Query 027949
Match_columns 216
No_of_seqs 149 out of 1806
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-41 4.5E-46 256.6 18.8 169 13-182 11-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-36 5.6E-41 227.3 24.1 173 11-184 4-176 (206)
3 2bov_A RAla, RAS-related prote 100.0 3.9E-36 1.3E-40 225.0 22.3 195 12-216 11-206 (206)
4 1vg8_A RAS-related protein RAB 100.0 1.3E-35 4.5E-40 222.3 19.6 172 12-185 5-181 (207)
5 3cpj_B GTP-binding protein YPT 100.0 2.8E-35 9.7E-40 223.4 20.3 173 12-185 10-182 (223)
6 2fu5_C RAS-related protein RAB 100.0 7E-35 2.4E-39 214.3 20.7 174 11-185 4-177 (183)
7 2gf9_A RAS-related protein RAB 100.0 3.7E-34 1.3E-38 211.7 24.2 175 7-182 14-188 (189)
8 2a5j_A RAS-related protein RAB 100.0 3.2E-34 1.1E-38 212.5 23.6 176 7-183 13-188 (191)
9 3tkl_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 211.9 23.4 176 9-185 10-185 (196)
10 2bme_A RAB4A, RAS-related prot 100.0 5.2E-34 1.8E-38 210.1 22.6 178 7-185 2-179 (186)
11 2hup_A RAS-related protein RAB 100.0 1.9E-34 6.5E-39 215.5 20.5 174 7-181 21-195 (201)
12 2ew1_A RAS-related protein RAB 100.0 4.8E-34 1.6E-38 213.4 22.3 174 9-183 20-193 (201)
13 2oil_A CATX-8, RAS-related pro 100.0 6E-34 2E-38 211.2 22.4 176 7-183 17-192 (193)
14 3tw8_B RAS-related protein RAB 100.0 1.1E-33 3.8E-38 207.1 23.3 174 10-185 4-177 (181)
15 1zbd_A Rabphilin-3A; G protein 100.0 3.3E-33 1.1E-37 208.8 23.6 173 11-184 4-176 (203)
16 3dz8_A RAS-related protein RAB 100.0 1.1E-34 3.6E-39 215.1 14.2 174 8-182 16-189 (191)
17 1z08_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 204.5 20.0 167 12-179 3-169 (170)
18 1g16_A RAS-related protein SEC 100.0 1.7E-33 5.9E-38 204.1 20.1 166 14-181 2-167 (170)
19 2o52_A RAS-related protein RAB 100.0 2E-33 6.7E-38 209.8 20.9 175 10-185 20-194 (200)
20 2il1_A RAB12; G-protein, GDP, 100.0 1.1E-33 3.8E-38 209.8 18.8 173 7-180 18-191 (192)
21 1z0f_A RAB14, member RAS oncog 100.0 3.1E-33 1.1E-37 204.4 20.9 169 10-179 10-178 (179)
22 2efe_B Small GTP-binding prote 100.0 4.8E-33 1.6E-37 204.0 21.2 168 12-180 9-176 (181)
23 2g6b_A RAS-related protein RAB 100.0 9.5E-33 3.3E-37 202.2 22.8 169 11-180 6-175 (180)
24 1ky3_A GTP-binding protein YPT 100.0 3.6E-33 1.2E-37 204.6 19.8 170 12-181 5-180 (182)
25 2fg5_A RAB-22B, RAS-related pr 100.0 2.2E-33 7.4E-38 208.2 18.7 172 7-179 15-186 (192)
26 2fn4_A P23, RAS-related protei 100.0 1.1E-32 3.6E-37 201.9 22.0 170 12-183 6-176 (181)
27 2f7s_A C25KG, RAS-related prot 100.0 2.2E-33 7.4E-38 211.9 18.4 177 8-185 18-205 (217)
28 4dsu_A GTPase KRAS, isoform 2B 100.0 1.6E-32 5.4E-37 202.4 22.6 169 14-185 3-172 (189)
29 3ihw_A Centg3; RAS, centaurin, 100.0 1.4E-32 4.8E-37 202.7 22.1 168 8-182 13-183 (184)
30 1ek0_A Protein (GTP-binding pr 100.0 7.7E-33 2.6E-37 200.6 20.4 163 15-177 3-167 (170)
31 2gf0_A GTP-binding protein DI- 100.0 1.7E-33 5.7E-38 209.5 17.1 165 13-180 6-172 (199)
32 1r2q_A RAS-related protein RAB 100.0 8.9E-33 3.1E-37 200.2 20.3 164 13-177 4-167 (170)
33 1z2a_A RAS-related protein RAB 100.0 7.2E-33 2.5E-37 200.5 19.6 165 13-179 3-167 (168)
34 3bc1_A RAS-related protein RAB 100.0 1.9E-32 6.5E-37 202.7 21.9 173 11-184 7-190 (195)
35 1z0j_A RAB-22, RAS-related pro 100.0 2.1E-32 7.3E-37 198.3 21.8 164 13-177 4-167 (170)
36 2p5s_A RAS and EF-hand domain 100.0 2.2E-33 7.4E-38 209.4 16.9 170 10-179 23-197 (199)
37 3t5g_A GTP-binding protein RHE 100.0 1.6E-32 5.6E-37 201.3 21.3 168 13-182 4-172 (181)
38 3kkq_A RAS-related protein M-R 100.0 3.1E-32 1E-36 200.2 22.6 167 11-179 14-182 (183)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.5E-32 8.5E-37 199.5 21.5 167 12-180 4-175 (177)
40 3cph_A RAS-related protein SEC 100.0 3.4E-32 1.2E-36 204.6 22.7 172 11-184 16-187 (213)
41 2j0v_A RAC-like GTP-binding pr 100.0 6.5E-33 2.2E-37 208.6 18.4 168 13-182 7-183 (212)
42 2y8e_A RAB-protein 6, GH09086P 100.0 1.2E-32 4.2E-37 201.2 19.3 166 13-179 12-177 (179)
43 1z06_A RAS-related protein RAB 100.0 1.4E-32 4.9E-37 203.2 19.5 169 10-179 15-188 (189)
44 3q3j_B RHO-related GTP-binding 100.0 1.1E-32 3.9E-37 207.8 19.4 172 10-183 22-207 (214)
45 1x3s_A RAS-related protein RAB 100.0 3.4E-32 1.2E-36 201.7 21.2 172 9-182 9-181 (195)
46 3q85_A GTP-binding protein REM 100.0 2.5E-32 8.6E-37 198.0 19.9 165 15-180 2-168 (169)
47 2hxs_A RAB-26, RAS-related pro 100.0 8.3E-33 2.9E-37 202.2 17.3 167 13-180 4-174 (178)
48 2q3h_A RAS homolog gene family 100.0 5.5E-32 1.9E-36 201.8 22.0 172 10-183 15-199 (201)
49 2nzj_A GTP-binding protein REM 100.0 5.6E-32 1.9E-36 197.1 21.4 168 14-183 3-173 (175)
50 3reg_A RHO-like small GTPase; 100.0 5.2E-32 1.8E-36 201.0 21.6 169 10-180 18-189 (194)
51 3c5c_A RAS-like protein 12; GD 100.0 2.2E-32 7.6E-37 202.0 19.3 167 10-179 16-186 (187)
52 3cbq_A GTP-binding protein REM 100.0 1.8E-32 6.2E-37 203.9 18.7 169 11-180 19-189 (195)
53 3clv_A RAB5 protein, putative; 100.0 1.3E-31 4.5E-36 199.7 22.8 165 13-181 5-206 (208)
54 3oes_A GTPase rhebl1; small GT 100.0 2.1E-32 7.2E-37 204.3 18.4 171 10-182 19-190 (201)
55 1gwn_A RHO-related GTP-binding 100.0 3.3E-32 1.1E-36 204.0 19.2 171 7-179 20-204 (205)
56 3con_A GTPase NRAS; structural 100.0 3.3E-31 1.1E-35 195.8 23.2 170 10-182 16-186 (190)
57 2a9k_A RAS-related protein RAL 100.0 1.4E-31 4.8E-36 196.9 21.0 169 12-182 15-184 (187)
58 2yc2_C IFT27, small RAB-relate 100.0 1.1E-32 3.8E-37 206.3 14.9 171 13-183 18-196 (208)
59 2atx_A Small GTP binding prote 100.0 2E-31 6.8E-36 197.7 21.5 165 12-178 15-192 (194)
60 2iwr_A Centaurin gamma 1; ANK 100.0 2.2E-31 7.6E-36 194.7 21.1 164 14-184 6-174 (178)
61 1u8z_A RAS-related protein RAL 100.0 1.4E-31 4.8E-36 193.4 19.7 163 15-179 4-167 (168)
62 3q72_A GTP-binding protein RAD 100.0 2.3E-31 7.9E-36 192.3 20.0 163 15-180 2-165 (166)
63 2g3y_A GTP-binding protein GEM 100.0 3E-31 1E-35 199.4 20.8 171 10-181 32-205 (211)
64 2gco_A H9, RHO-related GTP-bin 100.0 5.6E-31 1.9E-35 196.6 21.9 167 11-179 21-200 (201)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 1.7E-31 5.7E-36 196.7 18.7 166 12-179 4-183 (184)
66 1kao_A RAP2A; GTP-binding prot 100.0 2.6E-31 9E-36 191.8 19.3 163 15-179 3-166 (167)
67 3l0i_B RAS-related protein RAB 100.0 4.2E-34 1.4E-38 213.2 4.6 169 10-179 28-196 (199)
68 2atv_A RERG, RAS-like estrogen 100.0 3.5E-31 1.2E-35 196.9 20.4 166 13-181 26-193 (196)
69 1c1y_A RAS-related protein RAP 100.0 3.2E-31 1.1E-35 191.6 19.5 162 15-178 3-166 (167)
70 2j1l_A RHO-related GTP-binding 100.0 3E-31 1E-35 200.0 19.9 167 13-181 32-211 (214)
71 4djt_A GTP-binding nuclear pro 100.0 9.2E-32 3.1E-36 203.1 16.9 173 12-185 8-181 (218)
72 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.9E-31 1.3E-35 194.5 19.2 164 14-179 4-180 (186)
73 4bas_A ADP-ribosylation factor 100.0 5.2E-31 1.8E-35 196.0 18.4 171 8-182 10-192 (199)
74 2ce2_X GTPase HRAS; signaling 100.0 2.3E-30 7.8E-35 186.5 21.0 162 15-179 3-165 (166)
75 2fv8_A H6, RHO-related GTP-bin 100.0 1.3E-30 4.4E-35 195.5 19.9 166 13-180 23-201 (207)
76 3t1o_A Gliding protein MGLA; G 100.0 2.2E-31 7.4E-36 197.6 15.2 169 11-183 10-196 (198)
77 3gj0_A GTP-binding nuclear pro 100.0 1.7E-31 5.9E-36 202.1 14.1 170 10-183 10-179 (221)
78 2erx_A GTP-binding protein DI- 100.0 1.4E-30 4.7E-35 189.0 17.9 162 15-178 3-166 (172)
79 2cjw_A GTP-binding protein GEM 100.0 8E-30 2.7E-34 189.1 21.4 167 13-181 4-174 (192)
80 3bwd_D RAC-like GTP-binding pr 100.0 3.3E-31 1.1E-35 194.3 13.3 163 14-178 7-180 (182)
81 4gzl_A RAS-related C3 botulinu 100.0 2.3E-30 7.8E-35 193.8 17.2 164 12-177 27-203 (204)
82 2h57_A ADP-ribosylation factor 100.0 6.7E-30 2.3E-34 188.9 17.9 164 9-179 15-187 (190)
83 2f9l_A RAB11B, member RAS onco 100.0 7E-29 2.4E-33 184.9 23.1 169 13-182 3-171 (199)
84 1zd9_A ADP-ribosylation factor 100.0 8.7E-31 3E-35 193.5 12.1 165 9-180 16-186 (188)
85 1upt_A ARL1, ADP-ribosylation 100.0 8E-30 2.8E-34 185.0 15.3 158 14-179 6-169 (171)
86 2h17_A ADP-ribosylation factor 100.0 1.1E-29 3.7E-34 186.5 14.3 159 10-176 16-180 (181)
87 1oix_A RAS-related protein RAB 100.0 2.7E-28 9.3E-33 180.7 21.5 168 9-177 23-190 (191)
88 1ksh_A ARF-like protein 2; sma 100.0 7.9E-29 2.7E-33 182.4 18.3 160 13-180 16-181 (186)
89 1zj6_A ADP-ribosylation factor 100.0 7.5E-30 2.6E-34 188.2 12.7 160 13-180 14-179 (187)
90 1r8s_A ADP-ribosylation factor 100.0 3.5E-30 1.2E-34 185.7 10.6 156 16-179 1-162 (164)
91 1f6b_A SAR1; gtpases, N-termin 100.0 3E-29 1E-33 186.8 15.4 155 14-176 24-196 (198)
92 1m2o_B GTP-binding protein SAR 100.0 8.8E-29 3E-33 183.2 17.0 155 14-176 22-189 (190)
93 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-29 7.3E-34 184.9 12.7 161 13-181 16-182 (183)
94 1fzq_A ADP-ribosylation factor 100.0 2.4E-29 8.3E-34 184.8 13.0 160 13-180 14-179 (181)
95 2b6h_A ADP-ribosylation factor 100.0 8.8E-30 3E-34 188.9 10.6 159 12-178 26-190 (192)
96 3llu_A RAS-related GTP-binding 100.0 1.6E-29 5.4E-34 188.0 11.2 169 6-177 11-195 (196)
97 2wkq_A NPH1-1, RAS-related C3 100.0 9.3E-28 3.2E-32 191.9 21.0 164 14-179 154-330 (332)
98 2x77_A ADP-ribosylation factor 100.0 3.4E-29 1.2E-33 184.9 11.7 160 13-180 20-185 (189)
99 3th5_A RAS-related C3 botulinu 99.9 5.9E-31 2E-35 196.8 0.0 163 13-177 28-203 (204)
100 2zej_A Dardarin, leucine-rich 100.0 5.4E-29 1.8E-33 183.3 9.2 164 15-180 2-179 (184)
101 2lkc_A Translation initiation 100.0 1.7E-27 5.8E-32 173.8 14.8 159 13-181 6-173 (178)
102 2wji_A Ferrous iron transport 100.0 1.9E-27 6.4E-32 172.1 14.3 153 15-177 3-163 (165)
103 3c5h_A Glucocorticoid receptor 100.0 1.6E-28 5.5E-33 189.8 9.1 169 7-178 11-254 (255)
104 2fh5_B SR-beta, signal recogni 99.9 8.2E-28 2.8E-32 180.9 11.1 161 13-176 5-213 (214)
105 2qu8_A Putative nucleolar GTP- 99.9 1E-26 3.4E-31 176.8 17.1 167 13-183 27-209 (228)
106 3o47_A ADP-ribosylation factor 99.9 9.7E-28 3.3E-32 191.7 10.5 159 13-179 163-327 (329)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 2.6E-26 9E-31 181.9 14.5 163 15-179 3-181 (307)
108 2wjg_A FEOB, ferrous iron tran 99.9 2.8E-26 9.6E-31 169.0 13.1 158 14-181 6-171 (188)
109 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-25 4.5E-30 188.8 18.8 163 12-182 319-487 (497)
110 2gj8_A MNME, tRNA modification 99.9 1.4E-26 4.8E-31 168.7 11.1 154 15-179 4-166 (172)
111 2cxx_A Probable GTP-binding pr 99.9 9E-27 3.1E-31 171.7 10.1 157 16-182 2-187 (190)
112 3a1s_A Iron(II) transport prot 99.9 7.7E-26 2.6E-30 174.9 15.7 155 14-178 4-166 (258)
113 2dyk_A GTP-binding protein; GT 99.9 2.5E-26 8.6E-31 164.9 11.3 150 16-177 2-160 (161)
114 1svi_A GTP-binding protein YSX 99.9 2.6E-26 8.8E-31 170.1 10.5 159 12-177 20-193 (195)
115 3iby_A Ferrous iron transport 99.9 3.3E-26 1.1E-30 176.7 10.0 151 16-176 2-164 (256)
116 3pqc_A Probable GTP-binding pr 99.9 1E-25 3.4E-30 166.7 11.5 159 11-179 19-194 (195)
117 3iev_A GTP-binding protein ERA 99.9 1.2E-24 4.1E-29 172.3 17.2 160 13-178 8-181 (308)
118 3b1v_A Ferrous iron uptake tra 99.9 8.7E-26 3E-30 175.6 9.4 153 14-177 2-162 (272)
119 3i8s_A Ferrous iron transport 99.9 7.8E-26 2.7E-30 176.4 9.0 154 15-178 3-168 (274)
120 3r7w_B Gtpase2, GTP-binding pr 99.9 1.7E-26 5.8E-31 182.0 4.6 160 17-183 1-178 (331)
121 3k53_A Ferrous iron transport 99.9 7.5E-25 2.6E-29 170.7 13.2 157 15-180 3-167 (271)
122 3dpu_A RAB family protein; roc 99.9 1.2E-25 4E-30 190.6 8.2 165 12-181 38-210 (535)
123 4dhe_A Probable GTP-binding pr 99.9 1.4E-24 4.7E-29 164.2 9.4 164 12-180 26-212 (223)
124 2e87_A Hypothetical protein PH 99.9 3.8E-23 1.3E-27 167.0 17.0 163 13-181 165-338 (357)
125 3gee_A MNME, tRNA modification 99.9 1.6E-23 5.6E-28 174.2 15.0 156 15-178 233-397 (476)
126 2hjg_A GTP-binding protein ENG 99.9 7.7E-24 2.6E-28 175.2 11.9 162 13-181 173-351 (436)
127 1wf3_A GTP-binding protein; GT 99.9 2.8E-23 9.7E-28 163.8 12.1 154 14-177 6-171 (301)
128 4dcu_A GTP-binding protein ENG 99.9 3.3E-23 1.1E-27 172.3 12.3 164 12-182 192-372 (456)
129 1lnz_A SPO0B-associated GTP-bi 99.9 9.9E-24 3.4E-28 168.7 7.7 158 16-179 159-330 (342)
130 1nrj_B SR-beta, signal recogni 99.9 5.2E-24 1.8E-28 160.5 5.5 143 13-165 10-170 (218)
131 1xzp_A Probable tRNA modificat 99.9 5.3E-23 1.8E-27 171.2 11.9 153 16-180 244-406 (482)
132 1cip_A Protein (guanine nucleo 99.9 1.3E-22 4.4E-27 162.8 13.0 128 52-181 183-346 (353)
133 2qtf_A Protein HFLX, GTP-bindi 99.9 5.7E-22 1.9E-26 160.0 16.5 161 17-180 181-355 (364)
134 3qq5_A Small GTP-binding prote 99.9 8.8E-24 3E-28 173.2 6.0 160 11-180 30-197 (423)
135 1wb1_A Translation elongation 99.9 1.6E-22 5.3E-27 169.0 13.5 158 12-178 16-188 (482)
136 1mky_A Probable GTP-binding pr 99.9 2.3E-22 7.9E-27 166.5 13.0 152 16-180 2-167 (439)
137 3sjy_A Translation initiation 99.9 2.8E-21 9.7E-26 158.4 16.8 164 12-178 5-191 (403)
138 3geh_A MNME, tRNA modification 99.9 1.9E-22 6.6E-27 167.2 9.8 152 15-179 224-384 (462)
139 1zcb_A G alpha I/13; GTP-bindi 99.9 1.1E-21 3.8E-26 157.9 13.4 127 54-182 193-356 (362)
140 3lxw_A GTPase IMAP family memb 99.9 2E-21 7E-26 149.2 14.3 167 12-180 18-209 (247)
141 2xtp_A GTPase IMAP family memb 99.9 9.8E-22 3.4E-26 152.1 12.5 163 13-180 20-209 (260)
142 3j2k_7 ERF3, eukaryotic polype 99.9 1.3E-21 4.5E-26 161.8 13.6 156 11-171 13-217 (439)
143 3ohm_A Guanine nucleotide-bind 99.9 1.5E-21 5E-26 154.6 13.3 128 52-181 157-320 (327)
144 2hjg_A GTP-binding protein ENG 99.9 9.6E-23 3.3E-27 168.7 6.7 152 16-179 4-165 (436)
145 1s0u_A EIF-2-gamma, translatio 99.9 3.8E-21 1.3E-25 157.9 15.6 160 13-178 6-197 (408)
146 3lxx_A GTPase IMAP family memb 99.9 9.5E-21 3.2E-25 144.8 16.8 165 11-179 25-214 (239)
147 2xtz_A Guanine nucleotide-bind 99.9 1E-21 3.5E-26 157.6 11.7 120 62-181 181-347 (354)
148 1ega_A Protein (GTP-binding pr 99.9 2.8E-21 9.6E-26 152.5 14.0 156 15-178 8-174 (301)
149 3cb4_D GTP-binding protein LEP 99.9 2.3E-21 8E-26 164.9 14.3 158 14-178 3-181 (599)
150 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-22 6E-27 157.5 6.2 162 12-177 5-202 (274)
151 1mky_A Probable GTP-binding pr 99.9 7E-21 2.4E-25 157.7 16.1 161 13-180 178-356 (439)
152 1kk1_A EIF2gamma; initiation o 99.9 3.1E-21 1.1E-25 158.5 13.8 162 11-178 6-199 (410)
153 2ywe_A GTP-binding protein LEP 99.9 4.4E-21 1.5E-25 163.0 14.3 159 13-178 4-183 (600)
154 3izy_P Translation initiation 99.9 3.2E-23 1.1E-27 174.0 -0.7 158 15-178 4-167 (537)
155 1zun_B Sulfate adenylate trans 99.8 4.6E-21 1.6E-25 158.5 10.4 155 12-171 21-216 (434)
156 4dcu_A GTP-binding protein ENG 99.8 4.5E-22 1.6E-26 165.5 3.8 156 11-178 19-184 (456)
157 4fid_A G protein alpha subunit 99.8 4.3E-20 1.5E-24 146.8 14.6 125 53-179 152-328 (340)
158 3p26_A Elongation factor 1 alp 99.8 1.9E-20 6.5E-25 156.7 13.3 153 13-169 31-228 (483)
159 1azs_C GS-alpha; complex (lyas 99.8 4.7E-20 1.6E-24 149.6 14.2 127 55-183 210-389 (402)
160 3tr5_A RF-3, peptide chain rel 99.8 2.5E-20 8.4E-25 156.9 12.3 116 13-134 11-148 (528)
161 2ged_A SR-beta, signal recogni 99.8 8.9E-21 3E-25 140.0 8.5 113 13-134 46-170 (193)
162 2qag_A Septin-2, protein NEDD5 99.8 2.1E-21 7.1E-26 156.8 5.2 163 13-182 35-236 (361)
163 1jny_A EF-1-alpha, elongation 99.8 4.5E-21 1.5E-25 158.6 6.8 153 14-171 5-205 (435)
164 1g7s_A Translation initiation 99.8 8E-20 2.7E-24 155.6 14.3 160 15-181 5-220 (594)
165 2c78_A Elongation factor TU-A; 99.8 1.6E-20 5.5E-25 154.0 9.5 147 13-165 9-180 (405)
166 1d2e_A Elongation factor TU (E 99.8 3.5E-20 1.2E-24 151.6 11.4 157 15-177 3-193 (397)
167 1zo1_I IF2, translation initia 99.8 5.3E-22 1.8E-26 165.3 -0.6 152 15-175 4-163 (501)
168 2elf_A Protein translation elo 99.8 3E-20 1E-24 150.3 9.6 147 17-180 23-181 (370)
169 1r5b_A Eukaryotic peptide chai 99.8 5.7E-21 1.9E-25 159.1 4.8 157 12-170 40-243 (467)
170 1f60_A Elongation factor EEF1A 99.8 7.6E-21 2.6E-25 158.0 4.5 151 14-169 6-202 (458)
171 1pui_A ENGB, probable GTP-bind 99.8 1E-19 3.5E-24 136.1 9.7 158 12-178 23-198 (210)
172 3izq_1 HBS1P, elongation facto 99.8 5.1E-20 1.7E-24 157.6 7.9 153 13-169 165-362 (611)
173 3mca_A HBS1, elongation factor 99.8 3.1E-20 1.1E-24 158.4 5.8 151 12-167 174-371 (592)
174 2aka_B Dynamin-1; fusion prote 99.8 5.9E-20 2E-24 144.7 5.7 160 13-177 24-251 (299)
175 3avx_A Elongation factor TS, e 99.8 5E-19 1.7E-23 157.7 10.8 160 12-177 293-484 (1289)
176 1udx_A The GTP-binding protein 99.8 1.1E-18 3.9E-23 142.5 12.0 161 17-182 159-328 (416)
177 3def_A T7I23.11 protein; chlor 99.8 3.4E-18 1.2E-22 132.3 14.1 119 14-134 35-165 (262)
178 1dar_A EF-G, elongation factor 99.8 1E-17 3.5E-22 145.4 14.0 118 11-134 8-143 (691)
179 2j69_A Bacterial dynamin-like 99.8 8.1E-18 2.8E-22 146.1 12.9 164 14-180 68-326 (695)
180 1h65_A Chloroplast outer envel 99.7 2.8E-17 9.6E-22 127.7 14.3 119 13-134 37-168 (270)
181 3t34_A Dynamin-related protein 99.7 9.3E-19 3.2E-23 141.5 5.7 161 14-178 33-260 (360)
182 2dy1_A Elongation factor G; tr 99.7 3.8E-17 1.3E-21 141.3 15.8 115 13-133 7-139 (665)
183 2h5e_A Peptide chain release f 99.7 2E-17 6.8E-22 139.4 13.4 116 13-134 11-148 (529)
184 2xex_A Elongation factor G; GT 99.7 2E-17 6.7E-22 143.7 13.7 117 12-134 7-141 (693)
185 2qnr_A Septin-2, protein NEDD5 99.7 9.2E-19 3.1E-23 138.0 3.9 163 12-180 15-215 (301)
186 1wxq_A GTP-binding protein; st 99.7 5.9E-18 2E-22 138.0 8.0 85 16-100 1-114 (397)
187 2rdo_7 EF-G, elongation factor 99.7 7.8E-17 2.7E-21 140.0 15.3 119 12-134 7-148 (704)
188 1jwy_B Dynamin A GTPase domain 99.7 1.5E-17 5E-22 132.0 8.8 112 64-179 131-262 (315)
189 2qag_C Septin-7; cell cycle, c 99.7 3.1E-17 1.1E-21 134.2 8.8 162 11-177 27-225 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 1E-17 3.6E-22 132.0 5.3 134 30-175 32-169 (301)
191 2wsm_A Hydrogenase expression/ 99.7 5.4E-17 1.8E-21 122.3 7.3 156 14-181 29-216 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 2.7E-18 9.3E-23 138.3 -1.6 157 15-175 31-254 (353)
193 3p32_A Probable GTPase RV1496/ 99.7 7.3E-17 2.5E-21 130.1 5.3 106 64-180 172-285 (355)
194 1jal_A YCHF protein; nucleotid 99.6 2.8E-15 9.6E-20 120.1 14.2 84 16-99 3-108 (363)
195 3vqt_A RF-3, peptide chain rel 99.6 3.8E-15 1.3E-19 126.0 13.6 115 14-134 30-166 (548)
196 2www_A Methylmalonic aciduria 99.6 3E-16 1E-20 126.1 3.7 103 64-179 167-279 (349)
197 2hf9_A Probable hydrogenase ni 99.6 3.4E-15 1.2E-19 112.7 9.0 154 14-179 37-224 (226)
198 4a9a_A Ribosome-interacting GT 99.6 2.9E-14 9.8E-19 114.9 14.8 156 13-171 70-240 (376)
199 1n0u_A EF-2, elongation factor 99.6 2.8E-15 9.6E-20 132.6 9.3 119 12-134 16-164 (842)
200 2dby_A GTP-binding protein; GD 99.6 6.5E-15 2.2E-19 118.6 8.7 156 16-171 2-254 (368)
201 2qpt_A EH domain-containing pr 99.6 1.8E-15 6E-20 128.2 5.5 120 12-134 62-232 (550)
202 2p67_A LAO/AO transport system 99.5 6.1E-15 2.1E-19 118.2 5.7 105 64-179 149-261 (341)
203 1yrb_A ATP(GTP)binding protein 99.5 1.1E-13 3.9E-18 106.6 12.4 110 64-179 109-257 (262)
204 3j25_A Tetracycline resistance 99.5 2.4E-15 8.1E-20 129.6 2.3 113 16-134 3-133 (638)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 1.9E-14 6.3E-19 124.9 4.9 158 14-176 50-275 (772)
206 4fn5_A EF-G 1, elongation fact 99.5 6E-13 2E-17 116.1 13.7 118 13-134 11-151 (709)
207 2qm8_A GTPase/ATPase; G protei 99.4 3.1E-13 1.1E-17 107.9 8.7 103 64-178 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 5.5E-13 1.9E-17 105.0 9.1 97 74-174 66-164 (302)
209 3l82_B F-box only protein 4; T 99.4 6.1E-14 2.1E-18 103.0 1.9 105 72-180 110-224 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.6E-11 5.4E-16 99.5 12.7 87 13-99 18-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 1.2E-12 4E-17 106.0 4.9 89 13-101 20-130 (396)
212 3l2o_B F-box only protein 4; s 99.3 1.9E-12 6.3E-17 99.6 3.9 106 71-180 194-309 (312)
213 2qag_B Septin-6, protein NEDD5 99.1 2.3E-10 7.8E-15 93.4 6.9 62 13-74 40-105 (427)
214 3sop_A Neuronal-specific septi 99.0 4.1E-10 1.4E-14 87.2 6.3 138 15-157 2-178 (270)
215 3h2y_A GTPase family protein; 99.0 9E-10 3.1E-14 88.9 6.7 96 73-176 55-157 (368)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 5.3E-11 1.8E-15 96.2 -0.8 139 16-165 163-317 (369)
217 2j37_W Signal recognition part 98.9 3.1E-10 1.1E-14 94.8 3.5 149 14-176 100-310 (504)
218 3h2y_A GTPase family protein; 98.9 3.5E-11 1.2E-15 97.2 -4.5 134 16-160 161-311 (368)
219 1tq4_A IIGP1, interferon-induc 98.8 6.2E-08 2.1E-12 79.1 13.7 157 16-179 70-253 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 3E-09 1E-13 85.9 4.8 97 73-177 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.8 1.2E-08 4E-13 79.5 6.8 102 69-181 4-108 (282)
222 3dm5_A SRP54, signal recogniti 98.5 3.7E-08 1.3E-12 80.8 3.0 91 64-167 183-279 (443)
223 1puj_A YLQF, conserved hypothe 98.5 9.3E-08 3.2E-12 74.4 5.1 57 14-75 119-176 (282)
224 3cnl_A YLQF, putative uncharac 98.4 6.9E-08 2.4E-12 74.3 2.5 56 16-76 100-156 (262)
225 2v3c_C SRP54, signal recogniti 98.4 7.9E-07 2.7E-11 73.1 7.5 83 64-158 181-271 (432)
226 3kl4_A SRP54, signal recogniti 98.3 1.3E-07 4.6E-12 77.4 1.4 90 64-166 180-277 (433)
227 1f5n_A Interferon-induced guan 98.3 4.2E-07 1.4E-11 77.3 4.1 64 13-76 36-103 (592)
228 3cnl_A YLQF, putative uncharac 98.2 4.7E-07 1.6E-11 69.6 2.6 93 71-175 4-97 (262)
229 1j8m_F SRP54, signal recogniti 98.2 2.7E-06 9.2E-11 66.6 6.0 92 64-169 181-281 (297)
230 1t9h_A YLOQ, probable GTPase E 98.2 6.6E-07 2.2E-11 70.2 2.3 90 79-171 78-169 (307)
231 2rcn_A Probable GTPase ENGC; Y 98.1 8.7E-06 3E-10 65.1 8.1 86 84-173 127-213 (358)
232 3szr_A Interferon-induced GTP- 98.0 9.2E-06 3.2E-10 69.7 6.9 23 17-39 47-69 (608)
233 3e70_C DPA, signal recognition 98.0 1.2E-05 4.2E-10 63.7 6.1 92 65-169 213-310 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.7 1.4E-06 4.9E-11 72.5 -3.2 110 13-127 37-156 (469)
235 3q5d_A Atlastin-1; G protein, 97.7 5.7E-05 1.9E-09 62.2 5.8 26 13-38 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 5E-05 1.7E-09 54.8 3.1 24 16-39 1-24 (178)
237 1kgd_A CASK, peripheral plasma 97.4 9.1E-05 3.1E-09 53.4 3.0 22 17-38 7-28 (180)
238 4dzz_A Plasmid partitioning pr 97.4 0.0002 6.8E-09 52.4 4.8 85 64-156 76-162 (206)
239 1lvg_A Guanylate kinase, GMP k 97.4 0.0001 3.4E-09 54.0 3.0 22 17-38 6-27 (198)
240 3a00_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 52.8 2.9 22 18-39 4-25 (186)
241 2xxa_A Signal recognition part 97.3 0.0027 9.3E-08 52.1 10.9 83 64-158 184-273 (433)
242 3tr0_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 53.1 3.0 22 17-38 9-30 (205)
243 1znw_A Guanylate kinase, GMP k 97.2 0.00016 5.4E-09 53.3 3.0 23 17-39 22-44 (207)
244 1zp6_A Hypothetical protein AT 97.2 0.00017 5.7E-09 52.2 2.9 23 16-38 10-32 (191)
245 1s96_A Guanylate kinase, GMP k 97.2 0.00017 5.9E-09 53.7 3.0 23 17-39 18-40 (219)
246 1z6g_A Guanylate kinase; struc 97.2 0.00019 6.4E-09 53.4 3.0 23 17-39 25-47 (218)
247 1ex7_A Guanylate kinase; subst 97.2 4.1E-05 1.4E-09 55.6 -0.6 22 18-39 4-25 (186)
248 2ffh_A Protein (FFH); SRP54, s 97.2 0.00024 8.1E-09 58.2 3.8 85 64-159 181-271 (425)
249 1htw_A HI0065; nucleotide-bind 97.2 0.00022 7.4E-09 50.4 3.0 23 17-39 35-57 (158)
250 3ney_A 55 kDa erythrocyte memb 97.2 0.00027 9.3E-09 51.7 3.4 23 16-38 20-42 (197)
251 4gp7_A Metallophosphoesterase; 97.1 0.00021 7.1E-09 51.0 2.7 20 17-36 11-30 (171)
252 3c8u_A Fructokinase; YP_612366 97.1 0.00023 7.8E-09 52.5 2.9 24 15-38 22-45 (208)
253 3tif_A Uncharacterized ABC tra 97.1 0.00022 7.5E-09 53.7 2.9 23 17-39 33-55 (235)
254 3tau_A Guanylate kinase, GMP k 97.1 0.00028 9.5E-09 52.0 3.0 23 17-39 10-32 (208)
255 3cwq_A Para family chromosome 97.1 0.0041 1.4E-07 45.8 9.2 85 64-156 68-153 (209)
256 1knq_A Gluconate kinase; ALFA/ 97.1 0.00046 1.6E-08 49.2 3.9 22 16-37 9-30 (175)
257 2pcj_A ABC transporter, lipopr 97.1 0.00026 8.9E-09 52.9 2.7 23 17-39 32-54 (224)
258 2onk_A Molybdate/tungstate ABC 97.1 0.00032 1.1E-08 53.0 3.1 23 17-39 26-48 (240)
259 1sgw_A Putative ABC transporte 97.0 0.00034 1.2E-08 51.9 2.9 23 17-39 37-59 (214)
260 1kag_A SKI, shikimate kinase I 97.0 0.00036 1.2E-08 49.5 3.0 23 16-38 5-27 (173)
261 2bdt_A BH3686; alpha-beta prot 97.0 0.00036 1.2E-08 50.4 3.0 21 17-37 4-24 (189)
262 1b0u_A Histidine permease; ABC 97.0 0.00034 1.1E-08 53.6 2.9 23 17-39 34-56 (262)
263 3gfo_A Cobalt import ATP-bindi 97.0 0.00034 1.2E-08 54.0 2.9 23 17-39 36-58 (275)
264 2qor_A Guanylate kinase; phosp 97.0 0.00038 1.3E-08 51.1 3.0 23 16-38 13-35 (204)
265 2j41_A Guanylate kinase; GMP, 97.0 0.00037 1.3E-08 50.9 3.0 24 16-39 7-30 (207)
266 2cbz_A Multidrug resistance-as 97.0 0.0004 1.4E-08 52.3 3.1 23 17-39 33-55 (237)
267 1g6h_A High-affinity branched- 97.0 0.00037 1.3E-08 53.2 2.9 23 17-39 35-57 (257)
268 4g1u_C Hemin import ATP-bindin 97.0 0.00037 1.3E-08 53.5 2.9 23 17-39 39-61 (266)
269 4eun_A Thermoresistant glucoki 97.0 0.00043 1.5E-08 50.6 3.0 22 16-37 30-51 (200)
270 2rcn_A Probable GTPase ENGC; Y 97.0 0.00046 1.6E-08 55.2 3.4 24 17-40 217-240 (358)
271 1mv5_A LMRA, multidrug resista 97.0 0.00044 1.5E-08 52.3 3.1 23 17-39 30-52 (243)
272 2i3b_A HCR-ntpase, human cance 97.0 0.00039 1.3E-08 50.6 2.7 22 17-38 3-24 (189)
273 2ff7_A Alpha-hemolysin translo 97.0 0.00044 1.5E-08 52.5 3.1 23 17-39 37-59 (247)
274 2olj_A Amino acid ABC transpor 97.0 0.00041 1.4E-08 53.2 2.9 23 17-39 52-74 (263)
275 3asz_A Uridine kinase; cytidin 96.9 0.00049 1.7E-08 50.6 3.2 23 16-38 7-29 (211)
276 2pze_A Cystic fibrosis transme 96.9 0.00047 1.6E-08 51.7 3.1 23 17-39 36-58 (229)
277 1ji0_A ABC transporter; ATP bi 96.9 0.00041 1.4E-08 52.4 2.9 23 17-39 34-56 (240)
278 1vpl_A ABC transporter, ATP-bi 96.9 0.00043 1.5E-08 52.9 2.9 23 17-39 43-65 (256)
279 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00047 1.6E-08 52.4 3.1 22 17-38 31-52 (250)
280 3b85_A Phosphate starvation-in 96.9 0.00041 1.4E-08 51.3 2.6 22 17-38 24-45 (208)
281 2qi9_C Vitamin B12 import ATP- 96.9 0.00046 1.6E-08 52.5 2.9 23 17-39 28-50 (249)
282 2bbw_A Adenylate kinase 4, AK4 96.9 0.00055 1.9E-08 51.7 3.4 21 16-36 28-48 (246)
283 2zu0_C Probable ATP-dependent 96.9 0.0005 1.7E-08 52.8 3.1 22 17-38 48-69 (267)
284 2eyu_A Twitching motility prot 96.9 0.00048 1.6E-08 52.7 3.0 22 17-38 27-48 (261)
285 1ly1_A Polynucleotide kinase; 96.9 0.00062 2.1E-08 48.5 3.5 22 16-37 3-24 (181)
286 3kb2_A SPBC2 prophage-derived 96.9 0.0005 1.7E-08 48.6 2.9 22 17-38 3-24 (173)
287 3lw7_A Adenylate kinase relate 96.9 0.00053 1.8E-08 48.5 3.1 20 16-35 2-21 (179)
288 3fb4_A Adenylate kinase; psych 96.9 0.00054 1.9E-08 50.5 3.1 22 16-37 1-22 (216)
289 2ihy_A ABC transporter, ATP-bi 96.9 0.00054 1.9E-08 53.0 3.1 23 17-39 49-71 (279)
290 2ghi_A Transport protein; mult 96.9 0.00054 1.8E-08 52.4 3.1 22 17-38 48-69 (260)
291 2v9p_A Replication protein E1; 96.9 0.00057 2E-08 53.4 3.2 22 17-38 128-149 (305)
292 2ixe_A Antigen peptide transpo 96.9 0.00057 1.9E-08 52.6 3.1 23 17-39 47-69 (271)
293 3dl0_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 50.3 3.2 22 16-37 1-22 (216)
294 2nq2_C Hypothetical ABC transp 96.9 0.00053 1.8E-08 52.2 2.9 23 17-39 33-55 (253)
295 2yz2_A Putative ABC transporte 96.8 0.00055 1.9E-08 52.5 2.9 23 17-39 35-57 (266)
296 3ec2_A DNA replication protein 96.8 0.00052 1.8E-08 49.2 2.5 23 16-38 39-61 (180)
297 2vp4_A Deoxynucleoside kinase; 96.8 0.00079 2.7E-08 50.4 3.5 26 13-38 18-43 (230)
298 3t61_A Gluconokinase; PSI-biol 96.8 0.00067 2.3E-08 49.6 3.0 23 16-38 19-41 (202)
299 2pjz_A Hypothetical protein ST 96.8 0.0007 2.4E-08 51.8 3.1 23 17-39 32-54 (263)
300 1np6_A Molybdopterin-guanine d 96.8 0.00072 2.5E-08 48.5 3.0 23 16-38 7-29 (174)
301 2if2_A Dephospho-COA kinase; a 96.8 0.00066 2.3E-08 49.6 2.9 22 16-37 2-23 (204)
302 3uie_A Adenylyl-sulfate kinase 96.8 0.00068 2.3E-08 49.5 3.0 23 16-38 26-48 (200)
303 3lnc_A Guanylate kinase, GMP k 96.8 0.00042 1.4E-08 51.8 1.8 22 17-38 29-51 (231)
304 1qhx_A CPT, protein (chloramph 96.8 0.00072 2.5E-08 48.2 3.0 23 16-38 4-26 (178)
305 2ehv_A Hypothetical protein PH 96.8 0.00071 2.4E-08 50.9 3.1 20 17-36 32-51 (251)
306 3aez_A Pantothenate kinase; tr 96.8 0.00067 2.3E-08 53.3 3.0 25 14-38 89-113 (312)
307 1jjv_A Dephospho-COA kinase; P 96.8 0.00089 3.1E-08 49.0 3.5 22 16-37 3-24 (206)
308 1ak2_A Adenylate kinase isoenz 96.8 0.00078 2.7E-08 50.5 3.3 23 15-37 16-38 (233)
309 3vaa_A Shikimate kinase, SK; s 96.8 0.00082 2.8E-08 49.0 3.3 22 16-37 26-47 (199)
310 2jaq_A Deoxyguanosine kinase; 96.8 0.00077 2.6E-08 49.0 3.1 21 17-37 2-22 (205)
311 2wwf_A Thymidilate kinase, put 96.8 0.00094 3.2E-08 49.0 3.6 22 16-37 11-32 (212)
312 1t9h_A YLOQ, probable GTPase E 96.8 0.00024 8.3E-09 55.6 0.4 23 17-39 175-197 (307)
313 1cke_A CK, MSSA, protein (cyti 96.8 0.00079 2.7E-08 50.0 3.1 22 16-37 6-27 (227)
314 1u0l_A Probable GTPase ENGC; p 96.8 0.00081 2.8E-08 52.6 3.3 24 17-40 171-194 (301)
315 4a74_A DNA repair and recombin 96.8 0.00069 2.4E-08 50.3 2.7 22 17-38 27-48 (231)
316 3sr0_A Adenylate kinase; phosp 96.8 0.00082 2.8E-08 49.5 3.1 22 16-37 1-22 (206)
317 1ukz_A Uridylate kinase; trans 96.8 0.0014 4.7E-08 47.8 4.3 23 15-37 15-37 (203)
318 1lw7_A Transcriptional regulat 96.7 0.00076 2.6E-08 54.1 3.0 24 15-38 170-193 (365)
319 2yv5_A YJEQ protein; hydrolase 96.7 0.00083 2.8E-08 52.5 3.0 22 17-39 167-188 (302)
320 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00077 2.6E-08 53.9 2.8 23 17-39 32-54 (359)
321 1nks_A Adenylate kinase; therm 96.7 0.00099 3.4E-08 48.0 3.3 22 16-37 2-23 (194)
322 3nh6_A ATP-binding cassette SU 96.7 0.00061 2.1E-08 53.4 2.2 22 17-38 82-103 (306)
323 2f1r_A Molybdopterin-guanine d 96.7 0.00046 1.6E-08 49.3 1.4 22 17-38 4-25 (171)
324 3cm0_A Adenylate kinase; ATP-b 96.7 0.0012 4.1E-08 47.4 3.5 22 16-37 5-26 (186)
325 1e4v_A Adenylate kinase; trans 96.7 0.00088 3E-08 49.4 2.9 22 16-37 1-22 (214)
326 3tui_C Methionine import ATP-b 96.7 0.00094 3.2E-08 53.5 3.1 23 17-39 56-78 (366)
327 1z47_A CYSA, putative ABC-tran 96.7 0.00094 3.2E-08 53.4 3.1 23 17-39 43-65 (355)
328 2rhm_A Putative kinase; P-loop 96.7 0.0013 4.6E-08 47.3 3.7 22 16-37 6-27 (193)
329 2bbs_A Cystic fibrosis transme 96.7 0.00091 3.1E-08 52.0 2.9 23 17-39 66-88 (290)
330 2jeo_A Uridine-cytidine kinase 96.7 0.00099 3.4E-08 50.3 3.0 22 16-37 26-47 (245)
331 1uf9_A TT1252 protein; P-loop, 96.7 0.0012 4.1E-08 48.0 3.4 24 15-38 8-31 (203)
332 3rlf_A Maltose/maltodextrin im 96.6 0.001 3.5E-08 53.6 3.1 23 17-39 31-53 (381)
333 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 47.6 3.1 22 16-37 4-25 (192)
334 2yyz_A Sugar ABC transporter, 96.6 0.001 3.5E-08 53.3 3.1 23 17-39 31-53 (359)
335 2it1_A 362AA long hypothetical 96.6 0.001 3.6E-08 53.2 3.1 23 17-39 31-53 (362)
336 3jvv_A Twitching mobility prot 96.6 0.001 3.5E-08 53.2 3.0 22 17-38 125-146 (356)
337 2kjq_A DNAA-related protein; s 96.6 0.00082 2.8E-08 46.8 2.1 23 17-39 38-60 (149)
338 1y63_A LMAJ004144AAA protein; 96.6 0.0014 4.8E-08 47.2 3.4 23 16-38 11-33 (184)
339 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.3E-08 46.4 3.1 21 17-37 2-22 (168)
340 2qt1_A Nicotinamide riboside k 96.6 0.0016 5.5E-08 47.7 3.8 23 16-38 22-44 (207)
341 1g29_1 MALK, maltose transport 96.6 0.0011 3.9E-08 53.3 3.1 23 17-39 31-53 (372)
342 1v43_A Sugar-binding transport 96.6 0.0012 4E-08 53.2 3.1 23 17-39 39-61 (372)
343 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 47.0 3.3 22 16-37 6-27 (185)
344 2x8a_A Nuclear valosin-contain 96.6 0.0012 4E-08 50.9 3.0 21 18-38 47-67 (274)
345 2cdn_A Adenylate kinase; phosp 96.6 0.0016 5.6E-08 47.4 3.6 24 14-37 19-42 (201)
346 1rj9_A FTSY, signal recognitio 96.6 0.0012 4E-08 51.7 3.0 91 65-168 186-288 (304)
347 3tlx_A Adenylate kinase 2; str 96.6 0.0017 6E-08 49.0 3.8 23 15-37 29-51 (243)
348 2plr_A DTMP kinase, probable t 96.6 0.0016 5.4E-08 47.7 3.5 22 16-37 5-26 (213)
349 3b9q_A Chloroplast SRP recepto 96.5 0.0013 4.3E-08 51.5 3.0 22 16-37 101-122 (302)
350 1qf9_A UMP/CMP kinase, protein 96.5 0.0019 6.5E-08 46.4 3.7 22 16-37 7-28 (194)
351 3d31_A Sulfate/molybdate ABC t 96.5 0.00095 3.2E-08 53.2 2.2 23 17-39 28-50 (348)
352 1aky_A Adenylate kinase; ATP:A 96.5 0.0015 5E-08 48.4 3.1 22 16-37 5-26 (220)
353 3iij_A Coilin-interacting nucl 96.5 0.0015 5.1E-08 46.7 3.1 22 16-37 12-33 (180)
354 3tqc_A Pantothenate kinase; bi 96.5 0.0019 6.6E-08 50.8 3.9 25 13-37 90-114 (321)
355 1via_A Shikimate kinase; struc 96.5 0.0013 4.6E-08 46.8 2.7 21 17-37 6-26 (175)
356 1tev_A UMP-CMP kinase; ploop, 96.5 0.0018 6.3E-08 46.6 3.5 22 16-37 4-25 (196)
357 1ixz_A ATP-dependent metallopr 96.5 0.0014 5E-08 49.5 3.0 21 18-38 52-72 (254)
358 1sq5_A Pantothenate kinase; P- 96.5 0.0013 4.5E-08 51.5 2.8 23 16-38 81-103 (308)
359 2xb4_A Adenylate kinase; ATP-b 96.5 0.0016 5.6E-08 48.4 3.2 21 17-37 2-22 (223)
360 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0013 4.4E-08 52.1 2.7 23 17-39 173-195 (330)
361 1xjc_A MOBB protein homolog; s 96.5 0.0017 5.7E-08 46.3 3.0 23 16-38 5-27 (169)
362 2gza_A Type IV secretion syste 96.5 0.0013 4.5E-08 52.7 2.8 23 17-39 177-199 (361)
363 2v54_A DTMP kinase, thymidylat 96.5 0.0023 7.9E-08 46.5 3.9 23 16-38 5-27 (204)
364 1odf_A YGR205W, hypothetical 3 96.5 0.0024 8.4E-08 49.6 4.1 25 13-37 29-53 (290)
365 2ewv_A Twitching motility prot 96.5 0.0016 5.5E-08 52.4 3.2 23 16-38 137-159 (372)
366 1rz3_A Hypothetical protein rb 96.5 0.0022 7.4E-08 46.9 3.6 23 15-37 22-44 (201)
367 1gvn_B Zeta; postsegregational 96.4 0.002 6.9E-08 49.9 3.6 23 15-37 33-55 (287)
368 3gd7_A Fusion complex of cysti 96.4 0.0015 5.2E-08 52.9 2.8 22 17-38 49-70 (390)
369 1zd8_A GTP:AMP phosphotransfer 96.4 0.0018 6E-08 48.2 3.0 22 16-37 8-29 (227)
370 2pbr_A DTMP kinase, thymidylat 96.4 0.0019 6.5E-08 46.5 3.1 21 17-37 2-22 (195)
371 2ze6_A Isopentenyl transferase 96.4 0.0018 6.1E-08 49.2 3.0 21 17-37 3-23 (253)
372 1oxx_K GLCV, glucose, ABC tran 96.4 0.00093 3.2E-08 53.4 1.5 23 17-39 33-55 (353)
373 1p9r_A General secretion pathw 96.4 0.0017 5.8E-08 53.1 3.0 22 17-38 169-190 (418)
374 1jbk_A CLPB protein; beta barr 96.4 0.002 6.7E-08 46.0 3.0 23 16-38 44-66 (195)
375 2yvu_A Probable adenylyl-sulfa 96.4 0.003 1E-07 45.4 3.9 23 16-38 14-36 (186)
376 1gtv_A TMK, thymidylate kinase 96.4 0.00077 2.6E-08 49.5 0.7 21 17-37 2-22 (214)
377 4e22_A Cytidylate kinase; P-lo 96.4 0.0023 7.8E-08 48.6 3.3 21 16-36 28-48 (252)
378 3kta_A Chromosome segregation 96.3 0.002 7E-08 46.0 2.9 21 17-37 28-48 (182)
379 2z0h_A DTMP kinase, thymidylat 96.3 0.0022 7.6E-08 46.3 3.1 22 17-38 2-23 (197)
380 3be4_A Adenylate kinase; malar 96.3 0.002 7E-08 47.6 2.9 22 16-37 6-27 (217)
381 2og2_A Putative signal recogni 96.3 0.002 7E-08 51.5 3.0 22 16-37 158-179 (359)
382 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.2E-08 49.4 3.0 21 18-38 76-96 (278)
383 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0021 7.3E-08 47.6 3.0 22 17-38 25-46 (235)
384 2c95_A Adenylate kinase 1; tra 96.3 0.0021 7.2E-08 46.4 2.8 22 16-37 10-31 (196)
385 1in4_A RUVB, holliday junction 96.3 0.0021 7.1E-08 50.9 3.0 22 17-38 53-74 (334)
386 2pez_A Bifunctional 3'-phospho 96.3 0.0024 8E-08 45.6 3.0 22 16-37 6-27 (179)
387 1e6c_A Shikimate kinase; phosp 96.3 0.0024 8.4E-08 45.1 3.0 21 17-37 4-24 (173)
388 2p5t_B PEZT; postsegregational 96.3 0.002 6.9E-08 48.9 2.7 24 15-38 32-55 (253)
389 1zak_A Adenylate kinase; ATP:A 96.3 0.0021 7.1E-08 47.6 2.7 22 16-37 6-27 (222)
390 2oap_1 GSPE-2, type II secreti 96.3 0.002 6.8E-08 54.1 2.9 23 17-39 262-284 (511)
391 1nij_A Hypothetical protein YJ 96.3 0.0016 5.6E-08 51.2 2.2 24 16-39 5-28 (318)
392 2yhs_A FTSY, cell division pro 96.3 0.0023 7.8E-08 53.2 3.0 93 64-169 376-480 (503)
393 2bwj_A Adenylate kinase 5; pho 96.2 0.0024 8.2E-08 46.2 2.8 22 16-37 13-34 (199)
394 1vht_A Dephospho-COA kinase; s 96.2 0.0033 1.1E-07 46.4 3.6 22 16-37 5-26 (218)
395 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0021 7.3E-08 53.2 2.7 23 17-39 140-162 (460)
396 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0032 1.1E-07 48.0 3.6 22 16-37 5-26 (260)
397 2iyv_A Shikimate kinase, SK; t 96.2 0.0027 9.2E-08 45.5 3.0 21 17-37 4-24 (184)
398 3umf_A Adenylate kinase; rossm 96.2 0.0044 1.5E-07 46.0 4.0 20 18-37 32-51 (217)
399 2vli_A Antibiotic resistance p 96.2 0.002 6.9E-08 46.0 2.1 22 16-37 6-27 (183)
400 1nn5_A Similar to deoxythymidy 96.2 0.0027 9.3E-08 46.5 2.9 22 16-37 10-31 (215)
401 1uj2_A Uridine-cytidine kinase 96.2 0.0033 1.1E-07 47.6 3.4 24 14-37 21-44 (252)
402 2obl_A ESCN; ATPase, hydrolase 96.2 0.0028 9.5E-08 50.5 3.0 23 17-39 73-95 (347)
403 1cr0_A DNA primase/helicase; R 96.2 0.0025 8.7E-08 49.4 2.7 22 17-38 37-58 (296)
404 1lv7_A FTSH; alpha/beta domain 96.1 0.003 1E-07 47.8 3.0 23 16-38 46-68 (257)
405 1zuh_A Shikimate kinase; alpha 96.1 0.0037 1.3E-07 44.1 3.3 22 16-37 8-29 (168)
406 3co5_A Putative two-component 96.1 0.0054 1.9E-07 42.1 4.0 23 16-38 28-50 (143)
407 2f6r_A COA synthase, bifunctio 96.1 0.0057 1.9E-07 47.2 4.5 24 14-37 74-97 (281)
408 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0035 1.2E-07 53.0 3.4 23 17-39 49-71 (538)
409 1m7g_A Adenylylsulfate kinase; 96.1 0.0034 1.2E-07 46.1 3.0 22 16-37 26-47 (211)
410 2cvh_A DNA repair and recombin 96.1 0.0035 1.2E-07 46.1 3.0 21 17-37 22-42 (220)
411 2w58_A DNAI, primosome compone 96.1 0.0036 1.2E-07 45.5 3.0 23 16-38 55-77 (202)
412 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.004 1.4E-07 43.2 3.1 19 18-36 26-44 (149)
413 1n0w_A DNA repair protein RAD5 96.1 0.0036 1.2E-07 46.8 3.0 22 17-38 26-47 (243)
414 2p65_A Hypothetical protein PF 96.0 0.0028 9.7E-08 45.0 2.4 23 16-38 44-66 (187)
415 3bos_A Putative DNA replicatio 96.0 0.0035 1.2E-07 46.5 3.0 23 16-38 53-75 (242)
416 3nwj_A ATSK2; P loop, shikimat 96.0 0.0036 1.2E-07 47.5 3.0 22 16-37 49-70 (250)
417 3ozx_A RNAse L inhibitor; ATP 96.0 0.0032 1.1E-07 53.2 2.9 23 17-39 27-49 (538)
418 3euj_A Chromosome partition pr 96.0 0.0036 1.2E-07 52.0 3.0 21 17-37 31-51 (483)
419 4eaq_A DTMP kinase, thymidylat 96.0 0.0059 2E-07 45.6 3.9 23 16-38 27-49 (229)
420 3r20_A Cytidylate kinase; stru 96.0 0.0045 1.5E-07 46.4 3.2 23 15-37 9-31 (233)
421 3j16_B RLI1P; ribosome recycli 95.9 0.004 1.4E-07 53.4 3.1 23 17-39 105-127 (608)
422 2grj_A Dephospho-COA kinase; T 95.9 0.0055 1.9E-07 44.5 3.4 25 14-38 11-35 (192)
423 4ido_A Atlastin-1; GTPase, GTP 95.9 0.016 5.3E-07 47.7 6.3 24 13-36 65-88 (457)
424 1ltq_A Polynucleotide kinase; 95.9 0.0054 1.9E-07 47.5 3.6 22 16-37 3-24 (301)
425 1svm_A Large T antigen; AAA+ f 95.9 0.0043 1.5E-07 50.0 3.0 22 16-37 170-191 (377)
426 2dpy_A FLII, flagellum-specifi 95.9 0.0044 1.5E-07 51.0 3.0 23 17-39 159-181 (438)
427 3b60_A Lipid A export ATP-bind 95.8 0.0044 1.5E-07 52.9 2.9 23 17-39 371-393 (582)
428 3b5x_A Lipid A export ATP-bind 95.8 0.005 1.7E-07 52.5 3.2 23 17-39 371-393 (582)
429 3n70_A Transport activator; si 95.8 0.0057 1.9E-07 42.1 3.0 24 16-39 25-48 (145)
430 1tue_A Replication protein E1; 95.8 0.0042 1.4E-07 45.6 2.4 21 17-37 60-80 (212)
431 3bk7_A ABC transporter ATP-bin 95.8 0.0052 1.8E-07 52.7 3.1 23 17-39 119-141 (607)
432 3b9p_A CG5977-PA, isoform A; A 95.8 0.0052 1.8E-07 47.5 2.9 23 16-38 55-77 (297)
433 1njg_A DNA polymerase III subu 95.8 0.0056 1.9E-07 45.2 3.0 21 17-37 47-67 (250)
434 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0058 2E-07 46.2 3.0 23 16-38 40-62 (262)
435 3uc9_A Increased recombination 95.7 0.011 3.6E-07 44.1 4.3 28 12-39 26-53 (233)
436 3h4m_A Proteasome-activating n 95.7 0.0056 1.9E-07 47.0 2.9 23 16-38 52-74 (285)
437 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0062 2.1E-07 51.4 3.4 24 17-40 314-337 (538)
438 3ozx_A RNAse L inhibitor; ATP 95.7 0.0053 1.8E-07 51.9 2.9 24 17-40 296-319 (538)
439 3gmt_A Adenylate kinase; ssgci 95.7 0.0067 2.3E-07 45.4 3.1 24 14-37 7-30 (230)
440 2chg_A Replication factor C sm 95.7 0.0061 2.1E-07 44.4 3.0 21 18-38 41-61 (226)
441 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0061 2.1E-07 48.9 3.1 19 18-36 26-44 (365)
442 1nlf_A Regulatory protein REPA 95.7 0.0056 1.9E-07 47.1 2.7 21 17-37 32-52 (279)
443 2yl4_A ATP-binding cassette SU 95.7 0.0045 1.5E-07 53.0 2.4 23 17-39 372-394 (595)
444 3bk7_A ABC transporter ATP-bin 95.7 0.0066 2.3E-07 52.0 3.4 24 17-40 384-407 (607)
445 3cf0_A Transitional endoplasmi 95.7 0.0061 2.1E-07 47.4 2.9 23 16-38 50-72 (301)
446 3qf4_B Uncharacterized ABC tra 95.6 0.005 1.7E-07 52.7 2.5 23 17-39 383-405 (598)
447 2px0_A Flagellar biosynthesis 95.6 0.0063 2.2E-07 47.4 2.7 85 64-159 183-273 (296)
448 1q3t_A Cytidylate kinase; nucl 95.6 0.0079 2.7E-07 45.0 3.2 25 13-37 14-38 (236)
449 3zvl_A Bifunctional polynucleo 95.6 0.0067 2.3E-07 49.5 3.0 23 16-38 259-281 (416)
450 3t15_A Ribulose bisphosphate c 95.6 0.0066 2.2E-07 47.1 2.8 23 16-38 37-59 (293)
451 1p5z_B DCK, deoxycytidine kina 95.6 0.0053 1.8E-07 46.7 2.2 25 14-38 23-47 (263)
452 1l8q_A Chromosomal replication 95.6 0.0069 2.4E-07 47.5 2.9 22 17-38 39-60 (324)
453 3j16_B RLI1P; ribosome recycli 95.5 0.0071 2.4E-07 51.8 3.1 23 18-40 381-403 (608)
454 1vma_A Cell division protein F 95.5 0.0075 2.6E-07 47.2 3.0 93 64-169 187-291 (306)
455 4a82_A Cystic fibrosis transme 95.5 0.0043 1.5E-07 52.9 1.7 22 17-38 369-390 (578)
456 3ake_A Cytidylate kinase; CMP 95.5 0.0089 3E-07 43.5 3.2 21 17-37 4-24 (208)
457 2ga8_A Hypothetical 39.9 kDa p 95.5 0.011 3.7E-07 47.1 3.9 24 14-37 23-46 (359)
458 3qf4_A ABC transporter, ATP-bi 95.4 0.0058 2E-07 52.2 2.2 22 17-38 371-392 (587)
459 1sxj_E Activator 1 40 kDa subu 95.4 0.0068 2.3E-07 48.0 2.4 20 18-37 39-58 (354)
460 3qks_A DNA double-strand break 95.4 0.01 3.5E-07 43.4 3.1 19 18-36 26-44 (203)
461 1ofh_A ATP-dependent HSL prote 95.3 0.0094 3.2E-07 46.1 3.0 23 16-38 51-73 (310)
462 2dr3_A UPF0273 protein PH0284; 95.3 0.0092 3.1E-07 44.5 2.9 21 17-37 25-45 (247)
463 3syl_A Protein CBBX; photosynt 95.3 0.0095 3.3E-07 46.2 3.0 22 16-37 68-89 (309)
464 2qby_A CDC6 homolog 1, cell di 95.3 0.0086 2.9E-07 47.7 2.8 23 16-38 46-68 (386)
465 1d2n_A N-ethylmaleimide-sensit 95.3 0.014 4.9E-07 44.4 3.9 25 14-38 63-87 (272)
466 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.7E-07 43.2 3.0 24 16-39 35-58 (205)
467 1sxj_C Activator 1 40 kDa subu 95.3 0.0094 3.2E-07 47.1 2.9 21 18-38 49-69 (340)
468 4fcw_A Chaperone protein CLPB; 95.3 0.0098 3.4E-07 46.2 3.0 23 16-38 48-70 (311)
469 1pzn_A RAD51, DNA repair and r 95.3 0.0091 3.1E-07 47.6 2.7 23 17-39 133-155 (349)
470 1fnn_A CDC6P, cell division co 95.3 0.01 3.5E-07 47.5 3.0 22 17-38 46-67 (389)
471 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.01 3.5E-07 46.7 2.9 23 16-38 46-68 (322)
472 4b4t_K 26S protease regulatory 95.2 0.011 3.7E-07 48.5 3.0 23 16-38 207-229 (428)
473 2o5v_A DNA replication and rep 95.2 0.069 2.3E-06 42.7 7.6 21 17-37 28-48 (359)
474 3crm_A TRNA delta(2)-isopenten 95.2 0.012 3.9E-07 46.4 3.0 23 16-38 6-28 (323)
475 2iw3_A Elongation factor 3A; a 95.2 0.013 4.4E-07 52.8 3.6 24 17-40 463-486 (986)
476 4b4t_M 26S protease regulatory 95.1 0.012 4E-07 48.3 3.0 23 16-38 216-238 (434)
477 2iw3_A Elongation factor 3A; a 95.1 0.0073 2.5E-07 54.3 1.9 23 17-39 701-723 (986)
478 1c9k_A COBU, adenosylcobinamid 95.1 0.013 4.5E-07 42.0 2.9 21 18-38 2-22 (180)
479 3d3q_A TRNA delta(2)-isopenten 95.1 0.013 4.4E-07 46.4 3.0 22 16-37 8-29 (340)
480 3eie_A Vacuolar protein sortin 95.1 0.013 4.6E-07 45.9 3.2 23 16-38 52-74 (322)
481 4b4t_L 26S protease subunit RP 95.1 0.013 4.3E-07 48.1 3.0 23 16-38 216-238 (437)
482 2r62_A Cell division protease 95.0 0.0057 1.9E-07 46.5 0.9 21 18-38 47-67 (268)
483 3cr8_A Sulfate adenylyltranfer 95.0 0.0087 3E-07 50.7 2.1 23 16-38 370-392 (552)
484 1sxj_D Activator 1 41 kDa subu 95.0 0.013 4.4E-07 46.3 3.0 21 18-38 61-81 (353)
485 2qgz_A Helicase loader, putati 94.9 0.016 5.4E-07 45.3 3.2 23 16-38 153-175 (308)
486 1qhl_A Protein (cell division 94.9 0.0041 1.4E-07 46.5 -0.1 22 18-39 30-51 (227)
487 2v1u_A Cell division control p 94.9 0.012 4.1E-07 46.9 2.6 23 16-38 45-67 (387)
488 3exa_A TRNA delta(2)-isopenten 94.9 0.016 5.6E-07 45.3 3.1 22 17-38 5-26 (322)
489 3a8t_A Adenylate isopentenyltr 94.9 0.017 5.7E-07 45.7 3.2 22 17-38 42-63 (339)
490 3m6a_A ATP-dependent protease 94.9 0.014 4.7E-07 49.4 2.9 22 17-38 110-131 (543)
491 2dhr_A FTSH; AAA+ protein, hex 94.9 0.014 4.9E-07 48.7 2.9 22 17-38 66-87 (499)
492 2ocp_A DGK, deoxyguanosine kin 94.9 0.018 6.1E-07 43.1 3.3 23 16-38 3-25 (241)
493 3uk6_A RUVB-like 2; hexameric 94.9 0.014 4.7E-07 46.5 2.7 22 17-38 72-93 (368)
494 4b4t_J 26S protease regulatory 94.9 0.015 5.2E-07 47.1 3.0 23 16-38 183-205 (405)
495 2qp9_X Vacuolar protein sortin 94.8 0.015 5.3E-07 46.3 3.0 23 16-38 85-107 (355)
496 2bjv_A PSP operon transcriptio 94.8 0.017 5.8E-07 43.8 3.0 24 16-39 30-53 (265)
497 2ce7_A Cell division protein F 94.8 0.016 5.5E-07 48.1 3.0 22 17-38 51-72 (476)
498 3pfi_A Holliday junction ATP-d 94.8 0.016 5.6E-07 45.6 3.0 23 16-38 56-78 (338)
499 2z4s_A Chromosomal replication 94.8 0.015 5.3E-07 47.8 2.9 23 16-38 131-153 (440)
500 3te6_A Regulatory protein SIR3 94.8 0.013 4.4E-07 46.0 2.3 23 16-38 46-68 (318)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-41 Score=256.62 Aligned_cols=169 Identities=38% Similarity=0.679 Sum_probs=144.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+|+|.+|||||||++++....+...+.++.+.++....+..++..+.+.||||+|++.|..++..+++.++++|
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 34589999999999999999999999999999999998988889999999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||++++++|..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++..+++.|++|||++|.||+++|++
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 999999999999999999999888777899999999999965 5678899999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027949 173 IARDIKQRLA 182 (216)
Q Consensus 173 l~~~i~~~~~ 182 (216)
|++.+.....
T Consensus 170 i~~~i~~~~~ 179 (216)
T 4dkx_A 170 VAAALPGMES 179 (216)
T ss_dssp HHHHC-----
T ss_pred HHHHHHhhhc
Confidence 9998876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.6e-36 Score=227.33 Aligned_cols=173 Identities=58% Similarity=1.022 Sum_probs=156.3
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35677999999999999999999999999888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+....+++..++...+++++++||++|.|++++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766899999999999965 34566778888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027949 171 FSIARDIKQRLADT 184 (216)
Q Consensus 171 ~~l~~~i~~~~~~~ 184 (216)
.+|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998875544
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=224.96 Aligned_cols=195 Identities=32% Similarity=0.573 Sum_probs=148.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34569999999999999999999999888777777666443 45677888888999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+ ......+++..++..++++++++||++|.|++++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988877653 4799999999999965 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCcCC
Q 027949 171 FSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216 (216)
Q Consensus 171 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (216)
.+|++.+.++.......... ....++.+++++++||.|
T Consensus 169 ~~l~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~Cc~~ 206 (206)
T 2bov_A 169 FDLMREIRARKMEDSKEKNG--------KKKRKSLAKRIRERCCIL 206 (206)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHccccccccccC--------cccccchhhccccceecC
Confidence 99999998875443322211 122223356667788876
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.3e-35 Score=222.33 Aligned_cols=172 Identities=38% Similarity=0.708 Sum_probs=150.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 166 (216)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc--cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999888876543 4689999999999863 4456677777777 56789999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 027949 167 EEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~~~~ 185 (216)
+++|++|.+.+.+......
T Consensus 163 ~~l~~~l~~~~~~~~~~~~ 181 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVE 181 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999988765543
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=223.38 Aligned_cols=173 Identities=49% Similarity=0.838 Sum_probs=145.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 46779999999999999999999999998877888888888888888999889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||++++.++..+..|+..+......+.|++||+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999998877666799999999999864 345667788889999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 027949 172 SIARDIKQRLADTD 185 (216)
Q Consensus 172 ~l~~~i~~~~~~~~ 185 (216)
+|.+.+.++.....
T Consensus 169 ~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 169 ELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHHHHhhhcc
Confidence 99999987665544
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=7e-35 Score=214.34 Aligned_cols=174 Identities=71% Similarity=1.189 Sum_probs=128.0
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999988877788888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887666899999999999965 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 027949 171 FSIARDIKQRLADTD 185 (216)
Q Consensus 171 ~~l~~~i~~~~~~~~ 185 (216)
.+|.+.+.++..+..
T Consensus 163 ~~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 163 FTLARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccc
Confidence 999999988766544
No 7
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.7e-34 Score=211.74 Aligned_cols=175 Identities=52% Similarity=0.925 Sum_probs=156.0
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
..+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 34456678899999999999999999999999888777788887887788888888899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++..++++++++||++|.|+
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999999999998887666899999999999964 3456677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027949 167 EEVFFSIARDIKQRLA 182 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~ 182 (216)
+++|++|.+.+.++.+
T Consensus 173 ~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 173 KQVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987653
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.2e-34 Score=212.51 Aligned_cols=176 Identities=49% Similarity=0.877 Sum_probs=153.8
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
.......+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 34456778899999999999999999999999888777788888888888889998899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|+
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999999999887666899999999999964 3456678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 027949 167 EEVFFSIARDIKQRLAD 183 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~~ 183 (216)
+++|++|.+.+.++..+
T Consensus 172 ~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 172 EEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887543
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=211.90 Aligned_cols=176 Identities=63% Similarity=1.069 Sum_probs=157.4
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
....++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34556789999999999999999999999998888888888889889999999889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...........++..++++++++||++|.|+++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999999999888777899999999999965 455677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 027949 169 VFFSIARDIKQRLADTD 185 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~~ 185 (216)
+|.+|.+.+.++.....
T Consensus 169 l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999988765443
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.2e-34 Score=210.10 Aligned_cols=178 Identities=46% Similarity=0.787 Sum_probs=158.0
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
+|....++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 34555678899999999999999999999999988888888888888888889998899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .......++..++...+++++++||++|.|+
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999999999999888877667899999999999964 3456677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 027949 167 EEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~~~~ 185 (216)
+++|++|.+.+.++.....
T Consensus 161 ~~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 161 EEAFVQCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 9999999999998765544
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=215.53 Aligned_cols=174 Identities=48% Similarity=0.867 Sum_probs=145.6
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
..+.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 34456778899999999999999999999999887777788877888888888988899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCC
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 165 (216)
.+|++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++...++ +++++||++|.|
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 999999999999999999999999998887666899999999999964 345677888999999998 999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027949 166 VEEVFFSIARDIKQRL 181 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~ 181 (216)
++++|++|.+.+.++.
T Consensus 180 i~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 180 VEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-34 Score=213.40 Aligned_cols=174 Identities=47% Similarity=0.848 Sum_probs=155.3
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567789999999999999999999999988888888888888888899999889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|+++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999998887666899999999999864 345667788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027949 169 VFFSIARDIKQRLAD 183 (216)
Q Consensus 169 l~~~l~~~i~~~~~~ 183 (216)
+|.+|.+.+.++...
T Consensus 179 l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 179 LFLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999876543
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=211.22 Aligned_cols=176 Identities=43% Similarity=0.791 Sum_probs=154.9
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
..+++.++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34456778899999999999999999999999888777788787787788888888899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|+
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999999988876666899999999999965 3456677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 027949 167 EEVFFSIARDIKQRLAD 183 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~~~ 183 (216)
+++|++|.+.+.++..+
T Consensus 176 ~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 176 ELAFETVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=207.15 Aligned_cols=174 Identities=56% Similarity=0.945 Sum_probs=153.7
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45567899999999999999999999999888888888888888889999998899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999998877654 689999999999865 4556778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 027949 170 FFSIARDIKQRLADTD 185 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~~ 185 (216)
|++|.+.+.+...+..
T Consensus 162 ~~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 162 FNCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999988766544
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-33 Score=208.79 Aligned_cols=173 Identities=51% Similarity=0.947 Sum_probs=155.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34577999999999999999999999998887777888878888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++..++++++++||++|.|++++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998877666899999999999965 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027949 171 FSIARDIKQRLADT 184 (216)
Q Consensus 171 ~~l~~~i~~~~~~~ 184 (216)
++|.+.+.++..+.
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876654
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=215.08 Aligned_cols=174 Identities=53% Similarity=0.960 Sum_probs=156.1
Q ss_pred cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
+..+.++.+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 34456788999999999999999999999998888888888888888888887777899999999999999999999999
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999887767899999999999864 45677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027949 168 EVFFSIARDIKQRLA 182 (216)
Q Consensus 168 ~l~~~l~~~i~~~~~ 182 (216)
++|++|.+.+.++..
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987754
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.5e-33 Score=204.53 Aligned_cols=167 Identities=38% Similarity=0.780 Sum_probs=142.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.++|+|+|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988877888888888878888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999999888776655799999999999865 345667888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 027949 172 SIARDIKQ 179 (216)
Q Consensus 172 ~l~~~i~~ 179 (216)
+|.+.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 18
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.7e-33 Score=204.11 Aligned_cols=166 Identities=61% Similarity=1.098 Sum_probs=144.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46999999999999999999999998887788888888888888888888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
|+|++++.++..+..|+..+......+.|+++|+||+|+. ......+++..++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888776689999999999993 34567788888999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027949 174 ARDIKQRL 181 (216)
Q Consensus 174 ~~~i~~~~ 181 (216)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987653
No 19
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=209.84 Aligned_cols=175 Identities=45% Similarity=0.772 Sum_probs=145.6
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34567899999999999999999999999888777888888888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .......++..++...+++++++||++|.|++++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999988877666899999999999864 3456677888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 027949 170 FFSIARDIKQRLADTD 185 (216)
Q Consensus 170 ~~~l~~~i~~~~~~~~ 185 (216)
|++|.+.+.++.....
T Consensus 179 ~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 179 FLKCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999988765543
No 20
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=209.81 Aligned_cols=173 Identities=45% Similarity=0.876 Sum_probs=144.8
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
..+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34455678899999999999999999999998887777788888888888889998899999999999999998999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCC
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g 165 (216)
.+|++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++... +++++++||++|.|
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 999999999999999999999999888887767899999999999864 3456667788888774 78999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~i~~~ 180 (216)
++++|++|.+.+.++
T Consensus 177 i~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 177 VDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.1e-33 Score=204.38 Aligned_cols=169 Identities=47% Similarity=0.868 Sum_probs=151.2
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999988777888888888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++++.++..++++++++||++|.|++++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999988887766899999999999964 3456678888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027949 170 FFSIARDIKQ 179 (216)
Q Consensus 170 ~~~l~~~i~~ 179 (216)
|++|.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4.8e-33 Score=203.96 Aligned_cols=168 Identities=40% Similarity=0.715 Sum_probs=150.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988877778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999887766899999999999964 345677888899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027949 172 SIARDIKQR 180 (216)
Q Consensus 172 ~l~~~i~~~ 180 (216)
+|.+.+...
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 999877554
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-33 Score=202.20 Aligned_cols=169 Identities=53% Similarity=0.966 Sum_probs=142.7
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
..+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4467799999999999999999999998875 466778887887777888998899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999988887666899999999999965 3456677888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 170 FFSIARDIKQR 180 (216)
Q Consensus 170 ~~~l~~~i~~~ 180 (216)
|++|.+.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 24
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.6e-33 Score=204.56 Aligned_cols=170 Identities=41% Similarity=0.703 Sum_probs=136.2
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999998887788888777777777776 556889999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCC
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLN 165 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g 165 (216)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.......+++..++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876543 5789999999999965555667788888887 4568999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027949 166 VEEVFFSIARDIKQRL 181 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~ 181 (216)
++++|++|.+.+.+++
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=208.21 Aligned_cols=172 Identities=37% Similarity=0.692 Sum_probs=149.6
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
.+.+..+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 45556678899999999999999999999999887777788887787788888888899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....+++..++...+++++++||++|.|+
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 999999999999999999999999999887766899999999999964 3456778889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~i~~ 179 (216)
+++|++|.+.+.+
T Consensus 174 ~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 174 EELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.1e-32 Score=201.92 Aligned_cols=170 Identities=35% Similarity=0.592 Sum_probs=147.8
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 445699999999999999999999999887777777765554 6677888888999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999998887443 345799999999999864 34566778888888999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027949 171 FSIARDIKQRLAD 183 (216)
Q Consensus 171 ~~l~~~i~~~~~~ 183 (216)
++|.+.+.+....
T Consensus 164 ~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 164 EQLVRAVRKYQEQ 176 (181)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876543
No 27
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.2e-33 Score=211.93 Aligned_cols=177 Identities=47% Similarity=0.873 Sum_probs=151.4
Q ss_pred cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe----------EEEEEEEeCCCcccc
Q 027949 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERF 77 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~ 77 (216)
...+.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.|||+||++.+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 3446678899999999999999999999998887777788777777777777665 689999999999999
Q ss_pred ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEE
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFF 156 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
...+..+++.+|++|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+ ...+..+++..++..++++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEE
Confidence 99999999999999999999999999999999887765443 5789999999999964 345667888899999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhccc
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQRLADTD 185 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 185 (216)
++||++|.|++++|++|.+.+.++.....
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999988765543
No 28
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.6e-32 Score=202.42 Aligned_cols=169 Identities=36% Similarity=0.619 Sum_probs=145.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 469999999999999999999999887766666654 4555667788888899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .....+.+..++..++++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999998887754 35799999999999863 456778889999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 027949 173 IARDIKQRLADTD 185 (216)
Q Consensus 173 l~~~i~~~~~~~~ 185 (216)
|.+.+.+......
T Consensus 160 l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 160 LVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc
Confidence 9999988765543
No 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.4e-32 Score=202.69 Aligned_cols=168 Identities=23% Similarity=0.373 Sum_probs=142.5
Q ss_pred cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
........+||+|+|.+|||||||++++++..+...+.++.+ .....+.+++..+.+.+|||+|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 334556779999999999999999999999988776766633 344778889999999999999998766 7788
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMD-ESKRAVPTSKGQALADEYG-IKFFETSAKTNL 164 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (216)
+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .....+..+++..++..++ +.|+++||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 9999999999999999999999999877643 478999999999985 2345677888999999997 899999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 027949 165 NVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~~~ 182 (216)
|++++|++|++.+.++++
T Consensus 166 gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALRK 183 (184)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-33 Score=200.55 Aligned_cols=163 Identities=44% Similarity=0.752 Sum_probs=147.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999988877888888888888888898889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|++++.++..+..|+..+......+.|+++|+||+|+.+.. ..+..+....++...+++++++||++|.|++++|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999888776689999999999986432 456677888899999999999999999999999999
Q ss_pred HHHHH
Q 027949 173 IARDI 177 (216)
Q Consensus 173 l~~~i 177 (216)
|.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 98764
No 31
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=209.53 Aligned_cols=165 Identities=34% Similarity=0.511 Sum_probs=139.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 3459999999999999999999999888766666655333 345667888889999999999999888999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++..++++++++||++|.|++++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 99999999999998888877766542 3689999999999864 4456778888888999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027949 171 FSIARDIKQR 180 (216)
Q Consensus 171 ~~l~~~i~~~ 180 (216)
++|.+.+.++
T Consensus 163 ~~l~~~~~~~ 172 (199)
T 2gf0_A 163 QELLTLETRR 172 (199)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHHHhhh
Confidence 9999876543
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8.9e-33 Score=200.22 Aligned_cols=164 Identities=46% Similarity=0.789 Sum_probs=147.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35699999999999999999999998888777788887787888888888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988887666899999999999864 3456677888899999999999999999999999999
Q ss_pred HHHHH
Q 027949 173 IARDI 177 (216)
Q Consensus 173 l~~~i 177 (216)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=7.2e-33 Score=200.46 Aligned_cols=165 Identities=38% Similarity=0.701 Sum_probs=148.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999888788888888888888888988899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887765 4789999999999864 3446677888899999999999999999999999999
Q ss_pred HHHHHHH
Q 027949 173 IARDIKQ 179 (216)
Q Consensus 173 l~~~i~~ 179 (216)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.9e-32 Score=202.72 Aligned_cols=173 Identities=49% Similarity=0.893 Sum_probs=151.3
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~ 80 (216)
+.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+..++. .+.+.+||+||.+.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567799999999999999999999998887777787777766 566666655 689999999999999999
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++..++++++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999988877654 5799999999999864 345667888899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcc
Q 027949 160 AKTNLNVEEVFFSIARDIKQRLADT 184 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~~~~ 184 (216)
|++|.|++++|++|.+.+.++....
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998876554
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.1e-32 Score=198.35 Aligned_cols=164 Identities=39% Similarity=0.728 Sum_probs=148.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999988777888888888888888988899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|||++++.++..+..|+..+........|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 999999999999999999999887667899999999999965 3456677888899999999999999999999999999
Q ss_pred HHHHH
Q 027949 173 IARDI 177 (216)
Q Consensus 173 l~~~i 177 (216)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98865
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=209.37 Aligned_cols=170 Identities=46% Similarity=0.785 Sum_probs=138.4
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34566799999999999999999999999887777777777777788888998899999999999999988999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ ....+..+++..++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 999999999999999999999988877666799999999999852 235566788889999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQ 179 (216)
Q Consensus 165 gi~~l~~~l~~~i~~ 179 (216)
|++++|.+|.+.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988753
No 37
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.6e-32 Score=201.32 Aligned_cols=168 Identities=32% Similarity=0.492 Sum_probs=147.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3569999999999999999999998888877777777665 677788998899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999988866543 4789999999999964 466778889999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 027949 172 SIARDIKQRLA 182 (216)
Q Consensus 172 ~l~~~i~~~~~ 182 (216)
+|++.+.....
T Consensus 162 ~l~~~~~~~~~ 172 (181)
T 3t5g_A 162 RIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcC
Confidence 99999877643
No 38
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.1e-32 Score=200.19 Aligned_cols=167 Identities=36% Similarity=0.590 Sum_probs=148.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445679999999999999999999999988877777777555 6777888988999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC-CCCCHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEE 168 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~ 168 (216)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+....+++..++..++++++++||+ +|.|+++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 99999999999999999998888664 335789999999999965 45677888999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027949 169 VFFSIARDIKQ 179 (216)
Q Consensus 169 l~~~l~~~i~~ 179 (216)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.5e-32 Score=199.46 Aligned_cols=167 Identities=40% Similarity=0.687 Sum_probs=144.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35669999999999999999999999988878888888888888888999889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 166 (216)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......+++..++. ..+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999988876543 578999999999986 34566778888887 55689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|.+.+.++
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 40
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=204.56 Aligned_cols=172 Identities=60% Similarity=1.084 Sum_probs=152.3
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999998887788888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+. ......++...++..++++++++||++|.|++++|
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998888766679999999999993 35566778888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027949 171 FSIARDIKQRLADT 184 (216)
Q Consensus 171 ~~l~~~i~~~~~~~ 184 (216)
.+|.+.+.++....
T Consensus 174 ~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 174 FTLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876543
No 41
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-33 Score=208.61 Aligned_cols=168 Identities=32% Similarity=0.624 Sum_probs=141.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4569999999999999999999999888777777766444 455677888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------ccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKTN 163 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
+|||+++++++..+. .|+..+....+ +.|++||+||+|+.+... .+..+++..++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 69888877654 799999999999864321 2367788889999996 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 027949 164 LNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~~~ 182 (216)
.|++++|++|++.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHhhhhh
Confidence 9999999999999876543
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.2e-32 Score=201.20 Aligned_cols=166 Identities=39% Similarity=0.710 Sum_probs=149.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999888888888888888888889998899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999888877666899999999999865 3456677888888899999999999999999999999
Q ss_pred HHHHHHH
Q 027949 173 IARDIKQ 179 (216)
Q Consensus 173 l~~~i~~ 179 (216)
|.+.+.+
T Consensus 171 l~~~~~~ 177 (179)
T 2y8e_A 171 VAAALPG 177 (179)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9887643
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.4e-32 Score=203.21 Aligned_cols=169 Identities=43% Similarity=0.818 Sum_probs=144.9
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGA 88 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~ 88 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 344567999999999999999999999998887788888888888888899988999999999999888 7888899999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC---C
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN---L 164 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~ 164 (216)
|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..++...+++++++||++| .
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 99999999999999999999998887765 45799999999999964 3456678888999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQ 179 (216)
Q Consensus 165 gi~~l~~~l~~~i~~ 179 (216)
|++++|.+|.+.+.+
T Consensus 174 ~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 174 HVEAIFMTLAHKLKS 188 (189)
T ss_dssp CHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887753
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-32 Score=207.82 Aligned_cols=172 Identities=20% Similarity=0.446 Sum_probs=144.3
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3455679999999999999999999999998887788777555 455667777899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027949 90 GILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF 156 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (216)
++|+|||++++.++.. +..|+..+.... .+.|++||+||+|+.++ .+.+..+++..++..+++ +|+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999998 688998888775 47999999999999643 256788899999999998 999
Q ss_pred EEecCCCCC-HHHHHHHHHHHHHHHhhc
Q 027949 157 ETSAKTNLN-VEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 157 ~~Sa~~~~g-i~~l~~~l~~~i~~~~~~ 183 (216)
++||++|.| ++++|++|++.+.+....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999998 999999999998866443
No 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=201.69 Aligned_cols=172 Identities=46% Similarity=0.794 Sum_probs=152.4
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34445679999999999999999999999998888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++...+++++++||++|.|++
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN--REVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS--CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc--cccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 999999999999999999999988876542 4689999999999943 4566778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027949 168 EVFFSIARDIKQRLA 182 (216)
Q Consensus 168 ~l~~~l~~~i~~~~~ 182 (216)
++|++|.+.+.+...
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 167 CAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999986543
No 46
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.5e-32 Score=198.00 Aligned_cols=165 Identities=29% Similarity=0.400 Sum_probs=132.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 93 (216)
.+||+|+|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666666777888888999999999999999988876 67777889999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 9999999999999999988877654 4799999999999964 4567788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027949 173 IARDIKQR 180 (216)
Q Consensus 173 l~~~i~~~ 180 (216)
|.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988764
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.3e-33 Score=202.16 Aligned_cols=167 Identities=34% Similarity=0.543 Sum_probs=144.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999888777777877778888888876 678999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVN-KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
|+|||++++.++..+..|+..+..... ...| +++|+||+|+.+ ......+++..++..++++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999899888876432 1345 789999999864 345667788899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 169 VFFSIARDIKQR 180 (216)
Q Consensus 169 l~~~l~~~i~~~ 180 (216)
+|++|.+.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=201.85 Aligned_cols=172 Identities=30% Similarity=0.484 Sum_probs=138.8
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+. .....+..++..+.+.+||+||.+.+..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34566799999999999999999999998877666676653 33456778888889999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027949 90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF 156 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (216)
++|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ...+..+++..++..++. +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999987 68888877654 7999999999998653 245667888899998887 999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
++||++|.|++++|++|++.+.+....
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHHhccccc
Confidence 999999999999999999999876543
No 49
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=197.13 Aligned_cols=168 Identities=32% Similarity=0.473 Sum_probs=133.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccccEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMGI 91 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~ 91 (216)
+.++|+|+|.+|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||.+. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4699999999999999999999988765433 3455566677788899889999999999887 556667788999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++..++++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999999988887653 34789999999999965 34566778888888999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027949 171 FSIARDIKQRLAD 183 (216)
Q Consensus 171 ~~l~~~i~~~~~~ 183 (216)
++|.+.+.++...
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998776543
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.2e-32 Score=200.97 Aligned_cols=169 Identities=30% Similarity=0.578 Sum_probs=146.0
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34567799999999999999999999999987777777765554 46778888899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhCCe-EEEEecCCCCCH
Q 027949 90 GILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLNV 166 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 166 (216)
++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. ......+++..++..+++. ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 56888777654 46899999999998643 3567788899999999987 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|++.+.++
T Consensus 176 ~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 176 NEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 51
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=202.02 Aligned_cols=167 Identities=28% Similarity=0.471 Sum_probs=139.5
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+||++|++.+..+ ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3456679999999999999999999999988877777776554 455677888899999999999988774 67889999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec-CCCCC
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLN 165 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~g 165 (216)
++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..+++..++..++++++++|| ++|.|
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 9999999999999999999998887653 24799999999999964 3556778899999999999999999 89999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~i~~ 179 (216)
++++|++|++.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 52
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=203.90 Aligned_cols=169 Identities=29% Similarity=0.393 Sum_probs=141.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (216)
.....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999986554434445556666777788899889999999999987664 6777889999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++|.|+++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 99999999999999999999988877553 4799999999999965 345677888889999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 169 VFFSIARDIKQR 180 (216)
Q Consensus 169 l~~~l~~~i~~~ 180 (216)
+|++|++.+.+.
T Consensus 178 lf~~l~~~i~~~ 189 (195)
T 3cbq_A 178 LFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-31 Score=199.73 Aligned_cols=165 Identities=35% Similarity=0.629 Sum_probs=145.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE-----------------------------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------------------- 63 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 63 (216)
+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456999999999999999999999998887788888877877777777655
Q ss_pred --------EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 64 --------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 64 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+.+.+||+||++.+...+..+++.+|++|+|+|++++.++..+..|+..+.... +.|+++|+||+|+ .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D~--~ 160 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDK--N 160 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTTC--C
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCCc--c
Confidence 889999999999999999999999999999999999999999999998887765 3899999999993 3
Q ss_pred CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
......+++..++...+++++++||++|.|++++|++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 4566778899999999999999999999999999999999988754
No 54
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=204.29 Aligned_cols=171 Identities=28% Similarity=0.501 Sum_probs=141.7
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||.+.+...+..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3445679999999999999999999999998877777776555 555666666789999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...++..++...+++++++||++|.|+++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 9999999999999999999998887653 24689999999999865 456777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027949 169 VFFSIARDIKQRLA 182 (216)
Q Consensus 169 l~~~l~~~i~~~~~ 182 (216)
+|.+|.+.+.+...
T Consensus 177 l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 177 IFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987643
No 55
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-32 Score=204.02 Aligned_cols=171 Identities=23% Similarity=0.527 Sum_probs=142.6
Q ss_pred ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
.|....+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 4555567789999999999999999999999988877777776554 445677887899999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-C
Q 027949 87 GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-I 153 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~ 153 (216)
.+|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. .+.+..+++..++..++ +
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 99999999999999999998 67888887765 37899999999999642 24567788889999888 6
Q ss_pred eEEEEecC-CCCCHHHHHHHHHHHHHH
Q 027949 154 KFFETSAK-TNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 154 ~~~~~Sa~-~~~gi~~l~~~l~~~i~~ 179 (216)
+|+++||+ ++.|++++|++|++.++.
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999999 689999999999998875
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.3e-31 Score=195.83 Aligned_cols=170 Identities=35% Similarity=0.568 Sum_probs=134.4
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+....++|+|+|.+|||||||+++|++..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 34456699999999999999999999998877666665543 33456778888889999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++..++++++++||++|.|+++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999888876543 4689999999999865 45667888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027949 169 VFFSIARDIKQRLA 182 (216)
Q Consensus 169 l~~~l~~~i~~~~~ 182 (216)
+|++|.+.+.+.+.
T Consensus 173 l~~~l~~~~~~~~~ 186 (190)
T 3con_A 173 AFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.4e-31 Score=196.91 Aligned_cols=169 Identities=35% Similarity=0.623 Sum_probs=145.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34569999999999999999999999888766666665443 45567788888999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++..++++++++||++|.|++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 999999999999999999988877654 4799999999999865 34466788888999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027949 171 FSIARDIKQRLA 182 (216)
Q Consensus 171 ~~l~~~i~~~~~ 182 (216)
++|.+.+.++..
T Consensus 173 ~~l~~~i~~~~~ 184 (187)
T 2a9k_A 173 FDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.1e-32 Score=206.29 Aligned_cols=171 Identities=25% Similarity=0.485 Sum_probs=113.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEECCe--EEEEEEEeCCCccccccccccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...++|+|+|.+|+|||||+++|++. .+...+.++.+.+.....+.+++. .+.+.+||+||.+.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 666677777776777778888876 78999999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC-CC
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NL 164 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 164 (216)
|++|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+....+..+++..++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 58999999999999652345677889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 027949 165 NVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~~~~ 183 (216)
|++++|++|.+.+.+...+
T Consensus 178 gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYED 196 (208)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=197.73 Aligned_cols=165 Identities=28% Similarity=0.549 Sum_probs=143.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35679999999999999999999999988777777766444 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027949 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+.. +.+..+++..++..+++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 68888877654 78999999999996532 35677888899999997 99999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~ 178 (216)
||++|.|++++|++|.+.++
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998875
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.2e-31 Score=194.73 Aligned_cols=164 Identities=24% Similarity=0.397 Sum_probs=137.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+|+|.+|||||||+++|.+..+.. +.++.+ +.....+..++..+.+.+||++|++. ..+++++|++|+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 46999999999999999999999988875 556655 33456677888889999999999875 457788999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEE 168 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~ 168 (216)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ..+.+..+++..++... +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 999999999999999766665443 35789999999999852 24556778888888877 58999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027949 169 VFFSIARDIKQRLADT 184 (216)
Q Consensus 169 l~~~l~~~i~~~~~~~ 184 (216)
+|++|.+.+.+.....
T Consensus 159 lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 159 VFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876554
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.4e-31 Score=193.43 Aligned_cols=163 Identities=36% Similarity=0.662 Sum_probs=139.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 48999999999999999999999887766666665443 45567888888999999999999998999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999988877654 4799999999999865 34467788888999999999999999999999999999
Q ss_pred HHHHHH
Q 027949 174 ARDIKQ 179 (216)
Q Consensus 174 ~~~i~~ 179 (216)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998753
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.3e-31 Score=192.34 Aligned_cols=163 Identities=33% Similarity=0.454 Sum_probs=121.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|.+|+|||||++++.+..... ..++.+... ...+..++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 4899999999999999999999776542 223333333 45667888889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999988887653 35799999999999965 45677888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 027949 174 ARDIKQR 180 (216)
Q Consensus 174 ~~~i~~~ 180 (216)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998765
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-31 Score=199.39 Aligned_cols=171 Identities=30% Similarity=0.406 Sum_probs=137.0
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRG 87 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 87 (216)
......+||+|+|.+|||||||+++|.+.... ....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34556799999999999999999999975431 12223455566667788899889999999999876 45566778899
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
+|++|+|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+ .+.+..++...++..++++++++||++|.|+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999988776532 34799999999999964 3456667778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027949 167 EEVFFSIARDIKQRL 181 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~ 181 (216)
+++|++|++.+....
T Consensus 191 ~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 191 KELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.6e-31 Score=196.60 Aligned_cols=167 Identities=34% Similarity=0.592 Sum_probs=142.8
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+||+|+|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 4466799999999999999999999999887777777665554 346778888999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEE
Q 027949 91 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFE 157 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~ 157 (216)
+|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +.+..+++..++...+. ++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999998 56887777654 378999999999986531 34566788888988887 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 027949 158 TSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
+||++|.|++++|++|.+.+++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.7e-31 Score=196.72 Aligned_cols=166 Identities=24% Similarity=0.538 Sum_probs=141.6
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 34569999999999999999999999988777777766554 34567788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027949 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET 158 (216)
Q Consensus 92 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (216)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. .+.+..+++..++..++ ++|+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888887664 37999999999998642 24567788889999888 799999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q 027949 159 SAK-TNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 159 Sa~-~~~gi~~l~~~l~~~i~~ 179 (216)
||+ ++.|++++|++|.+.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999998764
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.6e-31 Score=191.78 Aligned_cols=163 Identities=38% Similarity=0.644 Sum_probs=141.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 489999999999999999999998887666666553 3466677888888999999999999998889999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999888876543 5799999999999864 34566778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027949 174 ARDIKQ 179 (216)
Q Consensus 174 ~~~i~~ 179 (216)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988753
No 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=213.22 Aligned_cols=169 Identities=65% Similarity=1.101 Sum_probs=142.2
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34567899999999999999999999999888888888888888899999998899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ ......+++..++..++++++++||++|.|++++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999999999999877666899999999999965 3445556677888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 027949 170 FFSIARDIKQ 179 (216)
Q Consensus 170 ~~~l~~~i~~ 179 (216)
|++|.+.+.+
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-31 Score=196.89 Aligned_cols=166 Identities=36% Similarity=0.579 Sum_probs=143.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999988777777766444 45567788889999999999887 667888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC-CHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVF 170 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~ 170 (216)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|. |++++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 9999999999999999988887754 35799999999999965 34567788889999999999999999999 999999
Q ss_pred HHHHHHHHHHh
Q 027949 171 FSIARDIKQRL 181 (216)
Q Consensus 171 ~~l~~~i~~~~ 181 (216)
++|.+.+.++.
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 69
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.2e-31 Score=191.60 Aligned_cols=162 Identities=36% Similarity=0.676 Sum_probs=140.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888777777766444 35566777788999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ......+++..++... +++++++||++|.|++++|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999988887653 35799999999999965 3456677888888887 789999999999999999999
Q ss_pred HHHHHH
Q 027949 173 IARDIK 178 (216)
Q Consensus 173 l~~~i~ 178 (216)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=200.04 Aligned_cols=167 Identities=34% Similarity=0.594 Sum_probs=123.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45699999999999999999999998877666666543 33556778888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+. .|+..+.... .+.|++||+||+|+.+.. ..+..+++..++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999987 6888887665 468999999999986532 24566778889999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 027949 160 AKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~~ 181 (216)
|++|.|++++|++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999988653
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.2e-32 Score=203.14 Aligned_cols=173 Identities=30% Similarity=0.495 Sum_probs=146.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
....+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.+||+||.+.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999988877777777766665555554 444889999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++...+++++++||++|.|++++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999887777799999999999965 34567778888888889999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 027949 171 FSIARDIKQRLADTD 185 (216)
Q Consensus 171 ~~l~~~i~~~~~~~~ 185 (216)
++|.+.+.+......
T Consensus 167 ~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 167 LHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHHHCCTTCCB
T ss_pred HHHHHHHhccccccc
Confidence 999999987655443
No 72
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=3.9e-31 Score=194.46 Aligned_cols=164 Identities=32% Similarity=0.595 Sum_probs=141.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45999999999999999999999988877666666533 34566788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEec
Q 027949 94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 160 (216)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. ..+..++...++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 68888877654 78999999999986531 34566778888888886 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~ 179 (216)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=5.2e-31 Score=195.99 Aligned_cols=171 Identities=17% Similarity=0.314 Sum_probs=129.9
Q ss_pred cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
.........+|+|+|.+|||||||+++|++..+.. .+.++.+ .....+...+ +.+.+|||||++.+..++..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHh
Confidence 34556777999999999999999999999998876 6667666 3444455555 88999999999999999999999
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhCCeE
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKILVGNKADMDESKRAVPTSKGQ---ALADEYGIKF 155 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~ 155 (216)
.+|++|+|||+++++++..+..|+..+..... .+.|++||+||+|+.+........... .++...++++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 99999999999999999999988887765421 268999999999996532211111111 1113456899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 156 FETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 156 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
+++||++|.|++++|++|.+.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987643
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=2.3e-30 Score=186.53 Aligned_cols=162 Identities=36% Similarity=0.621 Sum_probs=140.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||++++.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 489999999999999999999998877666666543 3355667788888999999999999888889999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 173 (216)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+....++..++++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988877653 4799999999999865 4456778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027949 174 ARDIKQ 179 (216)
Q Consensus 174 ~~~i~~ 179 (216)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-30 Score=195.49 Aligned_cols=166 Identities=35% Similarity=0.608 Sum_probs=136.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.... ..+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999999887767676665443 34677888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +.+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 56888777654 378999999999986531 34566778888888887 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~~ 180 (216)
|++|.|++++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.2e-31 Score=197.60 Aligned_cols=169 Identities=23% Similarity=0.297 Sum_probs=135.5
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEE-EECCeEEEEEEEeCCCcccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
..+..+||+|+|.+|||||||++.+.+...... ..++.+.++....+ ..++..+.+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 456779999999999999999977766433221 22344434433334 5567778999999999999999
Q ss_pred ccccccccccEEEEEEeCC------CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949 80 ITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI 153 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (216)
.+..+++++|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+ ....+++..++...++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTCC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcCC
Confidence 9999999999999999999 55677777778777632 335799999999999865 3677888999999998
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 154 -KFFETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 154 -~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
+++++||++|.|++++|++|.+.+.++..+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887643
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.7e-31 Score=202.13 Aligned_cols=170 Identities=29% Similarity=0.590 Sum_probs=147.9
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+|+|.+|||||||+++++...+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 35567799999999999999999998777766677778877888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+... ......++...+++++++||++|.|++++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887754 789999999999965322 22555677888999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 027949 170 FFSIARDIKQRLAD 183 (216)
Q Consensus 170 ~~~l~~~i~~~~~~ 183 (216)
|.+|.+.+......
T Consensus 166 ~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 166 FLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHhCccc
Confidence 99999999876543
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=188.99 Aligned_cols=162 Identities=33% Similarity=0.503 Sum_probs=137.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 58999999999999999999999887766666655333 34556778888999999999999988889999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 95 YDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999998888887776532 3689999999999864 3445667788888889999999999999999999999
Q ss_pred HHHHHH
Q 027949 173 IARDIK 178 (216)
Q Consensus 173 l~~~i~ 178 (216)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987653
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=8e-30 Score=189.12 Aligned_cols=167 Identities=30% Similarity=0.439 Sum_probs=134.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC--CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 89 (216)
...+||+|+|.+|||||||+++|.+.. +...+ ++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999643 23222 3355566667788899889999999999765 4556777888999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++|+++||++|.|+++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 9999999999999999999988776643 34789999999999864 345666777788888889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027949 169 VFFSIARDIKQRL 181 (216)
Q Consensus 169 l~~~l~~~i~~~~ 181 (216)
+|++|.+.+....
T Consensus 162 lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 162 LFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999986553
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=3.3e-31 Score=194.28 Aligned_cols=163 Identities=32% Similarity=0.637 Sum_probs=125.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||++++.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 459999999999999999999999887766666654332 2234456666888899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------ccChHHHHHHHHHhCC-eEEEEecCC
Q 027949 94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAKT 162 (216)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+... .+..+++..++..++. +++++||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999987 58888877654 799999999999865322 1466778889998996 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIK 178 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~ 178 (216)
|.|++++|++|.+.++
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.3e-30 Score=193.79 Aligned_cols=164 Identities=32% Similarity=0.602 Sum_probs=137.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....+||+|+|.+|+|||||++++++..+...+.++.+ +.....+..++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45569999999999999999999999888777766664 44556677788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027949 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. ..+..+++..++...++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 6888887765 479999999999986532 12566788888988886 69999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i 177 (216)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=188.94 Aligned_cols=164 Identities=18% Similarity=0.332 Sum_probs=129.5
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCC-CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
.......++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+||+||++.+...+..++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 3445567999999999999999999999887 4555555554 5556666776 789999999999999999999999
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEe
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETS 159 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~S 159 (216)
+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...+++..+.. ..+++++++|
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA---VTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC---CCHHHHHHHhChhhccCCceEEEEcc
Confidence 9999999999999999999998888776533 47999999999998642 33445555543 2357899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i~~ 179 (216)
|++|.|++++|++|.+.+.+
T Consensus 168 a~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=7e-29 Score=184.91 Aligned_cols=169 Identities=50% Similarity=0.871 Sum_probs=147.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999887777788877888888999998899999999999999888888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 172 (216)
+|+|+.+..++..+..|+..+........|+++|+||+|+.+ .......+++.++...++.++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999888888877665555789999999999964 3445667788899999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027949 173 IARDIKQRLA 182 (216)
Q Consensus 173 l~~~i~~~~~ 182 (216)
|.+.+.+...
T Consensus 162 l~~~~~~~~~ 171 (199)
T 2f9l_A 162 ILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=8.7e-31 Score=193.54 Aligned_cols=165 Identities=22% Similarity=0.401 Sum_probs=128.9
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
.......++|+|+|.+|+|||||+++|++..+...+.++.+..+. .+...+ +.+.+||+||++.+...+..+++.+
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccC
Confidence 344556799999999999999999999998887667777665443 455555 7899999999999999999999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCC
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKT 162 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 162 (216)
|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 99999999999999999998887776532 2479999999999986521 2222222211 2346899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~~~ 180 (216)
|.|++++|++|.+.+.++
T Consensus 169 g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999876543
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=8e-30 Score=184.98 Aligned_cols=158 Identities=23% Similarity=0.421 Sum_probs=126.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|.+..+.. +.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 34999999999999999999999887753 445544 4455666665 789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 167 (216)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999888887765532 2478999999999986532 12222222 22345689999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 168 EVFFSIARDIKQ 179 (216)
Q Consensus 168 ~l~~~l~~~i~~ 179 (216)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.1e-29 Score=186.50 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=124.4
Q ss_pred CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|.+..+ ..+.++.+.. ...+.+++ +.+.+||+||.+.+...+..+++.+|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3455679999999999999999999999887 3444555433 34556666 78999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCC
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTN 163 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 163 (216)
++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.... ...+++++++||++|
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 9999999999999999998887776542 347999999999998542 2333333332 123468999999999
Q ss_pred CCHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARD 176 (216)
Q Consensus 164 ~gi~~l~~~l~~~ 176 (216)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999764
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.7e-28 Score=180.68 Aligned_cols=168 Identities=51% Similarity=0.897 Sum_probs=147.4
Q ss_pred CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+.++.++|+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34556789999999999999999999999988878888888888888999999888899999999998888888888999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
+++++|+|..+..++..+..|+..+........|+++++||+|+.+ ........++.++...++.++++||+++.|+++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998888888877665555789999999999864 344567788889999999999999999999999
Q ss_pred HHHHHHHHH
Q 027949 169 VFFSIARDI 177 (216)
Q Consensus 169 l~~~l~~~i 177 (216)
+|++|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.9e-29 Score=182.45 Aligned_cols=160 Identities=23% Similarity=0.403 Sum_probs=128.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||++++.+.. ...+.++.+ .....+.+++ +.+.+||+||++.+...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887 555666655 4445566666 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 166 (216)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 999999999999998888777654 2247999999999998653 22333333222 23568999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|.+.+.++
T Consensus 168 ~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 168 LPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.5e-30 Score=188.23 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=124.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+. .+.++.+ .....+.+++ +.+.+||+||.+.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999988776 4555554 3344556666 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 166 (216)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 9999999999999999988876642 247999999999998642 23344443332 23568999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|++.+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 166 CQGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877543
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.5e-30 Score=185.74 Aligned_cols=156 Identities=21% Similarity=0.410 Sum_probs=122.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||++++.+..+.. +.++.+ .....+..++ +.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887654 445544 3344455555 78999999999999988999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHHH
Q 027949 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 169 (216)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 999999999998888777553 23478999999999996521 222222211 123467999999999999999
Q ss_pred HHHHHHHHHH
Q 027949 170 FFSIARDIKQ 179 (216)
Q Consensus 170 ~~~l~~~i~~ 179 (216)
|++|.+.+.+
T Consensus 153 ~~~l~~~i~~ 162 (164)
T 1r8s_A 153 LDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=3e-29 Score=186.85 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=120.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|||||||++++.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3489999999999999999999988764 344554433 45667777 789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCeE
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF 155 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 155 (216)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+ ....+++..++.. .++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999998887654 234799999999999854 3456666666542 23689
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 027949 156 FETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 156 ~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=8.8e-29 Score=183.17 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=126.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|||||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999998765 34455443 456677787 889999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEec
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA 160 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 160 (216)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.++... .+++++++||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999888876532 24799999999999864 3445555555432 3468999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARD 176 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~ 176 (216)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999764
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-29 Score=184.88 Aligned_cols=161 Identities=22% Similarity=0.373 Sum_probs=125.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|||||||++++.+..+ ..+.++.+ .....+.+++ +.+.+||+||.+.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998776 34445554 3345556666 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 166 (216)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++...... .+++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 9999999999999998888776543 357999999999998642 233333333321 2358999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027949 167 EEVFFSIARDIKQRL 181 (216)
Q Consensus 167 ~~l~~~l~~~i~~~~ 181 (216)
+++|++|.+.+.+++
T Consensus 168 ~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 168 TEGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.4e-29 Score=184.76 Aligned_cols=160 Identities=22% Similarity=0.394 Sum_probs=124.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|||||||++++.+..+. .+.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987643 3445444 3445566666 78999999999999888899999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 166 (216)
+|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 999999999999998888776543 23478999999999986532 222322221 123468999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|.+.+.++
T Consensus 166 ~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 166 QDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877543
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=8.8e-30 Score=188.85 Aligned_cols=159 Identities=21% Similarity=0.390 Sum_probs=120.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||++++++..+. .+.++.+ .....+..++ +.+.+||+||.+.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 345699999999999999999999988765 3344444 4445566666 7899999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCC
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLN 165 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 165 (216)
|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...+++++++||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999988887775532 2478999999999986531 222222211 12345799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIK 178 (216)
Q Consensus 166 i~~l~~~l~~~i~ 178 (216)
++++|++|.+.+.
T Consensus 178 i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 178 LYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.6e-29 Score=188.01 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=121.3
Q ss_pred cccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 027949 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT--- 81 (216)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~--- 81 (216)
+......+..+||+|+|.+|||||||++++.+.... ....+...........+. +..+.+.+||++|++.|....
T Consensus 11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 344556677899999999999999999988875332 222222222222222332 455789999999999987766
Q ss_pred ccccccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCccChHHHHHHHH----
Q 027949 82 TAYYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES------KRAVPTSKGQALAD---- 149 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~---- 149 (216)
..+++++|++|+|||++++ +++..+..|+..+.... .+.|++||+||+|+.+. .+.+.......++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 7899999999999999997 67777777777765433 47999999999998542 12344455666777
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 150 EYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
..+++|+++||++ .|++++|.+|++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6678999999999 99999999998865
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=9.3e-28 Score=191.86 Aligned_cols=164 Identities=31% Similarity=0.575 Sum_probs=141.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||++++.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4589999999999999999999998887777666653 335567788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEec
Q 027949 94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA 160 (216)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ...+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 58888877654 7999999999998543 245677888899999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~ 179 (216)
++|.|++++|++|.+.+++
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.4e-29 Score=184.93 Aligned_cols=160 Identities=19% Similarity=0.349 Sum_probs=126.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||++++.+..+.. +.++.+ .....+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999998877653 444444 3344566666 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 166 (216)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999888887775532 2478999999999986532 22222221 1223468999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=5.9e-31 Score=196.79 Aligned_cols=163 Identities=33% Similarity=0.614 Sum_probs=135.1
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 566999999999999999999999888766666655433 3445566777788899999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. .....+++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999887 68777766544 78999999999986532 13445667777888887 999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 027949 160 AKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 160 a~~~~gi~~l~~~l~~~i 177 (216)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.4e-29 Score=183.33 Aligned_cols=164 Identities=24% Similarity=0.419 Sum_probs=120.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+||+|+|++|||||||+++|.+. .+...+.++.+.+.....+.. ++..+.+.+||++|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 344556667666665555443 234578999999999999988888999999
Q ss_pred EEEEEEeCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCe----EEEEecC
Q 027949 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK 161 (216)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 161 (216)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+. .... .+....++..++++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57888889998887654 36899999999998542 1111 23345556566776 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHHH
Q 027949 162 TNL-NVEEVFFSIARDIKQR 180 (216)
Q Consensus 162 ~~~-gi~~l~~~l~~~i~~~ 180 (216)
+|. +++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 996 9999999998877553
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.7e-27 Score=173.84 Aligned_cols=159 Identities=21% Similarity=0.204 Sum_probs=120.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 3458999999999999999999999888776666666666666777787 56789999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEecCCC
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN 163 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 163 (216)
+|+|++++...... .++..+. ..+.|+++|+||+|+.+. ..+......... + ++++++||++|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK---AANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG---GGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEECCCCCcHHHH-HHHHHHH---hCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999884222221 1122222 236899999999998652 222333222222 2 48999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027949 164 LNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~~ 181 (216)
.|++++|++|.+.+....
T Consensus 156 ~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhhhhhc
Confidence 999999999999877653
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.9e-27 Score=172.10 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=115.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR-- 86 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-- 86 (216)
.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||...+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555556666666666677777 6899999999877642 3345554
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
++|++++|+|+++.+. ...|+..+... +.|+++|+||+|+.+.. .... +...++..++++++++||++|.|+
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSL-GIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHT-TCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhcccc-Chhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 7999999999988653 34466555542 68999999999985322 2222 356778888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 167 EEVFFSIARDI 177 (216)
Q Consensus 167 ~~l~~~l~~~i 177 (216)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=189.78 Aligned_cols=169 Identities=25% Similarity=0.348 Sum_probs=123.5
Q ss_pred ccCCCCCceEEEEEEcCC---------CCcHHHHHHHHHc---CCCCCccccce-eeeEEEEE--------------EEE
Q 027949 7 RARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IEL 59 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~ 59 (216)
+........+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++.... ...
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 344456677999999999 9999999999998 44544455543 22222111 124
Q ss_pred CCeEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEEEEE
Q 027949 60 DGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVY 95 (216)
Q Consensus 60 ~~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~ 95 (216)
++..+.+.||| ++|++.+..++..+++ ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 56678999999 6667777777777777 799999999
Q ss_pred eCCCH--hHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEecCCCCCHHHHHH
Q 027949 96 DVTDE--SSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 96 d~~~~--~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~ 171 (216)
|++++ .++..+..|+..+... ...+.|++||+||+|+.+. .. .+++..++.. .+++++++||++|.|++++|+
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 99998 9999999999888765 3347999999999998542 22 2566677765 478999999999999999999
Q ss_pred HHHHHHH
Q 027949 172 SIARDIK 178 (216)
Q Consensus 172 ~l~~~i~ 178 (216)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988763
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=8.2e-28 Score=180.92 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=112.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe-EEEEEEEeCCCcccccc-ccccccccccE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG 90 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 90 (216)
...++|+|+|.+|+|||||+++|++..+...+.++ +.+.. .+.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 34589999999999999999999998877655433 32332 3566543 47899999999998887 78888999999
Q ss_pred EEEEEeCCCHh-HHHHHHHHHH-HHHHh--cCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHH-----------------
Q 027949 91 ILLVYDVTDES-SFNNIRNWIR-NIEQH--ASDNVNKILVGNKADMDESKRAV-PTSKGQALA----------------- 148 (216)
Q Consensus 91 ~i~v~d~~~~~-~~~~~~~~~~-~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~----------------- 148 (216)
+|+|||+++.. ++.....++. .+... ...+.|+++|+||+|+.+..... ..+.+....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555555443 33331 23468999999999996532210 011111111
Q ss_pred ---------------H-Hh--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 027949 149 ---------------D-EY--GIKFFETSAKTN------LNVEEVFFSIARD 176 (216)
Q Consensus 149 ---------------~-~~--~~~~~~~Sa~~~------~gi~~l~~~l~~~ 176 (216)
. .+ +++|++|||++| .|++++|+||.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 11 568999999999 9999999999875
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1e-26 Score=176.82 Aligned_cols=167 Identities=21% Similarity=0.175 Sum_probs=119.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 83 (216)
...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++ ..+.+|||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4569999999999999999999999876533344444455555556666 78999999998321 111234
Q ss_pred ccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh---HHHHHHHHHhC--CeEE
Q 027949 84 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT---SKGQALADEYG--IKFF 156 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~--~~~~ 156 (216)
++..+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+. ..... .....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 467889999999999987754 2234555554432 36899999999998653 23332 24566677776 8999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 157 ETSAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
++||++|.|++++|++|.+.+.+.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.7e-28 Score=191.71 Aligned_cols=159 Identities=21% Similarity=0.401 Sum_probs=119.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|.+..+... .++.+ .....+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3458999999999999999999998876533 24333 4445566666 78999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (216)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 166 (216)
+|||++++.++..+..|+..+.... ..+.|++||+||+|+.+.. ..+++..... ..+++++++||++|.|+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence 9999999999999888776665432 3478999999999986532 2222222221 22457999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~i~~ 179 (216)
+++|++|.+.+.+
T Consensus 315 ~el~~~l~~~l~~ 327 (329)
T 3o47_A 315 YEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.6e-26 Score=181.85 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=125.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA 88 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 88 (216)
.+||+|+|.+|||||||++++++..... ...+..+.+.....+.+++ .+.+.+||+||++.+ ...+..+++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4899999999999999999998874321 1223334444555555544 478999999999888 67888889999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCC-Cc----cChHHHHHHHHHhC---CeEEEE
Q 027949 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESK-RA----VPTSKGQALADEYG---IKFFET 158 (216)
Q Consensus 89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~-~~----~~~~~~~~~~~~~~---~~~~~~ 158 (216)
|++|+|||+++++++..+..|...+.... ..+.|+++|+||+|+.+.. +. ...+++..++..++ ++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 99999999999999998877655443321 3479999999999986421 22 44577888888887 799999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
||++ .++.++|..+++.+..
T Consensus 162 Sa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTCS
T ss_pred eecC-ChHHHHHHHHHHHHcC
Confidence 9999 8999999998875543
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.8e-26 Score=168.96 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=123.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 86 (216)
..++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||...+. .++..+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 458999999999999999999998776555566666677777778877 789999999988764 23455554
Q ss_pred -cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 87 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
.+|++++|+|.++. .....|+..+.. .+.|+++|+||+|+.+.. ... .....++..++++++++||++|.|
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 48999999998754 455566666554 378999999999985422 122 356777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027949 166 VEEVFFSIARDIKQRL 181 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~ 181 (216)
++++|++|.+.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.3e-25 Score=188.84 Aligned_cols=163 Identities=22% Similarity=0.428 Sum_probs=126.2
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+.. +.++.+ .....+.+.+ +.+.||||+|++.+..++..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc--eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3456999999999999999999999988543 444444 4445566666 7899999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCC
Q 027949 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLN 165 (216)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 165 (216)
|+|||+++++++..+..|+..+.... ..+.|++||+||+|+.+. ....++..... ..+++++++||++|+|
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 99999999999999998887775532 247999999999998642 22222222211 1235799999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027949 166 VEEVFFSIARDIKQRLA 182 (216)
Q Consensus 166 i~~l~~~l~~~i~~~~~ 182 (216)
++++|++|.+.+.+...
T Consensus 471 i~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 471 LYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988765543
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.4e-26 Score=168.68 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=115.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 85 (216)
.++|+|+|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 379999999999999999999987643 23344555566677778887 46889999998643221 12357
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
+.+|++++|+|++++.++. ...|+..+......+.|+++|+||+|+.+.... ++...+++++++||++|.|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence 8999999999999887765 346777776665557999999999998542111 1122457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~i~~ 179 (216)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=9e-27 Score=171.72 Aligned_cols=157 Identities=24% Similarity=0.301 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 84 (216)
++|+|+|.+|+|||||+++|++..+...+.++.+.... .+.+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999877666666554433 33333 578999999 55666666777
Q ss_pred ccc-ccEEEEEEeCCCHhHHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949 85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI 153 (216)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (216)
++. ++++++++++.+..++..+ ..|... + ......+.|+++|+||+|+.+.. .+....++..++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 766 6666666666556666665 345431 1 12222478999999999986532 5567778888876
Q ss_pred e-------EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 154 K-------FFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 154 ~-------~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
+ ++++||++|.|++++|++|.+.+.+...
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 7999999999999999999998876543
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=7.7e-26 Score=174.89 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=121.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc--
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY-- 85 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~-- 85 (216)
..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+...+ ..+.+||+||...+...+ ..++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 458999999999999999999999877655666777777777777766 789999999987765432 4555
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
..+|++++|+|+++.+... .|...+.. .+.|+++|+||+|+.+.. ... .....++..++++++++||++|.|
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5799999999999876433 34444443 378999999999985422 222 236778888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIK 178 (216)
Q Consensus 166 i~~l~~~l~~~i~ 178 (216)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.5e-26 Score=164.87 Aligned_cols=150 Identities=21% Similarity=0.187 Sum_probs=106.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 87 (216)
.+|+|+|.+|+|||||++++.+..+. ....++.+.+.....+..++ ..+.+||+||...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 23344455556666777777 47889999998763 3345567889
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 166 (216)
+|++|+|+|++++.+... .++..+... .+.|+++|+||+|+.+. .+++..++ ..++ +++++||++|.|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence 999999999988533222 222222222 26899999999998653 12333344 5676 8999999999999
Q ss_pred HHHHHHHHHHH
Q 027949 167 EEVFFSIARDI 177 (216)
Q Consensus 167 ~~l~~~l~~~i 177 (216)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=2.6e-26 Score=170.10 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=106.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 81 (216)
....++|+|+|.+|+|||||+++|++..+.....++.+.......+..++ .+.+||||| .+.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44569999999999999999999998875544444444334334444444 589999999 66666667
Q ss_pred ccccccc---cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHH-HHHHhCCeEE
Q 027949 82 TAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSKGQA-LADEYGIKFF 156 (216)
Q Consensus 82 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~~ 156 (216)
..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+..... ..+++.. +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777766 9999999999876665532 2222222 368999999999986522110 1122222 2223357999
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i 177 (216)
++||++|.|++++|++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998875
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=3.3e-26 Score=176.72 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=119.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 85 (216)
.+|+|+|.+|||||||+|+|++........++.+.+.....+.+++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876666677888888888888888 5889999999876653 345566
Q ss_pred --ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949 86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (216)
Q Consensus 86 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
+.+|++|+|+|+++.+....+..++ . ..+.|+++|+||+|+.+... .......+...++++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~---~~~~pvilv~NK~Dl~~~~~--~~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL---F---ELGKPVVVALNMMDIAEHRG--ISIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH---T---TSCSCEEEEEECHHHHHHTT--CEECHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH---H---HcCCCEEEEEEChhcCCcCC--cHHHHHHHHHHcCCCEEEEECCCC
Confidence 7899999999999876554443332 2 23789999999999854221 112345577888999999999999
Q ss_pred CCHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARD 176 (216)
Q Consensus 164 ~gi~~l~~~l~~~ 176 (216)
.|++++|++|.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999876
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1e-25 Score=166.66 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=111.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (216)
.....++|+|+|.+|+|||||+++|++..+. ...++.+..........+. .+.+||+|| .+.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 3456689999999999999999999998743 2333333333333333443 577999999 5556666
Q ss_pred cccccccc---cEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-C
Q 027949 81 TTAYYRGA---MGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADEYG-I 153 (216)
Q Consensus 81 ~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~ 153 (216)
+..+++.+ |++++|+|+++.... ..+..|+... +.|+++|+||+|+.+.. .....+.+..++...+ +
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 66676665 999999999875332 3333343322 68999999999986422 2233345555555544 7
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 154 KFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 154 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.2e-24 Score=172.35 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=125.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccc----------cc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR----------TI 80 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~----------~~ 80 (216)
...-.|+|+|.+|||||||+|+|++..+.. ...+..+.......+..+ + ..+.||||||..... ..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHH
Confidence 455889999999999999999999988753 334444445555555665 5 789999999985543 45
Q ss_pred cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEE
Q 027949 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFET 158 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (216)
...+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+.. ......+....+...++ .+++++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEE
Confidence 566778999999999999987777776667766653 689999999999863 23445566677777775 789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 027949 159 SAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~ 178 (216)
||++|.|++++|++|.+.+.
T Consensus 162 SA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP 181 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999998774
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=8.7e-26 Score=175.63 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=114.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 86 (216)
+.++|+++|.+|||||||+++|++........++.+.+.....+ +. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 34899999999999999999999876544445555544444443 33 4678999999988765 34455554
Q ss_pred -cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 87 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
.+|++|+|+|+++.+.. ..|...+.. .+.|+++|+||+|+.... ... .....++..++++++++||++|.|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999886543 345444544 378999999999985322 122 345677888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDI 177 (216)
Q Consensus 166 i~~l~~~l~~~i 177 (216)
++++|++|.+.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=7.8e-26 Score=176.40 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=119.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~ 84 (216)
.++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999887666677777777777887776 56789999998766521 2223
Q ss_pred c--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
+ +.+|++|+|+|+++.+....+..++. .. +.|+++|+||+|+.+... .......+...++++++++||++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQN--IRIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTT--EEECHHHHHHHHTSCEEECCCGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhh--HHHHHHHHHHhcCCCEEEEEcCC
Confidence 2 68999999999998765544444433 33 689999999999854221 12235667788899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIK 178 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~ 178 (216)
|.|++++|++|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999877654
No 120
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=1.7e-26 Score=182.01 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=119.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (216)
||+++|..|||||||++++.++.... ...+|.+.+... + + ..+++.||||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664432 234555554432 2 2 237899999999999964 35788999999
Q ss_pred EEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH----hCCeEEEE
Q 027949 91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET 158 (216)
Q Consensus 91 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 158 (216)
+|+|||+++. +.......|+..+.... ++.|+++|+||+|+.++. +.+..+++++++.. +++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 33444444455554443 479999999999996532 23555666677775 67899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949 159 SAKTNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 159 Sa~~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
||++ .++.+.|..|++.++++...
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 9998 58999999999877665444
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=7.5e-25 Score=170.68 Aligned_cols=157 Identities=21% Similarity=0.173 Sum_probs=122.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 86 (216)
.++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++ ..+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 48999999999999999999999887666777777788888888888 5689999999877655 445555 6
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
.+|++++|+|+++.+ ....|...+.... ..|+++|+||+|+.+... ... ....+...++++++++||++|.|+
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~-~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKG-AKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHT-CCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccc-cHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 799999999998864 2333444444331 289999999999753221 111 266778888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 167 EEVFFSIARDIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~i~~~ 180 (216)
+++|++|.+.+...
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 122
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.2e-25 Score=190.59 Aligned_cols=165 Identities=24% Similarity=0.301 Sum_probs=121.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE------EEE--CCeEEEEEEEeCCCcccccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITTA 83 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~~ 83 (216)
....+||+|+|.+|||||||++++++..+...+.++.+.+..... +.. ++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999887777777776555431 112 233478999999999999999999
Q ss_pred ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
+++.+|++|+|+|+++. ..+..|+..+..... +.|+++|+||+|+.+ ...+..+....++...+++++++||++|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 99999999999999766 445667777777654 689999999999965 3455677788888888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027949 164 LNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~~~~ 181 (216)
.|+++++.+|.+.+.+..
T Consensus 193 ~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp --CTTHHHHHHHHHTCTT
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 999999999999886643
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.4e-24 Score=164.17 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=108.1
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC--CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRT 79 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~ 79 (216)
....++|+|+|.+|+|||||+++|++... .....++.+.......+.. .....+.||||||. +.+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34568999999999999999999999873 2223333333333333321 22267899999994 33444
Q ss_pred cccccccc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHH-----
Q 027949 80 ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADE----- 150 (216)
Q Consensus 80 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~----- 150 (216)
+...+++. +|++|+|+|++++.+. ....++..+.. .+.|+++|+||+|+.+.... ...+........
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 55555555 7889999999875332 22234444443 36899999999998642111 011222223333
Q ss_pred --hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 151 --YGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 151 --~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
.+++++++||++|.|++++|++|.+.+...
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 347899999999999999999999988654
No 124
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=3.8e-23 Score=166.95 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=123.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 83 (216)
...++|+|+|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3458999999999999999999998775433334444455555555565 6789999999754221 1123
Q ss_pred ccccccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949 84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+.+.. ..+....++...+++++++||+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence 445699999999998876 66777778887776554 78999999999985421 2244556666778999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027949 162 TNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~~ 181 (216)
+|+|+++++++|.+.+....
T Consensus 319 ~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999886653
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=1.6e-23 Score=174.16 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=98.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 85 (216)
.++|+|+|.+|+|||||+|+|++.+. .....++.+.+.....+.+++ +.+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 48999999999999999999998764 244556666677777788888 789999999987655433 4467
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
+.+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+.+... . ....+......+++++||++|.|
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCCCC
Confidence 89999999999999877653333332222222 689999999999865322 1 12333333237899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIK 178 (216)
Q Consensus 166 i~~l~~~l~~~i~ 178 (216)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=7.7e-24 Score=175.23 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=114.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (216)
+..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.||||||+. .|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999988754 34455666666666777887 468999999973 333322
Q ss_pred c-cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHH----HhCCeE
Q 027949 82 T-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG-QALAD----EYGIKF 155 (216)
Q Consensus 82 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (216)
. .+++.+|++++|+|++++.++... .|+..+.. .+.|+++|+||+|+.+... ...++. ..+.. ..++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCT-THHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcch-HHHHHHHHHHHHhcccCCCCCE
Confidence 2 367889999999999998776664 45555543 3789999999999865322 222222 22222 235799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949 156 FETSAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 156 ~~~Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
+++||++|.|++++|+++.+.+.+..
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEecccCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887643
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=2.8e-23 Score=163.76 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=108.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 84 (216)
...+|+|+|.+|+|||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 34689999999999999999999987752 3333334344334445555 7899999999765 33445667
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hC-CeEEEEecC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YG-IKFFETSAK 161 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~ 161 (216)
++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+.... ....... .+ .+++++||+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTT
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCC
Confidence 88999999999998764333 2333 3444332 36899999999998642210 1222222 23 579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDI 177 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i 177 (216)
+|.|+++++++|.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 156 DERQVAELKADLLALM 171 (301)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998765
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=3.3e-23 Score=172.34 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=117.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (216)
....++|+++|.+|+|||||+++|++... .....++.+.+.....+..++ ..+.|||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 34569999999999999999999997753 334445556566566777777 4789999999 4555554
Q ss_pred cc-cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCe
Q 027949 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIK 154 (216)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 154 (216)
.. .+++.+|++|+|+|+++... .....|...+.. .+.|+++|+||+|+.+. .....++..+.+... +++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence 44 36788999999999987543 222344444443 36899999999998653 334445555555544 479
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 155 FFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 155 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
++++||++|.|++++|++|.+.+.+...
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998876543
No 129
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=9.9e-24 Score=168.71 Aligned_cols=158 Identities=20% Similarity=0.248 Sum_probs=120.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---cc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR---GA 88 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 88 (216)
.+|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||..+ +..+...|++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999987654333344444555556666542 4789999999643 3445555655 49
Q ss_pred cEEEEEEeCCC---HhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEecC
Q 027949 89 MGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK 161 (216)
Q Consensus 89 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 161 (216)
+++|+|+|+++ .+++..+..|+..+..+.. ...|+++|+||+|+.+. .+....+...+. ++++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence 99999999998 7788888888888887643 47899999999998542 134556666665 689999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~ 179 (216)
++.|+++++.+|.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999988754
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=5.2e-24 Score=160.52 Aligned_cols=143 Identities=17% Similarity=0.292 Sum_probs=104.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc--
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-- 87 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 87 (216)
...++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 456899999999999999999999987653 2333333221 23578999999999998888888877
Q ss_pred --ccEEEEEEeCC-CHhHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHHHHhCCe
Q 027949 88 --AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDESKRAVP------TSKGQALADEYGIK 154 (216)
Q Consensus 88 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~ 154 (216)
+|++|+|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.+... .. .+++..++...++.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP-PSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC-HHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888888777654 345799999999999965332 12 34456666677789
Q ss_pred EEEEecCCCCC
Q 027949 155 FFETSAKTNLN 165 (216)
Q Consensus 155 ~~~~Sa~~~~g 165 (216)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998764
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=5.3e-23 Score=171.23 Aligned_cols=153 Identities=24% Similarity=0.264 Sum_probs=116.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------ccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTI--------TTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~ 85 (216)
++|+|+|.+|+|||||+|+|++.+.. ....++++.+.....+.+++ ..+.+|||||.. .+... ...++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 89999999999999999999988643 44556666777777888887 678999999987 55421 24567
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
+.+|++|+|+|++++.++.... ++..+ .+.|+++|+||+|+.+. ...+++..+.. .+++++++||++|.|
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 8899999999999887665532 22222 26899999999999642 23344444332 346899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~i~~~ 180 (216)
+++++++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987753
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=1.3e-22 Score=162.84 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=104.0
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHhc-CCC
Q 027949 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~ 120 (216)
.....+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..+
T Consensus 183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 3345566665 889999999999999999999999999999999999 457888888888876532 247
Q ss_pred CcEEEEEeCCCCCCCC--------------CccChHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 121 VNKILVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 121 ~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
.|++||+||+|+.+.. .....+++..++. ..++.+++|||+++.||+++|.++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 9999999999984311 1245677777776 24578999999999999999999999
Q ss_pred HHHHHh
Q 027949 176 DIKQRL 181 (216)
Q Consensus 176 ~i~~~~ 181 (216)
.+.+..
T Consensus 341 ~i~~~~ 346 (353)
T 1cip_A 341 VIIKNN 346 (353)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998653
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=5.7e-22 Score=159.96 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~ 87 (216)
.|+|+|.+|+|||||+|+|++..+.....++.+.+.....+.+++ ..+.+|||+|.-. +... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 499999999999999999999876544455566667777888888 5789999999621 2222 224678
Q ss_pred ccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEecCC
Q 027949 88 AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKT 162 (216)
Q Consensus 88 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~ 162 (216)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+.+.........+..++..+ +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 55555556655555444578999999999986422111112233344554 24789999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~~~ 180 (216)
|.|+++++++|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999999877653
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=8.8e-24 Score=173.16 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=116.2
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------T 82 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~ 82 (216)
.....++|+|+|..|+|||||+++|++..+. ....++.+.+.....+.+.+. ..+.+|||||+..+..+. .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999998763 344555666677777777664 278999999998766542 3
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.+++.+|++|+|+|+...+ ....|+..+... +.|+++|+||+|+.+.... +....+...++++++++||++
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCC
Confidence 4678899999999994333 334566555554 6899999999998654322 556666777789999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027949 163 NLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 163 ~~gi~~l~~~l~~~i~~~ 180 (216)
|.|++++|++|.+.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTSTTTHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHhhhhh
Confidence 999999999999888544
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.6e-22 Score=169.00 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=113.0
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC-------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (216)
....++|+++|..++|||||+++|++.. ...+..++.+.+.....+.+++ ..+.+|||||++.|.......
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3456999999999999999999999876 2233444455555555566666 789999999999988888888
Q ss_pred cccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHh----CCeEE
Q 027949 85 YRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEY----GIKFF 156 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~ 156 (216)
+..+|++|+|+|+++ +++.+.+. .+.. .+.|+++|+||+|+.+... ....+++..++... +++++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 899999999999987 44444332 2222 2688899999999864211 12234455555554 57999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027949 157 ETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
++||++|+|+++++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999998875
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2.3e-22 Score=166.53 Aligned_cols=152 Identities=23% Similarity=0.323 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 85 (216)
.+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987753 35566777777788888888 5688999999653 233456678
Q ss_pred ccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHhCC-eEEEEecC
Q 027949 86 RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAK 161 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~ 161 (216)
+.+|++|+|+|+.++.+.. .+..|+. .. +.|+++|+||+|+.+. . .... .++. .+++ .++++||.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---KS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---HH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 9999999999998754432 2333332 21 6899999999997421 0 1222 3343 4566 78999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027949 162 TNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~ 180 (216)
+|.|+++++++|.+.+.+.
T Consensus 149 ~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 9999999999999988653
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=2.8e-21 Score=158.37 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEE-------EEE---------EE---CCeEEEEEEEeCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI-------RTI---------EL---DGKRIKLQIWDTA 72 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~i~D~~ 72 (216)
....++|+++|.+|+|||||+++|++............ .... ..+ .. ......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34559999999999999999999998543321100000 0000 000 00 1123689999999
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHh
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEY 151 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 151 (216)
|++.|.......+..+|++|+|+|++++.++.....++..+.... ..|+++|+||+|+.+.... ...+++..+....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999998888888999999999999998766666677666555443 3589999999998652211 1112233333222
Q ss_pred ---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 152 ---GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 152 ---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 478999999999999999999987653
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=1.9e-22 Score=167.17 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=104.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 85 (216)
.++|+|+|.+|+|||||+|+|++.+.. ....++.+.+.....+.+++ ..+.+|||||...+...+ ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 489999999999999999999987543 34445666666666677788 678999999976544332 3357
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 165 (216)
+.+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+.+..... ....+. .+.+++++||++|.|
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~---~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT---SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST---TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH---HHHHhc--cCCcEEEEECCCCCC
Confidence 88999999999998765444 33444442 36999999999986532211 111111 346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~i~~ 179 (216)
+++++++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 139
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=1.1e-21 Score=157.92 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=95.4
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHh-cCCCCc
Q 027949 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQH-ASDNVN 122 (216)
Q Consensus 54 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~-~~~~~p 122 (216)
...+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..++.....|+..+... ...+.|
T Consensus 193 ~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 193 EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 34556665 789999999999999999999999999999999999 67899988888887654 234799
Q ss_pred EEEEEeCCCCCCCC--------------C-ccChHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949 123 KILVGNKADMDESK--------------R-AVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 123 ~ivv~nK~Dl~~~~--------------~-~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
++||+||+|+.+.. . ....+++..++. ..++.+++|||+++.||+++|.++.+.
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 99999999985311 1 145666766651 345789999999999999999999999
Q ss_pred HHHHhh
Q 027949 177 IKQRLA 182 (216)
Q Consensus 177 i~~~~~ 182 (216)
+.+..-
T Consensus 351 i~~~~l 356 (362)
T 1zcb_A 351 ILHDNL 356 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=2e-21 Score=149.23 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=109.2
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccc--eeeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~ 81 (216)
....++|+|+|.+|+|||||+|+|++........+. .+.......+.+++ ..+.||||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 345699999999999999999999998765433222 44445556667777 678999999962 222222
Q ss_pred ccc----cccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----ChHHHHHHHHHh
Q 027949 82 TAY----YRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-----PTSKGQALADEY 151 (216)
Q Consensus 82 ~~~----~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~ 151 (216)
..+ .+.+|++|+|+|+++.... ..+..++..+......+.|++|++||.|+.+..... ..+.++.+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 3889999999999863221 222333333322222267999999999985422111 114467777888
Q ss_pred CCeEEEEecCC-----CCCHHHHHHHHHHHHHHH
Q 027949 152 GIKFFETSAKT-----NLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 152 ~~~~~~~Sa~~-----~~gi~~l~~~l~~~i~~~ 180 (216)
+..++.+++.. +.|+++|+..|.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88787777655 578999999998877653
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=9.8e-22 Score=152.09 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=109.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC-CCCccccc-eeeeEEEEEEEECCeEEEEEEEeCCCcccccccc---------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------- 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 81 (216)
...++|+|+|.+|||||||+++|++.. +.....++ .+.......+.+++ ..+.||||||...+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 456999999999999999999999877 33333343 45556666677777 678999999976543322
Q ss_pred --ccccccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCccCh-------HHHHHHHHH
Q 027949 82 --TAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGN-KADMDESKRAVPT-------SKGQALADE 150 (216)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~~-------~~~~~~~~~ 150 (216)
..+++.+|++|+|+|+++... ...+..++..+.... ...|.++|+| |+|+.+. .... ..+..+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHH
Confidence 225688999999999986322 122333333332211 1356666666 9998642 1111 234445555
Q ss_pred hCCe---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 151 YGIK---F--FETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 151 ~~~~---~--~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
.+.. + +++||++|.|++++|.+|.+.+...
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 5532 2 7899999999999999999988764
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.3e-21 Score=161.79 Aligned_cols=156 Identities=18% Similarity=0.108 Sum_probs=108.9
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIEL 59 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 59 (216)
.....++|+++|.+++|||||+++|+...- ..+..++.+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345679999999999999999999965321 1122245566666666666
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027949 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KILVGNKADM 132 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 132 (216)
++ ..+.||||||++.|.......+..+|++|+|+|+++... + ......+..+.. .+.| +++|+||+|+
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 66 689999999999998888888999999999999987532 1 111222222222 2566 8999999998
Q ss_pred CCCC-----CccChHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q 027949 133 DESK-----RAVPTSKGQALADEYG------IKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 133 ~~~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 171 (216)
.... .....+++..++...+ ++++++||++|.|++++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 1112234445555544 5799999999999999765
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=1.5e-21 Score=154.63 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=102.1
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCC
Q 027949 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~ 120 (216)
.....+..++ +.+.+||++|++.++..|..++++++++|+|+|++ +..++.....|+..+.... ..+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 4455566666 89999999999999999999999999999999665 5677888878887776532 247
Q ss_pred CcEEEEEeCCCCCCCC---------------CccChHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 121 VNKILVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 121 ~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
.|++|++||+|+.+.. ...+.+++..++. ..++.+++|||+++.||+.+|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 9999999999984321 1346677777743 34578899999999999999999999
Q ss_pred HHHHHh
Q 027949 176 DIKQRL 181 (216)
Q Consensus 176 ~i~~~~ 181 (216)
.+++..
T Consensus 315 ~Il~~~ 320 (327)
T 3ohm_A 315 TILQLN 320 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998754
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=9.6e-23 Score=168.68 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=100.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 86 (216)
.+|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+.+++ ..+.+|||||.. .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987654 23445555555555666666 578999999975 45566777889
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCC
Q 027949 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 165 (216)
.+|++|+|+|+.++.+... .++..+.. ..+.|+++|+||+|+.+..... .++. .+++ .++++||.+|.|
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~-----~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI-----YDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC-----CSSG-GGSSCCCEECBTTTTBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH-----HHHH-HcCCCCeEEEeCcCCCC
Confidence 9999999999988655433 23333222 2378999999999985422111 1122 3454 789999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027949 166 VEEVFFSIARDIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~i~~ 179 (216)
+++++++|.+.+.+
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999887753
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=3.8e-21 Score=157.85 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=103.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeee--EEEEEEEE-------------C--C----eEEEEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGID--FKIRTIEL-------------D--G----KRIKLQI 68 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~i 68 (216)
...++|+++|..++|||||+++|++... ..+..++.+.+ +....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3459999999999999999999996432 23333422322 22222211 1 1 1368999
Q ss_pred EeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHH
Q 027949 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSK 143 (216)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~ 143 (216)
||+||++.|.......+..+|++|+|+|+++ +++.+.+.. +... ...|+++|+||+|+.+.... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999887777777788999999999985 444444332 2222 13589999999999754321 23455
Q ss_pred HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 144 GQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 144 ~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+..++.. .+++++++||++|+|+++++++|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666654 3579999999999999999999987654
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=9.5e-21 Score=144.80 Aligned_cols=165 Identities=17% Similarity=0.177 Sum_probs=109.7
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccc--ceeeeEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RF 77 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~ 77 (216)
.....++|+|+|.+|+|||||+++|++..+.....+ +.+.......+.+++ ..+.||||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999887654444 455566666777777 578999999943 33
Q ss_pred ccccccccccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----ChHHHHHHHHH
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-----PTSKGQALADE 150 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 150 (216)
.......++.+|++|+|+|+++... ...+..+...+.... ..|++||+||+|+.+..... ..+.++.++..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4444555678899999999876433 222222222222221 36999999999985432111 12467788888
Q ss_pred hCCeEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027949 151 YGIKFFETSAKTN-----LNVEEVFFSIARDIKQ 179 (216)
Q Consensus 151 ~~~~~~~~Sa~~~-----~gi~~l~~~l~~~i~~ 179 (216)
.+..++.++...+ .++.+++..+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888888877644 6888888888777654
No 147
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=1e-21 Score=157.55 Aligned_cols=120 Identities=14% Similarity=0.214 Sum_probs=94.1
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKILVGNKA 130 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 130 (216)
..+.+.+||++|++.++..|..++++++++|+|||++ +..++.....|+..+.... ..+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788999989888876542 2479999999999
Q ss_pred CCCCCCCc--------------------cChHHHHHHHHH----------------hCCeEEEEecCCCCCHHHHHHHHH
Q 027949 131 DMDESKRA--------------------VPTSKGQALADE----------------YGIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 131 Dl~~~~~~--------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
|+.+.... ...+++..++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98432110 013556666432 124568999999999999999999
Q ss_pred HHHHHHh
Q 027949 175 RDIKQRL 181 (216)
Q Consensus 175 ~~i~~~~ 181 (216)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=2.8e-21 Score=152.49 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=109.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 84 (216)
..+|+|+|.+|+|||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||.. .+.......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3579999999999999999999987532 2233333333344455555 688999999986 234445677
Q ss_pred cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
++.+|++++|+|+++ +.....++..... ..+.|+++|+||+|+.+ ......+.+..+...+++ .++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 889999999999976 2222233322222 23689999999999854 122233445556555665 7999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027949 164 LNVEEVFFSIARDIK 178 (216)
Q Consensus 164 ~gi~~l~~~l~~~i~ 178 (216)
.|+++++++|.+.+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999887553
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.3e-21 Score=164.87 Aligned_cols=158 Identities=25% Similarity=0.320 Sum_probs=111.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 75 (216)
...+|+|+|..++|||||+++|+... +.. +...+.+.......+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46899999999999999999998632 110 01112222222233333 4556899999999999
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-- 153 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 153 (216)
.|...+...++.+|++|+|+|+++.........|...+. .+.|+++|+||+|+.++. ..+....+...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCc
Confidence 998888889999999999999998776666666665543 268999999999996532 23334555566665
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 154 -KFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 154 -~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.++++||++|.|+++++++|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999988764
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.8e-22 Score=157.51 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-c-------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc-------
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-F-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 76 (216)
..+.++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45679999999999999999999887665432 2 45555555555555566667999999999632
Q ss_pred ccccc-------cccc-------------ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 77 FRTIT-------TAYY-------------RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 77 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
+..+. ..++ ..+|+++|+++.+.......-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22211 1222 237789999976652211122233444433 68999999999975321
Q ss_pred C-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 137 R-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
. ....+.+.......+++++.+|+.+++|+++++.+|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 1112334555566789999999999999999999987654
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=7e-21 Score=157.65 Aligned_cols=161 Identities=20% Similarity=0.139 Sum_probs=107.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (216)
+..++|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34599999999999999999999987642 334455555666677788884 67899999974332211
Q ss_pred --ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HH----HHHhCCe
Q 027949 82 --TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-AL----ADEYGIK 154 (216)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~ 154 (216)
...++.+|++++++|+.+..+.... .+...+.. .+.|+++|+||+|+.+.. ....++.. .+ ....+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCc
Confidence 2345678999999999876554432 22222322 278999999999986422 22222222 22 2223479
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 155 FFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 155 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
++++||++|.|++++|+.+.+.+.+.
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999877665
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=3.1e-21 Score=158.51 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeeeEEEEEEEE---------------C--C----eEEEE
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIEL---------------D--G----KRIKL 66 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~ 66 (216)
.....++|+++|..++|||||+++|++... ..+..++.+.+.......+ . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346679999999999999999999996432 2333343333322222211 0 1 13689
Q ss_pred EEEeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccCh
Q 027949 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPT 141 (216)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~ 141 (216)
.|||+||++.|.......+..+|++|+|+|+++ +++.+.+.. +.... ..|+++|+||+|+.+... ....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 999999999887777777788999999999985 344444332 22221 357899999999865321 1122
Q ss_pred HHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 142 SKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 142 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
+++..++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 344555543 3579999999999999999999987654
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=4.4e-21 Score=162.99 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=113.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
+...+|+|+|..++|||||+++|+... +.. +...+.+.......+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997631 110 00111121111122222 455689999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI- 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (216)
..|...+...++.+|++|+|+|+++.........|..... .+.|+++|+||+|+.++. .......+...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence 9998888888999999999999999877777766665443 278999999999986532 22334455555665
Q ss_pred --eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 154 --KFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 154 --~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.++++||++|.|+++++++|++.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4999999999999999999988764
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=3.2e-23 Score=173.99 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=115.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+ ++ ..+.||||||++.|..++..++..+|++|+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 378999999999999999999987765555555555554444444 33 478899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh--CCeEEEEecCCCCCHHH
Q 027949 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEE 168 (216)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 168 (216)
|+|+++.........| ..+. ..+.|+++|+||+|+.+............+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986544333222 2222 237899999999998654333223333222 1112 25899999999999999
Q ss_pred HHHHHHHHHH
Q 027949 169 VFFSIARDIK 178 (216)
Q Consensus 169 l~~~l~~~i~ 178 (216)
++++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=4.6e-21 Score=158.51 Aligned_cols=155 Identities=19% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC---Cc---------cc---------------------cceeeeEEEEEEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TS---------FI---------------------TTIGIDFKIRTIE 58 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~---------~~---------------------~~~~~~~~~~~~~ 58 (216)
....++|+++|..++|||||+++|++.... .. .. .+.+.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356699999999999999999999865310 00 00 1122222333344
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
.++ ..+.||||||++.|......++..+|++|+|+|+++... .....++..+.... ..|+++|+||+|+.+....
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHH
Confidence 444 678999999999988878888899999999999988642 22333333333321 2368999999998652211
Q ss_pred ---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q 027949 139 ---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 171 (216)
...++...++..++ ++++++||++|.|+++++.
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 12345566666676 6899999999999998544
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=4.5e-22 Score=165.51 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=100.0
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCC--------cccccccc
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTIT 81 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~ 81 (216)
......+|+|+|.+|||||||+|+|++..+. ....++.+.+.....+.+.+ ..+.+||||| .+.+....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHH
Confidence 3344579999999999999999999987654 23334444444444544455 6889999999 55666777
Q ss_pred ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
..+++.+|++|+|+|..+..+. ...++..+... .+.|+++|+||+|+.+... ...++. .++. .++++||
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~-----~~~e~~-~lg~~~~~~iSA 166 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGFGEPYPISG 166 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCT
T ss_pred HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh-----hHHHHH-HcCCCceEEeec
Confidence 8888999999999998764322 22333333222 4789999999999753211 111111 2332 6789999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~ 178 (216)
.+|.|++++++++.+.+.
T Consensus 167 ~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTCTTHHHHHHHHHTTGG
T ss_pred ccccchHHHHHHHHhhcc
Confidence 999999999999987664
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=4.3e-20 Score=146.78 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=98.9
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCCC
Q 027949 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNV 121 (216)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~ 121 (216)
....+.+++ +.+.+||++|++.++..|..++++++++|+|||++ +..++.....|+..+.... ..+.
T Consensus 152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 344455555 88999999999999999999999999999999998 6788888888887776543 3579
Q ss_pred cEEEEEeCCCCCCCC--------------CccChHHHHHHHHH-h--------------------------CCeEEEEec
Q 027949 122 NKILVGNKADMDESK--------------RAVPTSKGQALADE-Y--------------------------GIKFFETSA 160 (216)
Q Consensus 122 p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa 160 (216)
|++|++||+|+.... .....+++..++.. . .+.+++|||
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 999999999984310 11234555544432 2 367899999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027949 161 KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 161 ~~~~gi~~l~~~l~~~i~~ 179 (216)
+++.+|+.+|..+.+.+++
T Consensus 310 ~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999998
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=1.9e-20 Score=156.71 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=100.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+|+|||||+++|+.... ..+..++.+.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4569999999999999999999976511 111122334444444455554
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+.+.||||||++.|......+++.+|++|+|+|++++..+. .....+..+... ...|++||+||+|+.+.
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence 78999999999999988889999999999999999875432 122222222222 13569999999998652
Q ss_pred CCcc---ChHHHHHHHHHh-----CCeEEEEecCCCCCHHHH
Q 027949 136 KRAV---PTSKGQALADEY-----GIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 136 ~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 169 (216)
.... ..+++..+.... +++++++||++|+|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2111 122333344433 368999999999999864
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=4.7e-20 Score=149.61 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=100.6
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHhc-CCCCcE
Q 027949 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK 123 (216)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ 123 (216)
..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++..+..|+..+.... ..+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4455666 889999999999999999999999999999999999 889999999998887652 357999
Q ss_pred EEEEeCCCCCCCCC--cc---------------------------ChHHHHHHH-----HH--------hCCeEEEEecC
Q 027949 124 ILVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YGIKFFETSAK 161 (216)
Q Consensus 124 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 161 (216)
+||+||+|+..... .. ..+++..|+ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843211 01 134455553 22 24677899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 027949 162 TNLNVEEVFFSIARDIKQRLAD 183 (216)
Q Consensus 162 ~~~gi~~l~~~l~~~i~~~~~~ 183 (216)
++.||+++|.++.+.+++...+
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=2.5e-20 Score=156.92 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=86.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCC------------------CC----CccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS------------------FT----TSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
+...+|+|+|.+|+|||||+++|+... +. ....++.+.......+.+.+ +.+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 356899999999999999999996211 00 00112333444455666776 7899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|||+..|...+..+++.+|++|+|+|+++.........|. .+.. .+.|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 9999999988899999999999999999876655554443 3332 3789999999999854
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.9e-21 Score=140.00 Aligned_cols=113 Identities=17% Similarity=0.323 Sum_probs=86.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc--
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-- 87 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 87 (216)
...++|+|+|.+|||||||+++|.+..+.. ...++.+. .+ ..+.+.+||+||...+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DY--DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------ee--cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999987543 12222221 11 23678999999999888877777766
Q ss_pred --ccEEEEEEeCC-CHhHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027949 88 --AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDE 134 (216)
Q Consensus 88 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~ 134 (216)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 899999988888776554 334799999999999865
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-21 Score=156.80 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=89.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-Cccc--------cceeeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (216)
...++|+|+|.+|+|||||+++|++.... ..+. ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 2221 34343333444455666678999999998 55
Q ss_pred cccccc-------cccccc-------------cEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 77 FRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+..++. .+++.+ |+++|+++.. ..++..+. .++..+ ..+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 665554 444332 3455555532 22333333 233333 347899999999998642
Q ss_pred CCccCh--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949 136 KRAVPT--SKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182 (216)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 182 (216)
..+.. +.+..++..++++++++||+++.+ ++.|.++.+.+.+...
T Consensus 190 -~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 190 -KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp -HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred -HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 22222 456666677789999999999999 9999999998876543
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=4.5e-21 Score=158.57 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=103.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC--CCCCc-----------------------------cccceeeeEEEEEEEECCe
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDGK 62 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 62 (216)
..++|+++|..++|||||+++|+.. .+... ..++.+.+.....+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 4599999999999999999999864 22211 012333334334444444
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHH-------HHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-------IRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+.+.||||||+..|......+++.+|++|+|+|+++ .+|+....| +..+... ...|+++++||+|+.+.
T Consensus 84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCc
Confidence 689999999999998888889999999999999998 556543322 2222211 12468999999998652
Q ss_pred CC-----ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q 027949 136 KR-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEVFF 171 (216)
Q Consensus 136 ~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 171 (216)
.. ....+++..++..++ ++++++||++|.|+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 11 122355666776665 6899999999999986654
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=8e-20 Score=155.57 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=106.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-----------C-----eEEEEEEEeCCCccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----------G-----KRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~i~D~~G~~~~~ 78 (216)
.++|+|+|.+++|||||+++|++..+......+.+.+.....+.++ + ....+.||||||+..|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 3789999999999999999998765432211111111111111110 0 11258999999999999
Q ss_pred cccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------Ch--
Q 027949 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV------------PT-- 141 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~-- 141 (216)
.++...++.+|++|+|+|+++ +.++..+.. +.. .+.|+++++||+|+.+..... ..
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 999888999999999999998 666554432 222 378999999999986421100 00
Q ss_pred -H-------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949 142 -S-------KGQALADEYG---------------IKFFETSAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 142 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
+ +......+.+ ++++++||++|.|+++++++|...+....
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111111211 38999999999999999999998776443
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=1.6e-20 Score=154.03 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=102.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC--------CCCCc---------cccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
...++|+++|.+++|||||+++|++. .+... ...+.+.+.....+...+ ..+.||||||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChH
Confidence 45699999999999999999999873 11110 122333333333344444 678999999999
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++|+|+|+++... .....++..+... +.| +++|+||+|+.+... ....+++..++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 988878888899999999999988643 3334455444433 678 889999999864211 111234556666655
Q ss_pred -----CeEEEEecCCCCC
Q 027949 153 -----IKFFETSAKTNLN 165 (216)
Q Consensus 153 -----~~~~~~Sa~~~~g 165 (216)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999987
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=3.5e-20 Score=151.59 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=106.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCC-------CCC---------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGS-------FTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+++|..++|||||+++|++.. +.. +...+.+.+.....+..++ ..+.||||||++.|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHHH
Confidence 4899999999999999999998731 110 0122233333333333333 678999999999888
Q ss_pred cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC---
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG--- 152 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 152 (216)
......+..+|++|+|+|+++....... ..+..+... +.| +++++||+|+.+... ....+++..++..++
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 7788888999999999999885432222 222333322 678 689999999864211 112245566666665
Q ss_pred --CeEEEEecCCCCC----------HHHHHHHHHHHH
Q 027949 153 --IKFFETSAKTNLN----------VEEVFFSIARDI 177 (216)
Q Consensus 153 --~~~~~~Sa~~~~g----------i~~l~~~l~~~i 177 (216)
++++++||++|.| +++++++|.+.+
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 777777776654
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=5.3e-22 Score=165.34 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=107.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
..+|+|+|..++|||||+++|.+..+.....++.+.+.....+.+++ ..+.||||||++.|..++...+..+|++|+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 37899999999999999999988655444434444333333444455 4789999999999999998889999999999
Q ss_pred EeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH---HHHHHHhC--CeEEEEecCCCCCH
Q 027949 95 YDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG---QALADEYG--IKFFETSAKTNLNV 166 (216)
Q Consensus 95 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~~Sa~~~~gi 166 (216)
+|+++. ++...+ ..+.. .+.|+++++||+|+.+.........+ ..+...++ ++++++||++|.|+
T Consensus 82 Vda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred eecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 999873 333332 22222 36899999999999643211100000 00112222 68999999999999
Q ss_pred HHHHHHHHH
Q 027949 167 EEVFFSIAR 175 (216)
Q Consensus 167 ~~l~~~l~~ 175 (216)
++++++|..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999999864
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=3e-20 Score=150.26 Aligned_cols=147 Identities=11% Similarity=0.080 Sum_probs=107.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|.+++|||||+++|+ ..+.+.+.....+.+++ ..+.+|||||++.|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 23333344444455555 579999999999887777777899999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCccC--hHHHHHHHHHhC---CeEEE--EecCC---CC
Q 027949 97 VTDESSFNNIRNWIRNIEQHASDNVNK-ILVGN-KADMDESKRAVP--TSKGQALADEYG---IKFFE--TSAKT---NL 164 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~ 164 (216)
.. ..+.....++..+... +.|. ++++| |+|+ +. .... .+++..++...+ +++++ +||++ +.
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 43 3334445555444433 5677 88899 9998 42 1111 244555554443 69999 99999 99
Q ss_pred CHHHHHHHHHHHHHHH
Q 027949 165 NVEEVFFSIARDIKQR 180 (216)
Q Consensus 165 gi~~l~~~l~~~i~~~ 180 (216)
|+++++++|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999887653
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=5.7e-21 Score=159.11 Aligned_cols=157 Identities=17% Similarity=0.098 Sum_probs=92.3
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------ccccceeeeEEEEEEEEC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (216)
....++|+++|..++|||||+++|+.. .+.. +...+.+.+.....+.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 356799999999999999999999752 1110 011222333333345555
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027949 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESK 136 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 136 (216)
+ ..+.||||||++.|.......+..+|++|+|+|+++.. +|....++...+......+.| ++||+||+|+.+..
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 5 68899999999999888888889999999999999863 221111122112111122677 89999999985421
Q ss_pred C-----ccChHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q 027949 137 R-----AVPTSKGQALADEY-------GIKFFETSAKTNLNVEEVF 170 (216)
Q Consensus 137 ~-----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~ 170 (216)
. .....++..++... +++++++||++|.|+++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 11223456666655 3579999999999998876
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=7.6e-21 Score=158.02 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=103.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------ccccceeeeEEEEEEEECCe
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDGK 62 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 62 (216)
..++|+++|.+++|||||+++|++. .+.. +...+.+.+.....+..++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~- 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence 4699999999999999999999864 1110 0012334444444455555
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 027949 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVN-KILVGNKADMDES 135 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 135 (216)
..+.||||||++.|.......+..+|++|+|+|+++... |. .....+..+.. .+.| ++||+||+|+.+.
T Consensus 85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence 689999999999988888888999999999999987632 21 22222222222 2455 8999999998631
Q ss_pred CC---ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949 136 KR---AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 136 ~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 169 (216)
.. ....+++..++..++ ++++++||++|.|++++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 122344556666665 68999999999999765
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1e-19 Score=136.10 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 81 (216)
.....+|+|+|++|||||||+++|++..+.....++.+.......+.+++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34458999999999999999999998764333344444333333444433 467899999742 22222
Q ss_pred cccc---ccccEEEEEEeCCCHhHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhC--C
Q 027949 82 TAYY---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYG--I 153 (216)
Q Consensus 82 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~--~ 153 (216)
..++ +.++++++++|+.++.+... +..|+ .. .+.|+++|+||+|+.+... ......+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2333 46899999999988654332 22232 21 2689999999999754211 111344555555554 5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 154 KFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 154 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
.++++||+++.|+++++++|.+.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999988654
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.1e-20 Score=157.57 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=104.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-------------------------------ccceeeeEEEEEEEECC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 61 (216)
...++|+|+|.+|+|||||+++|++....... .++.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999876322111 13444444455555555
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+.+.||||||++.|.......++.+|++|+|+|++++... ......+..+... ...|++||+||+|+.+.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccch
Confidence 6889999999999988888899999999999999875310 1111111112211 12458999999998652
Q ss_pred CCc---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949 136 KRA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEV 169 (216)
Q Consensus 136 ~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 169 (216)
... .....+..++...+ ++++++||++|.|++++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 111 11233444444444 58999999999999977
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=3.1e-20 Score=158.43 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCccccceeeeEEEEEEEEC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (216)
....++|+|+|.+++|||||+++|+... ...+..++.+.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567999999999999999999996421 011113344444444444444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 027949 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (216)
+ ..+.||||||+..|.......+..+|++|+|+|++++. .+ ......+..+... +.| ++||+||+|+.
T Consensus 254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 4 78899999999999888888899999999999998532 11 1111111222222 555 89999999986
Q ss_pred CCCCcc---ChHHHHHHH-HHhC-----CeEEEEecCCCCCHH
Q 027949 134 ESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE 167 (216)
Q Consensus 134 ~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~ 167 (216)
+..... ...++..+. ...+ ++++++||++|.|++
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 422111 123334444 3344 379999999999998
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=5.9e-20 Score=144.70 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=100.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc------cccce----------------------eee-------------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTI----------------------GID------------- 51 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~----------------------~~~------------- 51 (216)
...++|+|+|.+|+|||||+|+|++..+... ..++. +.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999876421 11220 000
Q ss_pred ----------EEEEEEEECCeEEEEEEEeCCCcc-------------ccccccccccccccEEE-EEEeCCCHhHHHHHH
Q 027949 52 ----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNIR 107 (216)
Q Consensus 52 ----------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~ 107 (216)
.....+...+ ...+.||||||.. .+..+...+++.++.+| +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000011110 2578999999964 23445666777888666 799998754433333
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH--hC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 108 NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
.++..+. ..+.|+++|+||+|+.+... ...+.+...... .+ .+++++||++|.|+++++++|.+.-
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3444332 34789999999999865322 122222210011 13 3688999999999999999998743
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=5e-19 Score=157.70 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=105.8
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC-------CC---------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|.+++|||||+++|++.. +. .+...+.+.+.. .+.++.....+.||||||++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva--~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS--HVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCS--CEEEECSSCEEEEEECCCHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEE--EEEEcCCCEEEEEEECCChH
Confidence 3456999999999999999999998631 00 001112222221 22233333688999999999
Q ss_pred ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC
Q 027949 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA--VPTSKGQALADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++|+|+|+++.... ....++..+... +.| ++||+||+|+.+.... ...+++..++...+
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9888888888999999999999885322 223333334332 678 7899999998642111 12245666666665
Q ss_pred -----CeEEEEecCCC--------CCHHHHHHHHHHHH
Q 027949 153 -----IKFFETSAKTN--------LNVEEVFFSIARDI 177 (216)
Q Consensus 153 -----~~~~~~Sa~~~--------~gi~~l~~~l~~~i 177 (216)
++++++||++| .|+++++++|.+.+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 45777777766543
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.1e-18 Score=142.53 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (216)
.|+|+|++|||||||+++|++........+..+.......+..++ ...+.+||+||... +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998754222223333344455555553 24678999999743 22222233 34689
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
.+++++|++ ...+..+..+...+..... ...|.++|+||+|+... ...+.+.......++.++.+||++++|++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999999997 4555666666555544321 14789999999998542 23344445555567899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027949 168 EVFFSIARDIKQRLA 182 (216)
Q Consensus 168 ~l~~~l~~~i~~~~~ 182 (216)
+++++|.+.+.+...
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=3.4e-18 Score=132.34 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=85.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------ 86 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 86 (216)
..++|+|+|.+|+|||||+++|++.... ....+..+.......+.+++ ..+.||||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4699999999999999999999998753 22333444455556667777 68999999999877655444443
Q ss_pred ---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027949 87 ---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKILVGNKADMDE 134 (216)
Q Consensus 87 ---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~ 134 (216)
.+|++++|++++..........|+..+......+ .|+++|+||+|+.+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 7899999999876542122235666665544322 48999999999854
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1e-17 Score=145.38 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCC--C------CC----------ccccceeeeEEEEEEEECCeEEEEEEEeCC
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS--F------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (216)
..+...+|+|+|.+|+|||||+++|+... + .. ......+.......+.+.+ +.++|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence 34567999999999999999999998421 1 00 0011222333344455565 789999999
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|+..|...+..+++.+|++|+|+|+++.........|.. +.. .+.|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999888888889999999999999998776666555543 332 2789999999999864
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=8.1e-18 Score=146.09 Aligned_cols=164 Identities=17% Similarity=0.193 Sum_probs=106.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEE-------EEEEEE--------------------------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFK-------IRTIEL-------------------------- 59 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~-------------------------- 59 (216)
..++|+|+|.+|+|||||+|+|++..+.. ...+++..-.. ..++.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999887542 22232210000 001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccc---cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHH
Q 027949 60 --------------------DGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114 (216)
Q Consensus 60 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 114 (216)
.... ..+.||||||... .......+++.+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 1000 2588999999654 23455677889999999999998877666655544433
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCC--ccChH-------HHHH-----HHHH--------hCCeEEEEecC-----------
Q 027949 115 QHASDNVNKILVGNKADMDESKR--AVPTS-------KGQA-----LADE--------YGIKFFETSAK----------- 161 (216)
Q Consensus 115 ~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~----------- 161 (216)
. .+.|+++|+||+|+.+... ....+ .... +... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 2678999999999854220 11100 1111 1111 12479999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHH
Q 027949 162 ---TNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 162 ---~~~gi~~l~~~l~~~i~~~ 180 (216)
++.|+++++.+|.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999877653
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=2.8e-17 Score=127.74 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=81.7
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------- 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 83 (216)
...++|+|+|.+|+|||||+|+|++..+. ....++.+.......+..++ ..+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34699999999999999999999988753 22223333334444455566 78999999998765533221
Q ss_pred -ccccccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027949 84 -YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKILVGNKADMDE 134 (216)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~ 134 (216)
..+.+|++|||+|++.. ++.. ...|+..+....... .|+++|+||+|+.+
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13468999999998653 2332 235666665554322 69999999999864
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=9.3e-19 Score=141.45 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=104.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE----------------------------------------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK---------------------------------------- 53 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 53 (216)
...+|+|+|.+|||||||+++|++..+........+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3459999999999999999999997763222211110000
Q ss_pred --------------EEEEEECCeEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEeCCCHhHHHHH
Q 027949 54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (216)
Q Consensus 54 --------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 106 (216)
...+... ....+.+|||||...+ ..+...+++++|++|++++..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0011111 1135889999997765 445677889999999999875433221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 107 RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
..|+..+......+.|+++|+||+|+.+. .....+.+..+...++.+|+.++++.+.++++.+.++.....
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence 23334444444457899999999998653 223344444444556789999999999988887766544433
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.74 E-value=3.8e-17 Score=141.33 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=82.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------------------ccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
....+|+|+|..|+|||||+++|++....... ....+.......+.+.+ +.++||||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 34578999999999999999999853221000 11223334444455555 78999999999
Q ss_pred cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (216)
..+...+..+++.+|++++|+|+.+...... ..++..+... +.|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 9988888889999999999999877543322 2344444332 68999999999985
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=2e-17 Score=139.37 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=80.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCC----------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
....+|+|+|.+|+|||||+++|+...-.. ....+.+.......+.+++ +.+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 346899999999999999999998632100 0011111222233455566 7899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|||+..|......+++.+|++|+|+|+.+..... ...++..+. ..+.|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999988888888899999999999998754322 222222222 23789999999999854
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=2e-17 Score=143.65 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcC--CCCC----------------ccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|.+|+|||||+++|+.. .+.. ...+..+.......+.+++ +.++||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 456799999999999999999999852 2110 0011222233344556666 7899999999
Q ss_pred ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
+..+...+..+++.+|++|+|+|+++.........|.. +... +.|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 99888888888999999999999998766655544443 3332 689999999999864
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=9.2e-19 Score=138.02 Aligned_cols=163 Identities=23% Similarity=0.326 Sum_probs=85.1
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcC-CCCCccc--------cceeeeEEEEEEEECCeEEEEEEEeCCCc-------c
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~ 75 (216)
....++|+|+|++|+|||||+++|.+. .++.... ++.........++.++....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999999875 3332221 11111111222333444578999999997 4
Q ss_pred ccccccc-------ccccc-------------ccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 76 RFRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 76 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
.+..+.. .+++. +++++|+.+.+. .+++... .++..+ ....|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l----~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH----TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH----HhcCCEEEEEEeCCCCC
Confidence 4444333 33322 344555555321 1122211 222222 23579999999999854
Q ss_pred CCC-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 135 SKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
... ....+++..++..++++++++||+++ +++++|.++.+.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 211 12345677888889999999999999 9999999999988653
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=5.9e-18 Score=137.96 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEE---------------------ECC-eEEEEEEEeCCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G 73 (216)
++|+|+|.+|+|||||+|+|++........+..+.+....... +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998874333334333333333221 232 247899999999
Q ss_pred ccc----cccccc---cccccccEEEEEEeCCCH
Q 027949 74 QER----FRTITT---AYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 100 (216)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 456899999999999874
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.73 E-value=7.8e-17 Score=140.04 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC--CCCc----------------cccceeeeEEEEEEEECC-----eEEEEEE
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS----------------FITTIGIDFKIRTIELDG-----KRIKLQI 68 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~~~~i 68 (216)
.+...+|+|+|..|+|||||+++|+... +... ...+.+.......+.+++ ..+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3556899999999999999999997531 1100 011222222333344432 3478999
Q ss_pred EeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
|||||+..|...+...++.+|++|+|+|+++.........|. .+.. .+.|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 999999988888888999999999999999875544443343 2222 3689999999999854
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=1.5e-17 Score=131.97 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=68.3
Q ss_pred EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949 64 IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNK 129 (216)
Q Consensus 64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (216)
..+.+|||||... +......+++.+|++|+|+|..+.... .....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999753 344556678899999999997432211 1111222222 2347899999999
Q ss_pred CCCCCCCCccChHHHHHHHHHhCCeEEEEecCC------CCCHHHHHHHHHHHHHH
Q 027949 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~~i~~ 179 (216)
+|+.+... ...+.+.......+..++++|+.. +.|+++++..+.+.+..
T Consensus 208 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99865332 122222211112225666666543 68999999998887754
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=134.17 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc--------ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027949 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---- 78 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---- 78 (216)
-....++|+|+|++|+|||||++.|++..+.... .++.........+...+....+.+||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3455688999999999999999999987653111 1122211111122223434578999999975431
Q ss_pred ---c------------------ccccccccccEEEEEEeCCCH-hHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 79 ---T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 79 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
. +...++.++++.+++|..... .++.... .|+..+. .+.|+++|+||+|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 1 123345555443334333321 2233332 4555553 26899999999998542
Q ss_pred CCccCh--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949 136 KRAVPT--SKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
..... ..+..++..++++++++|+.++.+++++|..|.+.+
T Consensus 183 -~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 -EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp -HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred -HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22222 566777788899999999999999998887776543
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1e-17 Score=132.04 Aligned_cols=134 Identities=22% Similarity=0.210 Sum_probs=106.3
Q ss_pred HHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh-HHHHHH
Q 027949 30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (216)
Q Consensus 30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 107 (216)
+++.++..+.+. ..+.|+.+..+ ...+..++ .+.+||+ ++.++.++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788878887 77888888333 33332233 6899999 8889999999999999999999999997 688888
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Q 027949 108 NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
.|+..+.. .+.|+++|+||+||.+.. . .++...++..++ ++++++||++|.|++++|.++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887755 378999999999986421 1 244667777777 89999999999999999998753
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.68 E-value=5.4e-17 Score=122.25 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=93.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeE--------------EEEEEEE----------------CCeE
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIEL----------------DGKR 63 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 63 (216)
...+|+|+|.+|+|||||+++|+..............+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 347899999999999999999986522111111110000 0011111 0012
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (216)
+.+.+|||+|..... ..+....+.+++|+|+.+... ....+... . +.|+++|+||+|+.+. .....+.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~-~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEA-VGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcc-hhhHHHH
Confidence 567889998851111 111125678999999876532 11111111 1 4788999999998531 1134455
Q ss_pred HHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949 144 GQALADEY--GIKFFETSAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 144 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
....+... +++++++||++|.|+++++++|.+.+....
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 55555554 379999999999999999999998876543
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=2.7e-18 Score=138.35 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=92.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------cccee----------------------e----------------
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG----------------------I---------------- 50 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~----------------------~---------------- 50 (216)
.++|+|+|.+|+|||||+|+|++..+.+.. .|+.. .
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999998763211 12200 0
Q ss_pred -----eEEEEEEEECC-eEEEEEEEeCCCcc-------------cccccccccccccc-EEEEEEeCCCHhHHHHHHHHH
Q 027949 51 -----DFKIRTIELDG-KRIKLQIWDTAGQE-------------RFRTITTAYYRGAM-GILLVYDVTDESSFNNIRNWI 110 (216)
Q Consensus 51 -----~~~~~~~~~~~-~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~ 110 (216)
......+.+.+ ....+.||||||.. .+..+...+++..+ ++++|++++....-.....++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000011100 02578999999963 23345556665554 555567766532212222233
Q ss_pred HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH--HHHHhC-CeEEEEecCCCCCHHHHHHHHHH
Q 027949 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
....+.+.|+++|+||+|+.+.... ..+.... +....+ .+++.+||+++.|++++++++.+
T Consensus 191 ---~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 ---KEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ---HHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ---HHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333457899999999998653221 1111110 011123 36788999999999999999876
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.65 E-value=7.3e-17 Score=130.07 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTS 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~ 142 (216)
+.+.||||||... .....+..+|++++|+|....+....+... + ...|+++|+||+|+.+.... ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 6789999999532 233345789999999998765443222110 1 13588999999998532110 1111
Q ss_pred HHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 143 KGQALADEY-------GIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 143 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
......... +.+++++||++|.|+++++++|.+.+...
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 222222112 46899999999999999999999988663
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=2.8e-15 Score=120.14 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (216)
++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+.+.+.. ..+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 789999999999999999999977544344444444444455555421 478999999986543
Q ss_pred --cccc---cccccccEEEEEEeCCC
Q 027949 79 --TITT---AYYRGAMGILLVYDVTD 99 (216)
Q Consensus 79 --~~~~---~~~~~~d~~i~v~d~~~ 99 (216)
.+.. ..++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2322 34689999999999986
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.63 E-value=3.8e-15 Score=125.99 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCC----------------------CCCccccceeeeEEEEEEEECCeEEEEEEEeC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (216)
..=+|+|+|..++|||||..+|+... ...+...+.++......+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 34579999999999999999996311 0122334444455556777888 78999999
Q ss_pred CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
||+..|.......++-+|++|+|+|+...-.......|.. +..+ ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---CCceEEEEecccchh
Confidence 9999999989999999999999999988655455444533 3333 799999999999754
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=126.06 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=62.5
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (216)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~--~~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVP--ARRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH--HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchh--HHHH
Confidence 57889999996321 2334568999999999987643222211 11 1458899999999843110 0011
Q ss_pred HHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 144 GQALAD----------EYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 144 ~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
...+.. ....+++.+||++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222211 113578999999999999999999987643
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.59 E-value=3.4e-15 Score=112.71 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=90.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE------------EEEEEEC-Ce------------------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GK------------------ 62 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 62 (216)
..++|+|+|.+|||||||+++|+...+...+.++...++. ...+..+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999876554433333332221 1111111 10
Q ss_pred -EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027949 63 -RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT 141 (216)
Q Consensus 63 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (216)
...+.++|++|.-.. ...+-...+..+.++|......... .+...+ ..|.++|+||+|+.+. .....
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~-~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADA-VGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHH-HTCCH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCch-hHHHH
Confidence 013455555552110 0011122345667777532211100 000111 4688999999998541 22345
Q ss_pred HHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 142 SKGQALADEY--GIKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
+....++... +++++++||++|.|++++|++|.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5666666654 4799999999999999999999987754
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.9e-14 Score=114.89 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=103.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYY 85 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~ 85 (216)
+...+|+++|.||||||||+|+|++........++.+.+.....+.+.+ ..+.++|+||.-.-.. .....+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3457999999999999999999999887767778888899999999998 6788999999642211 122345
Q ss_pred ccccEEEEEEeCCCHhHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCccChHHHHHHHHHhCCeEEE
Q 027949 86 RGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKILVGNKADMDE-------SKRAVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
+.+|++++|+|+++|.... .+...+..+.... ...|.++++||.|... .......++.+.+...+.+.--+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 7899999999999885322 2222222222111 2578889999999621 11234456666666666543333
Q ss_pred EecCCCCCHHHHHH
Q 027949 158 TSAKTNLNVEEVFF 171 (216)
Q Consensus 158 ~Sa~~~~gi~~l~~ 171 (216)
+--..+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33344455566543
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=2.8e-15 Score=132.63 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCCC----------------ccccceeeeEEEEEEEE--------------CC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----------------SFITTIGIDFKIRTIEL--------------DG 61 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 61 (216)
.+...+|+|+|..|+|||||+++|+...-.. +...+.+.......+.+ ++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998642100 01111122222222222 33
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
..+.++||||||+..|...+..+++.+|++|+|+|+.+..++.....|..... .+.|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcch
Confidence 46899999999999999999999999999999999999877776655554332 2689999999999853
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=6.5e-15 Score=118.61 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=94.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 76 (216)
++|+++|.+|+|||||+++|++........+..+.+.......+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5789999999999999999998653222222223333333333321 125789999999865
Q ss_pred ccc----cc---ccccccccEEEEEEeCCCH----------hHHHHHHHHHH----------------------------
Q 027949 77 FRT----IT---TAYYRGAMGILLVYDVTDE----------SSFNNIRNWIR---------------------------- 111 (216)
Q Consensus 77 ~~~----~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~---------------------------- 111 (216)
... +. ...++.+|++++|+|+++. +.+.++..+..
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 432 22 2346899999999999851 11111110000
Q ss_pred -----------HHHHh--------------------cCCCCcEEEEEeCCCC--CCCCCccChHHHHHHHHHhCCeEEEE
Q 027949 112 -----------NIEQH--------------------ASDNVNKILVGNKADM--DESKRAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 112 -----------~~~~~--------------------~~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
.+... .-...|+++++||.|. .+.......+.++.++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00000 0113799999999983 22111344567778888889999999
Q ss_pred ecCCCCCHHHHHH
Q 027949 159 SAKTNLNVEEVFF 171 (216)
Q Consensus 159 Sa~~~~gi~~l~~ 171 (216)
||+...++.++..
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9987655554433
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=1.8e-15 Score=128.19 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEE----------------------EE--------
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT----------------------IE-------- 58 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~-------- 58 (216)
....++|+|+|.+|+|||||+|+|++..+. ....++++....... +.
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 445689999999999999999999998763 222232211100000 00
Q ss_pred ------ECCe-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC
Q 027949 59 ------LDGK-RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120 (216)
Q Consensus 59 ------~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (216)
+.+. ...+.||||||... +......++..+|++|+|+|+++.........++..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 0000 02588999999764 334455677889999999999875444444555554433 35
Q ss_pred CcEEEEEeCCCCCC
Q 027949 121 VNKILVGNKADMDE 134 (216)
Q Consensus 121 ~p~ivv~nK~Dl~~ 134 (216)
.|+++|+||+|+.+
T Consensus 219 ~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 219 DKIRVVLNKADMVE 232 (550)
T ss_dssp GGEEEEEECGGGSC
T ss_pred CCEEEEEECCCccC
Confidence 79999999999864
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=6.1e-15 Score=118.16 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=64.9
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTS 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~ 142 (216)
+.+.||||||...... .....+|++++|+|++..+.+..+.. ... +.|.++|+||+|+.+.... ...+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHHHH
Confidence 6789999999654332 24578999999999976543211111 111 3578999999998542110 0001
Q ss_pred HHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 143 KGQALADEY-------GIKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 143 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
......... ..+++++||++|.|+++++++|.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222221 3578999999999999999999997753
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=1.1e-13 Score=106.62 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=67.5
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
+.+.||||||......... ..+.. +++++++|+... ..+.....+....... .+.|+++|+||+|+.+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5789999999865433211 13355 889999987543 2222222111111111 2589999999999854
Q ss_pred CCCccChHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949 135 SKRAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 135 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 179 (216)
... .+.+.. ++...+ ++++++||++++|+++++++|.+.+..
T Consensus 186 ~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEE---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 211 111111 123333 489999999999999999999887643
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.52 E-value=2.4e-15 Score=129.59 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=81.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC--------CC----------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS--------FT----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
-+|+|+|..++|||||..+|+... .. .+...+.++......+.+++ +.++|+||||+..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 368999999999999999986411 10 11112333444444556666 67899999999999
Q ss_pred ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
.......++-+|++|+|+|+...-.......|. .+..+ ++|.++++||+|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc---CCCeEEEEecccccc
Confidence 988888999999999999998764433333343 33333 688999999999754
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=1.9e-14 Score=124.87 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee--------------------------------------------
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-------------------------------------------- 49 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------------------------------------------- 49 (216)
...+|+|+|.+++|||||+|+|++..+.+......+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 347999999999999999999999776211110000
Q ss_pred -------eeEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-ccccEEEEEEeCCCHhHHHHHHH
Q 027949 50 -------IDFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIRN 108 (216)
Q Consensus 50 -------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 108 (216)
.+.....+...+. ..+.|+||||... +..+...++ ..+|++++|+|++.+........
T Consensus 130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0011111111111 3578999999543 112233333 57899999999987533222222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-H-HHHhC-CeEEEEecCCCCCHHHHHHHHHHH
Q 027949 109 WIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA-L-ADEYG-IKFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
++..+. ..+.|+++|+||+|+.+... ........ + ....+ .+++.+||++|.|++++++.|.+.
T Consensus 209 ll~~L~---~~g~pvIlVlNKiDlv~~~~-~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC---TTCSSEEEEEECTTSSCTTC-CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---hcCCCEEEEEeCcccCCcch-hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 333332 34789999999999865322 11111110 0 00123 367889999999999999998863
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=6e-13 Score=116.06 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=81.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CccccceeeeEEEEEEEECC-----eEEEEEEE
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDG-----KRIKLQIW 69 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 69 (216)
+..=+|+|+|..++|||||..+|+.. ... .+...+.++......+.+.+ ..+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 55568999999999999999998631 111 12223333334444555532 24889999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (216)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (216)
||||+-.|.......++-+|++|+|+|+...-.......|.+.... +.|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999988888899999999999999876544444444444333 689999999999743
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=3.1e-13 Score=107.95 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=62.9
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (216)
+.+.|+||+|..... ......+|++++++|....+....+... +. ..+.++++||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence 678999999974321 1234679999999998654322111111 11 2355788899996431 1112222
Q ss_pred HHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949 144 GQALADEY----------GIKFFETSAKTNLNVEEVFFSIARDIK 178 (216)
Q Consensus 144 ~~~~~~~~----------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 178 (216)
...+.... ..+++.+||+++.|+++++++|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23332211 357899999999999999999988764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.42 E-value=5.5e-13 Score=105.02 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred ccccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHHHHHHHHHh
Q 027949 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP-TSKGQALADEY 151 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~ 151 (216)
++.+..+.+.+++++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+.. ... .+....++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE-EKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc-ccHHHHHHHHHHHHC
Confidence 5667778888999999999999999986 88888888886654 378999999999986421 112 34455666777
Q ss_pred CCeEEEEecCCCCCHHHHHHHHH
Q 027949 152 GIKFFETSAKTNLNVEEVFFSIA 174 (216)
Q Consensus 152 ~~~~~~~Sa~~~~gi~~l~~~l~ 174 (216)
+.+++++||++|.|+++++..+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 89999999999999999998863
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=6.1e-14 Score=102.99 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=70.1
Q ss_pred CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHH----HHhc-CCCCcEEEEEeCC-CCCCCCCccChHHHH
Q 027949 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI----EQHA-SDNVNKILVGNKA-DMDESKRAVPTSKGQ 145 (216)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 145 (216)
+|+...+.+|..|+.++|++|||+|.+|.+.+. .+..+..+ .+.. ..+.|++|++||. |+++ ..+..++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence 378889999999999999999999999875443 33333222 2221 2478999999995 7744 33444433
Q ss_pred HHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 146 ALAD----EYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
+... ...|.+..|||.+|+|+.+.++||.+.+..+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 3322 2358899999999999999999998776543
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.6e-11 Score=99.54 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=64.5
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~ 76 (216)
....+|+|+|.+|||||||+|+|++... .....|+.+.+.....+.+.+.. ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999999776 55566666667777777776521 3678999999543
Q ss_pred c-------ccccccccccccEEEEEEeCCC
Q 027949 77 F-------RTITTAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 77 ~-------~~~~~~~~~~~d~~i~v~d~~~ 99 (216)
. .......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1123344578999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=105.97 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 77 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 77 (216)
...++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 44589999999999999999999998765555566666666666666542 135899999997654
Q ss_pred cc-------ccccccccccEEEEEEeCCCHh
Q 027949 78 RT-------ITTAYYRGAMGILLVYDVTDES 101 (216)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 101 (216)
.. .+...++.+|++++|+|+++.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 3455678999999999997643
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=99.62 Aligned_cols=106 Identities=8% Similarity=-0.029 Sum_probs=74.1
Q ss_pred CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHH----HHHHHh-cCCCCcEEEEEeC-CCCCCCCCccChHHH
Q 027949 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI----RNIEQH-ASDNVNKILVGNK-ADMDESKRAVPTSKG 144 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 144 (216)
.+|+...+..|..|+.++|++|||+|.+|.+.+. ....+ ..+.+. ...+.|++|++|| .|++++ .+..++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHH
Confidence 3577888999999999999999999999986543 22222 223222 1247999999996 687543 344443
Q ss_pred HHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949 145 QALAD----EYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180 (216)
Q Consensus 145 ~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 180 (216)
.+... ...+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 33321 2347899999999999999999999887543
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=2.3e-10 Score=93.45 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=37.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc----ccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...++++|+|++|+|||||++.|++..+.... .+..........++..+....++++|++|.
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 34577999999999999999999987543211 122222211222222333347889999874
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.01 E-value=4.1e-10 Score=87.15 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=69.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc--------cc-ceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------IT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ 79 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------ 79 (216)
.++++|+|++|+|||||++.|++...+... .+ +.........++..+....++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999885432110 00 000011111111122223678999987321000
Q ss_pred ----------------------ccccccccccEEEEEEeCC-CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949 80 ----------------------ITTAYYRGAMGILLVYDVT-DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (216)
Q Consensus 80 ----------------------~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (216)
...-.+..+++.++++|.. .+-...+ ...+..+.. . .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 0011123468888888854 2211111 223333332 2 7999999999964311
Q ss_pred -CccChHHHHHHHHHhCCeEEE
Q 027949 137 -RAVPTSKGQALADEYGIKFFE 157 (216)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~ 157 (216)
.......+......+++.+|.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 111223344445566776664
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=9e-10 Score=88.94 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=71.4
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH----HHHHH
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK----GQALA 148 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~ 148 (216)
..+.|......+++.++++++|+|+.++. ..|...+.+... +.|+++|+||+|+.+.. ...+. ...++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS--VKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT--SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc--cCHHHHHHHHHHHH
Confidence 35678888888888999999999999864 345455555443 68999999999986422 22223 33345
Q ss_pred HHhCC---eEEEEecCCCCCHHHHHHHHHHH
Q 027949 149 DEYGI---KFFETSAKTNLNVEEVFFSIARD 176 (216)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~ 176 (216)
...+. .++.+||++|.|+++++++|.+.
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 66676 89999999999999999998654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=5.3e-11 Score=96.21 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=80.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----c----
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----T---- 81 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~---- 81 (216)
.+|+++|.+|+|||||+|+|++. .......++.+.+ ...+..+. .+.++||||....... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 2323334444433 33344443 2688999996432211 1
Q ss_pred cccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 82 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..++ ...+.++|+++....-.+..+.. +......+.|+++++||.|..+ ..........+.+..+..+.+.+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence 1111 56788999998743211011100 1112234689999999999743 22233444455566676666656
Q ss_pred cCCCCC
Q 027949 160 AKTNLN 165 (216)
Q Consensus 160 a~~~~g 165 (216)
+.+..+
T Consensus 312 ~~~~~~ 317 (369)
T 3ec1_A 312 KRYAAE 317 (369)
T ss_dssp GGGTTT
T ss_pred chhhhh
Confidence 554444
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=3.1e-10 Score=94.80 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=84.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHH------cCCCCCc----cccce-----------eeeEEEEE---------------E
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFS------DGSFTTS----FITTI-----------GIDFKIRT---------------I 57 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~------~~~~~~~----~~~~~-----------~~~~~~~~---------------~ 57 (216)
....|+|+|.+||||||+++.|. +..+... +.+.. +....... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998 4332100 00000 01111100 0
Q ss_pred EECCeEEEEEEEeCCCcccccc-cccc---c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCC
Q 027949 58 ELDGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKA 130 (216)
Q Consensus 58 ~~~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~ 130 (216)
...+ +.+.|+||||...... +... . +..+|.+++|+|+....... .....+... .|+ .+|+||.
T Consensus 180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~ 250 (504)
T 2j37_W 180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKL 250 (504)
T ss_dssp HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECT
T ss_pred HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCC
Confidence 0133 6789999999753221 1111 1 12689999999998754311 222223221 464 8889999
Q ss_pred CCCCCCCccChHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027949 131 DMDESKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEEVFFSIARD 176 (216)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~l~~~ 176 (216)
|.... . ..+.......+.++ +.+|+..|.| ++++++++.+.
T Consensus 251 D~~~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 97421 1 11222334444443 3468888999 99999988766
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=3.5e-11 Score=97.21 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=73.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----c--
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----T-- 82 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~-- 82 (216)
.+|+++|.+|+|||||+|+|++.... ....++.+ .....+.+.. .+.++||||......+. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999885311 12223333 3333344443 26889999964322111 1
Q ss_pred --cc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949 83 --AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 83 --~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
.+ ....+.++|+++......+..+. .+......+.|+++++||.|..+ ..........+.+..+..+++.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence 11 24567888888863221101110 01112234689999999999743 2222333444455556554444
Q ss_pred ec
Q 027949 159 SA 160 (216)
Q Consensus 159 Sa 160 (216)
++
T Consensus 310 ~~ 311 (368)
T 3h2y_A 310 TP 311 (368)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.85 E-value=6.2e-08 Score=79.06 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=83.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeE--EEEEEEECCeEEEEEEEeCCCcccccccccc-----cccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~ 87 (216)
..++|+|++|||||||+|.|.+...+..- ....+.+. ....++... ...+.+||++|.......... -+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 57899999999999999999984322111 00001000 011112111 125788999985421111111 1233
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCccChHH----HHHHH----HHhC-
Q 027949 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD--E----SKRAVPTSK----GQALA----DEYG- 152 (216)
Q Consensus 88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~~- 152 (216)
.+..++ ++..... ..-..+...+... +.|+++|.||.|+. + .-....... ++.+. ...+
T Consensus 149 ~~~~~~-lS~G~~~--kqrv~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFK--KNDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCC--HHHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCcc--HHHHHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355554 7765321 1111222233332 68999999999962 1 111222222 33332 1222
Q ss_pred --CeEEEEec--CCCCCHHHHHHHHHHHHHH
Q 027949 153 --IKFFETSA--KTNLNVEEVFFSIARDIKQ 179 (216)
Q Consensus 153 --~~~~~~Sa--~~~~gi~~l~~~l~~~i~~ 179 (216)
..++.+|+ .++.|++++.+.|.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 36788999 5667899999998877644
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.81 E-value=3e-09 Score=85.90 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=70.0
Q ss_pred CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH----HHHHH
Q 027949 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK----GQALA 148 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~ 148 (216)
.++.|......+++.++++++|+|+.++.+ .|...+..... +.|+++|+||+|+.+.. ...+. ...++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS--VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc--cCHHHHHHHHHHHH
Confidence 467788888888889999999999999873 33333444333 68999999999986522 22223 33345
Q ss_pred HHhCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 027949 149 DEYGI---KFFETSAKTNLNVEEVFFSIARDI 177 (216)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 177 (216)
...+. .++.+||++|.|++++++.|.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 56665 789999999999999999886543
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=1.2e-08 Score=79.48 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=70.1
Q ss_pred EeCCCcc-ccccccccccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027949 69 WDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ 145 (216)
Q Consensus 69 ~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 145 (216)
-..||+. .........+.++|++++|+|+.+|.+.. .+..++ .+.|.++|+||+|+.+. ...+...
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~~ 72 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQWK 72 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHHH
Confidence 3568875 23334556678999999999999987654 333332 37899999999998641 1122334
Q ss_pred HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949 146 ALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181 (216)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 181 (216)
++....+.+++.+||.++.|+++++..+.+.+....
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~ 108 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF 108 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence 444456789999999999999999999888776543
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.52 E-value=3.7e-08 Score=80.82 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|......... ......|.+++|+|+....... .....+.+. ..+..||+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCcc---
Confidence 6788999999543221110 1122468899999987654322 222333332 235578899999642
Q ss_pred ccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949 138 AVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 167 (216)
....+..+....+.|+.+++. |++++
T Consensus 254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 --KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 223455566677888887775 55443
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.52 E-value=9.3e-08 Score=74.35 Aligned_cols=57 Identities=28% Similarity=0.364 Sum_probs=35.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
..++|+|+|.+|+|||||+|+|.+.... ....++.+.+.. .+..+. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 4589999999999999999999987632 333333332222 333333 57899999964
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=6.9e-08 Score=74.29 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
++++|+|.+|+|||||+|+|.+.... ....++.+.. ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG--IQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CC--SCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc--eEEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987653 2222222222 22233332 578999999753
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=7.9e-07 Score=73.09 Aligned_cols=83 Identities=17% Similarity=0.058 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccccccc-c-----ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI-T-----TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KILVGNKADMDES 135 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~-----~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~~ 135 (216)
+.+.|+||||....... . ...+...|.+++|+|+..... .......+.. .. | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc-
Confidence 67899999996532110 0 111235899999999865532 2222222221 34 5 788999999632
Q ss_pred CCccChHHHHHHHHHhCCeEEEE
Q 027949 136 KRAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
....+..+....+.++..+
T Consensus 253 ----~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 ----KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----TTHHHHHHHHHSSCCEEEE
T ss_pred ----chHHHHHHHHHHCCCEEEe
Confidence 1123344566667666655
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.31 E-value=1.3e-07 Score=77.45 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccc--cccc----cccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949 64 IKLQIWDTAGQER--FRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (216)
Q Consensus 64 ~~~~i~D~~G~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (216)
+.+.|+||+|... .... .... ....+.+++|+|+....... .....+.+. -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc-
Confidence 5788999999643 1111 1111 11358899999997654322 222333333 245688999999632
Q ss_pred CCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 166 (216)
....+..+....+.|+.+++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233456666678899888875 6554
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.29 E-value=4.2e-07 Score=77.25 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=39.0
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccc---eeeeEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT---IGIDFKIRTIEL-DGKRIKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~ 76 (216)
...++|+|+|.+|+|||||+|+|++.........+ .+.....+.... ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45689999999999999999999987642211111 111111111111 11124688999999653
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=4.7e-07 Score=69.63 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=60.3
Q ss_pred CCCcccc-ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027949 71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD 149 (216)
Q Consensus 71 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (216)
.||+... .......+.++|++++|+|+.+|.+..... +. .. +.|.++|+||+|+.+. ...+....+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~---~~~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADE---KTTKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCH---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCH---HHHHHHHHHHH
Confidence 3665422 123455678899999999999886543210 11 11 6899999999998642 11223344455
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949 150 EYGIKFFETSAKTNLNVEEVFFSIAR 175 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~gi~~l~~~l~~ 175 (216)
..+.++ .+||.++.|+++++.+|..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 567888 9999999999999887644
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=2.7e-06 Score=66.57 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027949 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (216)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (216)
+.+.|+||||... ... +.. .....+|.+++|+|+.... ........+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 6789999999765 211 111 1234689999999986432 22222233332 245 678899999532
Q ss_pred CCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
....+..+....+.++..++ .|++++++
T Consensus 254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 22345566777888888776 56666554
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=6.6e-07 Score=70.22 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=59.4
Q ss_pred cccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhCCeEE
Q 027949 79 TITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEYGIKFF 156 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 156 (216)
.+.+..+.++|.+++|+|+.+|..- ..+..++..... .++|.+||+||+||.+.... ...+....+....|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 3445567899999999999877543 334444433322 37899999999998652110 012334445556688999
Q ss_pred EEecCCCCCHHHHHH
Q 027949 157 ETSAKTNLNVEEVFF 171 (216)
Q Consensus 157 ~~Sa~~~~gi~~l~~ 171 (216)
.+||.++.|+++|+.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776544
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.11 E-value=8.7e-06 Score=65.12 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=55.4
Q ss_pred ccccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949 84 YYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
...++|.+++|.+. +|.. ...+..++...... +.|++||+||+||.+.......+.........|.+++.+||.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45789999988665 4543 33444454433333 6788999999998652110001222333445678999999999
Q ss_pred CCCHHHHHHHH
Q 027949 163 NLNVEEVFFSI 173 (216)
Q Consensus 163 ~~gi~~l~~~l 173 (216)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999986643
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.02 E-value=9.2e-06 Score=69.70 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.|+|+|++|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.96 E-value=1.2e-05 Score=63.66 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=53.6
Q ss_pred EEEEEeCCCccccccccccc------cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949 65 KLQIWDTAGQERFRTITTAY------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (216)
.+.++|++|........... .-..|-.+++.|..... .+......+.... ...++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 45678999964332211111 11357788999975543 3333334444332 23377889999421
Q ss_pred cChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 139 VPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
..-.+.......+.++..++ +|++++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 22345567778888888886 77776654
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.71 E-value=1.4e-06 Score=72.50 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=59.8
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------T 82 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 82 (216)
...+.|+++|.+||||||+.++|...... ...++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999754211 0111111000000000011112345788888632 22222 4
Q ss_pred cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 027949 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG 127 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (216)
.++...++.++|+|.++. .......|+..+... +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 455557788999999987 445555666655544 33444443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.67 E-value=5.7e-05 Score=62.17 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.9
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
....-|.|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45678999999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.52 E-value=5e-05 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.+++++|++|+|||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=9.1e-05 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999874
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.37 E-value=0.0002 Score=52.36 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=53.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccCh
Q 027949 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKRAVPT 141 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (216)
+.+.|+|+|+.. .......+..+|.+|+++..+... ..+...+..+.... ..+.++.+|+|+.|-.. ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~----~~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA----TML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE----EEE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc----hHH
Confidence 678899999864 333455566799999999876543 55555555555432 23567789999998421 123
Q ss_pred HHHHHHHHHhCCeEE
Q 027949 142 SKGQALADEYGIKFF 156 (216)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (216)
.+..++...++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 445555555665544
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.35 E-value=0.0001 Score=54.05 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999863
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=0.00013 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~ 39 (216)
++|+|++||||||+++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.27 E-value=0.0027 Score=52.12 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 136 (216)
+.+.|+||||......... ..+...+.+++|+|+...... ......+... .+ .-+|+||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~-- 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDA-- 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSS--
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCc--
Confidence 6789999999654321111 113357889999998754322 2222333322 33 356899999632
Q ss_pred CccChHHHHHHHHHhCCeEEEE
Q 027949 137 RAVPTSKGQALADEYGIKFFET 158 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
.. ..+..+....+.++..+
T Consensus 255 -~~--g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 255 -RG--GAALSIRHITGKPIKFL 273 (433)
T ss_dssp -CC--THHHHHHHHHCCCEEEE
T ss_pred -cH--HHHHHHHHHHCCCeEEE
Confidence 11 23445555666654444
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.26 E-value=0.00015 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4799999999999999999875
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=0.00016 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998754
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00017 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|+|+|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.22 E-value=0.00017 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.19 E-value=0.00019 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998744
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=4.1e-05 Score=55.63 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~ 39 (216)
|+|+|++|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998643
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.19 E-value=0.00024 Score=58.18 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||||...... ... ...-..|.+++|+|+... ..+......+.... ...-+|+||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~--- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDA--- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence 5788999999654321 111 111247888999998643 22222333333321 13467899999532
Q ss_pred ccChHHHHHHHHHhCCeEEEEe
Q 027949 138 AVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
....+.......+.++.++.
T Consensus 252 --~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 --RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --SCHHHHHHHHHHCCCEEEEE
T ss_pred --cHHHHHHHHHHHCCCEEEEe
Confidence 12245556677788877765
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.17 E-value=0.00022 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999999999998754
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.15 E-value=0.00027 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.15 E-value=0.00021 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027949 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~ 36 (216)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.14 E-value=0.00023 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
...|+|+|++|||||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998764
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.13 E-value=0.00022 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998754
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.09 E-value=0.00028 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-|+|+|++||||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998764
No 255
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.08 E-value=0.0041 Score=45.76 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=53.3
Q ss_pred EEEEEEeCCCc-cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949 64 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS 142 (216)
Q Consensus 64 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (216)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...+..+.... +.++.+|+|+.|-... ....
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~---~~~~ 139 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS---KDGD 139 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS---CHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc---hHHH
Confidence 67889999876 32 22344566799988888765 456666666666665533 4668899999984220 1234
Q ss_pred HHHHHHHHhCCeEE
Q 027949 143 KGQALADEYGIKFF 156 (216)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (216)
+..+....++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44455555665544
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00046 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.07 E-value=0.00026 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00032 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 259
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.02 E-value=0.00034 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00036 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.02 E-value=0.00036 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-++|+|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999985
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.01 E-value=0.00034 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.01 E-value=0.00034 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999999754
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.00 E-value=0.00038 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45799999999999999999764
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.00 E-value=0.00037 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
..|+|+|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998754
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.98 E-value=0.0004 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.98 E-value=0.00037 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.98 E-value=0.00037 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999999854
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.97 E-value=0.00043 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
-.|+|+|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.96 E-value=0.00046 Score=55.20 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999998654
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.96 E-value=0.00044 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.96 E-value=0.00039 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998764
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.95 E-value=0.00044 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.95 E-value=0.00041 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46899999999999999998754
No 275
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.95 E-value=0.00049 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998764
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.95 E-value=0.00047 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.95 E-value=0.00041 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.94 E-value=0.00043 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.93 E-value=0.00047 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.93 E-value=0.00041 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 281
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.92 E-value=0.00046 Score=52.47 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 282
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00055 Score=51.75 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 027949 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~ 36 (216)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.92 E-value=0.0005 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.92 E-value=0.00048 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999863
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.00062 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.0005 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.91 E-value=0.00053 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 027949 16 IKLLLIGDSGVGKSCLLLRF 35 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l 35 (216)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 288
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.89 E-value=0.00054 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 289
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.89 E-value=0.00054 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.89 E-value=0.00054 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999975
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.87 E-value=0.00057 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6799999999999999999864
No 292
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.87 E-value=0.00057 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.86 E-value=0.00061 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 294
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.86 E-value=0.00053 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 295
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.85 E-value=0.00055 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.00052 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998764
No 297
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.82 E-value=0.00079 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..-.-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 33467899999999999999999875
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.81 E-value=0.00067 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.0007 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999764
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.80 E-value=0.00072 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00066 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999986
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.00068 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
--|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998754
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.80 E-value=0.00042 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cC
Q 027949 17 KLLLIGDSGVGKSCLLLRFS-DG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~-~~ 38 (216)
-++|+|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57999999999999999999 64
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.80 E-value=0.00072 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999764
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.00071 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027949 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~ 36 (216)
-++|+|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999987
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.79 E-value=0.00067 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
...-|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3467899999999999999998864
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00089 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 308
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.79 E-value=0.00078 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00082 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00077 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.77 E-value=0.00094 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 312
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00024 Score=55.63 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.77 E-value=0.00079 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00081 Score=52.55 Aligned_cols=24 Identities=42% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++++|++|+|||||++.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987653
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.75 E-value=0.00069 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999874
No 316
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.75 E-value=0.00082 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.0014 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999874
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.74 E-value=0.00076 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999875
No 319
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.72 E-value=0.00083 Score=52.52 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999999 54
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00077 Score=53.92 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999999864
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.71 E-value=0.00099 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 322
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.71 E-value=0.00061 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5799999999999999999874
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00046 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.69 E-value=0.0012 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 325
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.69 E-value=0.00088 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 326
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.68 E-value=0.00094 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999999754
No 327
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.67 E-value=0.00094 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999764
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.66 E-value=0.0013 Score=47.33 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999865
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.66 E-value=0.00091 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.65 E-value=0.00099 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999876
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.0012 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999875
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.65 E-value=0.001 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999999864
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.64 E-value=0.0011 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 334
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.001 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999999854
No 335
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.001 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999999864
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.001 Score=53.21 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999763
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.61 E-value=0.00082 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+.-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998743
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998764
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.0013 Score=46.40 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.61 E-value=0.0016 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++||||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999874
No 341
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.60 E-value=0.0011 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999999864
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.59 E-value=0.0012 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999999854
No 343
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.58 E-value=0.0014 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.58 E-value=0.0016 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
..+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
No 346
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.57 E-value=0.0012 Score=51.71 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=48.3
Q ss_pred EEEEEeCCCcccccc------------ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949 65 KLQIWDTAGQERFRT------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (216)
.+.++|++|...... +.+......+.++++.|....... ...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence 456789998543211 111223345677889997655432 22233333322 2 24778899884
Q ss_pred CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168 (216)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 168 (216)
.. ..-.+.......+.++.++. .|+++++
T Consensus 260 ~a-----~gg~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 260 TA-----KGGVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp SC-----CCTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred cc-----cccHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 21 12234456667787777764 4444443
No 347
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.57 E-value=0.0017 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
.+.|+|+|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999964
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.0016 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 349
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0013 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
--++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.54 E-value=0.0019 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 351
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.53 E-value=0.00095 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999999764
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.53 E-value=0.0015 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999865
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.52 E-value=0.0015 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.52 E-value=0.0019 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3447799999999999999999865
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.50 E-value=0.0013 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 356
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0018 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.50 E-value=0.0014 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.49 E-value=0.0013 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++|||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0016 Score=48.37 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.48 E-value=0.0013 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0017 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..++|+|.+|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.48 E-value=0.0013 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999753
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.47 E-value=0.0023 Score=46.53 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999865
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.46 E-value=0.0024 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
.....|+|+|++|||||||.+.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999988754
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.45 E-value=0.0016 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
=.|+|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999863
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.45 E-value=0.0022 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
...|+|+|++||||||+++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.45 E-value=0.002 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
..-|+|.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999975
No 368
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0015 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999999874
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.41 E-value=0.0018 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.41 E-value=0.0019 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.0018 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
No 372
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.40 E-value=0.00093 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999999864
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.39 E-value=0.0017 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.002 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999998754
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.003 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 67899999999999999998653
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.36 E-value=0.00077 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999875
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.35 E-value=0.0023 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 027949 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~ 36 (216)
..|+|+|++||||||+.+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.34 E-value=0.002 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-.+|+|+.|+|||||++.|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999865
No 379
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.34 E-value=0.0022 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.33 E-value=0.002 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 381
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.32 E-value=0.002 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
--|+|+|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999876
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.32 E-value=0.0021 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.32 E-value=0.0021 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999853
No 384
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.31 E-value=0.0021 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.30 E-value=0.0021 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3799999999999999999874
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.30 E-value=0.0024 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.29 E-value=0.0024 Score=45.08 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.29 E-value=0.002 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
...|+++|++||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998753
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.0021 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 390
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.28 E-value=0.002 Score=54.07 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++||||||+++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0016 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
--++|+|..|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999753
No 392
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.25 E-value=0.0023 Score=53.25 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=50.5
Q ss_pred EEEEEEeCCCcccccccc-----------cccc-ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 64 IKLQIWDTAGQERFRTIT-----------TAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~-----------~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||+|........ ..+. ..-+-+++++|...... .......+.... + ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--C-CCEEEEEcCC
Confidence 457789999964322111 0011 12356788999765432 222233343332 2 2357899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
-. ...-.+..++...+.++.++ -+|++++++
T Consensus 450 ~t-----akgG~~lsi~~~~~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 450 GT-----AKGGVIFSVADQFGIPIRYI--GVGERIEDL 480 (503)
T ss_dssp GC-----SCCTHHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred Cc-----ccccHHHHHHHHHCCCEEEE--ecCCChhhc
Confidence 42 12334666777788887775 455555554
No 393
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.23 E-value=0.0033 Score=46.35 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999975
No 395
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0021 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|||||||++.|++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57999999999999999998754
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.22 E-value=0.0032 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.22 E-value=0.0027 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.19 E-value=0.0044 Score=45.96 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 027949 18 LLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~ 37 (216)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998875
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.19 E-value=0.002 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0027 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.19 E-value=0.0033 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998865
No 402
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.17 E-value=0.0028 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.16 E-value=0.0025 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999998764
No 404
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.003 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|++|+|||++++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.13 E-value=0.0037 Score=44.06 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 406
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.12 E-value=0.0054 Score=42.15 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999988754
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.12 E-value=0.0057 Score=47.20 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999873
No 408
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0035 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|||||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.08 E-value=0.0034 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
.-|+|+|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 410
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.06 E-value=0.0035 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.05 E-value=0.0036 Score=45.52 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.05 E-value=0.004 Score=43.25 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027949 18 LLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~ 36 (216)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999974
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.05 E-value=0.0036 Score=46.77 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999874
No 414
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.04 E-value=0.0028 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999988754
No 415
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.04 E-value=0.0035 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||++++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0036 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 417
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.0032 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-++++|++|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999999854
No 418
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.00 E-value=0.0036 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999976
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.98 E-value=0.0059 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-|+|.|++||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67899999999999999998754
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0045 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHc
Q 027949 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~~GKStli~~l~~ 37 (216)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999864
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.004 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47999999999999999999854
No 422
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.92 E-value=0.0055 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..+.|+|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998753
No 423
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.91 E-value=0.016 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.6
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHH
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~ 36 (216)
....-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 466778899999999999999664
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0054 Score=47.53 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.90 E-value=0.0043 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
-.++|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3679999999999999999986
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.88 E-value=0.0044 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67999999999999999998864
No 427
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.82 E-value=0.0044 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998753
No 428
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.81 E-value=0.005 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998753
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.81 E-value=0.0057 Score=42.14 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998654
No 430
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.80 E-value=0.0042 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.+++.|+||+|||+++.++.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988875
No 431
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.77 E-value=0.0052 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998854
No 432
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.77 E-value=0.0052 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.+++.|++|+|||++++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.75 E-value=0.0056 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999865
No 434
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.74 E-value=0.0058 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|++|+|||++++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999763
No 435
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.011 Score=44.08 Aligned_cols=28 Identities=18% Similarity=-0.044 Sum_probs=21.5
Q ss_pred CCceEEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 12 ~~~~~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
+.+.+=|++.|+++.|||+|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 3444555555999999999999999874
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.0056 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999764
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.71 E-value=0.0062 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|+.|+|||||++.|.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998643
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.0053 Score=51.85 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|++|+|||||++.|.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999998543
No 439
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.70 E-value=0.0067 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
..+++.|+|++||||||+.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 348899999999999999998865
No 440
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.0061 Score=44.43 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++|.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.68 E-value=0.0061 Score=48.88 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027949 18 LLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~ 36 (216)
.+|+|+.||||||+++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999999986
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.68 E-value=0.0056 Score=47.06 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 443
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.66 E-value=0.0045 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57999999999999999998753
No 444
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.66 E-value=0.0066 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|+.|+|||||++.|.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.65 E-value=0.0061 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|++|+|||++++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999864
No 446
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.62 E-value=0.005 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 67999999999999999998743
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.58 E-value=0.0063 Score=47.36 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=46.3
Q ss_pred EEEEEEeCCCccccccc--c--ccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949 64 IKLQIWDTAGQERFRTI--T--TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~--~--~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (216)
+.+.|+||+|....... . ...+. ..+.+++|+|++.. ...+..+...+.. -...-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VPVNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SCCCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CCCCEEEEeCCCccc---
Confidence 57889999997543221 1 11222 35678888987643 2233333222221 112356679999632
Q ss_pred ccChHHHHHHHHHhCCeEEEEe
Q 027949 138 AVPTSKGQALADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
....+...+...+.++..++
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 --SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CCHHHHHHHHTCSCCCSEEC
T ss_pred --chhHHHHHHHHHCcCEEEEE
Confidence 12355666777787766554
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0079 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
.....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999875
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.57 E-value=0.0067 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-|+|+|++||||||+.+.|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999753
No 450
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.57 E-value=0.0066 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-+++.|+||+|||+|.+.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56788899999999999999764
No 451
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.55 E-value=0.0053 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
....|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999988754
No 452
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.55 E-value=0.0069 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999999998763
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0071 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~~ 40 (216)
++|+|++|+|||||++.|.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 69999999999999999998653
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.54 E-value=0.0075 Score=47.16 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=51.5
Q ss_pred EEEEEEeCCCcccccccc-------cc-----ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949 64 IKLQIWDTAGQERFRTIT-------TA-----YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+|+||........ .. .....+.+++|+|+.... ..+. ....+.... ...-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~-~a~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLV-QAKIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHH-HHHHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHH-HHHHHHhcC---CCCEEEEeCCC
Confidence 467899999963221110 00 112467889999986432 1222 122333321 23356789999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169 (216)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 169 (216)
... ..-.+..+....+.|+.++.. |+.++++
T Consensus 261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 261 GTA-----KGGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp GCS-----CTTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred Ccc-----chHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 532 223467778888888887753 4444443
No 455
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.52 E-value=0.0043 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999988864
No 456
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.51 E-value=0.0089 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
.|.|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.50 E-value=0.011 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=20.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~ 37 (216)
....|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999987755
No 458
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.42 E-value=0.0058 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.0068 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 027949 18 LLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~ 37 (216)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.36 E-value=0.01 Score=43.41 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027949 18 LLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~ 36 (216)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999873
No 461
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.35 E-value=0.0094 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.0092 Score=44.55 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999877754
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.34 E-value=0.0095 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
..++|.|++|+|||++++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999987654
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.32 E-value=0.0086 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999998763
No 465
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.31 E-value=0.014 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 14 ~~~~i~v~G~~~~GKStli~~l~~~ 38 (216)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999999864
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.30 E-value=0.011 Score=43.17 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
..|+|+|++|+|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0094 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998765
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.29 E-value=0.0098 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|+|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999998764
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.27 E-value=0.0091 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
-+.|+|++|+|||||+..++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.26 E-value=0.01 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.22 E-value=0.01 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999864
No 472
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.011 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 473
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.18 E-value=0.069 Score=42.67 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027949 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~ 37 (216)
-.+|+|+.|+||||+++.+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 468999999999999999864
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.18 E-value=0.012 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.15 E-value=0.013 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~~ 40 (216)
.++|+|++|+|||||++.|.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999997554
No 476
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.012 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|+||+|||+|++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.10 E-value=0.0073 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~~ 39 (216)
.++|+|++|+|||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 478
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.08 E-value=0.013 Score=42.00 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999855
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.08 E-value=0.013 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHc
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~ 37 (216)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999875
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.07 E-value=0.013 Score=45.93 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|++|+|||++++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999764
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.013 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999864
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.04 E-value=0.0057 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
+++.|++|+|||++++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999763
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.04 E-value=0.0087 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|+|++|||||||.+.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 56899999999999999999764
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.03 E-value=0.013 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~ 38 (216)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.95 E-value=0.016 Score=45.34 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.+++.|++|+|||+|+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998753
No 486
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.94 E-value=0.0041 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027949 18 LLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 18 i~v~G~~~~GKStli~~l~~~~ 39 (216)
++|+|++|+|||||++.+.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3689999999999999997743
No 487
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.94 E-value=0.012 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 488
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.91 E-value=0.016 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+|+|++|||||||...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.89 E-value=0.017 Score=45.71 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+|+|++|||||||...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.88 E-value=0.014 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998764
No 491
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.88 E-value=0.014 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+|+|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.018 Score=43.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
.-|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.86 E-value=0.014 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
.++|.|++|+|||++++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 494
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.015 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|++.|+||+|||.|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.84 E-value=0.015 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.80 E-value=0.017 Score=43.83 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~~ 39 (216)
..|+|.|++|+|||++.+.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999998654
No 497
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.80 E-value=0.016 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027949 17 KLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 17 ~i~v~G~~~~GKStli~~l~~~ 38 (216)
-|+++|++|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 498
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.79 E-value=0.016 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
..|+|.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999654
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.79 E-value=0.015 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
--++|.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999998763
No 500
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.013 Score=46.03 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 027949 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (216)
Q Consensus 16 ~~i~v~G~~~~GKStli~~l~~~ 38 (216)
-.++|.|+||+|||++++.++..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998754
Done!