BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027953
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNEXXXX 86
T H VG GW+ + +Y+ WA++ +++GD L+FN N V+Q E
Sbjct: 3 TVHKVGDSTGWT-----TLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKS 57
Query: 87 XXXXXXXXXXXXFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
Y G + ++PL GT YF CQ G EI V
Sbjct: 58 CNSSSPAAS-----YTSGAD--------SIPLKRPGTFYFLCGIPG--HCQLGQKVEIKV 102
Query: 147 NRG 149
+ G
Sbjct: 103 DPG 105
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFN 69
T H VG GWS + N YS WAA +T+ +GD L FN
Sbjct: 4 TVHIVGDNTGWSVPSSPNF----YSQWAAGKTFRVGDSLQFN 41
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 30 HTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNE 82
+ VGG GW+F N SW + + GD L+FN N + + N+
Sbjct: 3 YVVGGSGGWTF---------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQ 46
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 220 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 263
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 220 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 263
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 221 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 264
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 198 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 241
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 221 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 264
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 220 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 263
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 222 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 265
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 14 LITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
++ + DTP Y N+TV WS A N+ + + +N+GDY+
Sbjct: 223 VVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRD---------FNVGDYI 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,804
Number of Sequences: 62578
Number of extensions: 181070
Number of successful extensions: 403
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 16
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)