BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027953
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 24/122 (19%)
Query: 7 NLTVIALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYL 66
N V+ L+ ++ P+ A T +TVG +GW + +YS+WA+++T+ +GD L
Sbjct: 5 NALVLCFLLAIINMALPSLA-TVYTVGDTSGW-------VIGGDYSTWASDKTFAVGDSL 56
Query: 67 IFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIA--VPLTTTGTN 124
+FN + E+ + SCT+ GN + T A +PL G +
Sbjct: 57 VFNYGAGAHTVDEVKESDYKSCTS--------------GNSISTDSTGATTIPLKKAGKH 102
Query: 125 YF 126
YF
Sbjct: 103 YF 104
>sp|Q39131|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
Length = 172
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 32/160 (20%)
Query: 3 TILLNLTVIALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNL 62
T+L+ V+A L+ A+ P +TVG W+ NI NY+ WA + + L
Sbjct: 5 TVLITAVVLAFLM---AAPMPGVTAKKYTVGENKFWN----PNI---NYTIWAQGKHFYL 54
Query: 63 GDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTG 122
GD+L F + NQ I N+T + C D + T G G + V L T
Sbjct: 55 GDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWT---RGAGRDI-------VTLNQT- 103
Query: 123 TNYFFSDAEDGLQCQRGVAFEISVNRGLGLPPSLNQPPPP 162
+Y+ D + G C G+ + V + PPPP
Sbjct: 104 KHYYLLDGKGG--CYGGMKLSVKVEK---------LPPPP 132
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1
Length = 108
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSS 87
T H VG GW+ + +Y+ WA++ +++GD L+FN N + ++ F S
Sbjct: 2 TVHKVGDSTGWT-----TLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKS 56
Query: 88 CTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147
C + + Y G + ++PL GT YF CQ G EI V+
Sbjct: 57 CNSSSPAAS----YTSGAD--------SIPLKRPGTFYFLCGIPG--HCQLGQKVEIKVD 102
Query: 148 RG 149
G
Sbjct: 103 PG 104
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1
Length = 187
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 34/145 (23%)
Query: 10 VIALLITVVASDTPATAYTNHTVGG-PAGWSF-----DAINNISATNYSSWAANQTYNLG 63
++ L + ++ S + A Y VGG W F D++ S WA + + +G
Sbjct: 12 LVMLAMCLLISTSEAEKYV---VGGSEKSWKFPLSKPDSL--------SHWANSHRFKIG 60
Query: 64 DYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFH--YNGGGNEFGQNVTIAVPLTTT 121
D LIF + NET + C T +H +NGG + V LT
Sbjct: 61 DTLIFKYEKRTESVHEGNETDYEGCNTVGK-----YHIVFNGGNTK--------VMLTKP 107
Query: 122 GTNYFFSDAEDGLQCQRGVAFEISV 146
G +F S + CQ G+ + V
Sbjct: 108 GFRHFISGNQS--HCQMGLKLAVLV 130
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1
Length = 202
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 43 INNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSC----TTDDASDDDT 98
I + +YS WA +T+ +GD L F ++ TV ++ + C +T++ SD DT
Sbjct: 34 IEWTTGVDYSGWATGKTFRVGDILEFKYGSSHTV-DVVDKAGYDGCDASSSTENHSDGDT 92
Query: 99 FHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149
+ L T G NYF + G+ ++V G
Sbjct: 93 ----------------KIDLKTVGINYFICSTPGHCRTNGGMKLAVNVVAG 127
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1
Length = 96
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 30 HTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCT 89
+ VGG GW+F N SW + + GD L+FN N + N+ FS+C
Sbjct: 3 YVVGGSGGWTF---------NTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCN 53
Query: 90 T 90
T
Sbjct: 54 T 54
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060
PE=1 SV=2
Length = 182
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 24/153 (15%)
Query: 31 TVGGPAG-WSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCT 89
TVGG +G W I S+ +++ WA + +GD+++F + + + + ++SC
Sbjct: 32 TVGGKSGDWK---IPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCN 88
Query: 90 TDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149
T + + Y G + V L +G YF S A C++G + V
Sbjct: 89 TTNPLAN----YTDGETK--------VKLDRSGPFYFISGANG--HCEKGQKLSLVV--- 131
Query: 150 LGLPPSLNQPPPPPYIEPPGPETSQMTPVNING 182
+ S+ P P P GP + P I+G
Sbjct: 132 ISPRHSVISPAPSPVEFEDGP---ALAPAPISG 161
>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3
Length = 137
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNETTFS 86
T H VG GWS + N YS WAA +T+ +GD L FN N V + + +F
Sbjct: 3 TVHIVGDNTGWSVPSSPNF----YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFD 58
Query: 87 SCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
+C + N+ + + L G +YF G C G I+V
Sbjct: 59 ACN-----------FVNSDNDVERTSPVIERLDELGMHYFVCTV--GTHCSNGQKLSINV 105
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1
Length = 107
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSS 87
T +TVG AGW ++ WA+N+T+++GD L+F + + + + S
Sbjct: 1 TVYTVGDSAGWKVPFFGDVDYD--WKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQS 58
Query: 88 C--TTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEIS 145
C TT AS YN G B + L T G Y+ C G I+
Sbjct: 59 CNDTTPIAS------YNTGBBR--------INLKTVGQKYYICGVPK--HCDLGQKVHIN 102
Query: 146 V 146
V
Sbjct: 103 V 103
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a
PE=1 SV=3
Length = 1274
Score = 36.6 bits (83), Expect = 0.14, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 153 PPSLNQPPPPPYIEPPGPETSQMTPVNIN-GGSPEIDNS 190
P S PP PPY P P TPV I+ G +P + N+
Sbjct: 261 PASQQTPPLPPYASPRSPPVQPHTPVTISLGTAPSLQNN 299
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A
PE=1 SV=2
Length = 1273
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 153 PPSLNQPPPPPYIEPPGPETSQMTPVNIN-GGSPEIDNS 190
P S PP PPY P P TPV I+ G +P + N+
Sbjct: 261 PASQQTPPLPPYASPRSPPVQPHTPVTISLGTAPSLQNN 299
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1
Length = 180
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 47 SATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGN 106
S ++ WA+ + +GD ++F + + NE + C T+ + H++G
Sbjct: 42 SRRAFARWASAHEFTVGDTILFEYDNETESVHEVNEHDYIMCHTN---GEHVEHHDG--- 95
Query: 107 EFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV--NRGLGLPP 154
V L G +F S + C+ G+ + V L LPP
Sbjct: 96 ------NTKVVLDKIGVYHFISGTKR--HCKMGLKLAVVVQNKHDLVLPP 137
>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2
Length = 196
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 51 YSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQ 110
Y++WA +T+ +GD L F+ + + +E F +C + T
Sbjct: 42 YTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVP---------- 91
Query: 111 NVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
+ + L TTG YF D C+ G I+V
Sbjct: 92 --PVKIMLNTTGPQYFICTVGD--HCRFGQKLSITV 123
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1
Length = 268
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 52 SSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQN 111
+ WA+N + +GD + F N + E + C D HY+G
Sbjct: 47 TRWASNYQFIVGDTITFQYNNKTESVHEVEEEDYDRCGIRGEHVD---HYDGNT------ 97
Query: 112 VTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
V L TG ++F S + C+ G+ + V
Sbjct: 98 ---MVVLKKTGIHHFISGKKR--HCRLGLKLAVVV 127
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 34.7 bits (78), Expect = 0.55, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 20 SDTPATAYTNHTVGG---------PAGWS----FDAINNISAT----NYSSWAANQTYNL 62
SD PA Y + G P GW FD IN +A N + A Q
Sbjct: 522 SDFPAHRYRCVSAGDQWLVRPVYDPQGWDRDVGFDGINIETAAKINRNLFASATGQVSRD 581
Query: 63 GDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNE---FGQNVT-IAVPL 118
+ TN + + E TFS +S +D + GG + F N T + V L
Sbjct: 582 KQRFTIQSETNAAYTRNFREQTFSVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGL 641
Query: 119 TTTGTNYF 126
T+ G Y+
Sbjct: 642 TSFGGKYY 649
>sp|P60496|BABL_LILLO Chemocyanin OS=Lilium longiflorum PE=1 SV=1
Length = 126
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 34/121 (28%)
Query: 30 HTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCT 89
+TVG GW+F S W A +T+ GD L+F N + + + SCT
Sbjct: 33 YTVGDGGGWTFGT---------SGWPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSCT 83
Query: 90 TDDA-----SDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEI 144
S DD +T+ + GTNYF CQ G+ +
Sbjct: 84 ASPGSRVFKSGDD-------------RITL-----SRGTNYFICSVPG--HCQGGLKIAV 123
Query: 145 S 145
+
Sbjct: 124 T 124
>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2
Length = 129
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 8 LTVIALLITVVASDTPATAYTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLI 67
+T++A+ + ++ +D A +TVG W+F+A+ W + + GD L+
Sbjct: 16 VTLMAVSVLLLQADYVQAA--TYTVGDSGIWTFNAV---------GWPKGKHFRAGDVLV 64
Query: 68 FNTNTNQTVIQTYNETTFSSCTT 90
FN N + + ++++C T
Sbjct: 65 FNYNPRMHNVVKVDSGSYNNCKT 87
>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1
Length = 884
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 54 WAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDD-TFHYNGGGNEFGQ-- 110
W +Y+ + + + N + QT N + +D+SDDD +FH GGG+++
Sbjct: 271 WDNASSYSTKEIVSVHENDEE---QTVNSVSVPVVVINDSSDDDESFHSVGGGSQYSNPR 327
Query: 111 --NVTIAVPLTTTGTNYFFSDAE-DGLQCQRGVAFEISVN 147
N + A G++ FS+ + D +C R F ISV+
Sbjct: 328 LSNASSASGSVNVGSSQRFSEHKLDIPECSRS-DFGISVS 366
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520
PE=1 SV=1
Length = 349
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 32 VGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTD 91
VGG W + N NY SW+ + + D L F+ + N+ + +C T
Sbjct: 33 VGGSGAW----VTN-PPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNT- 86
Query: 92 DASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISV 146
+ + G +E + L G YF S ED C++G + V
Sbjct: 87 ---KNPIKRVDDGDSE--------ISLDRYGPFYFISGNED--NCKKGQKLNVVV 128
>sp|Q8WXE0|CSKI2_HUMAN Caskin-2 OS=Homo sapiens GN=CASKIN2 PE=1 SV=2
Length = 1202
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 152 LPPSLNQPPPPPYIEPPGPET-SQMTPVNINGGSPEIDNSALRS 194
L P ++ P PP EPP P T SQ+ V ++ SP D +++ S
Sbjct: 363 LRPGFSRTPQPPAEEPPHPLTYSQLPRVGLSPDSPAGDRNSVGS 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,382,400
Number of Sequences: 539616
Number of extensions: 4233856
Number of successful extensions: 20189
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 18754
Number of HSP's gapped (non-prelim): 1276
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)