BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027953
MKTILLNLTVIALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTY
NLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTT
TGTNYFFSDAEDGLQCQRGVAFEISVNRGLGLPPSLNQPPPPPYIEPPGPETSQMTPVNI
NGGSPEIDNSALRSVANMRFLLSPLLIGVTSLLLAF

High Scoring Gene Products

Symbol, full name Information P value
ENODL18
AT1G08500
protein from Arabidopsis thaliana 2.8e-18
UCC1
AT2G32300
protein from Arabidopsis thaliana 1.5e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027953
        (216 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2201801 - symbol:ENODL18 "early nodulin-like p...   221  2.8e-18   1
TAIR|locus:2062525 - symbol:UCC1 "uclacyanin 1" species:3...   106  1.5e-06   2


>TAIR|locus:2201801 [details] [associations]
            symbol:ENODL18 "early nodulin-like protein 18"
            species:3702 "Arabidopsis thaliana" [GO:0005507 "copper ion
            binding" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0009055 "electron carrier activity" evidence=IEA]
            [GO:0031225 "anchored to membrane" evidence=TAS] InterPro:IPR003245
            Pfam:PF02298 PROSITE:PS51485 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009055 GO:GO:0031225 GO:GO:0005507
            EMBL:AC006932 Gene3D:2.60.40.420 InterPro:IPR008972 SUPFAM:SSF49503
            HSSP:P29602 EMBL:U76300 EMBL:AF370470 EMBL:AY064634 IPI:IPI00521847
            PIR:A86218 RefSeq:NP_563820.1 UniGene:At.10756
            ProteinModelPortal:O82083 SMR:O82083 STRING:O82083 PRIDE:O82083
            EnsemblPlants:AT1G08500.1 GeneID:837371 KEGG:ath:AT1G08500
            TAIR:At1g08500 eggNOG:NOG250246 HOGENOM:HOG000237775
            InParanoid:O82083 OMA:NYDGEQC PhylomeDB:O82083
            ProtClustDB:CLSN2916985 Genevestigator:O82083 Uniprot:O82083
        Length = 228

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 51/141 (36%), Positives = 75/141 (53%)

Query:    11 IALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNT 70
             + L++ ++     A AY N+TVG   GW FD     SA NY  WA +++++LGD+LIFNT
Sbjct:    11 VLLIMCLMLLSLSADAYKNYTVGESTGW-FDIQERPSA-NYQKWADSKSFSLGDFLIFNT 68

Query:    71 NTNQTVIQTYNEXXXXXXXXXXXXXXXXFHYNGGGNEFGQNV--TIAVPLTTTGTNYFFS 128
             ++N +V+QTY+                   ++         V  +I+VPL   G+NYFFS
Sbjct:    69 DSNHSVVQTYDFKTYKDCDYDNNENNDTTEWSAANPSATSPVPVSISVPLVKEGSNYFFS 128

Query:   129 DAEDGLQCQRGVAFEISVNRG 149
                DG QC+ G  F I+V  G
Sbjct:   129 GNYDGEQCKFGQHFMINVTHG 149


>TAIR|locus:2062525 [details] [associations]
            symbol:UCC1 "uclacyanin 1" species:3702 "Arabidopsis
            thaliana" [GO:0005507 "copper ion binding" evidence=IEA;ISS]
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0009055 "electron
            carrier activity" evidence=IEA] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0048765 "root hair cell differentiation"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            InterPro:IPR000923 InterPro:IPR003245 Pfam:PF02298 ProDom:PD003122
            PROSITE:PS00196 PROSITE:PS51485 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009055 GO:GO:0031225 GO:GO:0005507
            Gene3D:2.60.40.420 InterPro:IPR008972 SUPFAM:SSF49503 EMBL:AC005700
            EMBL:U76298 IPI:IPI00529571 PIR:D84731 RefSeq:NP_180789.1
            UniGene:At.10754 HSSP:P29602 ProteinModelPortal:O82081 SMR:O82081
            EnsemblPlants:AT2G32300.1 GeneID:817791 KEGG:ath:AT2G32300
            TAIR:At2g32300 eggNOG:NOG247256 HOGENOM:HOG000090728
            InParanoid:O82081 OMA:ATDHTIG ProtClustDB:CLSN2913010
            Genevestigator:O82081 Uniprot:O82081
        Length = 261

 Score = 106 (42.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query:     8 LTVIALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLI 67
             L +I++L T +   T AT   +HT+GGP+GW+  A       +  +WAA QT+ +GD L+
Sbjct:     7 LIIISVLATTLIGLTVAT---DHTIGGPSGWTVGA-------SLRTWAAGQTFAVGDNLV 56

Query:    68 FN 69
             F+
Sbjct:    57 FS 58

 Score = 55 (24.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query:   116 VPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
             VPLTT G  YF         C +G+  E++V
Sbjct:    93 VPLTTPGKRYFICGMPG--HCSQGMKLEVNV 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       179   0.00089  109 3  11 22  0.44    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.88u 0.10s 13.98t   Elapsed:  00:00:01
  Total cpu time:  13.88u 0.10s 13.98t   Elapsed:  00:00:01
  Start:  Thu May  9 19:01:07 2013   End:  Thu May  9 19:01:08 2013

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