 134 (216)
|+|+.+. .++..+..|+..+... ...+.|++|++||+|+..
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9999987 6777776665544322 224799999999999864
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1e-19 Score=151.71 Aligned_cols=160 Identities=26% Similarity=0.205 Sum_probs=110.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 80 (216)
...++|+|+|.+|+|||||+++|++... .....++.+.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3469999999999999999999998753 334455555555555566666 56789999996432211
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----hCCeEE
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE----YGIKFF 156 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (216)
....++.+|++|+|+|++++.+..... +...+.. .+.|+++|+||+|+.+.. ...+....+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence 123567899999999999876655432 3333332 268999999999986321 111111112111 237999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
++||++|.|++++++++.+.+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998876554
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=6e-20 Score=145.51 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=103.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 85 (216)
.-.|+|+|.+|||||||+|+|++..+.... .+.++..........++ ..+.+|||||..... ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 357999999999999999999998764322 22222222222223333 689999999964322 1223356
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL 164 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (216)
..+|++++|+|++++.. ......+..+. ..+.|+++|+||+|+... ..........+....+ .+++++||+++.
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 78999999999988321 11122222222 226899999999998531 1222334444444444 689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIK 178 (216)
Q Consensus 165 gi~~l~~~l~~~i~ 178 (216)
|+++++++|.+.+.
T Consensus 158 gv~~L~~~L~~~l~ 171 (292)
T PRK00089 158 NVDELLDVIAKYLP 171 (292)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988764
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=5.5e-20 Score=153.13 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=109.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 87 (216)
+|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987643 33445666677777777877 568999999963 333445667789
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 166 (216)
+|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+.+... . ..+ ...++. .++++||.+|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~--~---~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDA--V---AAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccc--c---HHH-HHhcCCCCeEEEeCCcCCCh
Confidence 999999999987533222 112222222 2689999999999854221 1 122 234565 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~i~~ 179 (216)
+++++++.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887744
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.3e-19 Score=158.47 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=114.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~ 84 (216)
.++|+++|.+|+|||||+|+|++......+.++.+.+.....+..++ .++.+||+||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 37899999999999999999999876555567777666666666555 67899999998765431 1123
Q ss_pred c--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
+ ..+|++++|+|+++.+... .+...+.+ .+.|+++|+||+|+.+. . ....+...+.+.++++++++||.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~-~-~i~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEK-Q-NIRIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhc-c-CcHHHHHHHHHHhCCCEEEEEeec
Confidence 2 4789999999998865422 23333333 27899999999998532 2 223456777888999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDI 177 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i 177 (216)
|+|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988764
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-20 Score=133.21 Aligned_cols=186 Identities=26% Similarity=0.501 Sum_probs=154.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++++++|..|.||||++++.+..++...+.++.+.+.....+..+-..+.+..|||.|++.+..+.+.++-+....|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 34699999999999999999999999999999999999888888777666799999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
++||+...-++..+..|...+...+. ++|+++++||.|..+.. .......+.+..++.|++.||+.+.+++.-|.|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHH
Confidence 99999999999999999999988876 59999999999975422 233444566677789999999999999999999
Q ss_pred HHHHHHHHhhccc---CCCCCccccccCCCCcc
Q 027949 173 IARDIKQRLADTD---SRAEPQTIKINQPDQAG 202 (216)
Q Consensus 173 l~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~ 202 (216)
+.+.+.-...-.- .-..|..+..+...+.|
T Consensus 164 LarKl~G~p~Lefva~paLaPpev~~d~~~~~q 196 (216)
T KOG0096|consen 164 LARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQ 196 (216)
T ss_pred HhhhhcCCCCeEEEeccccCCCeeeccchhhHH
Confidence 9998876544322 22334455555554443
No 189
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.1e-21 Score=131.26 Aligned_cols=159 Identities=23% Similarity=0.398 Sum_probs=119.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|.-|+||||++.++.-.+... ..|+.+ +.+..+.+.+ .++.+||.+|+-+.+..|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEEE
Confidence 45899999999999999999888776543 344444 4455555666 889999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q 027949 94 VYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 167 (216)
|+|.+|.+........+..+ .+..-....++|++||.|.... ....++... .+..-+.+|.+||.+|+|++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh---hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999998777666644444 3333345777888999997532 222222111 12223799999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 168 EVFFSIARDIKQR 180 (216)
Q Consensus 168 ~l~~~l~~~i~~~ 180 (216)
..++||.+.+.++
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987653
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.6e-19 Score=158.05 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=109.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT 81 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~ 81 (216)
......+|+|+|.+|+|||||+|+|++.... ....++.+.+.......+++ ..+.+|||||... +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3445588999999999999999999987642 34456666666666667777 5788999999653 22233
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
..+++.+|++|+|+|+.+.-.... ..|...+.. .+.|+++|+||+|+.... .....+. .++. ..+++||
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iSA 418 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPISA 418 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEEC
Confidence 456788999999999976422111 133334432 378999999999974311 1122222 2232 4679999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~ 179 (216)
++|.|+++++++|++.+..
T Consensus 419 ~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCchHHHHHHHHhccc
Confidence 9999999999999988754
No 191
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=127.53 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=121.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+++|..++|||||++.|.+.+.. +..|+.+ +....+.+++. +.+++||.+|+...+..|.+||.+.|++||
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence 4499999999999999999999987754 4556665 55666677653 789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHH--HHHhCCeEEEEecCCCCCHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
|+|.+|...|+++...+.++.+ ..-...|+++..||.|+.-+...........+ .+..-+.+-+|||.+++|+.+-.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 9999999888887776555544 22346899999999997432221111111111 12223789999999999999999
Q ss_pred HHHHHHH
Q 027949 171 FSIARDI 177 (216)
Q Consensus 171 ~~l~~~i 177 (216)
+|+..+.
T Consensus 172 ~wv~sn~ 178 (185)
T KOG0074|consen 172 DWVQSNP 178 (185)
T ss_pred hhhhcCC
Confidence 9887543
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=6.5e-20 Score=131.71 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=102.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------ccccccccccEE
Q 027949 20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI 91 (216)
Q Consensus 20 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~ 91 (216)
|+|++|+|||||++++.+.... .......+.......+.... ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 33333333334333433331 36889999999765443 233467889999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH--HHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|+.++....... +...+. ..+.|+++|+||+|+.......... .........+.+++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999887665554 222222 2378999999999986432111111 112222333579999999999999999
Q ss_pred HHHHHHH
Q 027949 170 FFSIARD 176 (216)
Q Consensus 170 ~~~l~~~ 176 (216)
+.+|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
No 193
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=9.2e-20 Score=155.99 Aligned_cols=159 Identities=26% Similarity=0.316 Sum_probs=113.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 75 (216)
..-+|+|+|..++|||||+.+|+... +.. +...+.+.......+.+ ++..+.++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44589999999999999999997632 110 11122222222333333 4556899999999999
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-- 153 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 153 (216)
.|...+..+++.+|++|+|+|+++.........|..... .+.|+++|+||+|+.+.. .......+...+++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCCc
Confidence 998888889999999999999998755555545543321 268999999999985422 12223344444554
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 154 -KFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 154 -~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
.++++||++|.|+++++++|.+.+..
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 48999999999999999999987653
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=9.8e-20 Score=146.60 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=112.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 85 (216)
..|+++|.||+|||||+|+|++.... .+..|+.+.+..+....+.+ ..+.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998765 66778999999999999988 558899999966322 2234456
Q ss_pred ccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949 86 RGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKT 162 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (216)
..+|++|||+|+...-+ -..+.+++ . . .+.|+++|+||+|-.. .+....-...+| ..++.+||.+
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceEeehhh
Confidence 78999999999976332 12222232 2 2 2689999999999421 122222233445 4899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIK 178 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~ 178 (216)
|.|+++|++++++.+.
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999999974
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=158.82 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=111.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T 81 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 81 (216)
..++|+++|.+|+|||||+++|++.+.. ....++++.+.....+.+++ ..+.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999998742 33445556666666677777 4567999999532 1111 1
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-HHh----CCeEE
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-DEY----GIKFF 156 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~----~~~~~ 156 (216)
...++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+... .+...... ... ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 23467899999999999887766654 3333332 3689999999999864211 12222211 111 25789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
++||++|.|++++++.+.+.+.+.
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887754
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=8e-19 Score=124.92 Aligned_cols=158 Identities=21% Similarity=0.316 Sum_probs=119.1
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-------cccc---eeeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------FITT---IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (216)
.....||+|.|+.++|||||++++........ .... .+.-.....+..++. ..+.+++|||+++|+.+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHH
Confidence 34568999999999999999999998764111 1111 222233333333332 478899999999999999
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEe
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETS 159 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~S 159 (216)
..+.+.+.++|+++|.+++..+ +....+..+....+ .|++|.+||.||.+ ....+.++++.... .+++++.+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeeee
Confidence 9999999999999999999888 55555555544432 89999999999965 34566666666544 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARD 176 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~ 176 (216)
|+++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988887765
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=1.1e-18 Score=133.51 Aligned_cols=151 Identities=23% Similarity=0.211 Sum_probs=104.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 89 (216)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+.+||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764433334445556667777777 688999999974322 12345678999
Q ss_pred EEEEEEeCCCHhH-HHHHHHHHHH-----------------------------------------HHHh-----------
Q 027949 90 GILLVYDVTDESS-FNNIRNWIRN-----------------------------------------IEQH----------- 116 (216)
Q Consensus 90 ~~i~v~d~~~~~~-~~~~~~~~~~-----------------------------------------~~~~----------- 116 (216)
++++|+|+++++. ...+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987652 2222222211 0000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 117 -----------A--SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 117 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
. ....|+++|+||+|+.+ .+++..++.. ..++++||++|.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01368999999999843 2334444432 4689999999999999999988754
No 198
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-18 Score=119.74 Aligned_cols=169 Identities=27% Similarity=0.410 Sum_probs=134.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC--CccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccc-cccccccccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAM 89 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 89 (216)
...||+|+|..++|||+++++++-.+.. .+..+|.. +.+...++. ++..-.+.|+||.|.... ..+...++.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3479999999999999999998765433 33445443 344444443 454567899999998766 557788889999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
++++||+..++++|..+..+...|..... ...|+++++||+|+.+ ......+.+..++....+..+++++.+...+-+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence 99999999999999998877777765433 4699999999999864 567888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027949 169 VFFSIARDIKQRLADT 184 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~ 184 (216)
-|.++...+.+-+.++
T Consensus 166 pf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 166 PFTYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHHHhccCCcccc
Confidence 9999988776655443
No 199
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=4.4e-19 Score=135.77 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=106.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~ 84 (216)
..--|+++|.||+|||||+|++.+....-.+. +.++.......++.++ .++.++||||...-.. .....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 45679999999999999999999998764333 3333333334444443 7899999999654322 23445
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN 163 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (216)
+..+|+++||+|+.++-.. .....+..+.. .+.|+++++||+|..+.... .......+..... ..++++||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeecccc
Confidence 6789999999999874322 11122233332 25799999999997653221 1222222222333 48999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIKQ 179 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~ 179 (216)
.|++.|.+.+..++.+
T Consensus 158 ~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 158 DNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999988877654
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=2.4e-19 Score=148.87 Aligned_cols=154 Identities=20% Similarity=0.130 Sum_probs=104.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC--CCC-----------------------------CccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+++|+.. .+. .+...+.+.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45599999999999999999999852 111 11233555555555555555
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKILVGNKADMDESKRA- 138 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 138 (216)
+.+.|||+||++.|.......+..+|++|+|+|+++.++... ....+ .+..... ..|++||+||+|+.+....
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 789999999998876656666789999999999998743211 11111 1222221 3578899999998642111
Q ss_pred --cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q 027949 139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 170 (216)
...+++..++...+ ++++++||++|.|+++.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12345566666555 689999999999998754
No 201
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=6.4e-19 Score=142.28 Aligned_cols=152 Identities=23% Similarity=0.232 Sum_probs=116.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~ 86 (216)
++++++|.||+|||||+|.|++.+.. ....++++.+.....+..+| +.+.++||+|..+..... ...+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 89999999999999999999998765 66778888899999999999 889999999976544432 33457
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
++|.++||+|.+.+.+-.... . ......+.|+++|.||.||...... ..+....+.+++.+|+++|+|+
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~-~----~~~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLA-L----IELLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGEGL 364 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHH-H----HHhcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCccCH
Confidence 899999999999862212211 1 1133457899999999999653221 1111223347899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888777
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=8.9e-19 Score=149.01 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=103.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~ 79 (216)
.-|+++|.+++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 468999999999999999999887654332222211111111111 0012388999999999998
Q ss_pred ccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----------ChHH--
Q 027949 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-----------PTSK-- 143 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----------~~~~-- 143 (216)
++..+++.+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+.+..... ....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 88888999999999999987 44444332 1221 268999999999985321000 0000
Q ss_pred ----------HHHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 144 ----------GQALAD------------EY--GIKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 144 ----------~~~~~~------------~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
...+.. .. .++++++||++|+|+++++.+|......
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001110 11 2689999999999999999998765443
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=3.3e-19 Score=124.10 Aligned_cols=135 Identities=25% Similarity=0.297 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL 92 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (216)
||+|+|+.|||||||+++|.+.+.. +..|.... +.+ .++||||-- .+.........++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999987653 33332221 222 246999942 23333333446899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 171 (216)
++.|++++.+.-. ..+.... +.|++=|+||+|+.. .....+.++++.+..|+ .+|.+|+.+|+|+++|.+
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998753211 1122222 589999999999863 23466778888888886 789999999999999999
Q ss_pred HHH
Q 027949 172 SIA 174 (216)
Q Consensus 172 ~l~ 174 (216)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=5.2e-19 Score=146.84 Aligned_cols=154 Identities=21% Similarity=0.149 Sum_probs=102.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+++|||||+++|+...-. .+..++.+.+.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35599999999999999999999843211 12245555566555565555
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKR--- 137 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--- 137 (216)
+.+.+|||||++.|.......+..+|++|+|+|++++..+ ......+..+... . ..|+++++||+|+.+...
T Consensus 84 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 84 --YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred --eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHH
Confidence 7899999999987765555556789999999999873111 1111222222222 1 246899999999864211
Q ss_pred ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q 027949 138 AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 170 (216)
....+++..++...+ ++++++||++|+|+++++
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 112244555555554 579999999999998854
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=3.7e-18 Score=137.57 Aligned_cols=163 Identities=26% Similarity=0.206 Sum_probs=116.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------T 81 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 81 (216)
..++|+|+|.||+|||||+|+|++.+.. ....++++.+.....+++++ ..+.++||+|...-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999998753 56677888888888888888 56788999994321111 2
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh---C-CeEE
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADEY---G-IKFF 156 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~---~-~~~~ 156 (216)
...+..+|++++|+|++.+-+..+. .....+.+ .+.++++|+||+|+.+... ...++.+ .+-..+ + .+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~-~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDE-ATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchh-hHHHHHHHHHHHHhccccCCeEE
Confidence 2345679999999999987654443 22222332 3789999999999865321 2222222 222222 2 6999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
.+||.+|.|+.++|+++.+........
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHhccc
Confidence 999999999999999988877665443
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=1.1e-18 Score=126.75 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 86 (216)
.|+++|.+|+|||||++.+.+........++.+.......+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444444444334444444444 788999999432 2333333433
Q ss_pred ---cccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHH--HhCCeEEEE
Q 027949 87 ---GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALAD--EYGIKFFET 158 (216)
Q Consensus 87 ---~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 158 (216)
..+++++++|..+... ...+..|+... +.|+++|+||+|+...... ........... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578899999876532 22233343322 5799999999998532211 11122222222 233689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~ 176 (216)
|++++.|+++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 207
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=1.9e-18 Score=132.08 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=116.1
Q ss_pred ccccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEE-EEEECCeEEEEEEEeCCCccc-------
Q 027949 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR-TIELDGKRIKLQIWDTAGQER------- 76 (216)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~------- 76 (216)
+.+.+++..+.+.|+|+|+||+|||||.|.+.+..+........++..... .++.+. .++.|+||||.-.
T Consensus 62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~ 139 (379)
T KOG1423|consen 62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRH 139 (379)
T ss_pred cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhH
Confidence 445666778899999999999999999999999998765555444443333 333333 7999999999321
Q ss_pred -----cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------cc
Q 027949 77 -----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR------------AV 139 (216)
Q Consensus 77 -----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~ 139 (216)
+.......+..+|.+++++|++++.....- ..+..+..+. ..|-++|+||.|...... ..
T Consensus 140 ~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l 216 (379)
T KOG1423|consen 140 HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGEL 216 (379)
T ss_pred HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhcccccc
Confidence 111223345679999999999964322211 1233344443 678899999999633111 11
Q ss_pred C---hHHHHHHHH---------HhCC----eEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949 140 P---TSKGQALAD---------EYGI----KFFETSAKTNLNVEEVFFSIARDIKQRLADTDSR 187 (216)
Q Consensus 140 ~---~~~~~~~~~---------~~~~----~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 187 (216)
. .+...+|.. ..|+ .+|.+||++|+|++++.+||........++-+..
T Consensus 217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 1 111112211 1122 4899999999999999999998777665554443
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=3.4e-18 Score=145.94 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=109.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC--CCCCc--------------cccceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
..-+|+|+|..++|||||+++|+.. .+... ...+.+.......+.+++ +.+.+|||||+..|
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--~~inliDTPG~~df 81 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--YRINIVDTPGHADF 81 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--EEEEEEECCCcchh
Confidence 3468999999999999999999862 22211 112233333333444444 88999999999999
Q ss_pred ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE------- 150 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------- 150 (216)
...+..+++.+|++|+|+|+.+..... ...++..+.. .+.|.++++||+|+.++......+++..+...
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 988999999999999999998753222 2233333322 26899999999998654333333444444322
Q ss_pred hCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027949 151 YGIKFFETSAKTNL----------NVEEVFFSIARDIK 178 (216)
Q Consensus 151 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 178 (216)
..++++.+||.+|. |+..|++.|++.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 34789999999997 57777777766654
No 209
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=2e-18 Score=147.41 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCC--------------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG--SFTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
+|+|+|..++|||||+++|+.. .+.. +...+.+.......+.+++ +.+.||||||+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 6899999999999999999863 2211 1123344444455566766 78999999999999888
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCC
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD-------EYGI 153 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~ 153 (216)
+..+++.+|++++|+|+.+.. ......|+..+... +.|+++|+||+|+.++......+++..+.. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 888999999999999998642 23444555555443 689999999999865322212233333332 2346
Q ss_pred eEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027949 154 KFFETSAKTNL----------NVEEVFFSIARDIK 178 (216)
Q Consensus 154 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 178 (216)
+++.+||++|. |++.+|+.|++.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999995 79999988887764
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.3e-18 Score=131.28 Aligned_cols=148 Identities=23% Similarity=0.160 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-C------------------------------ccccceeeeEEEEEEEECCeEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT-T------------------------------SFITTIGIDFKIRTIELDGKRIK 65 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (216)
+|+|+|.+|+|||||+++|+...-. . +..++.+.+.....+.+++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 5899999999999999999764311 1 1113344455555555555 57
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---cChH
Q 027949 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA---VPTS 142 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~ 142 (216)
+.+|||||+..+.......++.+|++|+|+|++++..-.. ......+... . ..++++|+||+|+.+.... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998776555666789999999999987532111 1111222221 1 2457778999998542111 1123
Q ss_pred HHHHHHHHhC---CeEEEEecCCCCCHHHH
Q 027949 143 KGQALADEYG---IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 143 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~l 169 (216)
++..+...++ .+++++||++|.|+++.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 4445555555 45999999999998753
No 211
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=4.1e-18 Score=135.42 Aligned_cols=170 Identities=21% Similarity=0.159 Sum_probs=127.1
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTI 80 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~ 80 (216)
........|.++|..|+|||||+|.|++........-+.+.+...+.+.+.+ ...+.+-||.|.- .|.+
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks- 264 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS- 264 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-
Confidence 3445678999999999999999999998887766667777888888888875 2567888999942 1222
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
...-...+|+++.|+|+++|.....+......+.+......|+++|.||+|+..... ....+..... ..+.+||
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iSA 338 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFISA 338 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEEe
Confidence 222346799999999999998777777777777776556799999999999654221 1111111112 5899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949 161 KTNLNVEEVFFSIARDIKQRLADTDSR 187 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~~~~~~~~ 187 (216)
++|+|++.|+..|.+.+........-.
T Consensus 339 ~~~~gl~~L~~~i~~~l~~~~~~~~l~ 365 (411)
T COG2262 339 KTGEGLDLLRERIIELLSGLRTEVTLE 365 (411)
T ss_pred ccCcCHHHHHHHHHHHhhhcccceEEE
Confidence 999999999999999888665554433
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.2e-17 Score=128.11 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--------C----------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|..|+|||||+++|+...-. . +.....+.......+.+++ ..+.+|||||+..|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 4899999999999999999763211 0 1112222334445555665 789999999999888
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..+...++.+|++++|+|+.+.... ....++..+... +.|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 8888889999999999999876432 334444444332 689999999999854
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=2.4e-18 Score=141.81 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=103.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEE--------------EE----CC------eEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTI--------------EL----DG------KRIKL 66 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~~ 66 (216)
..++|+++|..++|||||+++|.+..... +.....+.......+ +. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 45899999999999999999997643221 111111111111100 01 11 13578
Q ss_pred EEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHH
Q 027949 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQ 145 (216)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~ 145 (216)
.+||+||++.|...+......+|++++|+|++++.........+..+.... ..|+++++||+|+.+.... ...+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 999999999887777777778999999999986431112222222222221 3568999999998642211 1123334
Q ss_pred HHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 146 ALADEY---GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 146 ~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.+.... +++++++||++|+|+++++++|...+.
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 444332 578999999999999999999987653
No 214
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=7.2e-18 Score=141.64 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=120.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 87 (216)
.+|+++|+||+|||||+|+|++.+....+.|+.+.+.....+.+.+ .++++.|+||..+... ..++|+ ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 6799999999999999999999998888899999999999999988 4588899999543322 223333 35
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
.|++|-|+|+++.+.--.+- + ++.+. +.|++++.|++|.. ++.-..-+...+.+.+|+++++++|++|+|++
T Consensus 82 ~D~ivnVvDAtnLeRnLylt--l-QLlE~---g~p~ilaLNm~D~A--~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLT--L-QLLEL---GIPMILALNMIDEA--KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCEEEEEcccchHHHHHHHH--H-HHHHc---CCCeEEEeccHhhH--HhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 69999999999876322221 1 22222 78999999999973 34444556777889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 168 EVFFSIARDIKQR 180 (216)
Q Consensus 168 ~l~~~l~~~i~~~ 180 (216)
++...+.+....+
T Consensus 154 ~l~~~i~~~~~~~ 166 (653)
T COG0370 154 ELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHhcccc
Confidence 9999988655444
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.4e-18 Score=132.14 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECCeEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK 65 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (216)
+|+++|..++|||||+.+|+...- ..+...+.+.+.....+.+.+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 489999999999999999864210 011223344455555566666 78
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEeCCCHhH------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-C-
Q 027949 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS------FNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-R- 137 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~- 137 (216)
+.+||+||+..+...+...++.+|++|+|+|+++... .......+.... .. ...|+++|+||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccccccccccH
Confidence 8999999987776666666788999999999988421 111222222222 22 136889999999986321 1
Q ss_pred ---ccChHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q 027949 138 ---AVPTSKGQALADEYG-----IKFFETSAKTNLNVE 167 (216)
Q Consensus 138 ---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 167 (216)
....+.+..+....+ ++++++||++|+|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111222333334433 679999999999987
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=4.7e-18 Score=140.07 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEE------------------C--C----eE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIEL------------------D--G----KR 63 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~ 63 (216)
.....++|+++|..++|||||+.+|.+.... .+...+.+.......+.+ + + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3455699999999999999999999764221 111222222221111111 0 0 12
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cCh
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPT 141 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~ 141 (216)
..+.|||+||++.|..........+|++++|+|+.++. ..... ..+..+.... ..|+++|+||+|+.+.... ...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDIIG--IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHcC--CCcEEEEEEeeccccchhHHHHH
Confidence 57899999999877655555556789999999998642 11111 1112222221 2468999999998642211 112
Q ss_pred HHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 142 SKGQALADEY---GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 142 ~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+++..++... +++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 3344444332 478999999999999999999987653
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=1.7e-17 Score=142.41 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
-|+++|..++|||||+++|++.+. ..+...+.+.+.....+.. ++ ..+.+||+||++.|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 478999999999999999997432 2334445555544444433 33 45889999999988766666788899999
Q ss_pred EEEeCCCH---hHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHhC---CeEEEEecCCCC
Q 027949 93 LVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNL 164 (216)
Q Consensus 93 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~ 164 (216)
+|+|+.+. .+.+.+ ..+... +.| ++||+||+|+.+... ....+++..+....+ .+++++||++|.
T Consensus 80 LVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 80 LVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 99999873 333332 222222 455 578999999864211 112234444544444 689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQ 179 (216)
Q Consensus 165 gi~~l~~~l~~~i~~ 179 (216)
|+++++++|.+....
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999865433
No 218
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=8.5e-18 Score=129.13 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=118.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---c
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---R 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~ 86 (216)
....|.++|.||+|||||+++|.+.....-..+.++..+...++.+++.. .+.+-|+||.-+ -+.+-..|+ .
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence 44568899999999999999999987665555566677778888777643 488999999543 223344454 4
Q ss_pred cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949 87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA 160 (216)
Q Consensus 87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
.++.++||+|++.+ ..|+++..+..++..+.. ...|.++|+||+|+++++ ...+.++...+.- .++++||
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEeee
Confidence 68999999999998 788888777666655432 468999999999985422 2234666666654 5999999
Q ss_pred CCCCCHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIAR 175 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~ 175 (216)
+.++|+.++++.|.+
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999999888765
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=2.3e-17 Score=140.85 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=100.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC------CeEE----------EEEEEeCCCcccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------GKRI----------KLQIWDTAGQERFRT 79 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~i~D~~G~~~~~~ 79 (216)
..|+++|.+++|||||+++|.+..+........+.+.....+..+ +... .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 579999999999999999998765443222222111111111110 1111 268999999999998
Q ss_pred ccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cC-----------h--H
Q 027949 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VP-----------T--S 142 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~-----------~--~ 142 (216)
++...+..+|++++|+|+++ +.++..+.. +.. .+.|+++++||+|+.+.... .. . .
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~ 159 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQ 159 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHH
Confidence 88888889999999999987 555544422 222 36899999999998421100 00 0 0
Q ss_pred --------HHHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 143 --------KGQALADEY---------------GIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 143 --------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
+...+.... .++++++||.+|+|+++++..+....
T Consensus 160 ~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 160 QELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 011111111 26899999999999999998886544
No 220
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.2e-17 Score=122.09 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+++|..++|||||+++|+.... ..+..++.+.+.....+..++ ..+.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCHHHHH
Confidence 38999999999999999999986310 011133344444333444444 678899999998777
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC---
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA--VPTSKGQALADEYG--- 152 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--- 152 (216)
......+..+|++++|+|+...-. ......+..+... +.| +++++||+|+...... ...+++..+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 666777788999999999976432 2222233333332 566 7788999998532211 12234555555443
Q ss_pred --CeEEEEecCCCCCHH
Q 027949 153 --IKFFETSAKTNLNVE 167 (216)
Q Consensus 153 --~~~~~~Sa~~~~gi~ 167 (216)
++++++||.+|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 689999999998863
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.6e-17 Score=118.97 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=106.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 81 (216)
.+....|+++|.+|+|||||||+|+++....-...+.|.+.....+.+++. +.++|.|| .+.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345578999999999999999999997743333344455567777777773 77899999 33455555
Q ss_pred ccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCe
Q 027949 82 TAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY----GIK 154 (216)
Q Consensus 82 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~ 154 (216)
..|+. +..++++++|+..+..-.+. +++..+... +.|++|++||+|-... ......+...+... .+.
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKK--SERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCcc
Confidence 66654 35678889999776443222 223333332 7999999999996431 11112222333222 233
Q ss_pred --EEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 155 --FFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 155 --~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
++.+|+.++.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999999887754
No 222
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=7.9e-18 Score=138.31 Aligned_cols=165 Identities=27% Similarity=0.378 Sum_probs=123.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|..|+||||||-.++..++.....+-.........+.-++ +..+|+|++..+..+.....-++.+|++.++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 39999999999999999999999988765554433222223333334 6688999987766666667888999999999
Q ss_pred EeCCCHhHHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHH-HHHHHHHhC-C-eEEEEecCCCCCHHH
Q 027949 95 YDVTDESSFNNIRN-WIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSK-GQALADEYG-I-KFFETSAKTNLNVEE 168 (216)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi~~ 168 (216)
|+.+++++++.+.. |+..+++... .++|+|+|+||+|...+... ..+. ..-+...+. + ..++|||++-.++.+
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 99999999999866 9988887663 57999999999998654333 1122 222222222 2 578999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027949 169 VFFSIARDIKQRLA 182 (216)
Q Consensus 169 l~~~l~~~i~~~~~ 182 (216)
+|.+..++++.-..
T Consensus 166 ~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 166 LFYYAQKAVIHPTS 179 (625)
T ss_pred hhhhhhheeeccCc
Confidence 99998888876443
No 223
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=3.6e-16 Score=118.88 Aligned_cols=152 Identities=17% Similarity=0.168 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcccc--------------c---------eeeeEE---------------EEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--------------T---------IGIDFK---------------IRTIE 58 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~--------------~---------~~~~~~---------------~~~~~ 58 (216)
||+++|..++|||||+++|....+...... + .+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987554321110 0 000000 01122
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 59 LDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
..+ ..+.++|+||+..|.......+ ..+|++++|+|+..... .....++..+... +.|+++|+||+|+.+..
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence 223 5788999999987755443333 36899999999876543 2222333333332 68999999999975421
Q ss_pred C-ccChHHHHHHHHH--------------------------hCCeEEEEecCCCCCHHHHHHHHH
Q 027949 137 R-AVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
. .....++..+... ..+++|.+||.+|+|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 1112222223221 124899999999999999988774
No 224
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=8e-17 Score=121.96 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCc-------------------cccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
+|+|+|..|+|||||+++|+....... ...+.+.......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987543211 1111111122222222 345688999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
..+......++..+|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888778888899999999999987655432 333333322 258999999999974
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.8e-16 Score=130.30 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++... ..+...+.+.+.. .+.+......+.++|+||+.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence 34569999999999999999999986311 0112334444433 33343334678899999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRAV--PTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++++|+|+.+..... ....+..+... +.| +++++||+|+.+..... ..+++..+....+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 77665555567899999999998642211 12222223322 577 57889999986422211 1234555555554
Q ss_pred -----CeEEEEecCCCC--------CHHHHHHHHHHH
Q 027949 153 -----IKFFETSAKTNL--------NVEEVFFSIARD 176 (216)
Q Consensus 153 -----~~~~~~Sa~~~~--------gi~~l~~~l~~~ 176 (216)
++++++||++|. ++.++++.|.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 589999999983 455555555544
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=121.87 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=117.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccc----cccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTI----TTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~----~~~~ 84 (216)
....|+|.|.||+|||||++++++........|.++...+...+..++ ..++++||||.- +.+.. ..+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 347899999999999999999999988877777777788888888877 678889999942 11111 1111
Q ss_pred cccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecC
Q 027949 85 YRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 161 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (216)
-.-.++++|+||.+.. .+.+.-..++..+..... .|+++|+||+|+.+. ...+++.......+ .....+++.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeee
Confidence 1236889999999864 345555567788877764 899999999998542 23344444444444 357888999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027949 162 TNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~~~ 182 (216)
.+.+++.+-..+.....+...
T Consensus 320 ~~~~~d~~~~~v~~~a~~~~~ 340 (346)
T COG1084 320 KGCGLDKLREEVRKTALEPLL 340 (346)
T ss_pred ehhhHHHHHHHHHHHhhchhh
Confidence 999999888888777555433
No 227
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=2.8e-16 Score=123.05 Aligned_cols=144 Identities=20% Similarity=0.273 Sum_probs=94.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--- 79 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--- 79 (216)
...++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.+|||||......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3569999999999999999999999876533 234444555556667788888999999999422110
Q ss_pred -----------------------ccccccc--cccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 80 -----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 80 -----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
.....+. .+|+++|+++.+... +... ...++.+.. ..|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcC
Confidence 1112222 478888888876421 1111 223333332 58999999999974
Q ss_pred CC-CCccChHHHHHHHHHhCCeEEEEecC
Q 027949 134 ES-KRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.. +.......+.+.+..+++++|.....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 31 22334556677778888988877653
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=4.9e-16 Score=116.23 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee-eeE--EEEEEEECCeEEEEEEEeCCCcccccccc-----cccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-IDF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 87 (216)
++|+|+|.+|+|||||+|.|++...........+ ... ....+.... ...+.+||+||........ ...+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 7899999999999999999998654322111111 011 111111111 2368999999975322222 222567
Q ss_pred ccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc----------cChHHHHHHHH----HhC
Q 027949 88 AMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRA----------VPTSKGQALAD----EYG 152 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~~ 152 (216)
+|+++++.+. . +... ..++..+... +.|+++|+||+|+...... ...+..+..+. ..+
T Consensus 81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8988887543 1 2222 2344445443 5799999999997321110 11112222222 212
Q ss_pred ---CeEEEEecC--CCCCHHHHHHHHHHHHHHHh
Q 027949 153 ---IKFFETSAK--TNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 153 ---~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~~ 181 (216)
.++|.+|+. .+.++..+.+.++..+.++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 389999998 57899999999998887643
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=2.7e-16 Score=129.34 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC-------C---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+..++|+++|..++|||||+++|++.. . ..+...+.+.+.. .+.+......+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchH
Confidence 3556999999999999999999997420 0 1122244444443 33443344678999999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRAV--PTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 152 (216)
.|..........+|++++|+|+.+...... ...+..+... +.|.+ +++||+|+.+..... ..+++..++...+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 876555555677899999999987422221 2222223222 56765 679999986422111 1234566666554
Q ss_pred -----CeEEEEecCCCC-CHHHH
Q 027949 153 -----IKFFETSAKTNL-NVEEV 169 (216)
Q Consensus 153 -----~~~~~~Sa~~~~-gi~~l 169 (216)
++++++||.+|. |..++
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred CCccCccEEECccccccccCCch
Confidence 689999999875 43333
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.8e-16 Score=128.43 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=100.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcC-------CC---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++. .+ ..+...+.+.+.....+..++ ..+.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHH
Confidence 355699999999999999999999862 10 011233444443333333333 678999999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKR--AVPTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++++|+|+.+... ......+..+.. .+.|.+ +++||+|+.+... .....++..+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 776656666778999999999987432 122233333332 257765 5799999864211 111234555555543
Q ss_pred -----CeEEEEecCCCC----------CHHHHHHHHHHH
Q 027949 153 -----IKFFETSAKTNL----------NVEEVFFSIARD 176 (216)
Q Consensus 153 -----~~~~~~Sa~~~~----------gi~~l~~~l~~~ 176 (216)
++++++||.+|. ++..|++.|.+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 689999999985 455555555443
No 231
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=9.4e-16 Score=120.05 Aligned_cols=112 Identities=23% Similarity=0.340 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCc----c--------------ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS----F--------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+|+|||||+++|+...-... . ....+.......+.+++ +.+.+|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 489999999999999999975321100 0 01222333444556666 688999999998777
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..+...++.+|++++|+|+++.........| ..+.. .+.|.++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCC
Confidence 7778888999999999999876544322222 22322 2689999999999743
No 232
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.8e-17 Score=113.56 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=116.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
-|++++|..|+|||||++.|.+..... +.||. .+....+.+.+ .+++-+|.+|+..-+..|..++..+|++++.+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccc-cCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 589999999999999999998876543 33432 24445566677 78889999999988889999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--------------CeEEEEec
Q 027949 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--------------IKFFETSA 160 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa 160 (216)
|+-|.+.+.+.+..+..+.... -...|+++.+||+|.+.+..+........+.+..+ +.+|.||.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi 175 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI 175 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence 9999999998888766654432 24799999999999866432222211222221111 36788999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARD 176 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~ 176 (216)
..+.|.-+.|.|+...
T Consensus 176 ~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 176 VRKMGYGEGFKWLSQY 191 (193)
T ss_pred EccCccceeeeehhhh
Confidence 9988888888887654
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.70 E-value=1.8e-16 Score=120.06 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccccE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 90 (216)
||+++|+.+|||||+.+.+..+-.+..... ..+.+.....+...+ ...+.+||.||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999997754432221 233344444554333 26899999999865433 34667899999
Q ss_pred EEEEEeCCCHh---HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-c----cChHHHHHHHHHhC---CeEEEEe
Q 027949 91 ILLVYDVTDES---SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-A----VPTSKGQALADEYG---IKFFETS 159 (216)
Q Consensus 91 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~---~~~~~~S 159 (216)
+|||+|+...+ .+..+...+..+.+..+ +..+.+++.|+|+..+.. . ...+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998433 33444445555555554 788999999999854221 1 11233344444555 7899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCC
Q 027949 160 AKTNLNVEEVFFSIARDIKQRLADTDSRA 188 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~~~~~~~~ 188 (216)
..+ ..+-+.|..+++.+..+....+...
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le~~L 186 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLENLL 186 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 998 5999999999999888776655443
No 234
>CHL00071 tufA elongation factor Tu
Probab=99.70 E-value=5e-16 Score=128.21 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=97.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+..++|+++|.+++|||||+++|++..- ..+..++.+.+.....+..++ ..+.++||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence 45669999999999999999999987411 112224444444333444444 678899999988
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++++|+|+..... ......+..+... +.| +++++||+|+.+... ....+++..+....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 776656666778999999999986432 2222222333222 578 678899999864221 111234555555543
Q ss_pred -----CeEEEEecCCCCCH
Q 027949 153 -----IKFFETSAKTNLNV 166 (216)
Q Consensus 153 -----~~~~~~Sa~~~~gi 166 (216)
++++++||.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 68999999998743
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=7.1e-16 Score=126.11 Aligned_cols=162 Identities=25% Similarity=0.262 Sum_probs=122.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC---------------CCCccccceeeeEEEEEE-EECCeEEEEEEEeCCCccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~ 76 (216)
++.=++.|+-.-.-|||||..+|+... ...+...+.+..-....+ +.++..+.++++||||+-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 566678999999999999999987621 112344555544444443 3356778999999999999
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEE
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFF 156 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
|.......+..++++|+|+|++..--.+.+..++..+.. +..+|.|+||+|++.+..+.-..++.++......+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 999888889999999999999987666677666655543 6789999999999875433333344444444456899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.+||++|.|+++++++|++.+.
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCC
Confidence 9999999999999999988764
No 236
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=9.1e-16 Score=119.35 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=114.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccccc---
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTAYYR--- 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~~~--- 86 (216)
..-.|.++|.|++|||||++.+.+.+.-.-..|.++..+....+.... ...+++-|.||.-+- ..+-..|++
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 344678999999999999999999887655566667777777777633 246889999995432 223444543
Q ss_pred cccEEEEEEeCCCHhH---HHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-Eec
Q 027949 87 GAMGILLVYDVTDESS---FNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSA 160 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa 160 (216)
.+.++++|+|++..+. .+....+..++..+.. .+.|.+||+||+|+..+ .+........+.+..++..+. +||
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeeh
Confidence 5789999999986442 3444444444444332 36899999999996532 222223334444455553222 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 027949 161 KTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~~ 181 (216)
.++.|++++...+.+.+.+..
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999888876
No 237
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=115.87 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=113.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY 85 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~ 85 (216)
+-..+|+++|.|++|||||+++|++........++++.+.....+.+++ .++++.|+||.-+-. .......
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3447899999999999999999999887766667777889999999999 889999999843211 2355677
Q ss_pred ccccEEEEEEeCCCHhH-HHHHHHHHHHH-----------------------------------------HHhc------
Q 027949 86 RGAMGILLVYDVTDESS-FNNIRNWIRNI-----------------------------------------EQHA------ 117 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~-~~~~~~~~~~~-----------------------------------------~~~~------ 117 (216)
++||++|+|+|+..+.. .+.+...+... .++.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986554 33332222110 1100
Q ss_pred ------------------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 118 ------------------SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 118 ------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
--..|.++|.||.|+.. .+....+.+.. .++.+||..+.|++++.+.|-+.+-
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 01479999999999754 23333333333 7899999999999999888877653
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.67 E-value=7.1e-16 Score=128.15 Aligned_cols=150 Identities=21% Similarity=0.144 Sum_probs=101.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+.+|+...- ..+...+.+.+.....+..++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3459999999999999999998864110 112223344444444444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH-------HHHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRNWIRNIEQHASDNV-NKILVGNKADMD 133 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~ 133 (216)
+.++++|+||+..|-......+..+|++|+|+|+.+.. + ......+..+... +. +++|++||+|+.
T Consensus 85 --~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 --YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred --EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 78899999999999888888889999999999998631 1 1222222222222 56 468889999975
Q ss_pred CCC-----CccChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949 134 ESK-----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEE 168 (216)
Q Consensus 134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 168 (216)
+.. .....+++..++...+ ++|+++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1122455666666665 6799999999999864
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=8.2e-16 Score=119.96 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=81.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+|+|||||+++|+...- ..+...+.+.+.....+.+.+ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 489999999999999999974211 112233455555666677776 788999999998887
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..+...++.+|++|+|+|+.+...-. ....+..+.. .+.|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 77888899999999999997753222 2233333332 2689999999999864
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.67 E-value=8e-16 Score=128.81 Aligned_cols=153 Identities=21% Similarity=0.154 Sum_probs=96.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC--C-------------------------------ccccceeeeEEEEEEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT--T-------------------------------SFITTIGIDFKIRTIEL 59 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~ 59 (216)
...++|+|+|..++|||||+++|+...-. . +...+.+.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45599999999999999999999754211 0 01122334444444444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
++ ..+.|+||||+..|.......+..+|++++|+|+.....-.....+ ..+... . ..|++|++||+|+.+.....
T Consensus 105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhHH
Confidence 44 6789999999887765444556889999999999764321111111 111111 1 24788999999986422211
Q ss_pred Ch---HHHHHHHHHh----CCeEEEEecCCCCCHHHHH
Q 027949 140 PT---SKGQALADEY----GIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 140 ~~---~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~ 170 (216)
.. +++..+.... .++++++||++|+|++++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 11 2223333333 3689999999999998753
No 241
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=1.4e-15 Score=104.14 Aligned_cols=106 Identities=24% Similarity=0.259 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYR 86 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 86 (216)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++ ..+.++||||...-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 233334455555556667777 455799999953211 11233347
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (216)
.+|+++||+|++++.. .....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 23333444442 47899999998
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=1e-15 Score=115.93 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--C--------------ccccceeeeEEEEEEEEC--------CeEEEEEEEeCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (216)
+|+|+|..++|||||+.+|+...-. . +...+.+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999764311 0 111112222222233333 346889999999
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
|+..|.......++.+|++++|+|+.+....... ..+..... .+.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence 9999988888899999999999999886544432 22222222 267999999999975
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.66 E-value=8.7e-16 Score=126.63 Aligned_cols=149 Identities=23% Similarity=0.187 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC---------------------------------CccccceeeeEEEEEEEECCe
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELDGK 62 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (216)
++|+|+|..++|||||+.+|+...-. .+...+.+.+.....+.+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 58999999999999999999643210 01112233445555555555
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP-- 140 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 140 (216)
..+.|+||||++.|.......+..+|++|+|+|+.....-.....+ ..+.... ..++++++||+|+.+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 6788999999988765555667899999999999765322111111 1122211 346888999999864222111
Q ss_pred -hHHHHHHHHHhC---CeEEEEecCCCCCHHHH
Q 027949 141 -TSKGQALADEYG---IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 141 -~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l 169 (216)
.++...+....+ ++++++||++|+|+++.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333334444 47999999999999863
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.66 E-value=1.6e-15 Score=126.18 Aligned_cols=151 Identities=21% Similarity=0.135 Sum_probs=98.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+.+|+... . ..+...+.+.+.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 455999999999999999999987511 0 112233444555445555555
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (216)
..+.|+|+||+..|.......+..+|++++|+|+..... + ....+-+..+... +.| ++|++||+|...
T Consensus 85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 788999999999887777777889999999999986521 0 1222222222222 555 578999999532
Q ss_pred C-----CCccChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949 135 S-----KRAVPTSKGQALADEYG-----IKFFETSAKTNLNVEE 168 (216)
Q Consensus 135 ~-----~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 168 (216)
. ......+++..+....+ ++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 11122233444444333 6799999999999864
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=4.7e-15 Score=121.92 Aligned_cols=148 Identities=19% Similarity=0.138 Sum_probs=95.4
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+....++|+++|..++|||||+++|+.... ..+...+.+.+.....+..++ ..+.++||||+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~ 85 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGH 85 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCH
Confidence 345679999999999999999999986311 111234444444333333333 67889999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCc--cChHHHHHHHHHh
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRA--VPTSKGQALADEY 151 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 151 (216)
..|.......+..+|++++|+|+..... ......+..+... +.|.+ +++||+|+.+.... ....++..+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 8776666666789999999999986532 2222233333322 57876 57999998642111 1122344444443
Q ss_pred -----CCeEEEEecCCCC
Q 027949 152 -----GIKFFETSAKTNL 164 (216)
Q Consensus 152 -----~~~~~~~Sa~~~~ 164 (216)
.++++++||.+|.
T Consensus 162 ~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 162 DFPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCCccCCcEEEeeccccc
Confidence 3689999999875
No 246
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.66 E-value=3.3e-15 Score=116.45 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=77.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCc----------------------cccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS----------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+|+|+|.+|+|||||+++|+...-... ...+.+.......+.+.+ +.+.+|||||+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG~ 81 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPGH 81 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCCc
Confidence 689999999999999999975311000 011222233344555555 78999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..|.......++.+|++|+|+|+++... .....++..... .+.|+++++||+|+.+
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887766777889999999999987532 222233333322 3689999999999754
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.2e-15 Score=133.65 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC--------CC----------ccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF--------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+...+|+|+|..|+|||||+++|+...- .. +.....+.......+.+.+ +.+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 3567999999999999999999975321 00 0012223333444566665 78999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..+...+..+++.+|++|+|+|+.+.........| ..+.. .+.|+++|+||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 88888888899999999999999887655443333 23322 2689999999999854
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.7e-15 Score=120.44 Aligned_cols=157 Identities=22% Similarity=0.214 Sum_probs=116.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.=|.++|.-..|||||+..+.+.++...-.-+.+.+..-..+..+- ....+.|+||||++.|..+...-..-+|++|+|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 5689999999999999999999988776666666666666666641 224788999999999999888888889999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---------CeEEEEecCCCCC
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETSAKTNLN 165 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~g 165 (216)
+++++.---+.. ..+......+.|++|.+||+|.++. .+.....-..++| ..++++||++|+|
T Consensus 86 Va~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~~----np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 86 VAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPEA----NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCCC----CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999985322222 2233333448999999999998643 2233322222223 5899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~i~~~ 180 (216)
+++|+..|+-...-.
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999876554443
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.66 E-value=5e-15 Score=117.68 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=58.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------DG-KRIKLQIWDTAGQ- 74 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 74 (216)
|+++|.+++|||||+++|++........|..+.+.......+ ++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765444444444444443332 22 3368999999997
Q ss_pred ---cccccccccc---cccccEEEEEEeCC
Q 027949 75 ---ERFRTITTAY---YRGAMGILLVYDVT 98 (216)
Q Consensus 75 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 98 (216)
+++..+...| ++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444444444 88999999999997
No 250
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=4e-15 Score=124.30 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=98.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC------C----------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|+... . ..+...+.+.+.....+..++ ..+.++|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence 4567999999999999999999998521 0 122334444444444444454 678899999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHh-
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEY- 151 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~- 151 (216)
.|-......+..+|++++|+|+.+.... ....++..+... +.| +++++||+|+.+.+. ....+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 8876666667789999999998865332 223333333322 577 678899999864221 11123455555543
Q ss_pred ----CCeEEEEecCCCCC
Q 027949 152 ----GIKFFETSAKTNLN 165 (216)
Q Consensus 152 ----~~~~~~~Sa~~~~g 165 (216)
.++++++|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 36899999998853
No 251
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=4e-15 Score=125.76 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=79.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC--CC--C------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FT--T------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
...-+|+|+|..++|||||+++|+... .. . +...+.+.......+.+++ +.+++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 345689999999999999999997411 10 0 0011122233334455555 7899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|||+..|.......++.+|++|+|+|+.+.... ....++..... .+.|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999988887777788999999999999875322 23333333322 3789999999999743
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=4e-15 Score=120.03 Aligned_cols=160 Identities=25% Similarity=0.288 Sum_probs=121.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC---------------CCCccccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
++.=+..++-.-.-|||||..+|+... ..-+...+.+.......+.+ +|..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 344466888899999999999987621 22345566666666665555 557899999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI- 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (216)
-.|.-.....+..|.++++|+|++..-..+.+.+.+..+.. +.-++.|+||+||+.+..+.- ..++-.-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adperv---k~eIe~~iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERV---KQEIEDIIGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHH---HHHHHHHhCCC
Confidence 88877777778889999999999998877888887777754 577899999999976533222 2333334453
Q ss_pred --eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 154 --KFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 154 --~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
..+.+||++|.||+++++.|++.+..
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999887643
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=2.2e-14 Score=107.25 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=99.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCcc--ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 82 (216)
++|+++|.+|+|||||+|.|++....... .+..+.........+++ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654222 23344455555556666 5789999999643321 112
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc-----cChHHHHHHHHHhCCeE
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDESKRA-----VPTSKGQALADEYGIKF 155 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~ 155 (216)
......|++|+|+++.+. +- .....+..+....+. -.++++|+|+.|....... .....++.+....+-.+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 234678999999998762 21 112233333333221 2578899999995332110 11244556666666566
Q ss_pred EEEec-----CCCCCHHHHHHHHHHHHHH
Q 027949 156 FETSA-----KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 156 ~~~Sa-----~~~~gi~~l~~~l~~~i~~ 179 (216)
+..+. ..+.++++|++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55554 4567788888888777765
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2e-14 Score=117.80 Aligned_cols=180 Identities=18% Similarity=0.159 Sum_probs=125.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...-|.|+|.-.-|||||+..|.+..+......+.+...-...+..... ..++|.||||+..|..+...-..-.|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 3356889999999999999999998887666666665555555555422 678899999999999999888888999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-------HHhC--CeEEEEecCCCC
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-------DEYG--IKFFETSAKTNL 164 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~ 164 (216)
|+.+.|.-.-+.+ ..+......+.|++|.+||+|.+++ +++....-. ..+| ++++++||++|+
T Consensus 231 VVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 231 VVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999885322222 2233333448999999999997643 233322222 2344 689999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcccCCCCCccccccCCCCcc
Q 027949 165 NVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAG 202 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (216)
|++.|-+.++-...-+--+-++...-++..|++...++
T Consensus 303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg 340 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKG 340 (683)
T ss_pred ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCC
Confidence 99999888665444333333344444566666554433
No 255
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4e-15 Score=120.53 Aligned_cols=166 Identities=21% Similarity=0.212 Sum_probs=113.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccc--------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTI--------TTAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~~ 84 (216)
-++|+++|.||+|||||+|.|.+.+.. ....++++.+-....++++| +.+.+.||+|..+ .... ....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 389999999999999999999998765 56667888888888888888 8889999999655 1111 2234
Q ss_pred cccccEEEEEEeC--CCHhHHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---C
Q 027949 85 YRGAMGILLVYDV--TDESSFNNIRNWIRNIEQHA------SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---I 153 (216)
Q Consensus 85 ~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 153 (216)
+..+|++++|+|+ ++.++...+...+.....-. ....|++++.||.|+.......... ...+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCccc
Confidence 5679999999999 33333333333333332211 1247899999999986532211111 111111111 2
Q ss_pred e-EEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 154 K-FFETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 154 ~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
+ ..++|+++++|++.|...|.+.+...-..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 3 45599999999999999999888876543
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=113.21 Aligned_cols=162 Identities=20% Similarity=0.298 Sum_probs=107.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE-EEECCeEEEEEEEeCCCccc-------ccccccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTAYY 85 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 85 (216)
..++|+++|..|+||||++|+|+..+......-..+.+..... ..+++ -.+.|||+||... |+.....++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4499999999999999999999976654333223333332222 23344 5789999999544 677788888
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH--------h
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK------RAVPTSKGQALADE--------Y 151 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~--------~ 151 (216)
...|.++++.++.++.--....-| ..+.... .+.++++++|.+|..... .......++.+..+ .
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFL-RDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHH-HHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999887533332223 3332222 248999999999963221 11111222222211 1
Q ss_pred C--CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 152 G--IKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 152 ~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
. -+++.++.+.+.|++.+...+++.+..
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1 388888999999999999999998874
No 257
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.6e-14 Score=120.04 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=97.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcC------CC----------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|.+. .. ..+..++.+.+.....+..++ ..+.++||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence 345699999999999999999999732 10 122234555554444444444 678999999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCcc--ChHHHHHHHHHh-
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRAV--PTSKGQALADEY- 151 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~- 151 (216)
.|-.........+|++++|+|+.+.... .....+..+... +.|. ++++||+|+.+..... ...++..+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 7655555555679999999999764321 222222223222 6784 6789999986421110 112233333332
Q ss_pred ----CCeEEEEecC---CCCC-------HHHHHHHHHHH
Q 027949 152 ----GIKFFETSAK---TNLN-------VEEVFFSIARD 176 (216)
Q Consensus 152 ----~~~~~~~Sa~---~~~g-------i~~l~~~l~~~ 176 (216)
.++++++|+. +|.| +..|+++|.+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 2678888876 4444 55555555544
No 258
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=129.25 Aligned_cols=151 Identities=22% Similarity=0.172 Sum_probs=94.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc---------------------------------cccceeeeEEEEEEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIEL 59 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 59 (216)
...++|+++|.+++|||||+++|+...-... ...+.+.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3458999999999999999999986431100 0112233333344444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
++ ..+.|+||||++.|.......+..+|++++|+|+.....-.. ...+..+.... ..+++|++||+|+.+.....
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHH
Confidence 44 578899999998775545556788999999999976432111 11111122221 25788899999986421111
Q ss_pred C---hHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q 027949 140 P---TSKGQALADEYG---IKFFETSAKTNLNVEE 168 (216)
Q Consensus 140 ~---~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 168 (216)
. ..++..+....+ ++++++||++|.|+++
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 122333444444 4699999999999885
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=6.6e-15 Score=122.23 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=102.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEE---------------EEC-C------------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTI---------------ELD-G------------ 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~-~------------ 61 (216)
...++|.++|.-..|||||+.+|++.... .+...+.+.+.-.... ... +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45699999999999999999999975432 1221222211111100 000 0
Q ss_pred ---eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 62 ---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 62 ---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
....+.++|+||++.|-......+..+|++++|+|+.++.........+..+.... -.++++|+||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence 01368899999998886666666778999999999986411112222222222221 2468899999998642211
Q ss_pred -cChHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 139 -VPTSKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
...+++..+... ...+++++||++|.|++.|++.|.+.+.
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 112233333322 2479999999999999999998886543
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=1.9e-14 Score=121.65 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=78.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC-CCC---------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS-FTT---------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
...-+|+|+|.+++|||||+++|+... ... +...+.+.......+.+++ +.+.+||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inliD 86 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNLLD 86 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEEEE
Confidence 455799999999999999999986311 110 0011122223334445555 8899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
|||+..|.......++.+|++|+|+|+.+.-. .....++..... .+.|+++++||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 99998877766777889999999999987421 222333333322 368999999999984
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=1.9e-14 Score=125.99 Aligned_cols=117 Identities=19% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC--------C----------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF--------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|..++|||||+++|+...- . .+...+.+.+.....+.+++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 44568899999999999999999975210 0 11234556666677777877 7889999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
+..+...+...++.+|++|+|+|+.+....... ..+..+.. .+.|+++++||+|+.+
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 987777788888999999999999876432222 22223322 2689999999999864
No 262
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.60 E-value=1.9e-15 Score=109.87 Aligned_cols=116 Identities=23% Similarity=0.440 Sum_probs=71.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccccEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI 91 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~ 91 (216)
-.|+++|+.|+|||+|+.+|..+.......+. +... .+.+ ......+.++|+||+.+.+..... +...+-++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998654433332 1211 2222 122246789999999987764444 37789999
Q ss_pred EEEEeCCC-HhHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 027949 92 LLVYDVTD-ESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDES 135 (216)
Q Consensus 92 i~v~d~~~-~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~ 135 (216)
|||+|++. +..+..+.+++..+... .....|++|+.||.|+..+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 44555555544443322 2357999999999998653
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=2.5e-14 Score=125.28 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=85.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+..-+|+|+|.+++|||||+++|+...-. .+...+.+.+.....+.+++ ..+.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 445679999999999999999999742110 01123455556666777777 7889999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
+..+...+...++.+|++++|+|+.+....... .++..+.. .+.|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 988777778888999999999999876443332 22233332 2689999999999865
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.58 E-value=1.2e-13 Score=110.42 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=89.8
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCCCcE
Q 027949 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNK 123 (216)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ 123 (216)
..+.+++ +.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... -.+.|+
T Consensus 154 ~~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi 231 (317)
T cd00066 154 TKFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI 231 (317)
T ss_pred EEEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence 3444454 7899999999999999999999999999999999874 34455445554444332 147999
Q ss_pred EEEEeCCCCCCC--------------CC-ccChHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 124 ILVGNKADMDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 124 ivv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+|++||.|+... .. ..+.+.+..+... ..+-...++|.+..++..+|+.+.+.++
T Consensus 232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 999999996221 11 2234444444322 1255678899999999999999999988
Q ss_pred HHh
Q 027949 179 QRL 181 (216)
Q Consensus 179 ~~~ 181 (216)
...
T Consensus 312 ~~~ 314 (317)
T cd00066 312 QNN 314 (317)
T ss_pred HHH
Confidence 764
No 265
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.57 E-value=5.9e-14 Score=108.55 Aligned_cols=161 Identities=15% Similarity=0.293 Sum_probs=118.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe--EEEEEEEeCCCcccccccccccccc----cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRG----AM 89 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~----~d 89 (216)
-+|+|+|..++||||||.+|.+.+ ...++.+.++.+..+.-+.+ ...+.+|-..|+.-+..+....+.. -.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 578999999999999999999876 45566777777776655332 3678899888876555544433332 24
Q ss_pred EEEEEEeCCCHhH-HHHHHHHHHHHHHhc---------------------------------------------------
Q 027949 90 GILLVYDVTDESS-FNNIRNWIRNIEQHA--------------------------------------------------- 117 (216)
Q Consensus 90 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~--------------------------------------------------- 117 (216)
++|++.|.++|-. ++.+..|...+.+..
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 6888999999844 445555654433210
Q ss_pred ----------CCCCcEEEEEeCCCCCC----------CCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 118 ----------SDNVNKILVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 118 ----------~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
..++|++||.+|+|... +........++.||..+|..++.+|++...+++-+..+|++.+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 01699999999999721 2233455678899999999999999999999999999999887
Q ss_pred HH
Q 027949 178 KQ 179 (216)
Q Consensus 178 ~~ 179 (216)
+-
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 64
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=1.3e-13 Score=112.83 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 73 (216)
++|+++|.||+|||||+|+|++..+.....+..+.+.....+.. + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998765444455555555544331 1 1236789999999
Q ss_pred cc----ccccccccc---cccccEEEEEEeCC
Q 027949 74 QE----RFRTITTAY---YRGAMGILLVYDVT 98 (216)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (216)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 333344455 78999999999997
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=1.1e-13 Score=121.14 Aligned_cols=117 Identities=18% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC--CC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|.+++|||||+++|+... .. .+...+.+.+.....+.+.+ ..++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 4556799999999999999999997411 10 01234455666666777776 6889999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
+..+.......++.+|++++|+|+...-...... .+..+... +.|.++++||+|+.+
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCCC
Confidence 8777666666778899999999987654333322 22233332 689999999999853
No 268
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.55 E-value=2.4e-13 Score=109.50 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=89.9
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHh-cCCCC
Q 027949 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNV 121 (216)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~ 121 (216)
....+.+++ +.+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....+..+... .-.+.
T Consensus 175 ~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~ 252 (342)
T smart00275 175 QETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT 252 (342)
T ss_pred EEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence 333455555 6789999999999999999999999999999999974 3455555555555432 22478
Q ss_pred cEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----------hCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 122 NKILVGNKADMDES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 122 p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
|++|++||.|+... ....+.+.+..+... ..+-.+.++|.+..++..+|+.+.+.
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 99999999997221 111233333333321 12456788899999999999999998
Q ss_pred HHHHh
Q 027949 177 IKQRL 181 (216)
Q Consensus 177 i~~~~ 181 (216)
+++..
T Consensus 333 I~~~~ 337 (342)
T smart00275 333 ILQRN 337 (342)
T ss_pred HHHHH
Confidence 88765
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.4e-14 Score=111.75 Aligned_cols=154 Identities=20% Similarity=0.148 Sum_probs=100.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++++|+|...+|||||+-+|+.. ....+...+.+++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 44599999999999999999998651 11123344555555555554444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHH-----HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-----RNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
+.++|+|+||+..|-...-.-..++|+.|+|+|+.+.+.-..+ ......+..... -..++|++||+|+.+-.
T Consensus 85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence 7899999999887777777777899999999999887421111 111112222221 34567779999986511
Q ss_pred Cc---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949 137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 169 (216)
.. ....++..+.+..| ++|+++|+..|+|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 11 11223334444444 57999999999987653
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=1.9e-13 Score=115.20 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=71.2
Q ss_pred EEEEEEeCCCcccc-----ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 64 IKLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 64 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
..+.|+||||.... .......+..+|+++||+|+.+..+..+ ......+... ....|+++|+||+|+.+. ..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dr-ee 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDR-NS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCc-cc
Confidence 46788999997542 1123446889999999999987433222 1223333332 223599999999998532 22
Q ss_pred cChHHHHHHHHHh----C---CeEEEEecCCCCCHHHHHHHHHH
Q 027949 139 VPTSKGQALADEY----G---IKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 139 ~~~~~~~~~~~~~----~---~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
...+.+..+.... . ..+|++||+.|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2344444443211 2 37999999999999999998876
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=2.2e-14 Score=95.78 Aligned_cols=136 Identities=26% Similarity=0.264 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL 92 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (216)
|++++|..|+|||||.+.+.+.... +..+.. ++++.. -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999987643 222222 223221 135999943 22222333446799999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~ 171 (216)
+|-+++++++.-. ..+... ...|+|=|++|+||.+ ....+..+.+..+.|. ++|++|+.++.|+++++.
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999999864211 111121 2467888999999964 3456677788888886 899999999999999999
Q ss_pred HHHH
Q 027949 172 SIAR 175 (216)
Q Consensus 172 ~l~~ 175 (216)
+|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8864
No 272
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.7e-14 Score=101.79 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cccEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 92 (216)
-.|+++|+.+||||+|+-+|..+....... .++.....+...+ ..++++|.||+.+.+.....+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 468999999999999999999885544332 2445555555555 34788999999987776666665 688999
Q ss_pred EEEeCCC-HhHHHHHHHH-HHHHHHh--cCCCCcEEEEEeCCCCCCCCCccC-----hHHH-------------------
Q 027949 93 LVYDVTD-ESSFNNIRNW-IRNIEQH--ASDNVNKILVGNKADMDESKRAVP-----TSKG------------------- 144 (216)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~-~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~------------------- 144 (216)
||+|... .....++..+ +..+... .....|++++.||.|+.-+..+.- ..++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999753 3334444443 3434333 346789999999999854321100 0000
Q ss_pred ---------HH--HHH--HhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 145 ---------QA--LAD--EYGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 145 ---------~~--~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
.+ |.. ...+.+.++|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 111 12256889999988 999999999765
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=9.9e-14 Score=121.43 Aligned_cols=108 Identities=25% Similarity=0.245 Sum_probs=77.2
Q ss_pred EcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 027949 21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (216)
Q Consensus 21 ~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (216)
+|..++|||||+++|+...-. .+...+.+.......+.+++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 599999999999999543210 01123344455556667766 7899999999987777777
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..++.+|++++|+|++..........| ..+.. .+.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 888899999999999886554433222 22322 3689999999999853
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.52 E-value=5.5e-14 Score=106.38 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-------cceeeeEEEEEE-------------------------
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-------TTIGIDFKIRTI------------------------- 57 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~------------------------- 57 (216)
......+-|+|+|+.|+|||||+++|...-...... |....-.+...+
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 345566899999999999999999997632221111 000000000000
Q ss_pred ----------------EECCeEEEEEEEeCCCcccc------ccccccccc--cccEEEEEEeCCC---HhHHHHHHHHH
Q 027949 58 ----------------ELDGKRIKLQIWDTAGQERF------RTITTAYYR--GAMGILLVYDVTD---ESSFNNIRNWI 110 (216)
Q Consensus 58 ----------------~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~---~~~~~~~~~~~ 110 (216)
......+...++||||+-+. ..+....+. .-.+++||+|..+ |.+|..-.-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 00122356889999997431 111111111 2346888888654 44454433333
Q ss_pred HHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHH---HH--------------------H-hCCeEEEEecCCCCC
Q 027949 111 RNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQAL---AD--------------------E-YGIKFFETSAKTNLN 165 (216)
Q Consensus 111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~---~~--------------------~-~~~~~~~~Sa~~~~g 165 (216)
..+.- ....|++++.||+|+.+.... ....+...| .+ . .++..+.+|+.+|+|
T Consensus 174 cSily--ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 174 CSILY--KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHH--hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 33333 337999999999998653211 011111111 11 1 136789999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 027949 166 VEEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~~~~~ 185 (216)
++++|..+-+.+.++...-.
T Consensus 252 ~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 252 FDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999988877655433
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=6.5e-14 Score=113.75 Aligned_cols=168 Identities=19% Similarity=0.151 Sum_probs=118.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----cc-----cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT-----TAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~-----~~~~ 85 (216)
.-.++|+|.|++|||||++.+........+.++++.......+.+.. ..+++.||||.-.... .. ....
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 35789999999999999999999988877777777667777766665 6678889999532111 11 1111
Q ss_pred ccccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHH-HHHHHHHhCCeEEEEecC
Q 027949 86 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSK-GQALADEYGIKFFETSAK 161 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-~~~~~~~~~~~~~~~Sa~ 161 (216)
+--.+++|+.|++... +...-..++..+...+. +.|+|+|+||+|+...+... ..++ +..+...-+++++.+|+.
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 2234689999998754 44555567777777665 78999999999975433221 1222 333333444899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccc
Q 027949 162 TNLNVEEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~~~~~~ 185 (216)
+.+|+-++.....+.++..+-+..
T Consensus 325 ~eegVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 325 QEEGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred chhceeeHHHHHHHHHHHHHHHHH
Confidence 999999998888877777665543
No 276
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.50 E-value=7.9e-13 Score=109.75 Aligned_cols=162 Identities=16% Similarity=0.307 Sum_probs=115.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC--eEEEEEEEeCCCcccccccccccccc----cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM 89 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~----~d 89 (216)
-.|+|+|..++|||||+.+|.+.+ ...++.+.+|.+..+.-++ ....+.+|...|...+..+....+.. --
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 578999999999999999998654 3446677778777765532 23578999998876666655444432 24
Q ss_pred EEEEEEeCCCHhHHH-HHHHHHHHHHHh-------------------------------c--------------------
Q 027949 90 GILLVYDVTDESSFN-NIRNWIRNIEQH-------------------------------A-------------------- 117 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~-~~~~~~~~~~~~-------------------------------~-------------------- 117 (216)
++|+|+|.+.|..+. .+..|+..+... .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 688999999986543 444444332210 0
Q ss_pred -----------CCCCcEEEEEeCCCCCC----C------CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 118 -----------SDNVNKILVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 118 -----------~~~~p~ivv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
..++|++||++|+|... + ........++.||..+|+.+|.||++...+++-|+.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 01589999999999621 1 11234456888899999999999999999999999998887
Q ss_pred HHHH
Q 027949 177 IKQR 180 (216)
Q Consensus 177 i~~~ 180 (216)
++..
T Consensus 263 l~~~ 266 (472)
T PF05783_consen 263 LYGF 266 (472)
T ss_pred hccC
Confidence 7654
No 277
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=7.2e-13 Score=106.98 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
=+|+++-.-.-|||||+..|+.+.-. .+...+.++--...-+.|++ +.++|+||||+..|..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADFGG 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADFGG 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCccc
Confidence 47899999999999999999875421 11122222222222355666 7899999999999999
Q ss_pred ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C
Q 027949 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-------G 152 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~ 152 (216)
.....+.-.|++++++|+.+..- .+.+-.++... ..+.+.|||+||+|-+++....-.++..++...+ +
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl---~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKAL---ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHH---HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999987432 22222222222 2367889999999988766555556666665444 4
Q ss_pred CeEEEEecCCC----------CCHHHHHHHHHHHHHH
Q 027949 153 IKFFETSAKTN----------LNVEEVFFSIARDIKQ 179 (216)
Q Consensus 153 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 179 (216)
.+++..|++.| .++.-||+.|++++..
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 79999999877 3577778777777654
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.48 E-value=1.1e-12 Score=117.38 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=102.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE----------------EEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~ 75 (216)
.++..+-++++ ||||+.+|.+.++...-..+.+.+.-...+..+... -.+.||||||++
T Consensus 463 ~~~~~~~~~~~-----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 463 HNFIANGILVH-----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred Ccceeeeeecc-----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 34444444444 999999999988876666666655555555443211 127999999999
Q ss_pred ccccccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-c-----------C
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-V-----------P 140 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~-----------~ 140 (216)
.|..+....+..+|++++|+|+++ +.++..+. .+.. .+.|+++|+||+|+.+.... . .
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~ 610 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD 610 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhH
Confidence 988877777888999999999987 44444332 2222 26899999999998532110 0 0
Q ss_pred hHHHHHH----------HHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 141 TSKGQAL----------ADEY---------------GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 141 ~~~~~~~----------~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.....++ .... .++++++||++|+|+++|+.+|.....
T Consensus 611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0000111 0111 268999999999999999988765443
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=1.8e-12 Score=99.89 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---I------ 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~------ 80 (216)
.....++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 445669999999999999999999999765322 222233334444445566 6789999999654321 0
Q ss_pred -cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027949 81 -TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMD 133 (216)
Q Consensus 81 -~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~ 133 (216)
...++. ..|+++||..++....-..-...++.+....+. -.++++|.||+|..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112222 468888887665432111112333334333221 25689999999964
No 280
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=2.2e-12 Score=96.35 Aligned_cols=103 Identities=18% Similarity=0.107 Sum_probs=64.0
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (216)
....++++.|......... .-+|.+|.|+|+.+.+.... .+...+ ...-++++||+|+.+. .....+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~-~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPM-VGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhcccc-ccccHHH
Confidence 4566778888432222221 12678999999987665321 111111 1122889999998642 1123333
Q ss_pred HHHHHHH--hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 144 GQALADE--YGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 144 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
..+..+. .+.+++++||++|+|++++|+||.+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444443 2479999999999999999999987653
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=3.4e-12 Score=100.05 Aligned_cols=120 Identities=19% Similarity=0.152 Sum_probs=70.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTA 83 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~ 83 (216)
....++|+|+|.+|+||||++|+|++...... .....+..........++ ..+.++||||....... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 34669999999999999999999998875321 122222222223334455 68899999996543211 111
Q ss_pred cc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCC
Q 027949 84 YY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMD 133 (216)
Q Consensus 84 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~ 133 (216)
++ ...|+++||..++.......-...+..+...++ --.+.+|++|+.|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 11 258999999665432111111222333333221 125689999999965
No 282
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.4e-12 Score=101.03 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=69.1
Q ss_pred EEEEEeCCCcccc---cccccccccc-----ccEEEEEEeCCCHhHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 65 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIR--NWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 65 ~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
.+.+||+||+.+. ...+..+++. .+++++|+|+.......... .|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6889999997653 3333333322 78999999996543322221 122211111 23789999999999854
Q ss_pred CCCc-cChHHHH------------------------HHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 135 SKRA-VPTSKGQ------------------------ALADEYG--IKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 135 ~~~~-~~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.... ....... +.....+ .+++++|+++++|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3211 0001011 1122334 58899999999999999999988763
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=3.3e-12 Score=96.59 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=94.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCcc--ccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT 82 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 82 (216)
++|+|+|.+|+||||++|.|++....... ....+..+......+++ ..+.++||||....... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999998765332 23344456666667888 67889999994322111 11
Q ss_pred cccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---c---ChHHHHHHHHHhCCeE
Q 027949 83 AYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA---V---PTSKGQALADEYGIKF 155 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~---~~~~~~~~~~~~~~~~ 155 (216)
......|++|||+.+.+.. ....+..++..+....- -..++||.+..|....... + ....++.+....+-.|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 2345689999999988432 11222223333322111 2457888888885332220 0 1123556666777778
Q ss_pred EEEecC------CCCCHHHHHHHHHHHHHHHh
Q 027949 156 FETSAK------TNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 156 ~~~Sa~------~~~gi~~l~~~l~~~i~~~~ 181 (216)
...+.+ +...+.+|+..|-+.+.+..
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 777766 23457777777766666553
No 284
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.43 E-value=8.1e-12 Score=103.38 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=122.8
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+.+.|+|+.++|||.|++.+++..+...+..+....+....+...+....+.+.|.+-. ....+...- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 4456799999999999999999999998887766666666677777777777788888888754 222222222 67999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEV 169 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 169 (216)
++++||.+++.++..+...+..-... ...|+++|+.|+|+.+..+...... .+++.++++ +.+..|....-. .++
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence 99999999999999987766544433 4799999999999976555555555 889999996 556666664223 889
Q ss_pred HHHHHHHHHH
Q 027949 170 FFSIARDIKQ 179 (216)
Q Consensus 170 ~~~l~~~i~~ 179 (216)
|..|..+...
T Consensus 575 f~kL~~~A~~ 584 (625)
T KOG1707|consen 575 FIKLATMAQY 584 (625)
T ss_pred HHHHHHhhhC
Confidence 9988876643
No 285
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.42 E-value=1.1e-12 Score=115.23 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=79.1
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcC---------------CCCC-ccccceeeeE--EEEEEEECCeEEEEEEEeCC
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTT-SFITTIGIDF--KIRTIELDGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~---------------~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~ 72 (216)
..+..-+|+|+|..++|||||+++|+.. ++.. +.....+... ....+.+++..+.+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3455679999999999999999999752 1111 0111112111 11122344555899999999
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|+..|.......++.+|++|+|+|+.+.-.......| ..+.. .+.|+++++||+|...
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhccc
Confidence 9988877778888999999999999774322222122 22222 2578899999999754
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.42 E-value=3e-12 Score=100.24 Aligned_cols=151 Identities=23% Similarity=0.226 Sum_probs=102.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC---------------------------------CCCccccceeeeEEEEEEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------------------------FTTSFITTIGIDFKIRTIEL 59 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (216)
...++++-+|.-.-||||||-+|+... +..+...+.+++..++.|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345999999999999999999997621 01233344555555555544
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
+. .+|.+-||||++.|-.....-..-+|++|+++|+-..- +++.+ ....+..... -..+++.+||+||.+..++.
T Consensus 84 ~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTr-RHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTR-RHSFIASLLG-IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhH-HHHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence 44 68899999999998877666677899999999994321 12221 1122222221 25667779999998654432
Q ss_pred ---ChHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q 027949 140 ---PTSKGQALADEYG---IKFFETSAKTNLNVEE 168 (216)
Q Consensus 140 ---~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 168 (216)
...+...|+..++ ..++++||..|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3345666777777 4899999999988643
No 287
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=5.9e-12 Score=102.22 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=64.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF 77 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~ 77 (216)
...++|+++|.||+|||||+|+|++........|.++.+.....+.+.+.. .++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 345899999999999999999999988766666777777777777665322 35899999995421
Q ss_pred c----cc---cccccccccEEEEEEeCC
Q 027949 78 R----TI---TTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 78 ~----~~---~~~~~~~~d~~i~v~d~~ 98 (216)
. .+ ....++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 11 223457899999999974
No 288
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=6.9e-12 Score=94.54 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------ccceee------eEEEEEEEE-C------------------
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIGI------DFKIRTIEL-D------------------ 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~------~~~~~~~~~-~------------------ 60 (216)
......|.|+|..|+|||||+++++........ ...... ......+.. +
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 345688999999999999999998754110000 000000 000000000 0
Q ss_pred -CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
.....+.++|+.|.-.. ...+....+..+.|+|+.+.+... .... .+ ...|.++++||+|+.+.. ..
T Consensus 99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~-~~ 166 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAV-GF 166 (207)
T ss_pred ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccc-hh
Confidence 01235667777772110 111112345556778876553211 1111 11 146779999999986421 12
Q ss_pred ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 140 PTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 140 ~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
.........+... ++++++||++|.|++++++|+.+..
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2333444444443 7999999999999999999998753
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.39 E-value=1.6e-11 Score=97.96 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=67.4
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTS 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~ 142 (216)
+.+.|+||+|....... ....+|.++++.+...++.+..... .+.+. .-++|+||+|+.+... .....
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHHH
Confidence 68899999997533322 4567999999977544544444332 12222 2389999999854221 11112
Q ss_pred HHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 143 KGQALADE-------YGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 143 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
++...... ...+++.+||.++.|+++++++|.+++...
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 22222222 114899999999999999999999987643
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=1.9e-11 Score=98.27 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (216)
++|+++|.||+|||||+|+|++........|.++.+.....+.+.+.. ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999988655555777777777777665532 258999999954211
Q ss_pred --cc---cccccccccEEEEEEeCC
Q 027949 79 --TI---TTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 79 --~~---~~~~~~~~d~~i~v~d~~ 98 (216)
.+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 122357899999999984
No 291
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.38 E-value=2e-11 Score=96.97 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=90.6
Q ss_pred eEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH----------HHHHHHHHHHHHHhc-CC
Q 027949 51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS----------FNNIRNWIRNIEQHA-SD 119 (216)
Q Consensus 51 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~-~~ 119 (216)
......+.+.+ ..+.++|.+|+...+.-|..++.+++++|||+++++.+- +.+...++..+.... -.
T Consensus 184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 35555666666 788899999999888889999999999999999987422 222223333333221 14
Q ss_pred CCcEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----h-----CCeEEEEecCCCCCHHHHHHHHHH
Q 027949 120 NVNKILVGNKADMDES--------------KRAVPTSKGQALADE-----Y-----GIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 120 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
+.++++++||.||..+ ...-..+++..+... + .+-...+.|.+..+|+.+|..+.+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 6899999999998331 112233444444321 1 245667789999999999999999
Q ss_pred HHHHHhhc
Q 027949 176 DIKQRLAD 183 (216)
Q Consensus 176 ~i~~~~~~ 183 (216)
.+.+..-+
T Consensus 342 ~Ii~~nlk 349 (354)
T KOG0082|consen 342 TIIQNNLK 349 (354)
T ss_pred HHHHHHHH
Confidence 99887544
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=4e-12 Score=98.05 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=76.2
Q ss_pred cccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (216)
+++..+.+.+++++|++++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+. .....+....+ ...+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~-~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD-EDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC-HHHHHHHHHHH-HHCCC
Confidence 567778888999999999999999988 88999999876654 37899999999999542 22222334444 35788
Q ss_pred eEEEEecCCCCCHHHHHHHHH
Q 027949 154 KFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 154 ~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
+++++||++|.|++++|+.|.
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred eEEEEecCCchhHHHHHhhhc
Confidence 999999999999999998876
No 293
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.37 E-value=7.7e-12 Score=98.03 Aligned_cols=141 Identities=21% Similarity=0.309 Sum_probs=77.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc----------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc-------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 76 (216)
..++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4699999999999999999999987654321 12333444445556678889999999999211
Q ss_pred -----------ccc-------cc--ccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 027949 77 -----------FRT-------IT--TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE- 134 (216)
Q Consensus 77 -----------~~~-------~~--~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~- 134 (216)
|.. .. ...-...|+++|.++.+... .-.++ ..++.+.. ..++|.|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCH
Confidence 000 00 11113578999999976421 11122 23334433 578999999999643
Q ss_pred CCCccChHHHHHHHHHhCCeEEEEe
Q 027949 135 SKRAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
++-......+..-...+++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 1112223344455566777766543
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=6.7e-12 Score=110.66 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=78.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-C---------------ccccceeeeEEEEEEEE--CCeEEEEEEEeCC
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-T---------------SFITTIGIDFKIRTIEL--DGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~ 72 (216)
+.+..-+|+|+|..++|||||+.+|+...-. . +...+.+.......+.+ ++..+.++++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3455568999999999999999999753211 0 00111222222222323 4445789999999
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|+..|.......++.+|++|+|+|+...........|. .+... +.|.++++||+|...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc---CCCeEEEEECchhhc
Confidence 99888777778889999999999987753322222232 22222 467899999999753
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.34 E-value=1e-12 Score=100.68 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=57.7
Q ss_pred EEEEEeCCCcccccccccccc--------ccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
.+.|+||||+.++-..+.... ...-++++++|+.. +..+-. .++..+.-....+.|.+.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 688999999877554443322 34557888999754 333322 22222222222379999999999986
Q ss_pred CCCCc------c------------ChHHHHHHHHH---hC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q 027949 134 ESKRA------V------------PTSKGQALADE---YG-I-KFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 134 ~~~~~------~------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
+.... . .......++.- .+ . .++.+|+.+++|+++++..|-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 52100 0 01111112221 12 3 799999999999999999887654
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=1e-11 Score=85.64 Aligned_cols=114 Identities=31% Similarity=0.377 Sum_probs=79.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766643332 2222 222334456678889999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
++..+.+++..+ |...+........|.++++||.|+.+.. ....+.. ..++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988765 7666655555568889999999984322 2332222 245677889988873
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=4.4e-12 Score=101.96 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=77.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-Cccccc-e-eeeEEEEEEEECCeEEEEEEEeCCCccccccccccc-----c
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITT-I-GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY-----Y 85 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 85 (216)
..++|+|+|.+|+|||||||+|.+-... ....++ . .+......+..- ..-.+.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4589999999999999999999763221 111111 1 111111111111 11258899999965433222222 4
Q ss_pred ccccEEEEEEeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCccC----hHHHHHHHHH----
Q 027949 86 RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM--DES----KRAVP----TSKGQALADE---- 150 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl--~~~----~~~~~----~~~~~~~~~~---- 150 (216)
...|.+|++.+- .|..... +...+... +.|+++|-+|.|. .++ ..... .+.+++.+.+
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 467877776663 2222222 22334433 7899999999995 111 01112 1233333322
Q ss_pred hC---CeEEEEecCCC--CCHHHHHHHHHHHHHHHh
Q 027949 151 YG---IKFFETSAKTN--LNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 151 ~~---~~~~~~Sa~~~--~gi~~l~~~l~~~i~~~~ 181 (216)
.+ .++|.+|+.+- .++..|.+.|.+.+..+.
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 37999999764 567778877777665543
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.33 E-value=6.1e-11 Score=95.62 Aligned_cols=141 Identities=17% Similarity=0.247 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC----CCC------------Cccccc---eeeeEEE---EEEEE---CCeEEEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG----SFT------------TSFITT---IGIDFKI---RTIEL---DGKRIKLQIW 69 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~i~ 69 (216)
.+.|.|+|+.++|||||+++|.+. +.. ....++ .++++.. .-+.+ ++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 389999999999999999999987 322 122233 3333333 22222 4555788999
Q ss_pred eCCCcccccc--------------c---------------cccccc-cccEEEEEE-eCC--C--HhHHHH-HHHHHHHH
Q 027949 70 DTAGQERFRT--------------I---------------TTAYYR-GAMGILLVY-DVT--D--ESSFNN-IRNWIRNI 113 (216)
Q Consensus 70 D~~G~~~~~~--------------~---------------~~~~~~-~~d~~i~v~-d~~--~--~~~~~~-~~~~~~~~ 113 (216)
|++|...-.. - ....+. ++++.|+|. |.+ + ++.+.. -..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999321100 0 122234 688888888 764 1 112222 23355555
Q ss_pred HHhcCCCCcEEEEEeCCC-CCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 114 EQHASDNVNKILVGNKAD-MDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 114 ~~~~~~~~p~ivv~nK~D-l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
... ++|+++|+|+.| ..+ ...+....+..+++++++.+|+..
T Consensus 177 k~~---~kPfiivlN~~dp~~~----et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHPYHP----ETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred Hhc---CCCEEEEEECcCCCCc----hhHHHHHHHHHHhCCceEEEEHHH
Confidence 544 799999999999 322 244445566677888888887753
No 299
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.32 E-value=1.4e-11 Score=89.39 Aligned_cols=151 Identities=20% Similarity=0.127 Sum_probs=83.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEE---------------EEEEE--------------------
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------------RTIEL-------------------- 59 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~-------------------- 59 (216)
.++|.|.|++|||||+|+.+++..-.........+.+... ..+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999876532111111111111111 00000
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
+.....+.|++.+|. ... .-++.-..+.-|+|+|....+.... +-...+ ...-++|+||.||.+.- ..
T Consensus 93 ~~~~~Dll~iEs~GN-L~~--~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i------~~aDllVInK~DLa~~v-~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN-LVC--PFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI------FKADLLVINKTDLAPYV-GA 160 (202)
T ss_pred cCCcCCEEEEecCcc-eec--ccCcchhhceEEEEEECCCCCCCcc--cCCCce------eEeeEEEEehHHhHHHh-Cc
Confidence 001135555666652 000 1111112337888999877642110 000001 01238899999997633 33
Q ss_pred ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 140 PTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 140 ~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
+.+...+-+++.+ .+++++|+++|+|+++++.|+....
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3444444444443 7999999999999999999987653
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.8e-11 Score=93.38 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC----C---CCccccceeeeEEEEEEEE-------CCeEEEEEEEeCCCcccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS----F---TTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~~ 81 (216)
+++.++|.-.+|||||.++|..-. + +.+...+.+.+.....+.. .++...+.++|.||+...-...
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 999999999999999999996522 2 2233344555555555444 3445788999999986433222
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHh-------C
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP--TSKGQALADEY-------G 152 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~-------~ 152 (216)
..-..-.|.+++|+|+....--..++-++ +-+.. ....+||+||+|+.++....+ .+..+...+.+ +
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~ 163 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGN 163 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCC
Confidence 22233468899999987643323332221 11111 245688899999654322211 12233333322 1
Q ss_pred CeEEEEecCCC----CCHHHHHHHHHHHHHH
Q 027949 153 IKFFETSAKTN----LNVEEVFFSIARDIKQ 179 (216)
Q Consensus 153 ~~~~~~Sa~~~----~gi~~l~~~l~~~i~~ 179 (216)
.|++++||.+| +++.++.+.|.+.+.+
T Consensus 164 ~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 164 SPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 69999999999 6777777776666554
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.31 E-value=6.4e-11 Score=90.33 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=81.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
.....|+|+|.+|+|||||++.+.+...........+. . ...... ...+.++|+||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~~--~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTGK--KRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEecC--CceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 34477899999999999999999875221111111111 1 111123 3578899999863 22 223457899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHH-HHHHh--CCeEEEEecCCCC
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNL 164 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~ 164 (216)
+++|++....... ...+..+... +.|.+ +|+||+|+.+..... ....++. +..+. +.+++.+||+++-
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999976443222 2233333322 56754 599999986422111 1122222 22222 3699999999873
No 302
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=5.2e-12 Score=93.44 Aligned_cols=147 Identities=21% Similarity=0.308 Sum_probs=97.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA 88 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 88 (216)
.-||+++|.+|+|||++-..+..+-.. ....++.+.+.....+.+-|. ..+.+||.+|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999987776643322 233455556666666666543 67899999998742 22456678899
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCC-ccCh----HHHHHHHHHhCCeEEEEec
Q 027949 89 MGILLVYDVTDESSFNNIRNWIR---NIEQHASDNVNKILVGNKADMDESKR-AVPT----SKGQALADEYGIKFFETSA 160 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~----~~~~~~~~~~~~~~~~~Sa 160 (216)
+++|+|||++..+-..++..+-. .+..+. +...+++.+.|.|+..... +... +..+.+.....+.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998876666655444 333333 3567788899999864322 1111 2233333444578888887
Q ss_pred CCC
Q 027949 161 KTN 163 (216)
Q Consensus 161 ~~~ 163 (216)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 754
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.5e-11 Score=102.90 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC------------Ce----EEEEEEEeCCCcccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRT 79 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~G~~~~~~ 79 (216)
.-+||+|...+|||-|+..+.+.++......+.+.......+... +. ---+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 558999999999999999999877765444444322222222111 10 01356789999999999
Q ss_pred ccccccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCc-------cCh---
Q 027949 80 ITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRA-------VPT--- 141 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~-------~~~--- 141 (216)
+.......||++|+|+|+... .+++.+ ..++ ..+.|+||.+||+|.... ... ...
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 998888999999999999764 333332 2232 337999999999994211 000 000
Q ss_pred --------HHHHHHHHH-h-----------C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 142 --------SKGQALADE-Y-----------G--IKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 142 --------~~~~~~~~~-~-----------~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
..+..|+.. + + +.++++||..|+||.+|+.||++.....+.+
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 011111110 0 1 5789999999999999999999877665543
No 304
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=8.9e-11 Score=97.33 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=101.9
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHc-------------------------------CCCCCccccceeeeEEEEEEE
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD-------------------------------GSFTTSFITTIGIDFKIRTIE 58 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (216)
..+...+.++|+|...+|||||+.+++. .+...+...+.+++.....+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f- 250 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF- 250 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE-
Confidence 3455679999999999999999999865 11112344455544444444
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHH-----HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-----NWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
+.....++|.|+||+..|-.....-..++|++++|+|++..+-...+. +....+.+..+ -..++|++||+|+.
T Consensus 251 -es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 251 -ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLV 328 (603)
T ss_pred -ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeeccccc
Confidence 455588999999998888777777778899999999998643211111 12222333332 34567789999986
Q ss_pred CCC---CccChHHHHHHH-HHhC-----CeEEEEecCCCCCHHHH
Q 027949 134 ESK---RAVPTSKGQALA-DEYG-----IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 134 ~~~---~~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~~l 169 (216)
+=. .......+..|. ...| +.|+++|+..|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 411 122233445555 3334 58999999999885543
No 305
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.27 E-value=3e-11 Score=107.92 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=81.9
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEEC-------------
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD------------- 60 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~------------- 60 (216)
.+.+..-+|+|+|..++|||||+++|+...-. .+...+.+.......+.+.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34566789999999999999999999754311 0111122222222233332
Q ss_pred -CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
+..+.++++||||+..|-......++.+|++|+|+|+...-......-|. .+.. .+.|+++++||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH---CCCCEEEEEECCccc
Confidence 22478899999999988877777789999999999998764433333232 2322 368999999999975
No 306
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.27 E-value=5.4e-11 Score=92.66 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=60.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR---- 78 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~---- 78 (216)
|+++|.||+|||||+|+|++........|+.+.+.....+.+.+.. ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988766666777777777777775532 258999999954211
Q ss_pred ccc---ccccccccEEEEEEeCC
Q 027949 79 TIT---TAYYRGAMGILLVYDVT 98 (216)
Q Consensus 79 ~~~---~~~~~~~d~~i~v~d~~ 98 (216)
.+. ...++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122 22356799999999874
No 307
>PTZ00416 elongation factor 2; Provisional
Probab=99.25 E-value=3e-11 Score=107.75 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEEC--------CeEEEEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ 67 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (216)
.+..-+|+|+|..++|||||+++|+...-. .+...+.+.......+.+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 455669999999999999999999863211 0011112222222233333 2246789
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
++||||+..|.......++.+|++|+|+|+.+.-..... ..+..+... +.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence 999999988877777788999999999999875433322 223333332 68999999999975
No 308
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.25 E-value=9.7e-12 Score=96.39 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=107.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------cccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT 82 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~ 82 (216)
.....-|.|+|..|+|||||+++|++........-+.+.+......+..+. ..+.+.||.|.-+ |.. ..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TL 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TL 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HH
Confidence 344467899999999999999999977766555555666666666655443 3567789999421 222 22
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE----EEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----ILVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
.-+..+|.++.|+|+++|+.-.+....+..+.+..-...|. +=|-||.|..+...+ ..++ .-+.+
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n--~~v~i 321 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKN--LDVGI 321 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccC--Ccccc
Confidence 33467999999999999987777777776666653222333 335688886432211 1112 14677
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 159 SAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
||.+|+|++++...+-..+.....
T Consensus 322 saltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred ccccCccHHHHHHHHHHHhhhhhe
Confidence 999999999999988887766543
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.24 E-value=5.3e-11 Score=94.60 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS 142 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (216)
.+.+.|+||+|..... ...+..+|.++++...... .++..+...+. ..|.++|+||+|+.+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3788899999854222 2345567888777543322 33333333332 46779999999986432110000
Q ss_pred -H----HHHHHHH-hC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 143 -K----GQALADE-YG--IKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 143 -~----~~~~~~~-~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
. ...+... .+ .+++.+||+++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0111111 12 36999999999999999999998754
No 310
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4e-10 Score=89.60 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC----------------eEEEEEEEeCCCcc---
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------------KRIKLQIWDTAGQE--- 75 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~--- 75 (216)
.+++.++|.||+|||||+|+++.......+.|..++++....+.... ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999999887667778888888877765521 23578899998832
Q ss_pred -cccccc---ccccccccEEEEEEeCCC
Q 027949 76 -RFRTIT---TAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 76 -~~~~~~---~~~~~~~d~~i~v~d~~~ 99 (216)
+-..+- .+-+|++|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222233 334588999999999874
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.22 E-value=9.1e-11 Score=85.41 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=44.0
Q ss_pred EEEEEeCCCccc----cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949 65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130 (216)
Q Consensus 65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (216)
.+.|+|+||... ....+..+++.+|++|+|.++...-+-.....+.+..... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 577899999643 3356777889999999999999866555554454444433 34488889985
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=2.8e-10 Score=96.65 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------c-
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------I- 80 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~- 80 (216)
.+-++.++|+|+|.+|+||||++|.|++....... ....++.........++ ..+.++||||...... +
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 34567789999999999999999999998643222 11222223233334455 6789999999654211 1
Q ss_pred --cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027949 81 --TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDE 134 (216)
Q Consensus 81 --~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~ 134 (216)
...++. ..|++|||..+........-..++..+...++. -..+|||.|+.|..+
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111322 479999998876433221222344444443331 145688899999653
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.18 E-value=3.9e-11 Score=91.12 Aligned_cols=156 Identities=21% Similarity=0.162 Sum_probs=87.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC------CC-----CCccccc---------------eeeeEEEEEEEECC------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG------SF-----TTSFITT---------------IGIDFKIRTIELDG------ 61 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~------~~-----~~~~~~~---------------~~~~~~~~~~~~~~------ 61 (216)
..+.|.|.|+||+|||||++.|... .+ +++...+ .....+.+.+-..+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4579999999999999999998541 10 1111110 00112222222211
Q ss_pred ------------eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949 62 ------------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (216)
Q Consensus 62 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (216)
-.+.+.|++|.|.-.... ....-+|.+++|......+..+.++.-+-++ .=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 126788888887432222 2234589999998876655544444433233 23899999
Q ss_pred CCCCCCCCccChHHHHHHHHHh-----C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 130 ADMDESKRAVPTSKGQALADEY-----G--IKFFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~-----~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
+|.+.+. ....+++...... + .+++.+||.++.|++++++.|.++......
T Consensus 177 aD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 177 ADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp -SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 9964322 2222333222211 1 489999999999999999999887666544
No 314
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.17 E-value=2.4e-11 Score=93.57 Aligned_cols=109 Identities=21% Similarity=0.167 Sum_probs=70.1
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS 142 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (216)
.+.+.|++|.|.-.... ....-+|.+++|.-..-.+..+.++.-+-++- =++|+||.|...++. ...
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~--a~r 209 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEK--AAR 209 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHH--HHH
Confidence 36788889988543322 23345888888876665665555555433332 289999999644321 111
Q ss_pred HHHHH-------HHHhCC--eEEEEecCCCCCHHHHHHHHHHHHHHHhhcc
Q 027949 143 KGQAL-------ADEYGI--KFFETSAKTNLNVEEVFFSIARDIKQRLADT 184 (216)
Q Consensus 143 ~~~~~-------~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 184 (216)
++... ....+| +++.+||.+|+|++++++.|.++........
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 11111 122233 8999999999999999999999887765554
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.17 E-value=2.2e-10 Score=89.34 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=39.5
Q ss_pred CcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 121 VNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
.+-++|+||+|+.+. .....+......+.. ..+++.+||++|+|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999998642 122333344444443 3799999999999999999999763
No 316
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-10 Score=96.06 Aligned_cols=168 Identities=26% Similarity=0.395 Sum_probs=124.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+|+.|+|..++|||.|+.+++...+.....+..+ .+...+..++....+.+.|.+|. ....|..++|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----chhhhhhhccceEEE
Confidence 38999999999999999999998887654444333 45556667788888889999884 244556679999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHH-HHHhCCeEEEEecCCCCCHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE-SKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|.+.+..++..+..+...+..+.. ..+|+++++++.-... ..+.+.....+.+ +....+.||++++.+|.++..+|.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 999999999999887777765443 3578888887754321 1223333344444 444558999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCC
Q 027949 172 SIARDIKQRLADTDSRAE 189 (216)
Q Consensus 172 ~l~~~i~~~~~~~~~~~~ 189 (216)
.+...+...++.+.....
T Consensus 183 ~~~~k~i~~~~~qq~~~~ 200 (749)
T KOG0705|consen 183 EVAQKIVQLRKYQQLPAS 200 (749)
T ss_pred HHHHHHHHHHhhhhcccc
Confidence 999998888666554433
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=3.5e-10 Score=86.47 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=42.5
Q ss_pred EEEEEEeCCCccc-------------cccccccccc-cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949 64 IKLQIWDTAGQER-------------FRTITTAYYR-GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (216)
Q Consensus 64 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (216)
..+.++|+||... ...+...+++ ..+++++|+|+...-.-.....+.+.+. +.+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4788999999642 1123455666 4568999998865322222223333333 237899999999
Q ss_pred CCCCC
Q 027949 130 ADMDE 134 (216)
Q Consensus 130 ~Dl~~ 134 (216)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99754
No 318
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7.4e-11 Score=91.47 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=104.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeE--EEEEE----------------EE--C----CeEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDF--KIRTI----------------EL--D----GKRIK 65 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~--~~~~~----------------~~--~----~~~~~ 65 (216)
...++|.++|.-.-|||||.++|.+--... +...+.+... ....+ .. . .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 345999999999999999999998722110 0001111000 00000 00 0 12257
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHH
Q 027949 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKG 144 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~ 144 (216)
+.|+|.||++-.-....+-..-.|++++|+.++.+.--.+..+-+..+.-.. -..++++=||+||...+++ .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7899999997543333333344699999999987543333333223333322 3567888999999754332 334566
Q ss_pred HHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 145 QALADE---YGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 145 ~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
++|.+. .+.+++++||..+.|||.++++|.+.+..-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 666653 347999999999999999999998887653
No 319
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.15 E-value=7.6e-10 Score=91.19 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=83.5
Q ss_pred EEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHh-cCC
Q 027949 52 FKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASD 119 (216)
Q Consensus 52 ~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~ 119 (216)
.....+.+ .+ ..+.++|.+|+...+.-|..++.+++++|||+++++. ..+.+...++..+... .-.
T Consensus 225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 33445555 55 6789999999998889999999999999999998753 2244444445444432 224
Q ss_pred CCcEEEEEeCCCCCC-----CC----------Cc--cChHHHHHHHHH------------hCCeEEEEecCCCCCHHHHH
Q 027949 120 NVNKILVGNKADMDE-----SK----------RA--VPTSKGQALADE------------YGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 120 ~~p~ivv~nK~Dl~~-----~~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+.|++|++||.|+.. .. .. -..+.+..+... ..+.+..++|.+...+..+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 789999999999721 00 11 233445555432 12356688999999999999
Q ss_pred HHHHHHH
Q 027949 171 FSIARDI 177 (216)
Q Consensus 171 ~~l~~~i 177 (216)
+.+.+.|
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 9887754
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.13 E-value=1.1e-09 Score=86.57 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=83.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCCccc----
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---- 76 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---- 76 (216)
.....+.|+++|+.|+|||||+|.|++...... ..++.........+.-++..+.++++||||.-.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 346679999999999999999999998743322 224444555556666688889999999999211
Q ss_pred --------------ccc-------cccc-cc--ccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 77 --------------FRT-------ITTA-YY--RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 77 --------------~~~-------~~~~-~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
++. ..+. .+ ..+|+++|.+..+. ..+..+. ..++.+.. ..-+|-|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccc
Confidence 000 0111 11 24688888887543 2222221 23333433 456788899999
Q ss_pred CCC-CCCccChHHHHHHHHHhCCeEE
Q 027949 132 MDE-SKRAVPTSKGQALADEYGIKFF 156 (216)
Q Consensus 132 l~~-~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
... .+.....+.++.....+++++|
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 632 1222222334444445555555
No 321
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.8e-09 Score=85.98 Aligned_cols=147 Identities=20% Similarity=0.302 Sum_probs=89.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc---------cccceeeeEEEEEEEECCeEEEEEEEeCCCccc-----
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----- 76 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----- 76 (216)
.....+.++|+|.+|.|||||+|.|+...+... ...+.........+.-+|..+.++++||||...
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 455679999999999999999999988754322 223445555555666678889999999999221
Q ss_pred --cc------------------cccccccc--cccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 77 --FR------------------TITTAYYR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 77 --~~------------------~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
|. .+.+.-+. .+|+++|.+..+.- .+..+. ..+..+. ....+|-|+.|+|..
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence 10 01111222 57889998885432 112211 1223333 256788889999963
Q ss_pred C-CCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 134 E-SKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
. .+.......+..-+...++.+|......
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 2 2222333445555666677777655443
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=4.3e-10 Score=83.93 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=93.3
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC---------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---c
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---F 77 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~ 77 (216)
.+..+.++|+|+|.+|.|||||+|.+....+.. ....+..+......+.-++...+++++||||... .
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 355678999999999999999999997644321 2223444445555566678788999999999321 1
Q ss_pred cccc-----------------------ccccc--cccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 78 RTIT-----------------------TAYYR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 78 ~~~~-----------------------~~~~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
...| ...+. .+|+++|.+..+. .++..+. ..++.+.+ -.-++-|+-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 1111 12222 3567777776553 2222221 12333332 345777889999
Q ss_pred C-CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 132 M-DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 132 l-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
- .=+++....+.++.-...+++.+++-.+.+-+.-+..++.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 3 2222333344455556677888887776655444444443
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=9.9e-10 Score=95.31 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=93.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+..-+|.|+|.-++|||||..+|+...- ..+...+.++.....++.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 45567899999999999999999865211 012234455666666777775 47899999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ 145 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 145 (216)
+-.|-......++-+|++++|+|+...-....-.-|.+... .+.|.++++||+|...+......+++.
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~ 153 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLK 153 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHH
Confidence 99999889999999999999999987654444333443332 278999999999976544443444333
No 324
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.4e-09 Score=87.82 Aligned_cols=152 Identities=23% Similarity=0.188 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
-|+..|.-.-|||||++.+.+.... .....+.+.+.........+ ..+.|+|.||++.+-.....-+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4678899999999999999987643 33445555555555444444 588999999998877766666778999999
Q ss_pred EEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH---HHhCCeEEEEecCCCCCHH
Q 027949 94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA---DEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~ 167 (216)
|++.++. ++.+.+ ..+ .... ....++|+||+|..++.+ ..+...... .....++|.+|+.+|+||+
T Consensus 80 vV~~deGl~~qtgEhL----~iL-dllg-i~~giivltk~D~~d~~r--~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 80 VVAADEGLMAQTGEHL----LIL-DLLG-IKNGIIVLTKADRVDEAR--IEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEeCccCcchhhHHHH----HHH-HhcC-CCceEEEEeccccccHHH--HHHHHHHHHhhcccccccccccccccCCCHH
Confidence 9999643 333333 112 2221 234589999999865331 112222222 2233688999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 168 EVFFSIARDIK 178 (216)
Q Consensus 168 ~l~~~l~~~i~ 178 (216)
+|.+.|.+...
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999998875
No 325
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.4e-09 Score=80.41 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=92.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHc----------------CCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSD----------------GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
...++|..+|.-+-|||||..+++. ...+.+...+.++......++..+ ..+..+|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHH
Confidence 4569999999999999999988754 112233344455444444444455 5567789999988
Q ss_pred cccccccccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCc--cChHHHHHHHHH
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRA--VPTSKGQALADE 150 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~--~~~~~~~~~~~~ 150 (216)
|-.....-..+.|+.|+|+++.+. .+-+++ .+.+.- +.|. ++++||+|+.+.... .-..+.+++...
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-----Llarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-----LLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-----hhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 876666666789999999999884 332222 122221 5655 555899999763221 112446777777
Q ss_pred hC-----CeEEEEecCC
Q 027949 151 YG-----IKFFETSAKT 162 (216)
Q Consensus 151 ~~-----~~~~~~Sa~~ 162 (216)
++ .|++.-||..
T Consensus 161 y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 161 YGFPGDDTPIIRGSALK 177 (394)
T ss_pred cCCCCCCcceeechhhh
Confidence 76 5788888765
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=3.9e-09 Score=78.48 Aligned_cols=94 Identities=22% Similarity=0.204 Sum_probs=64.4
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHh
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEY 151 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~ 151 (216)
+...+..+++.+|++++|+|+.++... |...+.... .+.|+++|+||+|+.+. .........+. ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence 466778888999999999999876421 112222222 36899999999998642 22233333333 223
Q ss_pred CC---eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 152 GI---KFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 152 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+. .++.+||++|.|+++++++|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 32 6899999999999999999988763
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5e-09 Score=88.34 Aligned_cols=119 Identities=25% Similarity=0.282 Sum_probs=84.7
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-----------------cceeeeEEEEEE---EECCeEEEEEEE
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----------------TTIGIDFKIRTI---ELDGKRIKLQIW 69 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~i~ 69 (216)
.......+|+++|.-++|||+|+..|..+..+..+. .+.+......++ ..++.++-+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 355677899999999999999999997755432111 112222222222 225677889999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
||||+-.|.......++.+|++++++|+-+.-.+..-.-..+.+ ....|+++|+||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 99999888888888889999999999998775554432222222 236899999999995
No 328
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.95 E-value=8.4e-08 Score=72.42 Aligned_cols=110 Identities=21% Similarity=0.190 Sum_probs=77.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYR 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~ 86 (216)
-..+|+++|.|.+|||||+..++.-.........++.++....+.+++ ..+++.|.||.-+-. ...-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 347899999999999999999987665544445566788889999999 678889999954322 23445567
Q ss_pred cccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEE
Q 027949 87 GAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKIL 125 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~iv 125 (216)
.+|.+++|.|++..+.-.. ++..+..+--+.....|-+-
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy 178 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIY 178 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeE
Confidence 8999999999988765443 34455554333333344433
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.94 E-value=6e-09 Score=84.15 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=66.2
Q ss_pred cccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
.+.+..+.++|.+++|+|+.++. ....+..|+..+.. .+.|++||+||+||.+... ...........+..++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence 34555688999999999998876 44455667655532 3789999999999853211 12223333466789999
Q ss_pred EecCCCCCHHHHHHHHHH
Q 027949 158 TSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~~l~~ 175 (216)
+||.++.|+++|+++|..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
No 330
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.1e-09 Score=82.09 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=81.0
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeE-------------------------
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKR------------------------- 63 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------- 63 (216)
.+.+....|+++|.-..||||||+.|+.++++.... +..++++....+.-+...
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 445566889999999999999999999999885443 333344555444332111
Q ss_pred --------------EEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC
Q 027949 64 --------------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS 118 (216)
Q Consensus 64 --------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 118 (216)
-.++|+||||.-+ |.....=|...+|.+|++||.---+--.+....+..+. .
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G 209 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---G 209 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---C
Confidence 1678999999432 22223345568999999999755443344444444443 3
Q ss_pred CCCcEEEEEeCCCCCC
Q 027949 119 DNVNKILVGNKADMDE 134 (216)
Q Consensus 119 ~~~p~ivv~nK~Dl~~ 134 (216)
+.-.+-||+||+|..+
T Consensus 210 ~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVD 225 (532)
T ss_pred CcceeEEEeccccccC
Confidence 3567889999999765
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=98.92 E-value=8.8e-09 Score=83.15 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=66.2
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
..++|.+++|++.....++..+..|+..+.. .+.|+++|+||+||.+.................+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4579999999999877788888888775543 3689999999999964221111222333345667899999999999
Q ss_pred CHHHHHHHHHH
Q 027949 165 NVEEVFFSIAR 175 (216)
Q Consensus 165 gi~~l~~~l~~ 175 (216)
|+++++++|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.92 E-value=7.2e-09 Score=81.90 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred ccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949 82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
...+.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+||.+. ........+....+.+++.+||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~---~~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDD---EEEELELVEALALGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCCh---HHHHHHHHHHHhCCCeEEEEEC
Confidence 33478899999999999987 777888887766543 6899999999998542 1112223334456789999999
Q ss_pred CCCCCHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIAR 175 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~ 175 (216)
+++.|+++++.+|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999888763
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.91 E-value=4.3e-09 Score=75.73 Aligned_cols=94 Identities=21% Similarity=0.184 Sum_probs=62.8
Q ss_pred ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
+.+....++++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+.+.. .......+....+.+++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKE---VLEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCCCcEEE
Confidence 3455666778999999999987643222 11222221 1268999999999985311 111122333445678999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 027949 158 TSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+||+++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987764
No 334
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.3e-08 Score=82.18 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=82.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCC--------------C------CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD--GSF--------------T------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
..+|+-.|.+|||||..+|+- +.. . -+...+......+..+.+++ ..++|.||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence 458999999999999999854 100 0 01122333333344444454 88999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (216)
+.|..-...-+.-+|.+++|+|+...-.- +..+++.... . .++|++-++||.|-.. ....+.+.++-..+++
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcr-l--R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCR-L--RDIPIFTFINKLDREG---RDPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHh-h--cCCceEEEeecccccc---CChHHHHHHHHHHhCc
Confidence 98887777777789999999998654322 2223332222 2 3799999999999532 3344555555555553
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.1e-08 Score=81.21 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=63.2
Q ss_pred ccccccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 84 YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
...++|++++|+|+.++..... +..|+..+.. .+.|+++|+||+|+.+. ..............+.+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD--LEEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC--HHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3588999999999988865444 4556655543 36899999999998531 1122233444556678999999999
Q ss_pred CCCHHHHHHHHH
Q 027949 163 NLNVEEVFFSIA 174 (216)
Q Consensus 163 ~~gi~~l~~~l~ 174 (216)
+.|+++++.+|.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998774
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.79 E-value=1.6e-08 Score=71.53 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+++|+|.+|+|||||+|++++..... ...++ .+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPG--KTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCC--cccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877542 22222 233344455554 5789999996
No 337
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.77 E-value=8.2e-08 Score=72.85 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=83.8
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCC
Q 027949 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~ 120 (216)
.....++++. ++++.+|.+|+..-+.-|...+....++|||+..+.. ..+.+...++..++.++ -..
T Consensus 192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 4444555555 7899999999988888899999999999999987652 22344444555554432 235
Q ss_pred CcEEEEEeCCCCCCC-----------------------------CCccChHHHHHHHHH-------------hCCeEEEE
Q 027949 121 VNKILVGNKADMDES-----------------------------KRAVPTSKGQALADE-------------YGIKFFET 158 (216)
Q Consensus 121 ~p~ivv~nK~Dl~~~-----------------------------~~~~~~~~~~~~~~~-------------~~~~~~~~ 158 (216)
+.+++++||.|+..+ ......-.++-|.+. +-+-+.++
T Consensus 270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT 349 (379)
T KOG0099|consen 270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 349 (379)
T ss_pred hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence 778999999997221 000001111112111 11456688
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 027949 159 SAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
.|.+.++|..+|+...+.+....
T Consensus 350 cAvDTenIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 350 CAVDTENIRRVFNDCRDIIQRMH 372 (379)
T ss_pred EeechHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887776543
No 338
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=7.8e-08 Score=72.17 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=98.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (216)
...+|+++|...+||||+-+....+-.+.+......+.. ...-.+.+.-+.+.+||.||+-.+-. -....++.+.+
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 336799999999999998877776543322211111000 00001223447899999999754322 13456788999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCCccC-hHHHHHH----HHH-----hCCeEEEE
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQH--ASDNVNKILVGNKADMDESKRAVP-TSKGQAL----ADE-----YGIKFFET 158 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~----~~~-----~~~~~~~~ 158 (216)
+|||+|+.+.. ++.+..+...+... -.+++.+=|.+.|.|...+...+. ...+..- ... ..+.|+.+
T Consensus 105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999996542 22222222222221 124677788899999543222221 1111111 111 22578888
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhccc
Q 027949 159 SAKTNLNVEEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 185 (216)
|..+- +|-+.|..+++.+..+..-.+
T Consensus 184 SIyDH-SIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 184 SIYDH-SIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred eecch-HHHHHHHHHHHHHhhhchhHH
Confidence 87654 788899998888887765543
No 339
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=9.2e-09 Score=78.55 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=89.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI 80 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 80 (216)
.+...+++++|.+|+|||+|++.+........... ..+.......+.+.. .+.++|.||. ..+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45568999999999999999999987654422222 333334444455554 5677899991 123334
Q ss_pred ccccccc---ccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----ccC------hHHHH
Q 027949 81 TTAYYRG---AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR----AVP------TSKGQ 145 (216)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~------~~~~~ 145 (216)
...++.+ .--+++++|++-+- .-.....|+ .+ .+.|+.+|.||+|-..... ... ...+-
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~---ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL---GE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH---hh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 4444322 22345566665431 111122232 22 2799999999999632111 011 11111
Q ss_pred HHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 146 ALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
........+++.+|+.++.|++.|.-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 112222357889999999999988665543
No 340
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.73 E-value=1.3e-07 Score=75.38 Aligned_cols=160 Identities=20% Similarity=0.151 Sum_probs=94.8
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC--------------ccccceeeeEEEEEEEECCe-------------
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------------SFITTIGIDFKIRTIELDGK------------- 62 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~------------- 62 (216)
++....+.|.++|.-+.|||||+-.|.-...+. +...+.+.+.....+-+++.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345566999999999999999998886644321 11112222233333322211
Q ss_pred --------EEEEEEEeCCCccccccc--cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 63 --------RIKLQIWDTAGQERFRTI--TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 63 --------~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
..-+.++|+.|++.|-.. ...+-.+.|..++++.+++..+-..-+- + .+.. .-..|++++++|+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-L-gi~~--a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-L-GIAL--AMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-h-hhhh--hhcCCEEEEEEeccc
Confidence 135678899999877542 2334457899999999988654222111 1 1111 126899999999999
Q ss_pred CCCCCc-cChHHHHHH----------------------HHHhC---CeEEEEecCCCCCHHHHHHHH
Q 027949 133 DESKRA-VPTSKGQAL----------------------ADEYG---IKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 133 ~~~~~~-~~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~~l~~~l 173 (216)
.++.+. --.+++..+ +.+.+ +|+|.+|+.+|+|++-|.+.+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 653321 011111111 11222 599999999999987554433
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.73 E-value=4e-08 Score=71.76 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=40.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...++++|+|.||+|||||+|+|.+.... ....++.+. ....+..+. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~--~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTK--SMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEc--ceEEEEeCC---CEEEEECcCC
Confidence 33489999999999999999999987653 334444443 333444443 5788999983
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.71 E-value=4.5e-08 Score=79.77 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=67.8
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHHH
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ----ALAD 149 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 149 (216)
.+.|..+...+.+.++++++|+|+.+... .|...+.+... +.|+++|+||+|+.+. ....+.+. +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHH
Confidence 45677777888889999999999976541 23334443332 5799999999998642 22233333 3456
Q ss_pred HhCC---eEEEEecCCCCCHHHHHHHHHHH
Q 027949 150 EYGI---KFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 150 ~~~~---~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
..++ .++.+||++|.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6675 58999999999999999998654
No 343
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.70 E-value=4.6e-08 Score=78.94 Aligned_cols=83 Identities=18% Similarity=0.025 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCcccc--
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF-- 77 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~-- 77 (216)
+++.|+|.|++|||||++.|++... ...+.|..+.+.....+.+.+.. ..+.+.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999887 55555767677777777765432 36788999995331
Q ss_pred -----ccccccccccccEEEEEEeCC
Q 027949 78 -----RTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 78 -----~~~~~~~~~~~d~~i~v~d~~ 98 (216)
.......++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 112333467899999999985
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=6.2e-08 Score=69.79 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
.++|+++|.+|+|||||+|+|.+.... ....++.+ .....+..+. .+.++||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcCC
Confidence 478999999999999999999986543 23334333 2233333332 3678899983
No 345
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.1e-07 Score=75.70 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=103.4
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-----------------------cceeeeEEEEEEEEC------
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----------------------TTIGIDFKIRTIELD------ 60 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~------ 60 (216)
.+.-..++++|+|.-.+|||||+-.|...+.+.... ...+.+-....+.+.
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 344566999999999999999998876644321100 011111111112221
Q ss_pred ----CeEEEEEEEeCCCccccccccccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 61 ----GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 61 ----~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
....-++++|.+|+..|......-+. .-|..++|+++...-.+..-+- +..+. ..+.|++++++|+|+.+
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~---AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA---ALNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH---HhCCCeEEEEEeecccc
Confidence 12346788999999888764433322 2477888998877654433211 11111 12799999999999965
Q ss_pred CCC-----------------------ccChHHHHHHHHH----hCCeEEEEecCCCCCHHHHHH--HHHHHHHHHhhccc
Q 027949 135 SKR-----------------------AVPTSKGQALADE----YGIKFFETSAKTNLNVEEVFF--SIARDIKQRLADTD 185 (216)
Q Consensus 135 ~~~-----------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~--~l~~~i~~~~~~~~ 185 (216)
... ....+++...+.+ +-.|+|.+|+..|+|++-+.. .++......-++.+
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~ 397 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQ 397 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHH
Confidence 210 1122222222222 225999999999999775532 23332323333334
Q ss_pred CCCCCccccccCC
Q 027949 186 SRAEPQTIKINQP 198 (216)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (216)
....+.-+.+++.
T Consensus 398 L~q~~~eFqvdEi 410 (591)
T KOG1143|consen 398 LVQLPAEFQVDEI 410 (591)
T ss_pred HhcCcceeeHhHe
Confidence 4445555555554
No 346
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.66 E-value=8.5e-08 Score=75.26 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=66.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQER- 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~- 76 (216)
.+.+++.+||.|++|||||+|.|++......+.|..+++.....+.+.. ....++++|++|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3558999999999999999999999998888889888888887766522 235789999988432
Q ss_pred ---ccccc---ccccccccEEEEEEeCCC
Q 027949 77 ---FRTIT---TAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 77 ---~~~~~---~~~~~~~d~~i~v~d~~~ 99 (216)
-..+- .+-++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22223 334578999999998754
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=2.1e-07 Score=66.85 Aligned_cols=87 Identities=23% Similarity=0.131 Sum_probs=56.1
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+.. ........+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~--~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKE--VLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHH--HHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999988764432 12221 11122368999999999985321 111112223233356789999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 169 VFFSIARDIKQR 180 (216)
Q Consensus 169 l~~~l~~~i~~~ 180 (216)
+++.|.+...+.
T Consensus 76 L~~~i~~~~~~~ 87 (155)
T cd01849 76 KESAFTKQTNSN 87 (155)
T ss_pred HHHHHHHHhHHH
Confidence 999998775443
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.6e-07 Score=67.62 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=57.3
Q ss_pred ccccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949 84 YYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.+..+|++++|+|+.++.. ...+..++. . ...+.|+++|+||+|+.+.. ........+...+...++.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecc
Confidence 4567999999999998742 223333332 2 23358999999999985321 11122222222223345789999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIK 178 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~ 178 (216)
.+.|+++++++|.+...
T Consensus 79 ~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 79 NPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999977543
No 349
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.63 E-value=3.1e-08 Score=73.89 Aligned_cols=121 Identities=20% Similarity=0.208 Sum_probs=80.8
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKILVGNKA 130 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 130 (216)
..+.+.+.|.+|+..-+..|..++.+...++|++.++.. ..+++.+.++..+..+. -.+.++++++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 336777899999988888888888888888887766543 22333333444443321 1478899999999
Q ss_pred CCCCCC---------------CccChHHHHHHHHHh----C------CeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 131 DMDESK---------------RAVPTSKGQALADEY----G------IKFFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 131 Dl~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
|+.++. ...+.+.+++|..+. + +--..+.|.+.++|.-+|..+.+.+++..-
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 984321 123344555555432 1 223467889999999999999999988643
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.59 E-value=1.6e-07 Score=68.60 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=39.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
..++++++|.+|+|||||++++.+..+. ....++.+ .....+..+ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence 4479999999999999999999987753 22223333 333334443 35789999995
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.59 E-value=8.8e-08 Score=71.19 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
.+++++|.+|+|||||+|+|.+... .....++++ .....+..+. .+.++||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence 5799999999999999999998543 222334433 3344444443 4689999993
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=2.4e-07 Score=73.29 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=42.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
...++++|+|.+|+|||||+|+|.+.... ....++.+.. ...+..+. .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCcC
Confidence 34589999999999999999999987653 3344444433 34444443 47799999973
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=2.2e-07 Score=73.10 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=40.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
..++++|+|.+|+|||||+|+|.+.... ....++.+. ....+..+. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999987643 333344433 334444443 4689999997
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=2.9e-07 Score=66.16 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=38.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...+++++|.+|+||||+++++.+.... ...++.+.......+..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 3478899999999999999999976533 2223333333333333333 5889999983
No 355
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.53 E-value=1e-06 Score=66.99 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=65.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRGA 88 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 88 (216)
-+|.++|-|.+||||++..+.+.........+++.......+.+++ -++.+.|.||.-+- ........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999998765544444555666667777777 67889999995321 12345556778
Q ss_pred cEEEEEEeCCCHhHHHH
Q 027949 89 MGILLVYDVTDESSFNN 105 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~ 105 (216)
+.+++|.|+..|-+...
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 99999999887655443
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=5.3e-07 Score=83.71 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=68.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCcc------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA 83 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (216)
.+|+|++|+||||+++.- +..++... ..+.+-+. .....+.+ ..+++|++|..- ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999987 33333211 01111011 11111222 456889999321 1123444
Q ss_pred cc---------ccccEEEEEEeCCCH-----hH----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 84 YY---------RGAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 84 ~~---------~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
++ +-.|++|+++|+.+- +. ...++..+.++.+...-..|+.||+||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 33 237999999997652 11 23445567777777777899999999999754
No 357
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.52 E-value=2.2e-07 Score=74.49 Aligned_cols=56 Identities=32% Similarity=0.382 Sum_probs=42.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
..++++|+|.||+||||+||+|.+.... ....| +.+.....+..+. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence 4488999999999999999999998763 33334 4445555565655 3788999996
No 358
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-06 Score=72.85 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=81.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee-------------------------------------------ee
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-------------------------------------------ID 51 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------------------------------------------~~ 51 (216)
..||+|.|..++||||++|+++...+.+....-.+ ..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 48999999999999999999988543221110000 00
Q ss_pred EEEEEEEECCe-----EEEEEEEeCCCcc---ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE
Q 027949 52 FKIRTIELDGK-----RIKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123 (216)
Q Consensus 52 ~~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (216)
.....+.+... .-.+.++|.||.. +.......+...+|++|+|.++.+..+..+ +.++...... ...+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kpni 264 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPNI 264 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCcE
Confidence 00111222111 1256788999954 344556677788999999999977654333 3344444332 2334
Q ss_pred EEEEeCCCCCCCCCccChHHHHHHHHHhC--------CeEEEEecC
Q 027949 124 ILVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAK 161 (216)
Q Consensus 124 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 161 (216)
+|+-||+|...+ .....+++..-..++. -.+|++||+
T Consensus 265 FIlnnkwDasas-e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 265 FILNNKWDASAS-EPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEechhhhhcc-cHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 555688896432 2233334333333332 367888854
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.48 E-value=1.5e-07 Score=67.36 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+|++|||||||+|.|.+.... .....+..+......+...+. ..++||||...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 5799999999999999999986321 111222223333444555332 2577999976544
No 360
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.47 E-value=7.9e-06 Score=66.54 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC--------------Cccccceee-------eE---EEEEEEE-CCeEEEEEEEe
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT--------------TSFITTIGI-------DF---KIRTIEL-DGKRIKLQIWD 70 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~-------~~---~~~~~~~-~~~~~~~~i~D 70 (216)
+-|.|+|+--+||||||++|...-+. ....++.+. .+ ....+.. ++..+++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 88999999999999999998662110 001111110 00 1112333 56678999999
Q ss_pred CCCcc--------c------ccccccc---------------cccc-c-cEEEEEEeCC--C--HhHHHHHHH-HHHHHH
Q 027949 71 TAGQE--------R------FRTITTA---------------YYRG-A-MGILLVYDVT--D--ESSFNNIRN-WIRNIE 114 (216)
Q Consensus 71 ~~G~~--------~------~~~~~~~---------------~~~~-~-d~~i~v~d~~--~--~~~~~~~~~-~~~~~~ 114 (216)
+.|-- + ..+-|-. .+.. + -++++.-|.+ + ++.+..+.. .+.++.
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 98711 0 0111111 1111 1 2344544543 2 334433333 444444
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 115 QHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 115 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.. ++|+++++|-.+ .......+...++..+++++++.+++..
T Consensus 178 ~i---gKPFvillNs~~---P~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 178 EI---GKPFVILLNSTK---PYSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred Hh---CCCEEEEEeCCC---CCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 43 799999999987 3445566778888899999999988753
No 361
>PRK14974 cell division protein FtsY; Provisional
Probab=98.47 E-value=3.5e-07 Score=73.47 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=58.9
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|........ ..+ .-..|..++|+|+....... .....+.... ..--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhcC---CCCEEEEeeecCCC---
Confidence 568999999975432211 111 12467889999986543221 1122222211 23477899999632
Q ss_pred ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
..-.+..++...+.|+.+++ +|++++++..+=.+.+
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 22234455556788888886 7899988865433333
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=1.3e-06 Score=63.89 Aligned_cols=90 Identities=22% Similarity=0.150 Sum_probs=59.8
Q ss_pred ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
.....+.++|++++|+|+.++...... .+...+ .+.|+++|+||+|+.+.. ......++....+..++.+|
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~---~~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPK---KTKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChH---HHHHHHHHHHhcCCeEEEEE
Confidence 345567889999999999876432211 111111 257899999999985321 11112122233345789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~ 178 (216)
|+++.|++++...|...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999988764
No 363
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.3e-06 Score=68.77 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=89.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC----------------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
...++|.-+|.-.-|||||..+++.- +.+.+...+. ......+.+......+-=.|+||+..
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI--TIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI--TINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc--eEeeeeeeeeccccccccCCCCchHH
Confidence 45599999999999999999887551 1112223333 34444555544334555679999988
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHhC--
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP--TSKGQALADEYG-- 152 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~-- 152 (216)
|-.....-..+.|+.|+|+.++|..-- +.++-+-...+.. -..+++++||.|+.++..... .-+++++..+++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 766555556678999999999985322 2222111222221 244666799999874332222 134666777776
Q ss_pred ---CeEEEEecC
Q 027949 153 ---IKFFETSAK 161 (216)
Q Consensus 153 ---~~~~~~Sa~ 161 (216)
+|++.-||+
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 688877764
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.44 E-value=6.4e-07 Score=64.34 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=38.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...+++++|.+|+|||||+|.|.+... .....+..+.... .+..+ ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence 458899999999999999999998653 2233344443333 23333 25788999983
No 365
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=4.6e-06 Score=63.18 Aligned_cols=161 Identities=18% Similarity=0.261 Sum_probs=101.2
Q ss_pred EEEEEEcCCCC--cHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 16 IKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 16 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|-+|+ ||.+++.+|...++.........++++.+++.-......+.+.-.+--+++---......-.-++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 57899999999 9999999999988887777766666766665433322222222111111111111112233567899
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCC-------------------------------------
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDES------------------------------------- 135 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~------------------------------------- 135 (216)
+||++....+..+..|+..-... ...+ +.++||.|.++-
T Consensus 85 vfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 99999999988888887543222 1223 445899985320
Q ss_pred ----CC--ccChHHHHHHHHHhCCeEEEEecCC------------CCCHHHHHHHHHHHHHH
Q 027949 136 ----KR--AVPTSKGQALADEYGIKFFETSAKT------------NLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 136 ----~~--~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~l~~~l~~~i~~ 179 (216)
+. ........+++.++++.+++.++.. ..|+..+|.+|..++-.
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 00 0223346677888899999998843 24788888888766544
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.43 E-value=1.9e-06 Score=68.92 Aligned_cols=96 Identities=22% Similarity=0.166 Sum_probs=57.5
Q ss_pred EEEEEEeCCCcccccccc----cc-------c-cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 64 IKLQIWDTAGQERFRTIT----TA-------Y-YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~-------~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||+|........ .. . -...+..++|+|++... ..+.. ...+... -.+.-+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEECCC
Confidence 688999999975432210 01 1 12356789999998543 22222 1222221 124478899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
... ..-.+...+...++|+..++ +|++++++-..
T Consensus 271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 432 12345556677789998887 88888887544
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.41 E-value=6.3e-06 Score=62.87 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=53.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC--CCCCccc-cceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTI------TT 82 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~ 82 (216)
....-|.|+|++++|||+|+|.|++. .+..... ...+........... +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34578999999999999999999998 5542211 111111222222221 12367899999996543221 11
Q ss_pred ccccc--ccEEEEEEeCCCHh
Q 027949 83 AYYRG--AMGILLVYDVTDES 101 (216)
Q Consensus 83 ~~~~~--~d~~i~v~d~~~~~ 101 (216)
..+.. ++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12222 78888888776543
No 368
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.7e-06 Score=72.79 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=78.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
..=+|.+.-.-.+||||+-++++...- ..+...+.+.......+.|.+ +.++++||||+-
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~--~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD--YRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc--ceeEEecCCCce
Confidence 344677888889999999998765211 112223334444444555564 789999999998
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
.|--.....++-.|++++|+++...-.-.....|.+ +..+ +.|.+.++||.|.
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDR 168 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhh
Confidence 888888888899999999999876543333333433 3333 7899999999996
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.38 E-value=4.1e-06 Score=69.23 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCcccccccccc----c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 63 RIKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
.+.+.|+||+|.......... + ....+-+++|+|+.-..... .....+.+. -.+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a-- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA-- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC--
Confidence 368899999996543321111 1 12457789999987543222 222333322 235578899999532
Q ss_pred CccChHHHHHHHHHhCCeEEEEe
Q 027949 137 RAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+.......+.|+.+++
T Consensus 254 ---rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 ---KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred ---CccHHhhhHHHHCCCeEEEc
Confidence 12234445556666666553
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.36 E-value=9.6e-07 Score=71.46 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC-ccc-----cceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFI-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
++|+|.+|+|||||+|+|++..... ... .+..++.....+.+.+. ..++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 6899999999999999999765321 111 11112233333444322 2478999986655
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.35 E-value=2.6e-06 Score=69.38 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=58.0
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
..++|.+++|+++..+-....+..++..+... +.+.+||+||+||.+.. ....+....+ ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~-~~~~~~~~~~--~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA-EEKIAEVEAL--APGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH-HHHHHHHHHh--CCCCcEEEEECCCCc
Confidence 57899999999996443444555665555443 67889999999996421 1011222222 346799999999999
Q ss_pred CHHHHHHHHH
Q 027949 165 NVEEVFFSIA 174 (216)
Q Consensus 165 gi~~l~~~l~ 174 (216)
|+++|..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988874
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=2.5e-06 Score=61.49 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++++|..|+|||||++.++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998865
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.35 E-value=1.6e-06 Score=61.28 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred cccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949 83 AYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..+..+|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+.+.. .......+....+..++++||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE---QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH---HHHHHHHHHHhcCCeEEEEEe
Confidence 3457899999999998876533 333333322 1 368999999999985321 122344455556678999999
Q ss_pred CCCC
Q 027949 161 KTNL 164 (216)
Q Consensus 161 ~~~~ 164 (216)
.++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8775
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.34 E-value=5.4e-06 Score=65.01 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=59.0
Q ss_pred EEEEEEeCCCcccccccccc------------ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 64 IKLQIWDTAGQERFRTITTA------------YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~------------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||+|....+..... .-...|..++|+|++... ..+. ....+.+.. .+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEccC
Confidence 68899999997543322111 112378899999997542 2222 222222222 24578899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
... ..-.+..+....+.|+.+++ +|++++++-.+=.+
T Consensus 229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~ 265 (272)
T TIGR00064 229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPFDAD 265 (272)
T ss_pred CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHH
Confidence 532 22345555667788888887 78888887544333
No 375
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=3.2e-05 Score=54.90 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=77.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCC-Ccc--------------ccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE--------------RFR 78 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~--------------~~~ 78 (216)
..++|.|.|+||+||||++.++.+.--...+. . -.+....+.-++..+=|.+.|+. |.. .|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 45899999999999999999987532111111 1 12334444556666666666765 311 111
Q ss_pred cc-----------cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH
Q 027949 79 TI-----------TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQAL 147 (216)
Q Consensus 79 ~~-----------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 147 (216)
-. ....+..+|++ ++|--.|..+. ...+...+......+.|++.++.+.+-. ..+..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~--------P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH--------PLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC--------hHHHHh
Confidence 10 11122335543 44554443322 1234444555555578888877766521 122222
Q ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 148 ADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+..+.-++. .+.+|-+.+++.|...+.
T Consensus 150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 150 -KKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred -hhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 233333332 566676777777776553
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=5.4e-06 Score=67.81 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=56.1
Q ss_pred cccc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH----HHHHHHhCC---eEEE
Q 027949 86 RGAM-GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG----QALADEYGI---KFFE 157 (216)
Q Consensus 86 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~---~~~~ 157 (216)
...+ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.+. ....+.+ ..++...++ .++.
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 4444 899999998754 123333433332 6799999999998542 2222233 334555565 6899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 027949 158 TSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~~l~~~ 176 (216)
+||+++.|++++++.|.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998654
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.3e-07 Score=76.12 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=86.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
.-+|.|+..-.+||||...+++.- .++ .+...+.+.......+.|.| +.+.++||||+-.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg--~rinlidtpghvd 114 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG--HRINLIDTPGHVD 114 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc--ceEeeecCCCcce
Confidence 357889999999999999998651 111 23334555666666777777 7888999999999
Q ss_pred cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|+-....+++-.|+++.|||++..-....+-.|.+ ....++|-..++||+|...
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 99989999999999999999987655555555543 2234789999999999643
No 378
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=1.7e-06 Score=66.91 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+|.+|+|||||+|+|.+..... ....+..++.....+...+ ..++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 67999999999999999999864321 1111111222333344433 2588999985544
No 379
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.29 E-value=5.1e-06 Score=65.42 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=61.3
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
....+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+.. . ......+....+..++.+||
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~--~-~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPA--V-TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHH--H-HHHHHHHHHHcCCeEEEEEC
Confidence 45566789999999999876442221 111111 157999999999985321 0 11112222334568899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 027949 161 KTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~~ 181 (216)
+++.|++++.+.|.+.+.+..
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred CCcccHHHHHHHHHHHHHHhh
Confidence 999999999999988876543
No 380
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.26 E-value=7.7e-06 Score=65.47 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=80.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEE------------------EE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIR------------------TI 57 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~------------------~~ 57 (216)
..++|+|+|+..+|||||+-.|...+.+ ....+..+.+..-. .+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 4589999999999999999777653321 11111112111100 01
Q ss_pred EE-CCeEEEEEEEeCCCccccccccccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 58 EL-DGKRIKLQIWDTAGQERFRTITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 58 ~~-~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
.+ .+...-++++|..|++.|-...-.- -+--|.-.+++-++-.--... ++ .+.-......|+++|.+|+|+.+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmT-KE---HLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMT-KE---HLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceecc-HH---hhhhhhhhcCcEEEEEEeeccCc
Confidence 11 1222457788999998876532211 122355555555443211000 01 01111122689999999999865
Q ss_pred CCCccChHHHH---HHH--------------------------HHhCCeEEEEecCCCCCHHHHH
Q 027949 135 SKRAVPTSKGQ---ALA--------------------------DEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 135 ~~~~~~~~~~~---~~~--------------------------~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+. +..+..+ .+. .+.-+++|.+|-.+|++++-+.
T Consensus 288 AN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 288 AN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred HH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 32 1222221 111 1222789999999999987543
No 381
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.2e-06 Score=72.08 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=76.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+..=+|+++..-.-|||||...|...+-. .+...+.++.. ..+..-...+.++++|+||+-
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmks--s~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKS--SAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeec--cccccccCceEEEEecCCCcc
Confidence 445568999999999999999998764321 11122222222 222222233788999999999
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
.|.+......+-+|++++++|+...-.-....- +++....+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence 999888888888999999999876533222211 1211122567789999999
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=2e-06 Score=67.28 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=40.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
..+++|.+|+|||||+|+|.... +......+..++.....+.+.+.. .|+||||..++.-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 46899999999999999998732 223333444445556666664322 4679999866543
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.3e-06 Score=69.30 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC-ccccc-----eeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
++|+|++|+|||||||.|++..... ...+. ..++.....+...+.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999754321 11111 1122333444443322 5789999854
No 384
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=5.3e-06 Score=66.79 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=93.8
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCccccceeeeEEEEEEEEC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (216)
+...++++|+|.-.+||||+-..|+... ...+...+.+.+.....++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3556999999999999999877664400 011122222222333333333
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
...+++.|+||+..|-...-.-..++|+.++|+++-..+ .|+.--+ .-+.+......-...++++||+|-+...
T Consensus 156 --~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 --NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred --ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 367889999999887776666667889999998874322 1211101 1111112222245678889999954322
Q ss_pred Cc-----cChHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q 027949 137 RA-----VPTSKGQALADEYG------IKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 137 ~~-----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 171 (216)
.. ...+....|.+.+| ..++++|..+|.++.+...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 11233444555443 5789999999999887654
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.23 E-value=2.8e-06 Score=69.31 Aligned_cols=56 Identities=27% Similarity=0.362 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
.+++|+|.+|+|||||+|+|++... .....|+++ .....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999998542 223334444 3334444433 246899999653
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.4e-05 Score=62.64 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=66.7
Q ss_pred cccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
.+.+.-+.+.|-+++|+++.+|+ +...+..++-..... ++..+||+||+||.+...... ++........+.+++.
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLF 146 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEE
Confidence 34444555688899999998887 344455555444433 677888899999976433222 4566677788999999
Q ss_pred EecCCCCCHHHHHHHHHH
Q 027949 158 TSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~~l~~ 175 (216)
+|++++.|++++..++..
T Consensus 147 ~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 147 VSAKNGDGLEELAELLAG 164 (301)
T ss_pred ecCcCcccHHHHHHHhcC
Confidence 999999999998887653
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=8.5e-06 Score=64.52 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=61.3
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
....+..+|++++|+|+.++.+... .++..+. . +.|+++|+||+|+.+. . ..+....+....+..++.+||
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~--~-~~~~~~~~~~~~~~~vi~vSa 88 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADP--E-VTKKWIEYFEEQGIKALAINA 88 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCH--H-HHHHHHHHHHHcCCeEEEEEC
Confidence 4556678999999999977644221 1111111 1 5899999999998532 1 112222223344678899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~~ 180 (216)
.++.|++++.+.|.+.+.+.
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCcccHHHHHHHHHHHHHHH
Confidence 99999999999988877654
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.20 E-value=2.5e-06 Score=69.71 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+++|+|.+|||||||+|+|+.... .....|+++ .....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCcc
Confidence 4789999999999999999986431 122334444 33444444442 3689999974
No 389
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1e-06 Score=68.50 Aligned_cols=180 Identities=19% Similarity=0.196 Sum_probs=102.8
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeee--EEEEEEEE--------------------------
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGID--FKIRTIEL-------------------------- 59 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------------------- 59 (216)
.+.-.++|.-+|...-||||+++++.+-. |..+.....+.. +....++.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34566999999999999999999987721 111111111100 00000000
Q ss_pred ----CC---eEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027949 60 ----DG---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGN 128 (216)
Q Consensus 60 ----~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (216)
.+ --..+.++|.||++-.-....+-..-.|++++++..+. |++-+++. .+.-.. -..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa----aveiM~--LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA----AVEIMK--LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH----HHHHhh--hceEEEEec
Confidence 00 01356788999987533322222334577888877765 33333332 221111 246788899
Q ss_pred CCCCCCCCCccC-hHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCCCCCccccccCC
Q 027949 129 KADMDESKRAVP-TSKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQP 198 (216)
Q Consensus 129 K~Dl~~~~~~~~-~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 198 (216)
|+||..+..+.. .+.+..|... .+.+++++||.-.++++-+.++|+..+.---.+.. .+|....|.+-
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~--s~prlIVIRSF 259 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT--SPPRLIVIRSF 259 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC--CCCcEEEEEee
Confidence 999865443333 2445555543 34799999999999999999999988764333222 33444444433
No 390
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.2e-05 Score=65.96 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+-++|+|+||+||||||+.|...-.-...... ....++ ..+....++++++|.. ... .....+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTv-vsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITV-VSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEE-eecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence 34577899999999999999888653211100000 111111 2455578888999843 222 223345689999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCccChHHHH----HHHHH--hCCeEEEEecCC
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRAVPTSKGQ----ALADE--YGIKFFETSAKT 162 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~ 162 (216)
+++|.+-.-.++.+ .++..+.. ++.|- +-|+++.|+..... .....-+ .|..+ .|+.+|.+|...
T Consensus 139 LlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 139 LLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99998765333332 23333333 35555 44789999864221 1111111 22222 257888888764
No 391
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=7.9e-06 Score=74.67 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=65.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE-EEEEEECCeEEEEEEEeCCCccc--------cccccccc----
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGKRIKLQIWDTAGQER--------FRTITTAY---- 84 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~---- 84 (216)
-+|+|++|+||||++..--.+-.........+.... +...++- -.-..+++||.|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc-cccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 489999999999988654322111110000000000 1111110 012456789998321 12233333
Q ss_pred -----cccccEEEEEEeCCCH-----hH----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 85 -----YRGAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 85 -----~~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
.+-.|++|+.+|+.+- .. ...++..+.++.+...-..|++|++||.|+.+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2457999999998652 11 22344456777777777899999999999854
No 392
>PRK13695 putative NTPase; Provisional
Probab=98.15 E-value=5.5e-05 Score=55.36 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 118 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
..+.|++++.+|... ......+....+..++.+ +.++-+++.+.+++.+
T Consensus 124 ~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 124 DSEKPVIATLHRRSV--------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred hCCCeEEEEECchhh--------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 346899999988542 123334455556677776 4566678888877754
No 393
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.12 E-value=7e-05 Score=62.84 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=87.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------------------------
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------------------------------------- 42 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~------------------------------------------------- 42 (216)
.+...+|+|+|...+||||.+..+......+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4567899999999999999999886632110
Q ss_pred -----ccccceeeeEEEEEEEECCeE-EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCCHhHH
Q 027949 43 -----SFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF 103 (216)
Q Consensus 43 -----~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~ 103 (216)
....+.+....+..+++.|.. -..+++|.||.-. .-.+...+..+-+++|+|+--..-+..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 000011111222222333322 3567889999321 122445667788899998743222211
Q ss_pred -HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-----CeEEEEecCCC---CCHHHHHHH
Q 027949 104 -NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-----IKFFETSAKTN---LNVEEVFFS 172 (216)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~---~gi~~l~~~ 172 (216)
..+-.+ +.+.-+.+...|+|++|.|+.+ ....++..++.+....- ..||.+-.-.| ++|+++-.+
T Consensus 465 RSnVTDL---Vsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~Y 538 (980)
T KOG0447|consen 465 RSIVTDL---VSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREY 538 (980)
T ss_pred hhhHHHH---HHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHH
Confidence 122222 3334456888999999999965 34556666666554211 35665533222 345555444
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3.5e-05 Score=63.78 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=74.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeee------------------EEEEEEEE---------CCeEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGID------------------FKIRTIEL---------DGKRIK 65 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~------------------~~~~~~~~---------~~~~~~ 65 (216)
-.|+|+|++|+||||++..|.+..... ........+ ........ .-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 478999999999999999886531100 000000000 00000000 001246
Q ss_pred EEEEeCCCccccccc----ccccc--ccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 66 LQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
+.++||+|....... ...+. ...+-.++|+|++. ...+.++ +..+.. -..--+|+||.|-..
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAA---- 340 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCC----
Confidence 788999996542221 11111 12335678888874 4333333 222221 123367789999432
Q ss_pred cChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH
Q 027949 139 VPTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS 172 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~ 172 (216)
..-.+..++...+.++..+ .+|.++ +++...
T Consensus 341 -~~G~~l~~~~~~~lPi~yv--t~Gq~VP~Dl~~a 372 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYV--TNGQKVPEDLHEA 372 (420)
T ss_pred -CccHHHHHHHHhCCCEEEE--ECCCCchhhhhhC
Confidence 3345666777778777766 456666 555443
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.05 E-value=1.1e-05 Score=63.95 Aligned_cols=60 Identities=27% Similarity=0.243 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCcc-c-----cceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
-.++++|++|+|||||+|.|++....... . .+..+......+...+. ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999986543211 1 11112223333444321 2578999986543
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.02 E-value=0.00016 Score=58.00 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=48.8
Q ss_pred EEEEEEeCCCcccccc----c-ccccc---ccccEEEEEEeCCCHhHHHH-HHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 64 IKLQIWDTAGQERFRT----I-TTAYY---RGAMGILLVYDVTDESSFNN-IRN-WIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~-~~~~~---~~~d~~i~v~d~~~~~~~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
....++++.|...-.. + +...+ -..|+++-|+|+.+-..... ... ...++. ..=+||+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 4556778877432211 1 11111 23688999999876543222 222 222221 1228999999997
Q ss_pred CCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949 134 ESKRAVPTSKGQALADEYG--IKFFETSA 160 (216)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (216)
++. ..+..+...+.++ +.++.++.
T Consensus 159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAE---ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHH---HHHHHHHHHHHhCCCCeEEEccc
Confidence 633 2455555566555 67888776
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.8e-05 Score=62.56 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=71.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC--C-ccccceeeeEE------------------EEEEEE---------CCeEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT--T-SFITTIGIDFK------------------IRTIEL---------DGKRIK 65 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~--~-~~~~~~~~~~~------------------~~~~~~---------~~~~~~ 65 (216)
-.++|+|++|+||||++..|...-.. . ......+.+.+ ...+.. .-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 46789999999999999998753211 0 11111111111 111110 001257
Q ss_pred EEEEeCCCcccccccccc---cc---ccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCC
Q 027949 66 LQIWDTAGQERFRTITTA---YY---RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDESK 136 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~ 136 (216)
+.++||+|....+..... .+ ....-.++|++++. .+.+..+..-+......... ..+--+|+||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 889999996643332111 11 12334578888765 44444443333322211000 012357789999422
Q ss_pred CccChHHHHHHHHHhCCeEEEEe
Q 027949 137 RAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..+....+.++..++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 33456666777777666664
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=0.00038 Score=59.05 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeE------------------EEEEEEE---------CCeEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDF------------------KIRTIEL---------DGKRIK 65 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~------------------~~~~~~~---------~~~~~~ 65 (216)
-.|+|+|+.|+||||++..|...-.. .........+. ....... .-..+.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 46789999999999999888642100 00000000000 0011000 012368
Q ss_pred EEEEeCCCcccccccccc---ccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC
Q 027949 66 LQIWDTAGQERFRTITTA---YYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP 140 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 140 (216)
+.|+||+|.......... .+. .....++|++... ....+...+..+.. ..+.-+|+||.|... .
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~-----~ 499 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG-----R 499 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc-----c
Confidence 899999996533221110 010 1123566666653 22333333333332 235678999999422 3
Q ss_pred hHHHHHHHHHhCCeEEEEecCCCCCH-HHHH----HHHHHHHHHHhhccc
Q 027949 141 TSKGQALADEYGIKFFETSAKTNLNV-EEVF----FSIARDIKQRLADTD 185 (216)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~----~~l~~~i~~~~~~~~ 185 (216)
.-.+..+....+.++..++ +|..+ +++. ..|++.+.......+
T Consensus 500 lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~ 547 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAAD 547 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhcc
Confidence 3456666777777776664 45555 4443 235555555444333
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=66.71 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=41.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
.+.|.+||.|||||||+||.|.+... ..+.+|+.+ .+..++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT--KHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT--KHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc--ceeEEEEcCC---CceecCCCCc
Confidence 79999999999999999999999764 345556655 4444444444 5678999995
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=98.00 E-value=1.5e-05 Score=63.43 Aligned_cols=58 Identities=29% Similarity=0.322 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCc-ccc-----ceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-FIT-----TIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
.++|+|++|+|||||+|.|++...... ..+ +..+......+...+. ..++||||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 579999999999999999997653311 111 1112222333344432 367899998543
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.99 E-value=7.9e-05 Score=59.77 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-.+|.|.-|||||||+++++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34688999999999999999864
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=1.8e-05 Score=58.16 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=40.6
Q ss_pred EEEEEEeCCCccccccc--cccc---cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 64 IKLQIWDTAGQERFRTI--TTAY---YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
....|+++.|...-..+ .... .-..+.+|.|+|+.+-.........+...... .=++|+||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~~~-- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVSDE-- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCChh--
Confidence 46677788884433222 0000 12467899999997653333333322222222 228899999985422
Q ss_pred cChHHHHHHHHHhC
Q 027949 139 VPTSKGQALADEYG 152 (216)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (216)
...+..++..+..+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 22244555555443
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.97 E-value=3e-05 Score=65.15 Aligned_cols=149 Identities=14% Similarity=0.212 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--c-cccceeeeEE------------------EEEEEE---------CCeEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFK------------------IRTIEL---------DGKRIKL 66 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~--~-~~~~~~~~~~------------------~~~~~~---------~~~~~~~ 66 (216)
-++|+|++|+||||++..|...-... . .......+.+ ...... +-..+.+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~ 337 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHI 337 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCe
Confidence 58999999999999999987532110 0 0000000100 000000 0012457
Q ss_pred EEEeCCCccccccc---ccccccc---ccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 67 QIWDTAGQERFRTI---TTAYYRG---AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 67 ~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
.++||+|....... ....+.. -.-.++|+|++. ...+.++ ...+.. ...--+|+||.|-. .
T Consensus 338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i---~~~f~~----~~~~g~IlTKlDet-----~ 405 (484)
T PRK06995 338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV---VQAYRG----PGLAGCILTKLDEA-----A 405 (484)
T ss_pred EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH---HHHhcc----CCCCEEEEeCCCCc-----c
Confidence 78999995432211 1111111 122678888864 3333322 222221 12346678999942 2
Q ss_pred ChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH----HHHHHHH
Q 027949 140 PTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS----IARDIKQ 179 (216)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~----l~~~i~~ 179 (216)
..-.+..+....++++..+ .+|++| +++... +++.++.
T Consensus 406 ~~G~~l~i~~~~~lPI~yv--t~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYV--SNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred cchHHHHHHHHHCCCeEEE--ecCCCChhhhccCCHHHHHHHHhc
Confidence 3445667777888887776 467777 666433 4444444
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=7e-05 Score=53.32 Aligned_cols=58 Identities=24% Similarity=0.190 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
.+.+.|+||+|... ....++..+|-+|++...+-.+.+.-+ ...+...+ -++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~~-----~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIMEIA-----DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhhhc-----CEEEEeCCC
Confidence 36888999988642 223478889988888876522222111 11222222 288899987
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.93 E-value=5.3e-05 Score=55.35 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=45.0
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.++|++|...+... ...+. ...+.+++|+|...... ...+...+.+.. + ..-+|.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~--- 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA--- 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence 56788999997432111 11111 24788999999865432 223333333322 2 3567789999533
Q ss_pred ccChHHHHHHHHHhCCeEEE
Q 027949 138 AVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (216)
....+...+...++|+..
T Consensus 154 --~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 --RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --CcchhhhhHHHHCcCeEe
Confidence 122233366666666543
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.93 E-value=6.8e-06 Score=61.30 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=51.4
Q ss_pred EEEEEEeCCCccccccc----cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.++||+|....... ...++. ..+-+++|.+++.... .+... ..+.... .+--++++|.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~---~~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF---GIDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS---STCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc---cCceEEEEeecCCC---
Confidence 56889999996543321 111111 4567888999876542 22222 2222222 12356799999422
Q ss_pred ccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
..-.+..++...+.|+-.++ +|.+++++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT--TGQRVDDL 182 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE--SSSSTTGE
T ss_pred --CcccceeHHHHhCCCeEEEE--CCCChhcC
Confidence 33456677778888877774 44554443
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.91 E-value=0.00017 Score=58.85 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC--C-CccccceeeeEEEE------------------EEEE---------CCeEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIR------------------TIEL---------DGKRIK 65 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~--~-~~~~~~~~~~~~~~------------------~~~~---------~~~~~~ 65 (216)
=.|+++|+.|+||||.+-.|...-. . .......++|.+-. .+.. .-..+.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 4579999999999999988865433 1 11111122111111 0000 012357
Q ss_pred EEEEeCCCcccccccc----ccccccc--cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 66 LQIWDTAGQERFRTIT----TAYYRGA--MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~----~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
+.++||.|...++... ..++..+ .-+.+|++++... ..+...+..+.... .-=+++||.|-. .
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET-----~ 352 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDET-----T 352 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEccccc-----C
Confidence 8899999977655432 2222222 2345566665432 34444444443221 124668999932 2
Q ss_pred ChHHHHHHHHHhCCeEEEEe--cCCCCCHHHH-HHHHHHHHHHHhhcc
Q 027949 140 PTSKGQALADEYGIKFFETS--AKTNLNVEEV-FFSIARDIKQRLADT 184 (216)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l-~~~l~~~i~~~~~~~ 184 (216)
..-....+..+.+.|+..++ ..=+++|... -.||++.+.......
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~~ 400 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFANQ 400 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccccC
Confidence 34445555666665554443 2223333322 345666666544333
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=1.5e-05 Score=65.01 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=47.1
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+...+..+... ..--+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 57899999997542221 11222 1245678888875332 2223333333321 23367789999432
Q ss_pred ccChHHHHHHHHHhCCeEEEEe
Q 027949 138 AVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..++...+.|+..++
T Consensus 392 --k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 --SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --CccHHHHHHHHHCcCEEEEe
Confidence 23355666777777776664
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.87 E-value=2.4e-05 Score=65.18 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcccccccc----c--cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
..+.|+||+|........ . ......|.+++|+|++... ........+.... ...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 378999999975433211 0 1123578899999987643 2222233333221 12367789999532
Q ss_pred ccChHHHHHHHHHhCCeEEEEec
Q 027949 138 AVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..-.+..+....+.|+.+++.
T Consensus 247 --~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 --KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --cccHHHHHHHHHCcCEEEEec
Confidence 223455666677777766643
No 410
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.85 E-value=6.6e-05 Score=54.60 Aligned_cols=136 Identities=23% Similarity=0.314 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQ--------------------- 74 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 74 (216)
+|.+.|.+|+||||++++++..-.. ...+..+ +....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998754211 1112222 22223334444444455555 221
Q ss_pred -ccccccccccccc--ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCccChHHHHHHHHH
Q 027949 75 -ERFRTITTAYYRG--AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA-DMDESKRAVPTSKGQALADE 150 (216)
Q Consensus 75 -~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~~~ 150 (216)
+.+.......++. .+.=++|+|=-.+-.+ ....|...+......+.|++.++-+. +. ..+..+...
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~~~ 147 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIKRR 147 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHHhC
Confidence 1111111112221 1223667774333211 11123334444444568888888766 31 234455666
Q ss_pred hCCeEEEEecCCCCC
Q 027949 151 YGIKFFETSAKTNLN 165 (216)
Q Consensus 151 ~~~~~~~~Sa~~~~g 165 (216)
.++.++.++..+.+-
T Consensus 148 ~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 148 PDVKIFEVTEENRDA 162 (168)
T ss_dssp TTSEEEE--TTTCCC
T ss_pred CCcEEEEeChhHHhh
Confidence 678888887655443
No 411
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=4.3e-05 Score=58.90 Aligned_cols=63 Identities=24% Similarity=0.469 Sum_probs=48.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC----ccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
...+.++|+-+|..|.|||||+..|.+-.+.. +..++.........+.-.+..++++++||.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 34678999999999999999999999977653 3445555555555555577778999999998
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.0002 Score=59.70 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccccc----ccccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRT----ITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
+.+.|+||+|...... ....++. .-.-+++|++++-.. ..+...+..+... + +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 6789999999654321 1222222 223566777775432 2332322222211 1 2367899999422
Q ss_pred CccChHHHHHHHHHhCCeEEEEecCCCCCH-HHH
Q 027949 137 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EEV 169 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l 169 (216)
..-.+..+....++++..++ +|.++ +++
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl 400 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRVPDDI 400 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence 23357777888888877664 45554 444
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=5.4e-05 Score=66.75 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--Cc-cccceeeeEEE----------------EEEEE-----------CCeEEEE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFT--TS-FITTIGIDFKI----------------RTIEL-----------DGKRIKL 66 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~--~~-~~~~~~~~~~~----------------~~~~~-----------~~~~~~~ 66 (216)
-|+|+|++|+||||++..|...-.. .. .....+.+.+. ..+.. .-..+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 5799999999999999998753211 00 00000111000 00000 0112478
Q ss_pred EEEeCCCccccccccc----cc--cccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949 67 QIWDTAGQERFRTITT----AY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 67 ~i~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (216)
.|+||+|....+.... .. ...-+-.++|+|++. .+.+.++.. .+...... .+-=+|+||.|-..
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~-~i~glIlTKLDEt~----- 337 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGE-DVDGCIITKLDEAT----- 337 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccC-CCCEEEEeccCCCC-----
Confidence 8999999543222111 11 112345788888864 333443333 22221100 13367799999432
Q ss_pred ChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH----HHHHHHH
Q 027949 140 PTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS----IARDIKQ 179 (216)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~----l~~~i~~ 179 (216)
..-.+..+....++++..+ .+|++| +++... +++.++.
T Consensus 338 ~~G~iL~i~~~~~lPI~yi--t~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYV--STGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred CccHHHHHHHHHCCCeEEE--ecCCCChhhcccCCHHHHHHHHhc
Confidence 2345666777778877777 466777 666433 4444443
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.78 E-value=3.8e-05 Score=63.87 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=49.8
Q ss_pred EEEEEEeCCCcccccccccc----c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|....+...-. + .-..+.+++|+|+.... ........+.... ...-+|+||.|-..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence 57899999996433221111 1 12467789999987543 3333334443322 12366799999422
Q ss_pred ccChHHHHHHHHHhCCeEEEEec
Q 027949 138 AVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..-.+..+....++|+.++..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 122366777778887776654
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=5.2e-05 Score=63.07 Aligned_cols=86 Identities=19% Similarity=0.082 Sum_probs=48.3
Q ss_pred EEEEEEeCCCccccccccc----cc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITT----AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|....+...- .+ .-..+.+++|+|+.... .+......+.... ...-+|+||.|-..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~--- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA--- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence 6789999999643222110 01 11356779999986542 3333333343322 12356789999522
Q ss_pred ccChHHHHHHHHHhCCeEEEEec
Q 027949 138 AVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..-.+.......++|+.++..
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 112366667777887776654
No 416
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.001 Score=54.73 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=56.3
Q ss_pred EEEEEEeCCCccccccc----ccccccc--cc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI----TTAYYRG--AM-GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
+.+.++||+|....... ...++.. .+ -.++|+|++... ..+...+..+.. -.+--+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC--
Confidence 68899999996543321 1122221 12 478888987653 233333333321 123467889999432
Q ss_pred CccChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHH
Q 027949 137 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EEVFFSIARDIKQ 179 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~l~~~i~~ 179 (216)
..-.+..++...+.|+..+ .+|.++ +++...=.+.+.+
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yi--t~Gq~vPeDl~~~~~~~~~~ 365 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYV--TDGQIVPHNISIAEPLTFIK 365 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEE--eCCCCChhhhhhCCHHHHHH
Confidence 2334556677777777666 456666 5554443333333
No 417
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.68 E-value=0.00025 Score=57.50 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
.+|.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 688999999999999999864
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.67 E-value=9.3e-05 Score=57.93 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=38.6
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC------CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
....+.++|+|.||+|||||+|.+...... ....++.+..... .+.+... -.+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccC-CceEEecCCCc
Confidence 345589999999999999999998654322 2233444433222 1333322 24677899995
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.66 E-value=0.00021 Score=41.60 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=28.7
Q ss_pred cccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 87 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
-.++++|++|.+... +.+.-..++..+..... +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 367899999998754 45555567777877765 689999999998
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00032 Score=57.17 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcccccccc----ccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|........ ..+.. ..+.+++|.++.. ...++...+..+.. -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 688999999975433211 11111 2355666766532 22233333322211 123367799999432
Q ss_pred ccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 138 AVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
..-.+..++...+.|+..++ +|.++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 33456667778887777665 344443
No 421
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.55 E-value=0.00087 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67999999999999999999764
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00088 Score=55.39 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=68.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC-CC-Cccc--------------------cceeeeEEEEE-E-----EECCeEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS-FT-TSFI--------------------TTIGIDFKIRT-I-----ELDGKRIKLQ 67 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~-~~-~~~~--------------------~~~~~~~~~~~-~-----~~~~~~~~~~ 67 (216)
.-++|+|++||||||++..|.... .. .... ...+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 00 0000 00011110000 0 0011235778
Q ss_pred EEeCCCcccccc----ccccccc-----cccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 68 IWDTAGQERFRT----ITTAYYR-----GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 68 i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
++||+|...... .+..++. ..+-.++|+|++... ....+ ...+.. --+--+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~---~~~f~~----~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV---LKAYES----LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH---HHHhcC----CCCCEEEEEcccCCC---
Confidence 999999643221 1111111 123577888887543 33333 222211 123367789999422
Q ss_pred ccChHHHHHHHHHhCCeEEEEec
Q 027949 138 AVPTSKGQALADEYGIKFFETSA 160 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..-.+..++...+.|+..++.
T Consensus 374 --~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 --FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 223466667777777766643
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.53 E-value=0.00083 Score=43.50 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=42.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccccEEEEEEe
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (216)
+++.|..|+||||+...+...-... + .... -.+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~v~--~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------G--KRVL--LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------C--CeEE--EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998876532110 0 1111 111 5778899876432221 1345567888888887
Q ss_pred CCCH
Q 027949 97 VTDE 100 (216)
Q Consensus 97 ~~~~ 100 (216)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7644
No 424
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.52 E-value=8.6e-05 Score=59.89 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=43.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
-...+++.|+|.|++||||+||.|...... ....|+.+ .....+..+. .+.|.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence 355699999999999999999999887753 33344444 4455555554 6788999994
No 425
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.50 E-value=0.014 Score=42.14 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=91.6
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+......|+++|..+.++..|.+.+...+-. . ...+.... ..|=..+ ....-...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~-~l~Vh~a~--------sLPLp~e----~~~lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE----------F-KLKVHLAK--------SLPLPSE----NNNLRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc----------e-eEEEEEec--------cCCCccc----ccCCCceeEE
Confidence 3455789999999999999999999863211 1 11111111 0111111 1112345899
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
++|++|.....++..++.-+..+....-.++ +.++.+-.... ....+....+.+++..+.++++.+.-...++...+-
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 9999999999999999887777755443344 34444444432 235678899999999999999999877776665555
Q ss_pred HHHHHH
Q 027949 171 FSIARD 176 (216)
Q Consensus 171 ~~l~~~ 176 (216)
+.|++.
T Consensus 146 qRLL~~ 151 (176)
T PF11111_consen 146 QRLLRM 151 (176)
T ss_pred HHHHHH
Confidence 544443
No 426
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.47 E-value=0.0001 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00062 Score=53.27 Aligned_cols=133 Identities=18% Similarity=0.135 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-----------Ccc--------ccceeeeEEEEEEEE------------CCeEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-----------TSF--------ITTIGIDFKIRTIEL------------DGKRI 64 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-----------~~~--------~~~~~~~~~~~~~~~------------~~~~~ 64 (216)
-+++++|++|+||||++..+...-.. ... .......+....... ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999887552100 000 000000111111000 11136
Q ss_pred EEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 65 KLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
.+.|+||+|....... +..++ ...+-+++|+|++... ..+..++..+.. -.+--+++||.|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence 8899999997532221 11111 1345678899986322 222233333322 123467889999432
Q ss_pred cChHHHHHHHHHhCCeEEEEe
Q 027949 139 VPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23345566677777776664
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.0001 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
++|+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 429
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=9.1e-05 Score=53.95 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.=++|.|++|+||||++++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999876
No 430
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.00013 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.0022 Score=48.59 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=37.9
Q ss_pred EEEEEeC-CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 65 KLQIWDT-AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 65 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
.+.++|| +|.++ +-+...+.+|.+|+|+|.+.. ++...++.. .+.+... -.++.+|+||.|
T Consensus 135 e~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taeri~-~L~~elg-~k~i~~V~NKv~ 196 (255)
T COG3640 135 EVVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAERIK-ELAEELG-IKRIFVVLNKVD 196 (255)
T ss_pred cEEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHHHH-HHHHHhC-CceEEEEEeecc
Confidence 4555565 23433 334455679999999998743 444444433 3333332 378999999998
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.41 E-value=0.00084 Score=44.55 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 18 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
|.|.| ..|+||||+...+...-.. .. .....+..+.. +.+.++|+|+.... .....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~-------~~vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RG-------KRVLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CC-------CcEEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 5589999998776532211 11 11122222222 67889999986432 23356677999999887
Q ss_pred CCCHhHHHHHHHHHH
Q 027949 97 VTDESSFNNIRNWIR 111 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (216)
.+ ..++..+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 433
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.00026 Score=56.17 Aligned_cols=144 Identities=18% Similarity=0.167 Sum_probs=76.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC----CCCCcc-----------------ccc---------eeeeEEEEEEE---E-
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG----SFTTSF-----------------ITT---------IGIDFKIRTIE---L- 59 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~~~-----------------~~~---------~~~~~~~~~~~---~- 59 (216)
...-|+|+|-.|+||||.|-.|... ...... ... .+-+.....+. .
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 3578899999999999999887551 100000 000 01111100000 0
Q ss_pred CCeEEEEEEEeCCCcccccccccc-------ccccc-----cEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEE
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTA-------YYRGA-----MGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILV 126 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~-------~~~~~-----d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv 126 (216)
..+.+.+.|+||+|.-+....... .+... |=++++.|+.-.. ++.+++.+. .... ---++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~-eav~------l~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN-EAVG------LDGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH-HhcC------CceEE
Confidence 123478999999996443322111 11122 3377777987654 444543332 2211 12567
Q ss_pred EeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 127 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
++|.|-.. ..- .+..++..+++|+.++ --|+++++|..
T Consensus 291 lTKlDgtA-KGG----~il~I~~~l~~PI~fi--GvGE~~~DL~~ 328 (340)
T COG0552 291 LTKLDGTA-KGG----IILSIAYELGIPIKFI--GVGEGYDDLRP 328 (340)
T ss_pred EEecccCC-Ccc----eeeeHHHHhCCCEEEE--eCCCChhhccc
Confidence 89999532 221 2334567778888877 35777777743
No 434
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00087 Score=55.97 Aligned_cols=118 Identities=21% Similarity=0.223 Sum_probs=75.6
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEE--------------C
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIEL--------------D 60 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~ 60 (216)
+..+.=++-|+....-|||||...|..+.-. .+.....++......+.+ +
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 3445567788999999999999988542211 011111121111111111 3
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
+..+-++++|.||+-.|.+.....++-.|+.++|+|.-+.-..+.--.+.+.+.++ +..++++||.|.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence 44588999999999999999999999999999999987653333222233444443 444778999994
No 435
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00011 Score=59.12 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=28.7
Q ss_pred eEEEEEEEeCCCccccccc-cccc-----cccccEEEEEEeCCCHhHHHHHHH
Q 027949 62 KRIKLQIWDTAGQERFRTI-TTAY-----YRGAMGILLVYDVTDESSFNNIRN 108 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~-~~~~-----~~~~d~~i~v~d~~~~~~~~~~~~ 108 (216)
+.+.+.|+||+|....... .... .-.-|-+|+|.|++-.........
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 3489999999996542221 1111 113578999999987655444333
No 436
>PRK07261 topology modulation protein; Provisional
Probab=97.40 E-value=0.00014 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 437
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.00024 Score=58.26 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=46.0
Q ss_pred EEEEEEeCCCccccccccccc------cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITTAY------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|....+...-.. .-+-|=+++|+|+.-.+. +...-..+.+..+ -.=||++|.|-.. .
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A~~~A~aF~e~l~---itGvIlTKlDGda-R- 254 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---AVNTAKAFNEALG---ITGVILTKLDGDA-R- 254 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH---HHHHHHHHhhhcC---CceEEEEcccCCC-c-
Confidence 588999999975544322111 123567999999876543 3333333444322 1156789999521 1
Q ss_pred ccChHHHHHHHHHhCCeEEEEe
Q 027949 138 AVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
--.+.......+.|+.++.
T Consensus 255 ---GGaALS~~~~tg~PIkFiG 273 (451)
T COG0541 255 ---GGAALSARAITGKPIKFIG 273 (451)
T ss_pred ---chHHHhhHHHHCCCeEEEe
Confidence 1223344445565655553
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.37 E-value=0.00021 Score=42.63 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
..+|.|+.|+||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999988754
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00022 Score=53.21 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|++|||||||++++.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 579999999999999999987653
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.36 E-value=0.00015 Score=50.97 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|+++|++|||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.0012 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-.++|.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 442
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.34 E-value=0.003 Score=44.38 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=60.4
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 027949 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 19 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (216)
..-|..|+|||++--.+...-.. ......-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 35578899999997665432100 00000001100 0001111678999999753 333456778899999999876
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
..++......+..+.... ...++.+|+|+.+-
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 344455445555554432 24577899999873
No 443
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.34 E-value=0.0021 Score=54.96 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
=+++.|++|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999998764
No 444
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.30 E-value=0.00077 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
.+-++|+|+.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 36789999999999999998865
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00022 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~ 40 (216)
|+++|++|||||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999988553
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.26 E-value=0.0015 Score=43.64 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=56.4
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH
Q 027949 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 21 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (216)
=+..|+||||+...|...-.........-.+.... .. ..+.++|+|+... ......+..+|.++++++.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-h
Confidence 45678999998877643221110111111111111 01 1678999998643 23344667889999888765 4
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027949 101 SSFNNIRNWIRNIEQHASD-NVNKILVGNK 129 (216)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 129 (216)
.+...+..++..+.+.... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4566666666666654432 3466677775
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00034 Score=42.90 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999865
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.22 E-value=0.00036 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
-|+|+|++|||||||++.+.+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999999987553
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.22 E-value=0.00024 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.21 E-value=0.00028 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999998764
No 451
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0011 Score=50.72 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=81.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccc-----cccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTIT-----TAYYRG 87 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 87 (216)
....|++.|+.+ +||+|++.....-. ...++...++.+..-...+ ..--.++|+.+|......+. ..-++
T Consensus 44 ~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~- 119 (363)
T KOG3929|consen 44 FEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR- 119 (363)
T ss_pred ceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh-
Confidence 447789999765 49999998876533 2445556666555543333 22345789999865433221 11112
Q ss_pred ccEEEEEEeCCCHhH-HHHHHHHHHHHH--------------------------Hh-----------cCCCCcEEEEEeC
Q 027949 88 AMGILLVYDVTDESS-FNNIRNWIRNIE--------------------------QH-----------ASDNVNKILVGNK 129 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~--------------------------~~-----------~~~~~p~ivv~nK 129 (216)
.-.+|++.|+++++. |..++..++.+. .. .+...|+++|+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 234889999999754 233333322222 10 1125899999999
Q ss_pred CCCCCCCCccChHH-------HHHHHHHhCCeEEEEecC
Q 027949 130 ADMDESKRAVPTSK-------GQALADEYGIKFFETSAK 161 (216)
Q Consensus 130 ~Dl~~~~~~~~~~~-------~~~~~~~~~~~~~~~Sa~ 161 (216)
.|.... ...+. ++.++..+|..+...|++
T Consensus 200 YDvFq~---FesekRkH~C~~LRf~Ah~yGaaLlmfSsk 235 (363)
T KOG3929|consen 200 YDVFQD---FESEKRKHICKTLRFVAHYYGAALLMFSSK 235 (363)
T ss_pred hhhhcc---ccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 997532 33333 344445566666666654
No 452
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.13 E-value=0.0019 Score=47.12 Aligned_cols=44 Identities=27% Similarity=0.178 Sum_probs=27.3
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987643211 11222211 1122589999999999854
No 453
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.00036 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.=|+|+|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998754
No 454
>PRK06217 hypothetical protein; Validated
Probab=97.12 E-value=0.00047 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 455
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.09 E-value=0.0042 Score=45.52 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS 142 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (216)
.+.+.++|+|+... ......+..+|.+++++..+.. +...+..++..+... +.|+.+|+|+.|... ....
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~ 161 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE 161 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence 47889999996532 2234456789999999987733 555566666555543 567889999999532 2345
Q ss_pred HHHHHHHHhCCeEEE
Q 027949 143 KGQALADEYGIKFFE 157 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (216)
+.++++...+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 667778878877653
No 456
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.07 E-value=0.012 Score=42.90 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=49.5
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027949 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 144 (216)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..++..+.... .....+|+|+.+-.. ....+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV 135 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence 6889999875332 23444678999999887764 34455555555554421 245678899998422 1222223
Q ss_pred HHHHHHhCCeEE
Q 027949 145 QALADEYGIKFF 156 (216)
Q Consensus 145 ~~~~~~~~~~~~ 156 (216)
..+...++.+++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 444555566554
No 457
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.07 E-value=0.00051 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 458
>PRK03839 putative kinase; Provisional
Probab=97.07 E-value=0.00049 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
+|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.06 E-value=0.0022 Score=47.97 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~ 39 (216)
|+|+|++||||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=97.06 E-value=0.0006 Score=55.69 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
+++|+|.+|+|||||++.|++...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 789999999999999999997543
No 461
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.06 E-value=0.00055 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|++|+|||||+|-+.+=..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 579999999999999999987443
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.05 E-value=0.00052 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 463
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.04 E-value=0.0036 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
..++++|++|-|||++++++.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCC
Confidence 5789999999999999999997553
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.00065 Score=46.92 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT 41 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~ 41 (216)
-.++|+|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999876544
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.02 E-value=0.00056 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998765
No 466
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.02 E-value=0.00055 Score=52.92 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++++|+.|||||||++++.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999873
No 467
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.01 E-value=0.001 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=22.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
....-|+|+|++|||||||++.|....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 344668899999999999999997643
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.01 E-value=0.00063 Score=47.77 Aligned_cols=21 Identities=52% Similarity=0.775 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0007 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~ 40 (216)
++++|++|||||||++.+.+-+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999998553
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.01 E-value=0.0022 Score=44.60 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.00067 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 027949 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~ 36 (216)
-.++|+|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 367999999999999999886
No 472
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.00 E-value=0.00091 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..-|+|+|++|||||||++.|.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999864
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.99 E-value=0.00066 Score=45.29 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027949 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~ 36 (216)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999986
No 474
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.98 E-value=0.00069 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.|+|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 475
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.98 E-value=0.00092 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..-+.|+|.+|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 356899999999999999999865
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.97 E-value=0.00065 Score=46.63 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 477
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.96 E-value=0.00029 Score=57.00 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
....+-|.++|.|++||||+||+|....+. ...|..+.......++.-. .+-++|+||
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHHh---ceeEecCCC
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0007 Score=52.14 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-+.|+|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999998
No 479
>PRK14530 adenylate kinase; Provisional
Probab=96.94 E-value=0.00077 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.93 E-value=0.0008 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999764
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.91 E-value=0.00081 Score=49.32 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-|+|+|++||||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998753
No 482
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.90 E-value=0.0009 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.90 E-value=0.00089 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 484
>PRK13949 shikimate kinase; Provisional
Probab=96.89 E-value=0.00093 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 485
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.89 E-value=0.00094 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-.++|+|++|+|||||++.+++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998653
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.88 E-value=0.00085 Score=50.10 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
|.|.|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.00087 Score=50.76 Aligned_cols=21 Identities=43% Similarity=0.649 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999987
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.88 E-value=0.00095 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999754
No 489
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.00096 Score=51.21 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999754
No 490
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.86 E-value=0.001 Score=49.32 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 491
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.86 E-value=0.001 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 492
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.86 E-value=0.001 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 493
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.85 E-value=0.00094 Score=49.22 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 494
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0009 Score=50.01 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~ 39 (216)
.+++|++|||||||++.|-.-.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 5899999999999999986543
No 495
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.85 E-value=0.0011 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999754
No 496
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0011 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 497
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.84 E-value=0.00041 Score=60.73 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=44.7
Q ss_pred EEEEEEeCCCcc-------------ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949 64 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130 (216)
Q Consensus 64 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (216)
..++++|+||.. ....+...++..-+.+|+.+...+-+ .....++....+..+.+...+-|++|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 467788999832 24456677777778888877765421 122235556666666677778888888
Q ss_pred CCCC
Q 027949 131 DMDE 134 (216)
Q Consensus 131 Dl~~ 134 (216)
|+.+
T Consensus 210 Dlmd 213 (657)
T KOG0446|consen 210 DFMD 213 (657)
T ss_pred Hhhh
Confidence 8754
No 498
>PRK14531 adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.+|+++|+|||||||+.+.|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998653
No 499
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999753
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999753
Done!