Query 027953
Match_columns 216
No_of_seqs 185 out of 867
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.3E-40 4.6E-45 268.7 6.5 108 27-152 3-112 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.7E-38 5.7E-43 247.1 6.2 106 27-151 2-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 1.5E-37 5E-42 244.2 6.5 105 28-150 2-107 (116)
4 2cbp_A Cucumber basic protein; 100.0 3.8E-36 1.3E-40 228.8 6.2 96 28-147 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 7.3E-32 2.5E-36 203.4 7.6 91 28-147 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 6.1E-11 2.1E-15 93.3 9.2 102 26-147 15-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.0 5.8E-10 2E-14 80.6 8.1 86 29-147 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.0 1.2E-09 4.2E-14 88.4 7.2 85 57-147 62-154 (154)
9 1pmy_A Pseudoazurin; electron 98.9 5.6E-09 1.9E-13 81.7 8.1 84 33-148 11-94 (123)
10 1paz_A Pseudoazurin precursor; 98.9 6.1E-09 2.1E-13 81.5 7.9 84 33-148 11-94 (123)
11 2aan_A Auracyanin A; cupredoxi 98.9 2.4E-08 8.1E-13 78.4 11.3 100 26-147 17-139 (139)
12 3erx_A Pseudoazurin; copper pr 98.8 1.3E-08 4.3E-13 79.9 6.6 74 56-148 21-94 (123)
13 3tu6_A Pseudoazurin (blue copp 98.7 2.3E-08 7.7E-13 78.9 7.0 84 33-148 12-96 (127)
14 1kdj_A Plastocyanin; electron 98.7 1.5E-08 5.2E-13 74.9 5.4 95 29-147 2-102 (102)
15 3ef4_A Pseudoazurin, blue copp 98.7 4.3E-08 1.5E-12 77.1 8.0 84 33-148 10-95 (124)
16 1plc_A Plastocyanin; electron 98.7 8.7E-08 3E-12 70.5 9.0 93 29-147 2-99 (99)
17 1iuz_A Plastocyanin; electron 98.7 2.1E-08 7.1E-13 74.2 5.5 91 29-147 3-98 (98)
18 2gim_A Plastocyanin; beta shee 98.7 7.9E-08 2.7E-12 71.3 8.7 90 29-147 5-105 (106)
19 1b3i_A PETE protein, protein ( 98.6 5.5E-08 1.9E-12 71.2 5.8 89 29-147 4-97 (97)
20 2plt_A Plastocyanin; electron 98.6 5.9E-08 2E-12 71.1 5.5 91 29-147 3-98 (98)
21 1byp_A Protein (plastocyanin); 98.6 2.8E-07 9.6E-12 67.6 8.6 93 29-147 2-99 (99)
22 1pcs_A Plastocyanin; electron 98.4 9E-07 3.1E-11 64.8 7.2 90 29-147 4-98 (98)
23 4hci_A Cupredoxin 1; structura 98.2 9.6E-07 3.3E-11 65.4 4.0 70 56-147 28-100 (100)
24 3ay2_A Lipid modified azurin p 98.0 8.4E-06 2.9E-10 67.1 6.7 99 27-147 42-166 (167)
25 3c75_A Amicyanin; copper prote 98.0 1E-05 3.4E-10 63.4 6.3 72 56-147 60-132 (132)
26 2ux6_A Pseudoazurin; type-1 co 98.0 1.6E-05 5.6E-10 61.7 6.9 72 56-148 21-92 (122)
27 3cvb_A Plastocyanin; cupredoxi 97.9 2.5E-05 8.7E-10 57.3 6.8 93 29-147 4-104 (105)
28 1cuo_A Protein (azurin ISO-2); 97.9 8.1E-05 2.8E-09 58.5 9.6 97 29-147 4-128 (129)
29 1iko_P Ephrin-B2; greek KEY, g 97.7 3.2E-05 1.1E-09 64.5 5.4 88 59-151 25-143 (178)
30 2ov0_A Amicyanin; beta-sandwic 97.7 4.7E-05 1.6E-09 56.8 5.6 87 27-147 18-105 (105)
31 1id2_A Amicyanin; beta barrel, 97.6 0.0001 3.4E-09 55.3 6.3 72 56-147 34-106 (106)
32 2iaa_C Azurin; quinoprotein, t 97.5 0.00028 9.7E-09 55.3 8.0 32 113-147 93-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.5 0.0003 1E-08 55.2 8.1 32 113-147 94-128 (129)
34 1nwp_A Azurin; electron transp 97.5 0.00026 8.8E-09 55.6 7.7 98 29-147 4-128 (128)
35 1iby_A Nitrosocyanin; RED copp 97.1 0.00071 2.4E-08 50.5 5.2 69 57-147 39-111 (112)
36 2vsm_B Ephrin-B2; developmenta 96.8 0.003 1E-07 50.6 7.0 88 59-148 24-139 (140)
37 2x11_B Ephrin-A5; receptor-sig 96.6 0.0015 5.1E-08 54.3 3.9 89 58-151 52-165 (177)
38 3czu_B Ephrin-A1; ATP-binding, 96.1 0.009 3.1E-07 49.8 5.8 91 57-152 49-164 (182)
39 2cua_A Protein (CUA); CUA cent 96.0 0.024 8E-07 44.5 7.8 69 57-147 61-134 (135)
40 3d12_B Ephrin-B3; beta propell 95.7 0.0084 2.9E-07 48.1 4.1 88 58-147 22-140 (141)
41 1shx_A Ephrin-A5; ephrin signa 95.7 0.0082 2.8E-07 48.0 3.7 88 58-150 23-135 (138)
42 3fsa_A Azurin; copper, cupredo 94.8 0.22 7.4E-06 39.0 9.3 29 113-147 94-125 (125)
43 3s8f_B Cytochrome C oxidase su 94.5 0.15 5.1E-06 41.7 8.2 70 56-147 93-167 (168)
44 2dv6_A Nitrite reductase; elec 93.8 0.14 4.8E-06 46.4 7.4 76 56-150 55-134 (447)
45 2wo3_B Ephrin-A2; transferase- 93.6 0.043 1.5E-06 44.7 3.2 88 58-150 32-145 (157)
46 3sbq_A Nitrous-oxide reductase 92.1 0.26 8.8E-06 47.9 6.8 71 56-148 558-637 (638)
47 1fwx_A Nitrous oxide reductase 91.7 0.48 1.6E-05 45.7 8.2 72 57-148 514-592 (595)
48 1mzy_A Copper-containing nitri 82.0 3 0.0001 36.2 6.8 82 58-152 66-156 (333)
49 1oe1_A Dissimilatory copper-co 81.6 3.2 0.00011 36.0 6.8 83 58-152 67-156 (336)
50 1kbv_A ANIA, major outer membr 81.1 2.8 9.5E-05 36.6 6.2 39 112-150 119-158 (327)
51 2zoo_A Probable nitrite reduct 76.7 3.1 0.00011 37.5 5.3 83 57-151 61-149 (442)
52 3gdc_A Multicopper oxidase; be 74.7 7.4 0.00025 33.2 6.9 39 112-150 117-156 (288)
53 3hei_B Ephrin-A1; EPH receptor 71.9 1.3 4.6E-05 34.8 1.3 35 58-92 22-67 (132)
54 1oe1_A Dissimilatory copper-co 71.4 6.4 0.00022 34.1 5.8 36 112-149 283-319 (336)
55 1mzy_A Copper-containing nitri 64.6 5.3 0.00018 34.6 3.8 34 113-148 284-318 (333)
56 1cyx_A CYOA; electron transpor 64.3 6.3 0.00022 33.1 4.0 31 113-147 82-115 (205)
57 3gdc_A Multicopper oxidase; be 62.1 4.8 0.00016 34.4 3.0 34 113-148 255-288 (288)
58 3t9w_A Small laccase, multi-co 59.4 16 0.00054 31.4 5.9 32 119-152 260-291 (299)
59 3hb3_B Cytochrome C oxidase su 59.3 8 0.00027 34.1 4.0 32 113-148 230-264 (298)
60 3g5w_A Multicopper oxidase typ 59.2 36 0.0012 29.4 8.2 37 112-149 88-126 (318)
61 1sdd_A Coagulation factor V; c 58.2 1.7 5.9E-05 37.6 -0.5 34 113-148 267-300 (306)
62 2gsm_B Cytochrome C oxidase su 58.1 8.8 0.0003 33.0 4.0 32 113-148 212-246 (262)
63 3kw8_A Laccase, putative coppe 56.5 12 0.00043 31.6 4.6 37 113-151 229-268 (276)
64 4i1k_A B3 domain-containing tr 56.2 3.5 0.00012 32.5 1.0 28 53-80 110-137 (146)
65 2q9o_A Laccase-1; multicopper 56.1 47 0.0016 31.1 8.9 35 112-148 123-157 (559)
66 1zpu_A Iron transport multicop 55.8 52 0.0018 30.6 9.1 36 112-149 89-125 (534)
67 1v54_B Cytochrome C oxidase po 55.5 8.6 0.00029 32.4 3.4 32 113-148 181-215 (227)
68 3cg8_A Laccase; oxidoreductase 55.1 10 0.00036 33.3 4.0 38 113-152 270-310 (343)
69 1fft_B Ubiquinol oxidase; elec 54.9 1.1E+02 0.0037 27.0 10.6 69 57-147 152-225 (315)
70 3pxl_A Laccase; 4-copper prote 54.2 66 0.0022 29.8 9.5 36 112-149 93-129 (499)
71 3t6v_A Laccase; beta barrel, o 53.2 71 0.0024 29.5 9.5 36 112-149 94-130 (495)
72 1kbv_A ANIA, major outer membr 48.2 18 0.0006 31.4 4.3 35 113-149 273-308 (327)
73 3tas_A Small laccase, multi-co 47.7 1.2E+02 0.0042 25.8 9.7 31 120-152 245-275 (313)
74 1yel_A AT1G16640; CESG, protei 45.5 8.3 0.00028 28.0 1.5 19 55-73 73-91 (104)
75 3iuw_A Activating signal coint 44.8 9.7 0.00033 27.6 1.7 15 58-72 36-51 (83)
76 2z0t_A Putative uncharacterize 42.0 9.6 0.00033 28.8 1.4 26 58-86 32-58 (109)
77 2zoo_A Probable nitrite reduct 38.1 32 0.0011 30.8 4.5 36 113-150 263-299 (442)
78 2bw4_A Copper-containing nitri 37.6 26 0.0009 30.2 3.8 40 112-151 120-161 (340)
79 2r7e_B Coagulation factor VIII 36.4 50 0.0017 32.4 5.9 38 113-150 252-299 (770)
80 2bw4_A Copper-containing nitri 34.4 59 0.002 27.9 5.5 35 112-148 289-324 (340)
81 1sdd_B Coagulation factor V; c 33.3 25 0.00084 33.4 3.0 34 113-148 294-327 (647)
82 4he6_A Peptidase family U32; u 32.2 35 0.0012 24.0 3.0 25 56-80 26-50 (89)
83 1hfu_A Laccase 1; oxidoreducta 31.9 1E+02 0.0035 28.2 7.0 83 59-148 376-470 (503)
84 4dny_A Metalloprotease STCE; m 31.0 22 0.00075 27.7 1.9 16 58-73 100-115 (126)
85 1sdd_A Coagulation factor V; c 30.6 1E+02 0.0035 26.2 6.3 38 112-149 120-167 (306)
86 3zx1_A Oxidoreductase, putativ 30.4 36 0.0012 31.4 3.6 33 113-147 448-480 (481)
87 3g5w_A Multicopper oxidase typ 27.9 71 0.0024 27.5 4.9 34 113-148 237-276 (318)
88 2qcp_X Cation efflux system pr 27.7 26 0.00088 24.6 1.7 19 54-72 48-66 (80)
89 4dz1_A DALS D-alanine transpor 27.6 22 0.00075 28.2 1.4 15 25-39 26-40 (259)
90 2vb2_X Copper protein, cation 27.4 26 0.00089 25.1 1.7 21 52-72 54-74 (88)
91 2laa_A Beta/alpha-amylase; SBD 27.4 35 0.0012 25.4 2.4 44 30-74 22-66 (104)
92 1aoz_A Ascorbate oxidase; oxid 26.7 95 0.0033 28.7 5.8 37 112-150 89-125 (552)
93 3t6v_A Laccase; beta barrel, o 25.8 1.6E+02 0.0054 27.1 7.1 33 113-147 438-470 (495)
94 1v10_A Laccase; multicopper bl 25.8 1.8E+02 0.0061 26.7 7.5 83 59-148 400-491 (521)
95 2xu9_A Laccase; oxidoreductase 25.5 1.1E+02 0.0038 27.3 5.9 79 59-148 50-135 (439)
96 2dv6_A Nitrite reductase; elec 25.1 70 0.0024 28.4 4.4 34 113-148 400-433 (447)
97 1xne_A Hypothetical protein PF 24.9 18 0.00062 27.4 0.4 11 58-68 33-43 (113)
98 2zwn_A Two-domain type laccase 23.7 1.1E+02 0.0036 26.5 5.2 38 112-149 89-127 (339)
99 3kw8_A Laccase, putative coppe 23.0 1.5E+02 0.0053 24.6 6.0 39 113-151 88-143 (276)
100 3tas_A Small laccase, multi-co 22.7 1.3E+02 0.0044 25.7 5.5 30 120-149 114-147 (313)
101 3sqr_A Laccase; multicopper ox 22.6 1.1E+02 0.0038 28.9 5.5 38 110-149 151-188 (580)
102 1aoz_A Ascorbate oxidase; oxid 22.4 1.5E+02 0.0052 27.4 6.3 35 113-149 492-526 (552)
103 2k75_A Uncharacterized protein 22.3 41 0.0014 24.5 1.9 30 28-69 40-69 (106)
104 2zwn_A Two-domain type laccase 21.8 1.1E+02 0.0039 26.3 5.0 34 113-148 238-277 (339)
105 3nb3_A Outer membrane protein 21.7 17 0.00057 31.0 -0.4 38 1-40 1-38 (346)
106 2j5w_A Ceruloplasmin, ferroxid 21.6 86 0.0029 31.8 4.7 83 57-151 272-359 (1065)
107 2z0b_A GDE5, KIAA1434, putativ 21.2 42 0.0014 25.5 1.8 44 27-70 23-73 (131)
108 3tbn_A Putative uncharacterize 20.6 93 0.0032 22.6 3.5 16 114-130 20-35 (87)
109 4doo_A Chalcone-flavanone isom 20.5 81 0.0028 25.5 3.6 29 53-81 133-161 (205)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.3e-40 Score=268.71 Aligned_cols=108 Identities=26% Similarity=0.497 Sum_probs=97.0
Q ss_pred ceEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEe-CcccCCCCCCCCCCCCCcceecCCC
Q 027953 27 YTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTY-NETTFSSCTTDDASDDDTFHYNGGG 105 (216)
Q Consensus 27 a~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V-~k~~Yd~C~~~~~~~~~~~~~~~G~ 105 (216)
+++|+|||+.||++++. ..||++||++++|+|||+|+|+|..++|+|+|| +|++|+.|+.++++. .+++|+
T Consensus 3 a~~~~VGg~~GW~~~~~----~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~----~~~~G~ 74 (138)
T 1jer_A 3 STVHIVGDNTGWSVPSS----PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDN----DVERTS 74 (138)
T ss_dssp CCEEETTGGGCSSCCSS----TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCC----CCCCCS
T ss_pred ceEEEECCcCcCcCCCC----ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccc----cccCCC
Confidence 56999999999999852 378999999999999999999999998999999 999999999887653 788998
Q ss_pred CccccceeEEEEe-ccccceEEEecCCCcccccCCCeEEEEeeCCCCC
Q 027953 106 NEFGQNVTIAVPL-TTTGTNYFFSDAEDGLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 106 ~~f~~~~t~~V~L-~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~~ 152 (216)
+. |+| +++|++||||+++ +||++||||+|+|....+.
T Consensus 75 ~~--------v~L~~~~G~~YFicg~~--gHC~~GmKl~I~V~~~~~~ 112 (138)
T 1jer_A 75 PV--------IERLDELGMHYFVCTVG--THCSNGQKLSINVVAANAT 112 (138)
T ss_dssp CE--------EEECCSSEEEEEECCST--TTGGGTCEEEEEEECCC--
T ss_pred eE--------EEeccCCcCEEEEcCCC--CccccCCEEEEEEcCCCCC
Confidence 86 999 9999999999998 9999999999999886653
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.7e-38 Score=247.06 Aligned_cols=106 Identities=31% Similarity=0.648 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCC
Q 027953 27 YTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGN 106 (216)
Q Consensus 27 a~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~ 106 (216)
+++|+|||+.||++++ ..+|++||++++|++||+|+|+|.++.|+|+||++++|+.|+.++++ ..+++|++
T Consensus 2 a~~~~VG~~~GW~~~~-----~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~----~~~~~G~~ 72 (109)
T 1ws8_A 2 ATVHKVGDSTGWTTLV-----PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPA----ASYTSGAD 72 (109)
T ss_dssp CCEEETTGGGCSCSSS-----CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCS----EEECSSEE
T ss_pred CcEEEeCCCCCccCCC-----CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcc----cccCCCCE
Confidence 4699999999999974 37899999999999999999999999899999999999999988764 48889988
Q ss_pred ccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEeeCCCC
Q 027953 107 EFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 107 ~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~ 151 (216)
. |+|+++|++||||+++ +||++||||+|+|.+..+
T Consensus 73 ~--------v~L~~~G~~yFic~~~--gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 73 S--------IPLKRPGTFYFLCGIP--GHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp E--------EECCSSEEEEEECCST--TTTTTTCEEEEEECC---
T ss_pred E--------EEECCCcCEEEECCCC--CcccCCCEEEEEEcCCCC
Confidence 6 9999999999999998 999999999999976543
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.5e-37 Score=244.23 Aligned_cols=105 Identities=24% Similarity=0.488 Sum_probs=93.1
Q ss_pred eEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCc
Q 027953 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNE 107 (216)
Q Consensus 28 ~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~ 107 (216)
++|+|||+.||+++. ...+|++||++++|++||+|+|+|.+++|+|+||+|++|+.|+..+++ ..+++|++.
T Consensus 2 ~~~~VG~~~GW~~~~----~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~----~~~~~G~~~ 73 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPS----DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI----SHMTTPPVK 73 (116)
T ss_dssp CEEETTGGGCSSCCS----STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCS----EEECSSSEE
T ss_pred eEEEECCcCcCcCCC----CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCc----cccCCCCeE
Confidence 489999999999862 137899999999999999999999998899999999999999988754 478899876
Q ss_pred cccceeEEEEeccccceEEEecCCCcccccCCCeEEE-EeeCCC
Q 027953 108 FGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEI-SVNRGL 150 (216)
Q Consensus 108 f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I-~V~~~~ 150 (216)
|+|+++|++||||+++ +||++||||+| +|.+..
T Consensus 74 --------v~l~~~G~~yFic~~~--~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 74 --------IMLNTTGPQYYICTVG--DHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp --------EECCSCEEEEEECCST--TTTTTTCEEEEEEECC--
T ss_pred --------EEECCCCCEEEECCCC--CccccCCEEEEEEECCCC
Confidence 9999999999999998 99999999999 776544
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=3.8e-36 Score=228.81 Aligned_cols=96 Identities=29% Similarity=0.646 Sum_probs=88.4
Q ss_pred eEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCc
Q 027953 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNE 107 (216)
Q Consensus 28 ~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~ 107 (216)
++|+|||+.||+++ |++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++ ..+++|++.
T Consensus 1 ~~~~VG~~~GW~~~---------y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~----~~~~~G~~~ 67 (96)
T 2cbp_A 1 AVYVVGGSGGWTFN---------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA----KVYTSGRDQ 67 (96)
T ss_dssp CEEETTGGGCSCSS---------CTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTC----EEECSSEEE
T ss_pred CEEEECCcCCCccC---------hhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCc----ccccCCCeE
Confidence 37999999999963 99999999999999999999999899999999999999988754 478899886
Q ss_pred cccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 108 FGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 108 f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|+| ++|++||||+++ +||++||||+|+|+
T Consensus 68 --------v~L-~~g~~yFic~~~--~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 68 --------IKL-PKGQSYFICNFP--GHCQSGMKIAVNAL 96 (96)
T ss_dssp --------EEC-CSEEEEEECCST--TTGGGTCEEEEEEC
T ss_pred --------EEe-cCCCEEEEcCCC--CccccCCEEEEEEC
Confidence 899 899999999998 99999999999984
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.97 E-value=7.3e-32 Score=203.43 Aligned_cols=91 Identities=26% Similarity=0.555 Sum_probs=82.3
Q ss_pred eEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCc
Q 027953 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNE 107 (216)
Q Consensus 28 ~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~ 107 (216)
++|+| ||+++ ++|+++++|++||+|+|+|.+++|+|+||++++|+.|+.++++ ..+++|++.
T Consensus 1 ~~y~V----gW~~~----------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~----~~~~~G~~~ 62 (91)
T 1f56_A 1 AVYNI----GWSFN----------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGA----RTYSSGQDR 62 (91)
T ss_dssp CEEEE----ECSSS----------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTC----EEECSSEEE
T ss_pred CEEEE----eCCCC----------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCc----ccccCCCcE
Confidence 37999 89963 7999999999999999999999899999999999999988764 478899886
Q ss_pred cccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 108 FGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 108 f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|+|+ +|++||||+++ +||++||||+|+|.
T Consensus 63 --------v~L~-~g~~yFic~~~--~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 63 --------IKLT-RGQNYFICSFP--GHCGGGMKIAINAK 91 (91)
T ss_dssp --------EECC-SEEEEEECCST--TTTTTTCEEEEEEC
T ss_pred --------EEeC-CCCeEEEcCCC--CccccCCEEEEEEC
Confidence 8995 89999999998 99999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.20 E-value=6.1e-11 Score=93.30 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=65.2
Q ss_pred cceEEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-----CCceEEEeCcc-cCCCC----------
Q 027953 26 AYTNHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-----NQTVIQTYNET-TFSSC---------- 88 (216)
Q Consensus 26 ~a~~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-----~~h~V~~V~k~-~Yd~C---------- 88 (216)
...++.|+-. .+|.+.| +..+++.||++.|+|.+ ..|++...... ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P-------------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQ-------------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNAD 81 (140)
T ss_dssp CSEEEEEEBCSSSSSBSC-------------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGG
T ss_pred CCEEEEEEEeCCCceEeC-------------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccc
Confidence 3457777754 4699875 45789999999999865 35665555321 22111
Q ss_pred ----CCCCCCC--CCcceecCCCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 89 ----TTDDASD--DDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 89 ----~~~~~~~--~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
...+... ..+.....|.+ .++.|+++++|.|||+|+.. +||+.|||..|+|.
T Consensus 82 ~~~~~~~~~~~~~~~t~~l~pG~~-----~~~~~~~~~~G~y~f~C~~~--~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 82 ALFVPPPDTPNALAWTAMLNAGES-----GSVTFRTPAPGTYLYICTFP--GHYLAGMKGTLTVT 139 (140)
T ss_dssp GTTCCCTTCTTEEEECCCBCTTEE-----EEEEEECCSSEEEEEECCST--TTTTTTCEEEEEEE
T ss_pred ccccCccccccccccceeeCCCce-----eEEEEEeCCCeeEEEEeCCc--CHhhcCCEEEEEEc
Confidence 0000000 00012233433 35568888999999999998 89999999999995
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.05 E-value=5.8e-10 Score=80.61 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=59.6
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcccCCCCCCCCCCCCCcceecCCCC
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGN 106 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~ 106 (216)
+..+|++ .+|.+.| +..++++||+|.|++.. ..|+|.......+. . .......|.+
T Consensus 4 ~v~~~~~~~~~~f~P-------------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~--------~~~~~~~g~~ 61 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP-------------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H--------KDLAFSPGET 61 (91)
T ss_dssp EEEESCTTSCSSEES-------------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-E--------EEEECSTTCE
T ss_pred EEEEecCCCccEEeC-------------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-c--------ccceeCCCCE
Confidence 4566764 5688875 45689999999999875 57776644432221 0 0113344433
Q ss_pred ccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 107 EFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 107 ~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
+.++++++|.|+|+|. .||..||+..|.|.
T Consensus 62 -------~~~~f~~~G~y~~~C~----~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 62 -------FEATFSEPGTYTYYCE----PHRGAGMVGKIVVQ 91 (91)
T ss_dssp -------EEEECCSCEEEEEECT----TTGGGTCEEEEEEC
T ss_pred -------EEEEeCCCEEEEEEeC----CCccCCCEEEEEEC
Confidence 2478899999999999 39999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.95 E-value=1.2e-09 Score=88.36 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=57.8
Q ss_pred CCeeeeCCEEEEEEcCC----CceEEEeC-cccCCCCCCCCCCCCC---cceecCCCCccccceeEEEEeccccceEEEe
Q 027953 57 NQTYNLGDYLIFNTNTN----QTVIQTYN-ETTFSSCTTDDASDDD---TFHYNGGGNEFGQNVTIAVPLTTTGTNYFFS 128 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~----~h~V~~V~-k~~Yd~C~~~~~~~~~---~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC 128 (216)
..++++||+|+|++.+. .|++..++ ...|+.|......... ......|.+. ..++.+++ ++|.|||+|
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sg---t~t~tft~-~pGtY~y~C 137 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFG---YTDFTWHP-TAGTYYYVC 137 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEE---EEEEEECC-CSEEEEEEC
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCce---EEEEEEEE-CCceEEEEC
Confidence 46889999999999652 46666664 4578778754321000 0011233300 22556788 999999999
Q ss_pred cCCCcccccCCCeEEEEee
Q 027953 129 DAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 129 ~~~~g~HC~~GmKl~I~V~ 147 (216)
+.+ +||+.|||..|.|.
T Consensus 138 ~~~--gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 138 QIP--GMAATGMFGKIVVK 154 (154)
T ss_dssp CST--TTGGGTCEEEEEEC
T ss_pred CCC--CHHHCCCEEEEEEC
Confidence 998 99999999999883
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.87 E-value=5.6e-09 Score=81.67 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=57.0
Q ss_pred cCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccce
Q 027953 33 GGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNV 112 (216)
Q Consensus 33 Gg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~ 112 (216)
|++.++.+.| +..++++||+|.|.+....|+|... +.|...+... +....|.
T Consensus 11 g~~g~~~F~P-------------~~i~V~~GdtV~f~n~~~~H~v~~~-----~~~~p~~~~~---~~~~pG~------- 62 (123)
T 1pmy_A 11 GPGGMMVFDP-------------ALVRLKPGDSIKFLPTDKGHNVETI-----KGMAPDGADY---VKTTVGQ------- 62 (123)
T ss_dssp ETTEEEEEES-------------SEEEECTTCEEEEECSSSSCCCEEC-----TTSSCTTCCC---CBCCTTS-------
T ss_pred cCCCCceEeC-------------CEEEECCCCEEEEEECCCCcEEEEe-----cccCCCCccc---eecCCCC-------
Confidence 5555677775 4578999999999997655665432 2343332110 0112232
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
++.++++++|.|+|+|+ .||.+||+..|+|..
T Consensus 63 t~~~tF~~~G~y~y~C~----~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 63 EAVVKFDKEGVYGFKCA----PHYMMGMVALVVVGD 94 (123)
T ss_dssp CEEEECCSCEEEEEECS----TTTTTTCEEEEEESS
T ss_pred EEEEEeCCCeEEEEEeC----CccccCCEEEEEEcC
Confidence 23588999999999998 399999999999964
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.86 E-value=6.1e-09 Score=81.48 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=57.2
Q ss_pred cCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccce
Q 027953 33 GGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNV 112 (216)
Q Consensus 33 Gg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~ 112 (216)
|++.++.|.| +..++++||++.|.+....|+|... +.|...+.. .+..+.. .
T Consensus 11 g~~g~~~F~P-------------~~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~-----~~~~~pG-----~ 62 (123)
T 1paz_A 11 GAEGAMVFEP-------------AYIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAE-----KFKSKIN-----E 62 (123)
T ss_dssp ETTEEEEEES-------------SEEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCC-----CCBCCTT-----C
T ss_pred cCCCCceEeC-------------CEEEECCCCEEEEEECCCCeEEEEe-----cccCCCCcc-----ceecCCC-----C
Confidence 5555577765 4578999999999997655665431 234333211 1222211 1
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
++.++++++|.|+|+|+ .||++||+..|+|..
T Consensus 63 t~~~tF~~~G~y~y~C~----~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 63 NYVLTVTQPGAYLVKCT----PHYAMGMIALIAVGD 94 (123)
T ss_dssp CEEEECCSCEEEEEECT----TTGGGTCEEEEEESS
T ss_pred EEEEEeCCCEEEEEEeC----CcccCCCEEEEEEcC
Confidence 34588999999999998 399999999999964
No 11
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.86 E-value=2.4e-08 Score=78.38 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred cceEEEEcC-CCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC----CceEEEeCcc-----------------
Q 027953 26 AYTNHTVGG-PAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN----QTVIQTYNET----------------- 83 (216)
Q Consensus 26 ~a~~~~VGg-~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~----~h~V~~V~k~----------------- 83 (216)
+..+..||. ..++.+.| ...+++.||++.|++.+. .|++......
T Consensus 17 ~~~~V~v~~~~~~~~F~p-------------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~ 83 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK-------------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPA 83 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC-------------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGG
T ss_pred cCEEEEEEecCCccEEcC-------------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccc
Confidence 344666742 34677775 456899999999988643 5776655432
Q ss_pred -cCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 84 -TFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 84 -~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
+|..|...+... .+.....|.+ .++.++++++|.|+|+|... +||+ ||+..|.|.
T Consensus 84 ~~~~p~~~~~~~~-~t~~l~pGet-----~~v~f~~~~pG~y~f~C~~~--~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 84 ANYLPADKSNIIA-ESPLANGNET-----VEVTFTAPAAGTYLYICTVP--GHYP-LMQGKLVVN 139 (139)
T ss_dssp GTTCCSCCTTEEE-ECCCBCTTCE-----EEEEEECCSSEEEEEECCST--TTTT-TSEEEEEEC
T ss_pred ccccCcccccccc-cccccCCCCE-----EEEEEECCCCeEEEEEcCCC--ChHH-cCEEEEEEC
Confidence 455565322100 0112333433 24556666899999999998 9999 999999883
No 12
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.76 E-value=1.3e-08 Score=79.87 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=51.1
Q ss_pred cCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCccc
Q 027953 56 ANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQ 135 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~H 135 (216)
+..++++||++.|.+.+..|+|...+ .|...+.. .+..+.. .++.++++++|.|+|+|. .|
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~P~g~~-----~f~~~pg-----~t~s~TF~~pG~y~y~C~----~H 81 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIK-----EILPEGVE-----SFKSKIN-----ESYTLTVTEPGLYGVKCT----PH 81 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECT-----TSSCTTCC-----CCBCCTT-----CCEEEEECSCEEEEEECG----GG
T ss_pred CEEEECCCCEEEEEECCCCceEEEcC-----CcCCCCcc-----ceecCCC-----CEEEEEeCCCeEEEEEeC----CC
Confidence 46799999999999987556654321 13332211 1222211 134588899999999999 49
Q ss_pred ccCCCeEEEEeeC
Q 027953 136 CQRGVAFEISVNR 148 (216)
Q Consensus 136 C~~GmKl~I~V~~ 148 (216)
|..||+..|.|..
T Consensus 82 ~~~GM~G~I~V~~ 94 (123)
T 3erx_A 82 FGMGMVGLVQVGD 94 (123)
T ss_dssp TTTTCEEEEEESS
T ss_pred CcCCcEEEEEECC
Confidence 9999999999964
No 13
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.72 E-value=2.3e-08 Score=78.87 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred cCCC-CCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccc
Q 027953 33 GGPA-GWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQN 111 (216)
Q Consensus 33 Gg~~-GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~ 111 (216)
|.+. +..|.| +..++++||++.|.+.+..|+|...+ .+....... +....|.+
T Consensus 12 g~~g~~~~F~P-------------~~i~V~~GDtVtf~n~~~~H~v~~~~-----~~~P~g~~~---f~s~pGet----- 65 (127)
T 3tu6_A 12 AADGRVMAFEP-------------AVIRAQPGDTVTFVAKDKGHNSALMK-----GGAPEGAET---WKGKINEE----- 65 (127)
T ss_dssp CTTSCEEEEES-------------SEEEECTTCEEEEECSSSSCCCEECT-----TCSCTTCCC---CBCCTTCC-----
T ss_pred CCCCcccEEeC-------------CEEEECCCCEEEEEECCCCceEEEcc-----CcCCCCccc---eecCCCCE-----
Confidence 5444 477775 46799999999999987566654322 122222110 01122322
Q ss_pred eeEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
+.++++++|.|+|+|. .||..||+..|.|..
T Consensus 66 --~s~TF~~pG~y~y~C~----~H~~~GM~G~I~V~~ 96 (127)
T 3tu6_A 66 --ITVTLSKPGVYMYQCA----PHVGMGMIGAIVVGE 96 (127)
T ss_dssp --CEEECCSCEEEEEECT----TTGGGTCEEEEEESS
T ss_pred --EEEEeCCCeEEEEEeC----CCCcCCcEEEEEECc
Confidence 3588999999999999 399999999999975
No 14
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.71 E-value=1.5e-08 Score=74.93 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=58.4
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcccCC----CCCCCCCCCCCcceec
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNETTFS----SCTTDDASDDDTFHYN 102 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~~Yd----~C~~~~~~~~~~~~~~ 102 (216)
+..+|.+ .++.+.| +..++++||++.|.+.. ..|++...+...++ .|..............
T Consensus 2 ~V~~g~~~~~~~F~P-------------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP-------------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSE 68 (102)
T ss_dssp EEEESCTTCCCCEES-------------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBT
T ss_pred EEEEecCCCccEEeC-------------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecC
Confidence 4566763 4577765 45689999999999765 35665543322221 1111000000001223
Q ss_pred CCCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 103 GGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 103 ~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
.|.+ +.++++++|.|+|+|. + ||++||+..|.|.
T Consensus 69 pG~~-------~~~tf~~~G~y~y~C~-~---H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 69 DEPS-------FKAKVSTPGTYTFYCT-P---HKSANMKGTLTVK 102 (102)
T ss_dssp TBCE-------EEECCCSCEEEEEECS-T---TGGGTCEEEEEEC
T ss_pred CCCE-------EEEEeCCCeEEEEEeC-C---CcccCCeEEEEEC
Confidence 3332 3478899999999999 4 9999999999983
No 15
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.70 E-value=4.3e-08 Score=77.12 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=58.0
Q ss_pred cCCCC--CCcCccCCCCcccccccccCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCcccc
Q 027953 33 GGPAG--WSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQ 110 (216)
Q Consensus 33 Gg~~G--W~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~ 110 (216)
+|++| +.|.| +..++++||++.|.+....|+|... +.+...+.. ......|.
T Consensus 10 ~g~~G~~~~F~P-------------~~i~V~~GDTV~f~n~~~~Hnv~~~-----~~~~p~g~~---~~~~~pg~----- 63 (124)
T 3ef4_A 10 KDDAGNTMVFQP-------------GFVKVEAGDTVKFVPTDKSHNAESV-----REVWPEGVA---PVKGGFSK----- 63 (124)
T ss_dssp ECTTSCEEEEES-------------SEEEECTTCEEEEECSSSSCCCEEC-----TTTSCTTSC---CCBCCTTC-----
T ss_pred cCCCCceeEEeC-------------CEEEECCCCEEEEEECCCCccEEEe-----CCcCCCCcc---ccccCCCC-----
Confidence 44455 88876 4679999999999998766775432 123332211 01112232
Q ss_pred ceeEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 111 NVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 111 ~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
++.++++++|.|.|+|. .||..||+..|+|..
T Consensus 64 --t~s~TF~~~G~y~Y~C~----~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 64 --EVVFNAEKEGLYVLKCA----PHYGMGMVVLVQVGK 95 (124)
T ss_dssp --CEEEECCSSEEEEEECT----TTGGGTCEEEEEESS
T ss_pred --EEEEEeCCCeEEEEEcC----CCCcCCCEEEEEECC
Confidence 34589999999999997 499999999999965
No 16
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.69 E-value=8.7e-08 Score=70.54 Aligned_cols=93 Identities=16% Similarity=0.310 Sum_probs=58.0
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC-CceEEEeCcc---cCCCCCCCCCCCCCcceecC
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNET---TFSSCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~-~h~V~~V~k~---~Yd~C~~~~~~~~~~~~~~~ 103 (216)
+..+|++ .++.+.| +..++++||+|.|+.... .|+|...+.. +.+.+... ..........
T Consensus 2 ~v~m~~~~~~~~F~P-------------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~--~~~~~~~~~~ 66 (99)
T 1plc_A 2 DVLLGADDGSLAFVP-------------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKIS--MSEEDLLNAK 66 (99)
T ss_dssp EEEESCTTCCSCEES-------------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHC--CCTTCCBCST
T ss_pred EEEEecCCCcceEeC-------------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccc--cccCccccCC
Confidence 3456653 4577765 457899999999988764 6775443321 11111100 0000012233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|. ++.++++++|.|+|+|. .||+.||+..|.|.
T Consensus 67 G~-------~~~~tf~~~G~y~~~C~----~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 67 GE-------TFEVALSNKGEYSFYCS----PHQGAGMVGKVTVN 99 (99)
T ss_dssp TC-------EEEEECCSCEEEEEECG----GGTTTTCEEEEEEC
T ss_pred CC-------EEEEEECCCceEEEEcC----CCcccCCEEEEEEC
Confidence 43 33588899999999999 49999999999984
No 17
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.68 E-value=2.1e-08 Score=74.17 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=58.4
Q ss_pred EEEEcC-CCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcc---cCCCCCCCCCCCCCcceecC
Q 027953 29 NHTVGG-PAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNET---TFSSCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg-~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~---~Yd~C~~~~~~~~~~~~~~~ 103 (216)
+..+|+ +.++.+.| +..++++||+|.|.+.. ..|+|...+.. +++.+.... .......
T Consensus 3 ~V~m~~~~~~~~F~P-------------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~----~~~~~~~ 65 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP-------------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY----DDYLNSK 65 (98)
T ss_dssp EEEESCTTSCCSEES-------------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCE----EEEECST
T ss_pred EEEEecCCCCcEEeC-------------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccc----cccccCC
Confidence 445555 45688876 45789999999999876 36776543210 112111000 0012233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.++++++|.|+|+|.. ||++||+..|.|.
T Consensus 66 g~~-------~~~tf~~~G~y~y~C~~----H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 66 GET-------VVRKLSTPGVYGVYCEP----HAGAGMKMTITVQ 98 (98)
T ss_dssp TCE-------EEEECCSCEEEEEECTT----TGGGTCEEEEEEC
T ss_pred CCE-------EEEEcCCCEEEEEEchh----hccCCCEEEEEEC
Confidence 433 35888999999999984 9999999999884
No 18
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.68 E-value=7.9e-08 Score=71.34 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=57.5
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcccCCCCCCCC-CC-----CCCcce
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNETTFSSCTTDD-AS-----DDDTFH 100 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~~Yd~C~~~~-~~-----~~~~~~ 100 (216)
+..+|.+ .+|.+.| ...++++||++.|.+.. ..|+|...+. |.... .. ......
T Consensus 5 ~V~~~~~~~~~~F~P-------------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~-----~~~~~~g~~~~~~~~~~~~ 66 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP-------------AKLTIKPGDTVEFLNNKVPPHNVVFDAA-----LNPAKSADLAKSLSHKQLL 66 (106)
T ss_dssp EEEESCTTCCSSEES-------------SEEEECTTCEEEEEECSSSCCCBEECSS-----SSTTCCHHHHHHHCBCSCC
T ss_pred EEEEEecCCcceEcC-------------CEEEECCCCEEEEEECCCCCceEEEeCC-----CCcccccccchhcccccee
Confidence 4566653 5788875 45689999999999765 3566543221 22110 00 000012
Q ss_pred ecCCCCccccceeEEEEe---ccccceEEEecCCCcccccCCCeEEEEee
Q 027953 101 YNGGGNEFGQNVTIAVPL---TTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 101 ~~~G~~~f~~~~t~~V~L---~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
...|.+ +.+++ +++|.|+|+|. + ||++||+..|.|.
T Consensus 67 ~~pG~~-------~~~~f~~~~~~G~y~y~C~-~---H~~~GM~G~i~V~ 105 (106)
T 2gim_A 67 MSPGQS-------TSTTFPADAPAGEYTFYCE-P---HRGAGMVGKITVA 105 (106)
T ss_dssp CSTTCE-------EEEECCTTCCSEEEEEECT-T---TGGGTCEEEEEEC
T ss_pred eCCCCE-------EEEEEecCCCCceEEEEeC-C---hhhcCcEEEEEEc
Confidence 233432 34788 79999999999 4 9999999999985
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.61 E-value=5.5e-08 Score=71.25 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=56.8
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC-CceEEEeCccc---CCCCCCCCCCCCCcceecC
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNETT---FSSCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~-~h~V~~V~k~~---Yd~C~~~~~~~~~~~~~~~ 103 (216)
+..+|++ .++.+.| +..++++||++.|.+... .|++...+... .+.+.... .....
T Consensus 4 ~V~~~~~~~~~~F~P-------------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~------~~~~~ 64 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP-------------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK------LAIAP 64 (97)
T ss_dssp EEEEEETTTEEEEES-------------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC------CCCSC
T ss_pred EEEEeccCCccEEeC-------------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc------eecCC
Confidence 4455643 5677765 356899999999998653 56654432211 00011111 12233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.++++++|.|+|+|. .||+.||+..|.|.
T Consensus 65 g~~-------~~~tf~~~G~y~y~C~----~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 65 GSF-------YSVTLGTPGTYSFYCT----PHRGAGMVGTITVE 97 (97)
T ss_dssp SCC-------EEEECCSCSEEEEECS----STTTTTCEEEEEEC
T ss_pred CCE-------EEEEeCCCeEEEEEcc----ChhhcCCEEEEEEC
Confidence 433 2478899999999999 49999999999983
No 20
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.59 E-value=5.9e-08 Score=71.07 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=58.0
Q ss_pred EEEEcC-CCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC-CceEEEeCc---ccCCCCCCCCCCCCCcceecC
Q 027953 29 NHTVGG-PAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNE---TTFSSCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg-~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~-~h~V~~V~k---~~Yd~C~~~~~~~~~~~~~~~ 103 (216)
+..+|+ +.++.+.| ...++++||++.|+.... .|++..... .+++.+.... .......
T Consensus 3 ~V~m~~~~~~~~F~P-------------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~----~~~~~~p 65 (98)
T 2plt_A 3 TVKLGADSGALEFVP-------------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISR----DDYLNAP 65 (98)
T ss_dssp EEEESCTTCCSSEES-------------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCE----EEEECST
T ss_pred EEEEecCCCCceEeC-------------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccc----cceecCC
Confidence 456664 34688775 346899999999988764 677553321 1111110000 0012233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.++++++|.|+|+|. .||+.||+..|.|.
T Consensus 66 G~~-------~~~tf~~~G~y~y~C~----~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 66 GET-------YSVKLTAAGEYGYYCE----PHQGAGMVGKIIVQ 98 (98)
T ss_dssp TCE-------EEEECCSCEEEEEECG----GGGGGTCEEEEEEC
T ss_pred CCE-------EEEEeCCCeEEEEEcC----CccccCCeEEEEEC
Confidence 433 3588899999999999 49999999999983
No 21
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.56 E-value=2.8e-07 Score=67.64 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=57.7
Q ss_pred EEEEcC-CCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC-CceEEEeCcc---cCCCCCCCCCCCCCcceecC
Q 027953 29 NHTVGG-PAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNET---TFSSCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg-~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~-~h~V~~V~k~---~Yd~C~~~~~~~~~~~~~~~ 103 (216)
+..+|+ +.++.+.| +..++++||+|.|+.... .|+|...+.. .++.+...-.. .......
T Consensus 2 ~V~~~~~~~~~~F~P-------------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~--~~~~~~~ 66 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP-------------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPE--EDLLNAP 66 (99)
T ss_dssp EEEESCTTSCCSEES-------------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCT--TCCBCST
T ss_pred EEEEecCCCcceEeC-------------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccc--cceeeCC
Confidence 445664 45677765 356899999999988763 5665433211 11211100000 0012233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.++++++|.|+|+|. .||+.||+..|.|.
T Consensus 67 G~~-------~~~~f~~~G~y~~~C~----~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 67 GEE-------YSVTLTEKGTYKFYCA----PHAGAGMVGKVTVN 99 (99)
T ss_dssp TCE-------EEEEECSCEEEEEECG----GGTTTTCEEEEEEC
T ss_pred CCE-------EEEEeCCCcEEEEEcC----CccccCCEEEEEEC
Confidence 432 3588899999999999 49999999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.37 E-value=9e-07 Score=64.79 Aligned_cols=90 Identities=13% Similarity=0.259 Sum_probs=57.0
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcccCC---CCCCCCCCCCCcceecC
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNETTFS---SCTTDDASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~~Yd---~C~~~~~~~~~~~~~~~ 103 (216)
+..+|.+ .++.+.| +..++++||++.|.+.. ..|++...+. ... ...... .......
T Consensus 4 ~V~~~~~~~~~~F~P-------------~~i~v~~G~~V~~~n~~~~~H~~~~~~~-~~pg~~~~~~~~----~~~~~~p 65 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP-------------STVTIKAGEEVKWVNNKLSPHNIVFDAD-GVPADTAAKLSH----KGLLFAA 65 (98)
T ss_dssp EEEESCTTSCSSEES-------------SEEEECTTCEEEEEECSSCCEEEEECCS-SSCHHHHHHHCE----EEEECST
T ss_pred EEEEecCCCccEEeC-------------CEEEECCCCEEEEEECCCCCcEEEEeCC-CCCccccccccc----cccccCC
Confidence 4556654 5677775 34689999999999765 3677543221 100 000000 0012233
Q ss_pred CCCccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.++++++|.|+|+|. .||..||+..|.|.
T Consensus 66 G~~-------~~~tf~~~G~y~~~C~----~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 66 GES-------FTSTFTEPGTYTYYCE----PHRGAGMVGKVVVE 98 (98)
T ss_dssp TCE-------EEEECCSCEEEEEECG----GGTTTTCEEEEEEC
T ss_pred CCE-------EEEEcCCCeEEEEEcC----CccccCCeEEEEEC
Confidence 433 3478899999999999 49999999999984
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.20 E-value=9.6e-07 Score=65.41 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=47.7
Q ss_pred cCCeeeeCCEEEEEEcCC---CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCC
Q 027953 56 ANQTYNLGDYLIFNTNTN---QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAED 132 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~---~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~ 132 (216)
+..++++||++.|.+.+. .|.+. +..... ......|.+. ++.++.+++|.|.|+|.
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~-~~~~~~------------~~~~~pg~~~-----~~~~t~~~~G~Y~y~C~--- 86 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFT-IKKLGI------------DVVVESGKEK-----NITVKPKSAGTYELICR--- 86 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEE-EGGGTE------------EEEECTTCEE-----EEEECCCSCEEEEEECT---
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEE-EecCCc------------ceeecCCcce-----eEEEecccCceEEEECc---
Confidence 457999999999987542 46643 222111 0123344432 45577789999999996
Q ss_pred cccccCCCeEEEEee
Q 027953 133 GLQCQRGVAFEISVN 147 (216)
Q Consensus 133 g~HC~~GmKl~I~V~ 147 (216)
.||..||+..|.|.
T Consensus 87 -~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 87 -YHLLKGMEGKVIVK 100 (100)
T ss_dssp -TTGGGTCEEEEEEC
T ss_pred -cccCCCCEEEEEEC
Confidence 59999999999984
No 24
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.03 E-value=8.4e-06 Score=67.11 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCCCcCccCCCCcccccccccCCee-eeCCEEEEEEcC--C------CceEEEeCcccCC-----------
Q 027953 27 YTNHTVGGPAGWSFDAINNISATNYSSWAANQTY-NLGDYLIFNTNT--N------QTVIQTYNETTFS----------- 86 (216)
Q Consensus 27 a~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F-~VGDtLvF~y~~--~------~h~V~~V~k~~Yd----------- 86 (216)
..++.|+.++++.|.| +..++ +.||.+.|.+.+ . .|+++..+..+++
T Consensus 42 ~~~V~I~~~d~m~F~P-------------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~ 108 (167)
T 3ay2_A 42 NCAATVESNDNMQFNT-------------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAAD 108 (167)
T ss_dssp CCEEEEEECTTSCBSC-------------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGG
T ss_pred ceEEEEEeCCCceEec-------------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccc
Confidence 3467777777888876 34567 779977666643 2 2665444433211
Q ss_pred ----CCCCCCCCCCCcceecCCCCccccceeEEEEec--cccceEEEecCCCcccccCCCeEEEEee
Q 027953 87 ----SCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLT--TTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 87 ----~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~--~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
.=+-.+.+. .......|.+. ++++++. ++|.|+|+|+.+ +|=+ |||..|.|.
T Consensus 109 ~~~v~~~d~~vl~-~t~~l~pGet~-----svtf~~~~lkpG~Y~f~Ct~P--gH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 109 TDYVKPDDARVVA-HTKLIGGGEES-----SLTLDPAKLADGDYKFACTFP--GHGA-LMNGKVTLV 166 (167)
T ss_dssp GTTSCTTCTTEEE-ECCCBCTTCEE-----EEEECGGGGTTSCEEEECCST--TGGG-TSEEEEEEE
T ss_pred cccccccccchhc-cceeeCCCCEE-----EEEEecCCCCCcEEEEEcCCC--Cchh-cCEEEEEEe
Confidence 100000000 00122334332 3334444 799999999998 8888 999999985
No 25
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.99 E-value=1e-05 Score=63.41 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=44.8
Q ss_pred cCCeeeeCCEEEEEEcCC-CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCcc
Q 027953 56 ANQTYNLGDYLIFNTNTN-QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGL 134 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~-~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~ 134 (216)
+..++++||++.|..... .|+|...+... ...... ...+..|. ++.++++++|.|+|+|..
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-----g~~~~~--s~~l~pG~-------t~~~tF~~~G~y~y~C~~---- 121 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFR--GEMMTKDQ-------AYAITFNEAGSYDYFCTP---- 121 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEE--CCCBCTTE-------EEEEEECSCEEEEEECSS----
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCC-----Cccccc--ccccCCCC-------EEEEEcCCCEEEEEEeCC----
Confidence 456899999999986553 56654322110 000000 00122332 335788999999999986
Q ss_pred cccCCCeEEEEee
Q 027953 135 QCQRGVAFEISVN 147 (216)
Q Consensus 135 HC~~GmKl~I~V~ 147 (216)
|. ||+..|.|.
T Consensus 122 H~--gM~G~I~V~ 132 (132)
T 3c75_A 122 HP--FMRGKVIVE 132 (132)
T ss_dssp CT--TCEEEEEEC
T ss_pred Cc--CCEEEEEEC
Confidence 66 999999884
No 26
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.96 E-value=1.6e-05 Score=61.66 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=47.3
Q ss_pred cCCeeeeCCEEEEEEcCCCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCccc
Q 027953 56 ANQTYNLGDYLIFNTNTNQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGLQ 135 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~H 135 (216)
...++++||++.|......|+|.... .|-...... +....|. ++.++++++|.|+|+|.. |
T Consensus 21 ~~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~---~~~~~g~-------t~~~tF~~~G~y~y~C~~----H 81 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEA---FKSKINE-------NYKVTFTAPGVYGVKCTP----H 81 (122)
T ss_dssp SEEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCC---CBCCTTC-------CEEEEECSCEEEEEEETT----E
T ss_pred CEEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcce---eecCCCC-------EEEEEeCCCEEEEEEeCC----C
Confidence 45689999999999876556654322 122222110 0111222 345888999999999985 8
Q ss_pred ccCCCeEEEEeeC
Q 027953 136 CQRGVAFEISVNR 148 (216)
Q Consensus 136 C~~GmKl~I~V~~ 148 (216)
+. |+..|.|..
T Consensus 82 ~~--M~G~I~V~~ 92 (122)
T 2ux6_A 82 PF--MVGVVQVGD 92 (122)
T ss_dssp EE--EEEEEEESS
T ss_pred cc--CEEEEEEeC
Confidence 88 999999964
No 27
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.91 E-value=2.5e-05 Score=57.27 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=55.6
Q ss_pred EEEEcCC-CCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcC-CCceEEEeCcccCCCCCCC-C--CCCCCcceecC
Q 027953 29 NHTVGGP-AGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNT-NQTVIQTYNETTFSSCTTD-D--ASDDDTFHYNG 103 (216)
Q Consensus 29 ~~~VGg~-~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~-~~h~V~~V~k~~Yd~C~~~-~--~~~~~~~~~~~ 103 (216)
+..+|.+ .+..+.| ...+++.||+|.|+... ..|++..-. .. ..+... + ...........
T Consensus 4 ~V~~~~~~~~~~f~p-------------~~i~v~~Gd~V~~~N~~~~~H~v~~~~-~~-~~~~~g~~~~~~~~~~~~i~p 68 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP-------------ANVTVHPGDTVKWVNNKLPPHNILFDD-KQ-VPGASKELADKLSHSQLMFSP 68 (105)
T ss_dssp EEEESCTTCCSCEES-------------SEEEECTTEEEEEEECSSCCEEEEECT-TS-SGGGCHHHHHHHCEEEEECST
T ss_pred EEEEeecCCccEEeC-------------CEEEEcCCCEEEEEECCCCCCeEEEeC-CC-CCcccccccccccccccccCC
Confidence 4566654 5677765 34689999999998654 367754321 11 112100 0 00000012233
Q ss_pred CCCccccceeEEEEe---ccccceEEEecCCCcccccCCCeEEEEee
Q 027953 104 GGNEFGQNVTIAVPL---TTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 104 G~~~f~~~~t~~V~L---~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|.+ +.+++ +++|+|+|.|. . ||..||+..|.|.
T Consensus 69 G~~-------~~~~f~~~~~~G~y~y~C~-~---H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 69 GES-------YEITFSSDFPAGTYTYYCA-P---HRGAGMVGKITVE 104 (105)
T ss_dssp TCE-------EEEEECTTSCSEEEEEECT-T---TGGGTCEEEEEEC
T ss_pred CCe-------EEEEEecCCCCeeEEEEeC-C---chhcCCEEEEEEc
Confidence 433 23666 78999999999 4 9999999999985
No 28
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.88 E-value=8.1e-05 Score=58.47 Aligned_cols=97 Identities=8% Similarity=0.047 Sum_probs=58.5
Q ss_pred EEEEcCCCCCCcCccCCCCcccccccccCCeeeeC-CEEEEEEcC-C-------CceEEEeCccc---------------
Q 027953 29 NHTVGGPAGWSFDAINNISATNYSSWAANQTYNLG-DYLIFNTNT-N-------QTVIQTYNETT--------------- 84 (216)
Q Consensus 29 ~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VG-DtLvF~y~~-~-------~h~V~~V~k~~--------------- 84 (216)
+..|+.++++.|.| +..+++.| |.+.|.+.+ + .|+++..+..+
T Consensus 4 ~v~i~~~d~m~F~p-------------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~ 70 (129)
T 1cuo_A 4 ETTVTSGDTMTYST-------------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADN 70 (129)
T ss_dssp EEEEEECSSSCCSC-------------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGG
T ss_pred EEEEEeCCCceEcc-------------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccc
Confidence 55666667788876 45688999 977777743 2 26655444332
Q ss_pred -CCCCCCCCCCCCCcceecCCCCccccceeEEEEec---cccceEEEecCCCcccccCCCeEEEEee
Q 027953 85 -FSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLT---TTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 85 -Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~---~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
|..=+..+.+. .+.....|.+. +++++++ ++|.|+|+|+.+ +|=+ |||-.|.|.
T Consensus 71 ~~v~~~~~~~~~-~t~~l~pGet~-----svtf~~~~~~~~G~Y~f~C~~p--gH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 71 NFVTPGDKRVIA-FTPIIGGGEKT-----SVKFKVSALSKDEAYTYFCSYP--GHFS-MMRGTLKLE 128 (129)
T ss_dssp TTSCTTCTTCSE-ECCCBCTTCEE-----EEEEEGGGCCTTSCEEEECCST--TCTT-TSEEEEEEE
T ss_pred ccccccccccee-eeeEECCCCEE-----EEEEeccccCCCceEEEEeCCC--CchH-cCEEEEEEe
Confidence 21100000000 01123344432 4456554 899999999998 8888 999999985
No 29
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.74 E-value=3.2e-05 Score=64.47 Aligned_cols=88 Identities=14% Similarity=0.273 Sum_probs=55.3
Q ss_pred eeeeCCEEEEE---EcC------CCceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEec----------
Q 027953 59 TYNLGDYLIFN---TNT------NQTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLT---------- 119 (216)
Q Consensus 59 ~F~VGDtLvF~---y~~------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~---------- 119 (216)
..++||.|-|- |.. .++.+++|++++|+.|+.... .......+..+.. ..+.+.+.
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~-~~~l~~C~~P~~~----~kftikFq~fsP~p~GlE 99 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE-NTPLLNCARPDQD----VKFTIKFQEFSPNLWGLE 99 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTT-CCCSEEECCTTSC----CEEEEECCSSCSSTTCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCC-CcEEEEecCCCCC----EEEEEEEEecCCCCCccc
Confidence 34569999886 321 247889999999999998632 1223344444321 01112211
Q ss_pred -ccc-ceEEEecCC---------CcccccC-CCeEEEEeeCCCC
Q 027953 120 -TTG-TNYFFSDAE---------DGLQCQR-GVAFEISVNRGLG 151 (216)
Q Consensus 120 -~~G-~~YFiC~~~---------~g~HC~~-GmKl~I~V~~~~~ 151 (216)
++| .|||||+-. .||+|.. +|||.|.|.....
T Consensus 100 F~pg~~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 100 FQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp CCTTEEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred ccCCCceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 366 699999863 3589974 9999999966543
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.72 E-value=4.7e-05 Score=56.81 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=52.9
Q ss_pred ceEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEEEcCC-CceEEEeCcccCCCCCCCCCCCCCcceecCCC
Q 027953 27 YTNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFNTNTN-QTVIQTYNETTFSSCTTDDASDDDTFHYNGGG 105 (216)
Q Consensus 27 a~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~y~~~-~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~ 105 (216)
+.+|.|.- .+|.+.| ...++++||+|.|..... .|+|...+.. + +...........|.
T Consensus 18 a~~~~V~~-~~~~F~P-------------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~-----~--g~~~~~~~~~~pG~ 76 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYET-------------PELHVKVGDTVTWINREAMPHNVHFVAGV-----L--GEAALKGPMMKKEQ 76 (105)
T ss_dssp TTCEEEEE-ETTEESS-------------SEEEECTTCEEEEEECSSSCBCCEECTTT-----S--SSSCEECCCBCTTE
T ss_pred CcCEEEEE-eecEEcC-------------CEEEECCCCEEEEEECCCCCEEEEEcCCC-----C--CcccccccccCCCC
Confidence 44565543 4577775 456899999999987654 5665432211 0 00000000122232
Q ss_pred CccccceeEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 106 NEFGQNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 106 ~~f~~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
++.++++++|.|+|+|.. |. ||+..|.|.
T Consensus 77 -------~~~~tf~~~G~y~y~C~~----H~--gM~G~i~V~ 105 (105)
T 2ov0_A 77 -------AYSLTFTEAGTYDYHCTP----HP--FMRGKVVVE 105 (105)
T ss_dssp -------EEEEEECSCEEEEEECSS----CT--TCEEEEEEC
T ss_pred -------EEEEEeCCCEEEEEEeCC----CC--CCEEEEEEC
Confidence 335788999999999997 54 999999883
No 31
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.64 E-value=0.0001 Score=55.25 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=44.7
Q ss_pred cCCeeeeCCEEEEEEcCC-CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCcc
Q 027953 56 ANQTYNLGDYLIFNTNTN-QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGL 134 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~-~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~ 134 (216)
+..++++||+|.|..... .|+|...+... ...... ...+..|. ++.++++++|.|.|+|..
T Consensus 34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-----~~~~~~--s~~l~~g~-------~~~~tf~~~G~y~~~C~~---- 95 (106)
T 1id2_A 34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFR--GEMMTKDQ-------AYAITFNEAGSYDYFCTP---- 95 (106)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEE--CCCBCTTE-------EEEEEECSCEEEEEECSS----
T ss_pred CEEEECCCCEEEEEECCCCcEEEEEeCCCC-----Cccccc--ccccCCCC-------EEEEEeCCCEEEEEEeCC----
Confidence 456899999999986553 56643322110 000000 00122332 335888999999999986
Q ss_pred cccCCCeEEEEee
Q 027953 135 QCQRGVAFEISVN 147 (216)
Q Consensus 135 HC~~GmKl~I~V~ 147 (216)
|+ ||+..|.|.
T Consensus 96 H~--~M~G~I~V~ 106 (106)
T 1id2_A 96 HP--FMRGKVIVE 106 (106)
T ss_dssp CT--TCEEEEEEC
T ss_pred CC--CCEEEEEEC
Confidence 76 999999883
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.54 E-value=0.00028 Score=55.31 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.7
Q ss_pred eEEEEec--cccc-eEEEecCCCcccccCCCeEEEEee
Q 027953 113 TIAVPLT--TTGT-NYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 113 t~~V~L~--~~G~-~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
++.+++. ++|. |.|+|+.+ +|=+ |||-.|.|.
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~P--gH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFP--GHWS-IMKGTIELG 127 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCST--TCTT-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCC--ChhH-CCEEEEEEe
Confidence 4445554 7885 99999998 8988 999999985
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.54 E-value=0.0003 Score=55.22 Aligned_cols=32 Identities=6% Similarity=0.158 Sum_probs=25.4
Q ss_pred eEEEEec--cccc-eEEEecCCCcccccCCCeEEEEee
Q 027953 113 TIAVPLT--TTGT-NYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 113 t~~V~L~--~~G~-~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
+++++.. ++|. |+|+|+.+ +|=+ |||-.|.|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~p--gH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 94 SVTFDVSKIAAGENYAYFCSFP--GHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEEEGGGSCTTCCEEEECCST--TGGG-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCC--ChhH-cCEEEEEEe
Confidence 4445555 6766 99999998 8888 999999985
No 34
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.54 E-value=0.00026 Score=55.57 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=56.0
Q ss_pred EEEEcCCCCCCcCccCCCCcccccccccCCee-eeCCEEEEEEcCC--------CceEEEeCcccCCC-----C------
Q 027953 29 NHTVGGPAGWSFDAINNISATNYSSWAANQTY-NLGDYLIFNTNTN--------QTVIQTYNETTFSS-----C------ 88 (216)
Q Consensus 29 ~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F-~VGDtLvF~y~~~--------~h~V~~V~k~~Yd~-----C------ 88 (216)
+..|+.++++.|.| +..++ +.||++.|.+.+. .|+++..+..+.+. =
T Consensus 4 ~v~v~~~d~m~F~p-------------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~ 70 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT-------------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDK 70 (128)
T ss_dssp EEEEEECTTSCBSC-------------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGG
T ss_pred EEEEEeCCCccEec-------------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccc
Confidence 56677667788886 34577 7899877777432 26654433322110 0
Q ss_pred ---CCCCCCC-CCcceecCCCCccccceeEEEEec--cccc-eEEEecCCCcccccCCCeEEEEee
Q 027953 89 ---TTDDASD-DDTFHYNGGGNEFGQNVTIAVPLT--TTGT-NYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 89 ---~~~~~~~-~~~~~~~~G~~~f~~~~t~~V~L~--~~G~-~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
...++.. ..+.....|.+ .++.++.. ++|. |.|+|+.+ +|=+ |||..|.|.
T Consensus 71 ~~~~~~~~~~~~~t~~l~pGet-----~svtf~~~~l~~G~~Y~f~C~~P--gH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 71 QYLKDGDARVIAHTKVIGAGEK-----DSVTFDVSKLAAGEKYGFFCSFP--GHIS-MMKGTVTLK 128 (128)
T ss_dssp TTSCTTCTTEEEECCCBCTTCE-----EEEEEEGGGSCTTSCEEEECCST--TCGG-GSEEEEEEC
T ss_pred cccccccchhheeeeeeCCCCE-----EEEEEeccccCCCceEEEEECCC--ChhH-CCEEEEEEC
Confidence 0000000 00012234433 24445554 5776 99999998 8988 999999883
No 35
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.07 E-value=0.00071 Score=50.51 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCeeeeCCEEEEEEcCC---CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCc
Q 027953 57 NQTYNLGDYLIFNTNTN---QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDG 133 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~---~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g 133 (216)
..+++.||.+.|++.+. .|.+. +...+. ......|.+. ++.++.+++|.|+|.|..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~-i~~~~~------------~~~i~pG~~~-----~~~f~~~~~G~y~~~C~~--- 97 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFS-IDAFGV------------QEVIKAGETK-----TISFTADKAGAFTIWCQL--- 97 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEE-EGGGTE------------EEEECTTCEE-----EEEEECCSCEEEEEBCSS---
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEE-EcCCCc------------eeEeCCCCEE-----EEEEECCCCEEEEEECCC---
Confidence 46899999999987543 46643 322110 1133445432 444556899999999996
Q ss_pred ccccC-CCeEEEEee
Q 027953 134 LQCQR-GVAFEISVN 147 (216)
Q Consensus 134 ~HC~~-GmKl~I~V~ 147 (216)
||.. +|+..|.|.
T Consensus 98 -~~~~~~M~g~i~V~ 111 (112)
T 1iby_A 98 -HPKNIHLPGTLNVV 111 (112)
T ss_dssp -SCTTTBCCEEEEEE
T ss_pred -CCchHHCEEEEEEe
Confidence 7853 499999885
No 36
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.81 E-value=0.003 Score=50.61 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=52.2
Q ss_pred eeeeCCEEEEEEcC---------CCceEEEeCcccCCCCCCCCCCCCCcceecCCC--Cccc----c--ceeEEEEeccc
Q 027953 59 TYNLGDYLIFNTNT---------NQTVIQTYNETTFSSCTTDDASDDDTFHYNGGG--NEFG----Q--NVTIAVPLTTT 121 (216)
Q Consensus 59 ~F~VGDtLvF~y~~---------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~--~~f~----~--~~t~~V~L~~~ 121 (216)
..++||.|-+-=+. ....++.|++++|+.|+.... ......-+.-. ..|+ + ..+.-.++ ++
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~-~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF-~~ 101 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE-NTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEF-QK 101 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTT-CCCSEEECCTTSCEEEEEESSSCCSCSSCCCC-CT
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCC-CcEEEEecCCCCCEEEEEEEEecCCCCCcccc-cC
Confidence 44679999886332 256788999999999998631 11222223222 1111 0 00000223 56
Q ss_pred c-ceEEEecCC---------Cccccc-CCCeEEEEeeC
Q 027953 122 G-TNYFFSDAE---------DGLQCQ-RGVAFEISVNR 148 (216)
Q Consensus 122 G-~~YFiC~~~---------~g~HC~-~GmKl~I~V~~ 148 (216)
| .||||++-. .||-|. +.|||.|.|..
T Consensus 102 g~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 102 NKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp TEEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred CCceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 6 488888753 457897 58999999953
No 37
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.60 E-value=0.0015 Score=54.33 Aligned_cols=89 Identities=17% Similarity=0.296 Sum_probs=51.9
Q ss_pred CeeeeCCEEEEE---EcC-------CCceEEEeCcccCCCCCCCCCCCCCcceecC-----CCCccc------cceeEEE
Q 027953 58 QTYNLGDYLIFN---TNT-------NQTVIQTYNETTFSSCTTDDASDDDTFHYNG-----GGNEFG------QNVTIAV 116 (216)
Q Consensus 58 ~~F~VGDtLvF~---y~~-------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~-----G~~~f~------~~~t~~V 116 (216)
...++||.|-+- |+. ....+++|++++|++|+..+.. .....-+. |...|+ ...+.-.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~-~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~ 130 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKG-FKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 130 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTE-EEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCC-cEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence 468899999775 432 3567889999999999875421 01111122 222221 0000013
Q ss_pred Eeccccc-eEEEecCC---CcccccCCCeEEEEeeCCCC
Q 027953 117 PLTTTGT-NYFFSDAE---DGLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 117 ~L~~~G~-~YFiC~~~---~g~HC~~GmKl~I~V~~~~~ 151 (216)
++ ++|. ||||++-. .|+-| |||.|.|.....
T Consensus 131 EF-~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 131 EF-RPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CC-CTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred cc-cCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 33 4674 88997643 23456 999999987654
No 38
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.07 E-value=0.009 Score=49.80 Aligned_cols=91 Identities=14% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCeeeeCCEEEEE---EcC--------CCceEEEeCcccCCCCCCCCCCCCCcceecCCC-----Cccc------cceeE
Q 027953 57 NQTYNLGDYLIFN---TNT--------NQTVIQTYNETTFSSCTTDDASDDDTFHYNGGG-----NEFG------QNVTI 114 (216)
Q Consensus 57 ~~~F~VGDtLvF~---y~~--------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~-----~~f~------~~~t~ 114 (216)
....++||.|-+- |+. ....+++|++++|++|+...- ......-+.-. ..|+ ...+.
T Consensus 49 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~-~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~ 127 (182)
T 3czu_B 49 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSK-DQVRWQCNRPSAKHGPEKLSEKFQRFTPFTL 127 (182)
T ss_dssp EEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCG-GGEEEEECCTTCTTSCCEEEEECCSCCSCTT
T ss_pred eEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCC-CcEEEEeCCCCCCCCCcEEEEEEEEcCCCCC
Confidence 3577899999775 332 246788999999999997641 01111112111 1111 00000
Q ss_pred EEEecccc-ceEEEecCC--CcccccCCCeEEEEeeCCCCC
Q 027953 115 AVPLTTTG-TNYFFSDAE--DGLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 115 ~V~L~~~G-~~YFiC~~~--~g~HC~~GmKl~I~V~~~~~~ 152 (216)
-.++ ++| .||||++-. .||.| |||.|.|....+.
T Consensus 128 GlEF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~ 164 (182)
T 3czu_B 128 GKEF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITH 164 (182)
T ss_dssp SCCC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC----
T ss_pred CeeE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCC
Confidence 1334 466 488998742 34666 9999999865543
No 39
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.03 E-value=0.024 Score=44.53 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeeeeCCEEEEEEcCC--CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCcc
Q 027953 57 NQTYNLGDYLIFNTNTN--QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGL 134 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~--~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~ 134 (216)
..++.+||.+.|...+. -|.+. +..... ......|... ++.++++++|.|+|.|..
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~-ip~~~~------------k~d~~PG~~~-----~~~~~~~~~G~y~~~C~e---- 118 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFH-VEGTNI------------NVEVLPGEVS-----TVRYTFKRPGEYRIICNQ---- 118 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEE-ETTSSC------------EEEECBTBCE-----EEEEECCSCEEEEEECCS----
T ss_pred EEEEcCCCEEEEEEEeCCccceEE-ecCCCc------------eeEeCCCCcE-----EEEEEcCCCEEEEEECcc----
Confidence 56899999999998653 35532 221111 0122334322 456889999999999986
Q ss_pred ccc---CCCeEEEEee
Q 027953 135 QCQ---RGVAFEISVN 147 (216)
Q Consensus 135 HC~---~GmKl~I~V~ 147 (216)
+|. .+|+..|.|.
T Consensus 119 ~CG~~H~~M~g~v~V~ 134 (135)
T 2cua_A 119 YCGLGHQNMFGTIVVK 134 (135)
T ss_dssp CCSTTSTTCEEEEEEE
T ss_pred cCCCCcCCCEEEEEEE
Confidence 454 6899999985
No 40
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=95.74 E-value=0.0084 Score=48.07 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=52.0
Q ss_pred CeeeeCCEEEEE---EcC---------CCceEEEeCcccCCCCCCCCCCCCCcceecCC--CCccc------cceeEEEE
Q 027953 58 QTYNLGDYLIFN---TNT---------NQTVIQTYNETTFSSCTTDDASDDDTFHYNGG--GNEFG------QNVTIAVP 117 (216)
Q Consensus 58 ~~F~VGDtLvF~---y~~---------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G--~~~f~------~~~t~~V~ 117 (216)
...++||.|-+- |.. ....+++|++++|++|+..... .....-+.- ...|+ ...+.-.+
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~-~~~~~C~~P~~~~kft~kFq~fsP~p~G~E 100 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAP-NLLLTCDRPDLDLRFTIKFQEYSPNLWGHE 100 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSC-EEEEECCCSSSCEEEEEESSSCCSCCSCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCC-eEEEEeCCCCCCeEEEEEEEEcCCCCCcee
Confidence 367789999775 332 2467889999999999986311 111111111 11111 00000134
Q ss_pred ecccc-ceEEEecCC---------Cccccc-CCCeEEEEee
Q 027953 118 LTTTG-TNYFFSDAE---------DGLQCQ-RGVAFEISVN 147 (216)
Q Consensus 118 L~~~G-~~YFiC~~~---------~g~HC~-~GmKl~I~V~ 147 (216)
+ ++| .||||++-. .||-|. ++|||.|.|.
T Consensus 101 F-~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 101 F-RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp C-CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred e-eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 4 466 488888753 357897 5899999985
No 41
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.65 E-value=0.0082 Score=47.98 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=50.8
Q ss_pred CeeeeCCEEEEE---EcC-------CCceEEEeCcccCCCCCCCCCCCCCcceecC-----CCCccc------cceeEEE
Q 027953 58 QTYNLGDYLIFN---TNT-------NQTVIQTYNETTFSSCTTDDASDDDTFHYNG-----GGNEFG------QNVTIAV 116 (216)
Q Consensus 58 ~~F~VGDtLvF~---y~~-------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~-----G~~~f~------~~~t~~V 116 (216)
...++||.|-+- |.. ....+++|++++|++|+..... .....-+. |...|+ ...+.-.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~-~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~ 101 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKG-FKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 101 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSE-EEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCC-CEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence 467899999775 332 2567889999999999875421 01111122 222221 0000012
Q ss_pred Eeccccc-eEEEecCC---CcccccCCCeEEEEeeCCC
Q 027953 117 PLTTTGT-NYFFSDAE---DGLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 117 ~L~~~G~-~YFiC~~~---~g~HC~~GmKl~I~V~~~~ 150 (216)
++ ++|. ||||++-. .|+-| |||.|.|....
T Consensus 102 EF-~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 102 EF-RPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CC-CTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ee-cCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 33 4674 88997643 23557 99999997643
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.76 E-value=0.22 Score=38.98 Aligned_cols=29 Identities=7% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEEec---cccceEEEecCCCcccccCCCeEEEEee
Q 027953 113 TIAVPLT---TTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 113 t~~V~L~---~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
+++++.. ++|.|-|+|+ + |= |||..|.|.
T Consensus 94 ~vtf~~~~l~~~G~y~f~C~-g---H~--~M~G~v~V~ 125 (125)
T 3fsa_A 94 SVTFDVSKLKEGEQYMFFCA-A---HA--AMKGTLTLK 125 (125)
T ss_dssp EEEEEGGGC---CCEEEECS-S---ST--TCEEEEEEC
T ss_pred EEEEeCcCcCCCccEEEEcC-C---CC--CcEEEEEEC
Confidence 4445554 6799999999 5 76 999999873
No 43
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=94.49 E-value=0.15 Score=41.65 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=45.2
Q ss_pred cCCeeeeCCEEEEEEcCC--CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCc
Q 027953 56 ANQTYNLGDYLIFNTNTN--QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDG 133 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~--~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g 133 (216)
+...+.+|+.+.|...+. -|.. .+.... . ......|... ++.++.+++|.||+.|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf-~IP~lg---------i---k~da~PG~~n-----~~~~~~~kpG~y~g~Cse--- 151 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGF-HVEGTN---------I---NVEVLPGEVS-----TVRYTFKRPGEYRIICNQ--- 151 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEE-EETTSS---------C---EEEECTTBCE-----EEEEECCSCEEEEEECCS---
T ss_pred CEEEEeCCCeEEEEEecCCceEEE-EECCCC---------e---EEEecCCcee-----EEEEEeCCCEEEEEECCc---
Confidence 345888999999988664 3442 222111 0 1122334432 456888999999999996
Q ss_pred ccccC---CCeEEEEee
Q 027953 134 LQCQR---GVAFEISVN 147 (216)
Q Consensus 134 ~HC~~---GmKl~I~V~ 147 (216)
.|.. +|++.|.|.
T Consensus 152 -~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 152 -YCGLGHQNMFGTIVVK 167 (168)
T ss_dssp -CCSTTGGGCEEEEEEE
T ss_pred -CCCCCcCCCEEEEEEe
Confidence 4654 599999985
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=93.79 E-value=0.14 Score=46.38 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred cCCeeeeCCEEEEEEcCC---CceEEEeCc-ccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCC
Q 027953 56 ANQTYNLGDYLIFNTNTN---QTVIQTYNE-TTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAE 131 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~---~h~V~~V~k-~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~ 131 (216)
...+++.||++.|++.+. .|++. +.. .....|. ...|.+ .++.++++++|++||.|...
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~-~~g~~~~~~~~-----------i~pG~~-----~~~~f~~~~~Gt~~y~~~~~ 117 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVV-VDQYAARSAIV-----------NGKNAS-----STFSFVASKVGEFNYYCSIA 117 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCE-ETTTTEECCCB-----------CSTTBE-----EEEEEECCSCEEEEEECCST
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEE-EccCCccccee-----------cCCCCe-----EEEEEEcCCCEEEEEEeCCC
Confidence 457899999999988653 25532 221 1111232 223433 25567778999999999997
Q ss_pred CcccccCCCeEEEEeeCCC
Q 027953 132 DGLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 132 ~g~HC~~GmKl~I~V~~~~ 150 (216)
+|=..||+..|.|....
T Consensus 118 --~h~~~Gm~G~i~V~~~~ 134 (447)
T 2dv6_A 118 --GHRQAGMEGNIQVLPGN 134 (447)
T ss_dssp --THHHHTCEEEEEEESSC
T ss_pred --ChhhCCCEEEEEEeCCc
Confidence 89888999999997644
No 45
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=93.61 E-value=0.043 Score=44.66 Aligned_cols=88 Identities=16% Similarity=0.295 Sum_probs=48.8
Q ss_pred CeeeeCCEEEEE---EcC--------CCceEEEeCcccCCCCCCCCCCCCCcceecCCC-----Cccc------cceeEE
Q 027953 58 QTYNLGDYLIFN---TNT--------NQTVIQTYNETTFSSCTTDDASDDDTFHYNGGG-----NEFG------QNVTIA 115 (216)
Q Consensus 58 ~~F~VGDtLvF~---y~~--------~~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~-----~~f~------~~~t~~ 115 (216)
...++||.|-+- |+. ....+++|++++|++|+..... .....-+.-. ..|+ ...+.-
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~-~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G 110 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRG-FKRWECNRPAAPGGPLKFSEKFQLFTPFSLG 110 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSE-EEEEEECCTTCTTSSCEEEEECCSSCSSTTS
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCC-CEEEEeCCCCCCCCCeEEEEEEEECCCCCCC
Confidence 467899999875 321 2345789999999999976411 0111112211 1111 000001
Q ss_pred EEecccc-ceEEEecCC---CcccccCCCeEEEEeeCCC
Q 027953 116 VPLTTTG-TNYFFSDAE---DGLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 116 V~L~~~G-~~YFiC~~~---~g~HC~~GmKl~I~V~~~~ 150 (216)
+++ ++| .||||++-. .|+-| |||.|.|....
T Consensus 111 ~EF-~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 111 FEF-RPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCC-CTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eee-eCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 334 456 488998742 34567 57778776544
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.13 E-value=0.26 Score=47.92 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=46.7
Q ss_pred cCCeeeeCCEEEEEEcCC------CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEec
Q 027953 56 ANQTYNLGDYLIFNTNTN------QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSD 129 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~------~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~ 129 (216)
...++.+||.+.|...+. -|.+. +.. +. + ......|.+. ++.++.+++|.|||+|+
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~-IPs--lG-------I---K~DaiPGrtn-----svtFtadkPGvY~y~CS 619 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFV-VVN--HG-------V---SMEISPQQTS-----SITFVADKPGLHWYYCS 619 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEE-ETT--TT-------E---EEEECTTCEE-----EEEEECCSCEEEEEECC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeE-ecC--CC-------c---eeeeCCCCeE-----EEEEEcCCCEEEEEECC
Confidence 356899999999987652 35532 211 10 0 1122344432 45688899999999999
Q ss_pred CCCcccccCC---CeEEEEeeC
Q 027953 130 AEDGLQCQRG---VAFEISVNR 148 (216)
Q Consensus 130 ~~~g~HC~~G---mKl~I~V~~ 148 (216)
. +|..+ |+..|.|..
T Consensus 620 E----~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 620 W----FCHALHMEMVGRMMVEP 637 (638)
T ss_dssp S----CCSTTCTTCEEEEEEEC
T ss_pred C----cCCCCcccceEEEEEec
Confidence 7 57654 999999964
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.70 E-value=0.48 Score=45.75 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=45.9
Q ss_pred CCeeeeCCEEEEEEcCC------CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecC
Q 027953 57 NQTYNLGDYLIFNTNTN------QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDA 130 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~------~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~ 130 (216)
..++++||.+.|...+. .|.+. +..... ......|.+. ++.++++++|.|||.|..
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~-ip~~gv------------~~~i~PG~t~-----t~~Fta~~pGtY~yhC~e 575 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFT-MGNYGV------------AMEIGPQMTS-----SVTFVAANPGVYWYYCQW 575 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEE-ETTTTE------------EEEECTTCEE-----EEEEECCSCEEEEEECCS
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEE-ecCCCc------------ceeeCCCCeE-----EEEEECCCCEEEEEECCC
Confidence 45788999999997552 35532 221110 0122345432 566888999999999994
Q ss_pred C-CcccccCCCeEEEEeeC
Q 027953 131 E-DGLQCQRGVAFEISVNR 148 (216)
Q Consensus 131 ~-~g~HC~~GmKl~I~V~~ 148 (216)
. ...| .||+..|.|..
T Consensus 576 ~Cg~~H--~gM~G~IiV~p 592 (595)
T 1fwx_A 576 FCHALH--MEMRGRMLVEP 592 (595)
T ss_dssp CCSTTC--TTCEEEEEEEC
T ss_pred CCCCCc--cCCEEEEEEEc
Confidence 1 0135 49999999975
No 48
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=82.04 E-value=3 Score=36.22 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=48.8
Q ss_pred CeeeeCCEEEEEEcCC-----CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCC
Q 027953 58 QTYNLGDYLIFNTNTN-----QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAED 132 (216)
Q Consensus 58 ~~F~VGDtLvF~y~~~-----~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~ 132 (216)
.+++.||.|.+++.+. -|.+..-...+.+.- . .......|.+ .++.++++++|++||.|...
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~----~~~~i~PG~~-----~~y~f~~~~~Gt~~yH~h~~- 132 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---G----GLTLINPGEK-----VVLRFKATRAGAFVYHCAPG- 132 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---G----GGCCBCTTEE-----EEEEEECCSCEEEEEECCCS-
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---C----ceeEeCCCCE-----EEEEEECCCCEEEEEeecCC-
Confidence 5788999999988653 233221111110000 0 0001233433 36778888999999999885
Q ss_pred c----ccccCCCeEEEEeeCCCCC
Q 027953 133 G----LQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 133 g----~HC~~GmKl~I~V~~~~~~ 152 (216)
+ .|=..||...+.|....+.
T Consensus 133 ~~~~~~~~~~Gl~G~~iV~~~~~~ 156 (333)
T 1mzy_A 133 GPMIPWHVVSGMAGCIMVLPRDGL 156 (333)
T ss_dssp TTHHHHHHHTTCEEEEEEECTTCC
T ss_pred cccchhhhhCCCEEEEEEccCcCc
Confidence 1 2667899999999765443
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=81.62 E-value=3.2 Score=36.02 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=48.7
Q ss_pred CeeeeCCEEEEEEcCC-----CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCC
Q 027953 58 QTYNLGDYLIFNTNTN-----QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAED 132 (216)
Q Consensus 58 ~~F~VGDtLvF~y~~~-----~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~ 132 (216)
.+++.||.+++++.+. .|.+.. -...+. .+ . ........|.+ .++.++++++|++||.|....
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~-h~~~~~----~~-~-~~~~~i~pG~~-----~~y~f~~~~~Gt~~yH~h~~~ 134 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDF-HGATGA----LG-G-AKLTNVNPGEQ-----ATLRFKADRSGTFVYHCAPEG 134 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEE-TTSCSG----GG-G-GGGCCBCTTEE-----EEEEEECCSCEEEEEECCCTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceE-CCCCCC----CC-C-cceEEeCCCCE-----EEEEEECCCCeEEEEecCCCC
Confidence 5778999999888653 243221 111000 00 0 00111233433 367788889999999999740
Q ss_pred --cccccCCCeEEEEeeCCCCC
Q 027953 133 --GLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 133 --g~HC~~GmKl~I~V~~~~~~ 152 (216)
+.|=..||.-.+.|....++
T Consensus 135 ~~~~~~~~Gl~G~liV~~~~~~ 156 (336)
T 1oe1_A 135 MVPWHVVSGMSGTLMVLPRDGL 156 (336)
T ss_dssp CHHHHHHTTCEEEEEEECTTCC
T ss_pred chhHHHhCCCeEEEEEecCcCC
Confidence 02556899999999865443
No 50
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=81.06 E-value=2.8 Score=36.58 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=29.7
Q ss_pred eeEEEEeccccceEEEecCCC-cccccCCCeEEEEeeCCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAED-GLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~-g~HC~~GmKl~I~V~~~~ 150 (216)
.++.++.+++|++||.|.... +.|=..||...|.|....
T Consensus 119 ~~y~f~~~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~ 158 (327)
T 1kbv_A 119 STFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKE 158 (327)
T ss_dssp EEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred EEEEEECCCCeEEEEEeCCCChhhhhhcceEEEEEEecCC
Confidence 366788889999999998630 146678999999998654
No 51
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=76.75 E-value=3.1 Score=37.48 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCeeeeCCEEEEEEcCC-----CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCC
Q 027953 57 NQTYNLGDYLIFNTNTN-----QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAE 131 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~-----~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~ 131 (216)
..+++.||++++++.+. .|++..= +.. ..++.. .+.....|.+ .++.++.+++|++||.|-..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~H---G~~---~~dG~~-~~~~i~pg~~-----~~y~f~~~~~Gt~~yH~H~~ 128 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLH---AVT---GPGGGA-ESSFTAPGHT-----STFNFKALNPGLYIYHCATA 128 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEET---TCC---SGGGGG-GGCCBCTTCE-----EEEEEECCSCEEEEEECCCS
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEec---CCc---CCCCCC-ccEEECCCCE-----EEEEEEcCCCeEEEEecCCC
Confidence 35788999999988543 3332210 000 000000 0001233333 36678888999999999431
Q ss_pred -CcccccCCCeEEEEeeCCCC
Q 027953 132 -DGLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 132 -~g~HC~~GmKl~I~V~~~~~ 151 (216)
...|=..||...+.|....+
T Consensus 129 ~~~~~~~~Gl~G~~iv~~~~~ 149 (442)
T 2zoo_A 129 PVGMHIANGMYGLILVEPKEG 149 (442)
T ss_dssp SHHHHHHTTCEEEEEEECTTC
T ss_pred ChHHHHhCccEEEEEEeCCCC
Confidence 01577789999999986543
No 52
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=74.74 E-value=7.4 Score=33.19 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=30.0
Q ss_pred eeEEEEeccccceEEEecCCC-cccccCCCeEEEEeeCCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAED-GLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~-g~HC~~GmKl~I~V~~~~ 150 (216)
.++.++.+++|++||-|-... ..|=..||.-.|.|....
T Consensus 117 ~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~ 156 (288)
T 3gdc_A 117 FTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKE 156 (288)
T ss_dssp EEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECSS
T ss_pred EEEEEEcCCCccEEEEecCcchHHHHhCcCeEEEEEeCCc
Confidence 367788889999999999841 025668999999997644
No 53
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=71.93 E-value=1.3 Score=34.84 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=26.4
Q ss_pred CeeeeCCEEEEE---EcC--------CCceEEEeCcccCCCCCCCC
Q 027953 58 QTYNLGDYLIFN---TNT--------NQTVIQTYNETTFSSCTTDD 92 (216)
Q Consensus 58 ~~F~VGDtLvF~---y~~--------~~h~V~~V~k~~Yd~C~~~~ 92 (216)
...++||.|-+- |+. ....++.|++++|++|+...
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 67 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS 67 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence 467899999774 322 24667899999999999764
No 54
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=71.44 E-value=6.4 Score=34.07 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.6
Q ss_pred eeEEEEeccccceEEEecCCCcccc-cCCCeEEEEeeCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQC-QRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC-~~GmKl~I~V~~~ 149 (216)
..+.|+.+++|.|+|.|... .|+ ..||...+.|...
T Consensus 283 ~dvlv~~~~pG~y~~~~h~~--~~~~~~G~~~~~~V~~~ 319 (336)
T 1oe1_A 283 GAALYTFKQPGVYAYLNHNL--IEAFELGAAGHIKVEGK 319 (336)
T ss_dssp EEEEEECCSCEEEEEEESSH--HHHHTTSCEEEEEEESC
T ss_pred EEEEEEcCCCceEEEEechh--hccccCCCeEEEEECCC
Confidence 35668888999999999987 799 8999999999753
No 55
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=64.63 E-value=5.3 Score=34.61 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=30.1
Q ss_pred eEEEEeccccceEEEecCCCcccc-cCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQC-QRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC-~~GmKl~I~V~~ 148 (216)
.+.|+.+++|.++|.|-.. .|+ +.||.-.+.|..
T Consensus 284 ~v~v~a~~pG~y~~~ch~~--~h~~~~Gm~~~~~v~~ 318 (333)
T 1mzy_A 284 AALYKFLQPGVYAYVNHNL--IEAVHKGATAHVLVEG 318 (333)
T ss_dssp EEEEECCSCEEEEEEESSH--HHHHTTCCEEEEEEES
T ss_pred EEEEEcCCCEEEEEecChh--hhHhhCCCEEEEEEcC
Confidence 5568888999999999997 899 999999999975
No 56
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=64.29 E-value=6.3 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=25.5
Q ss_pred eEEEEeccccceEEEecCCCcccccCC---CeEEEEee
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRG---VAFEISVN 147 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~G---mKl~I~V~ 147 (216)
.+.+..+++|.||..|+. -|..| |++.|.|.
T Consensus 82 ~l~~~~~~pG~y~g~CsE----~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 82 RLHLIANEPGTYDGICAE----ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EEEECCSSSEEEEEEECS----CCSTTSTTCCEEEEEE
T ss_pred EEEEEeCCCeEEEEEccc----ccccchhhceEEEEEE
Confidence 345778999999999996 68765 99999887
No 57
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=62.08 E-value=4.8 Score=34.43 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=29.6
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
.+.++.+.+|.+.|.|-.. .|=++||...+.|.+
T Consensus 255 ~v~~~~~~pG~~~~hCH~~--~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 255 ILELRFPYPGKFMFHAHKT--EFAELGWMGFFEVSA 288 (288)
T ss_dssp EEEECCCSCEEEEEECSSH--HHHTTTCEEEEEEEC
T ss_pred EEEEECCCCEEEEEEecCh--HHHhcCCCEEEEEeC
Confidence 5567778999999999998 899999999999863
No 58
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=59.42 E-value=16 Score=31.41 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.6
Q ss_pred ccccceEEEecCCCcccccCCCeEEEEeeCCCCC
Q 027953 119 TTTGTNYFFSDAEDGLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 119 ~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~~ 152 (216)
+.+|.+.|-|-+. .|=++||...+.|....+.
T Consensus 260 dnPG~w~~HCHi~--~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQ--NHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSH--HHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCH--HHHhcCCeEEEEEECCCCC
Confidence 3579999999998 8999999999999876654
No 59
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=59.30 E-value=8 Score=34.10 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=26.1
Q ss_pred eEEEEeccccceEEEecCCCcccccCC---CeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRG---VAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~G---mKl~I~V~~ 148 (216)
.+.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 230 ~~~~~~~~~G~y~g~CsE----~CG~~Hs~M~~~v~vvs 264 (298)
T 3hb3_B 230 QLWFSVDQEGVYFGQCSE----LCGINHAYMPIVVKAVS 264 (298)
T ss_dssp EEEEECSSSEEEEECCCS----CCSTTTTSCCEEEEEEC
T ss_pred EEEEEeCCCEEEEEEccc----ccCcCccCCeeEEEEEc
Confidence 345888999999999996 68754 999999874
No 60
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=59.23 E-value=36 Score=29.39 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=27.9
Q ss_pred eeEEEEeccccceEEEecCCCcccc--cCCCeEEEEeeCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQC--QRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC--~~GmKl~I~V~~~ 149 (216)
.++.++.+++|++||.|... .... ..||...|.|...
T Consensus 88 ~~y~f~~~~~Gt~wYH~H~~-~~~~~~~~Gl~G~lIV~~~ 126 (318)
T 3g5w_A 88 FTYKFKAEPAGTMWYHCHVN-VNEHVTMRGMWGPLIVEPK 126 (318)
T ss_dssp EEEEEECCSCEEEEEECCSS-HHHHHHHSCCEEEEEEECS
T ss_pred EEEEEEcCCCEEEEEEccCC-hhhhhccCCCEEEEEEcCC
Confidence 46778889999999999985 1122 2799988888754
No 61
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=58.17 E-value=1.7 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=20.5
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
.+.++.+++|.++|.|-.. .|-..||...+.|..
T Consensus 267 ~v~~~~~~pG~~~~hch~~--~H~~~GM~~~~~V~~ 300 (306)
T 1sdd_A 267 TANMTVSPEGRWTIASLIP--RHFQAGMQAYIDIKN 300 (306)
T ss_dssp C--------CCCCCBCCST--TTGGGTCBCCC----
T ss_pred EEEEEcCCCeEEEEEeCCh--HHHhcCCeEEEEEec
Confidence 4567778899999999998 899999999888864
No 62
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=58.08 E-value=8.8 Score=33.05 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=26.1
Q ss_pred eEEEEeccccceEEEecCCCcccccCC---CeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRG---VAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~G---mKl~I~V~~ 148 (216)
.+.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 212 ~~~~~~~~~G~y~g~Cse----~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 212 QLWFRAEREGIFFGQCSE----LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEEEECCSCEEEEECCCS----CCSTTGGGCCEEEEEEC
T ss_pred EEEEecCCcEEEEEEChH----hcccCcccCeEEEEEEc
Confidence 345888999999999996 68765 999888864
No 63
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=56.50 E-value=12 Score=31.56 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=30.7
Q ss_pred eEEEEec---cccceEEEecCCCcccccCCCeEEEEeeCCCC
Q 027953 113 TIAVPLT---TTGTNYFFSDAEDGLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 113 t~~V~L~---~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~ 151 (216)
++.+..+ .+|.++|-|-.. .|=..||...+.|.....
T Consensus 229 ~~~~~~~~~~npG~w~~HCH~~--~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 229 GFQIIAGEGVGAGAWMYHCHVQ--SHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EEEEETTTTTCSEEEEEEECSH--HHHHTTCEEEEEEECTTS
T ss_pred EEEEEeccCCCCCeEEEECCCc--hHhhCCCeEEEEEeCCCC
Confidence 4556665 589999999998 899999999999987544
No 64
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=56.21 E-value=3.5 Score=32.45 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=20.4
Q ss_pred ccccCCeeeeCCEEEEEEcCCCceEEEe
Q 027953 53 SWAANQTYNLGDYLIFNTNTNQTVIQTY 80 (216)
Q Consensus 53 ~WAs~~~F~VGDtLvF~y~~~~h~V~~V 80 (216)
+.+..+.+++||.++|++......+..|
T Consensus 110 ~Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 110 EFTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 3456689999999999998754334444
No 65
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=56.12 E-value=47 Score=31.05 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=30.8
Q ss_pred eeEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
.++.++++++|++||-|-.. .|=..||.-.+.|..
T Consensus 123 ~~Y~f~~~q~GT~wYH~H~~--~q~~~Gl~G~liV~~ 157 (559)
T 2q9o_A 123 RTYRWRARQYGTSWYHSHFS--AQYGNGVVGTIQING 157 (559)
T ss_dssp EEEEEECCSCEEEEEEECST--TGGGGTCEEEEEEEC
T ss_pred EEEEEECCCCEEEEEEEccc--chhcCCceEEEEecC
Confidence 36778889999999999997 788899999999975
No 66
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=55.78 E-value=52 Score=30.60 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=31.1
Q ss_pred eeEEEEec-cccceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 112 VTIAVPLT-TTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L~-~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
.++.++++ +.|++||-|-.. .|=..||...+.|...
T Consensus 89 ~~Y~f~~~~~~GT~wYH~H~~--~q~~~Gl~G~liV~~~ 125 (534)
T 1zpu_A 89 MLYNFTVDYNVGTYWYHSHTD--GQYEDGMKGLFIIKDD 125 (534)
T ss_dssp EEEEEECSSCCEEEEEECCSS--SGGGGTCEEEEEEECT
T ss_pred EEEEEEeCccceeEEEEEcCc--ccccCcceeeEEeCCC
Confidence 36778888 899999999997 7888999999999764
No 67
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=55.52 E-value=8.6 Score=32.43 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=25.7
Q ss_pred eEEEEeccccceEEEecCCCcccccCC---CeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRG---VAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~G---mKl~I~V~~ 148 (216)
.+.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 181 ~~~~~~~~~G~y~g~Cse----~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 181 QTTLMSSRPGLYYGQCSE----ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EEEECCSSCEEEEECCCS----CCSTTGGGCCEEEEEEC
T ss_pred EEEEecCCcEEEEEEehh----hcccccccCeEEEEEEc
Confidence 345778999999999996 68766 998888764
No 68
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=55.10 E-value=10 Score=33.29 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.0
Q ss_pred eEEEEe---ccccceEEEecCCCcccccCCCeEEEEeeCCCCC
Q 027953 113 TIAVPL---TTTGTNYFFSDAEDGLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 113 t~~V~L---~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~~ 152 (216)
++.++. +.+|.++|.|-.. .|=..||...+.|....+.
T Consensus 270 ~v~~~~~~~~~pG~w~~HCHi~--~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 270 GFQIIAGEGVGAGAWMYHCHVQ--SHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp EEEEETTTTTCSEEEEEEECSH--HHHHTTCEEEEEEECTTSC
T ss_pred EEEEEECCCCCCeeEEEeCCCH--HHHhccCcEEEEEecCCCC
Confidence 455664 5789999999998 8999999999999875543
No 69
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=54.90 E-value=1.1e+02 Score=26.98 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=44.0
Q ss_pred CCeeeeCCEEEEEEcCC--CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCCCcc
Q 027953 57 NQTYNLGDYLIFNTNTN--QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAEDGL 134 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~~--~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~~g~ 134 (216)
...+.+|..+.|+-.+. -|.. .|-+-.. ...--.|... .+.++.+++|.||..|+.
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf-~IP~lg~------------k~DaiPGr~n-----~~~~~~~~~G~y~g~CsE---- 209 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSF-FIPRLGS------------QIYAMAGMQT-----RLHLIANEPGTYDGISAS---- 209 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEE-EEGGGTE------------EEEECBTSCE-----EEEEECCSCBCCEEBCCS----
T ss_pred eEEEeCCCEEEEEEEeCCcccee-eecccCc------------EEeecCCcce-----eeEEecCCCeEEEEeccc----
Confidence 45788999999988764 3442 2321110 0011224332 345788999999999996
Q ss_pred cccCC---CeEEEEee
Q 027953 135 QCQRG---VAFEISVN 147 (216)
Q Consensus 135 HC~~G---mKl~I~V~ 147 (216)
-|..| |++.|.|.
T Consensus 210 ~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 210 YSGPGFSGMKFKAIAT 225 (315)
T ss_dssp CCSTTTTTCCEECCBC
T ss_pred cchhhHHhccceEEEe
Confidence 68764 99998887
No 70
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=54.19 E-value=66 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred eeEEEEe-ccccceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 112 VTIAVPL-TTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L-~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
.++.+++ ++.|++||-|-.. .|=..||...|.|...
T Consensus 93 ~tY~f~~~~~~GT~wYHsH~~--~q~~~GL~G~lIV~~~ 129 (499)
T 3pxl_A 93 FLYDFQVPDQAGTFWYHSHLS--TQYCDGLRGPFVVYDP 129 (499)
T ss_dssp EEEEEECSSCCEEEEEEECST--TGGGGTCEEEEEEECT
T ss_pred EEEEEEcCCCCceeeeeccch--hHHhccceeEEEEcCC
Confidence 3677888 6799999999997 7878899999999753
No 71
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=53.19 E-value=71 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred eeEEEEe-ccccceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 112 VTIAVPL-TTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L-~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
.++.+++ ++.|++||-|-.. .|=..||...+.|...
T Consensus 94 ftY~f~~~~~~GT~wYHsH~~--~q~~~GL~G~lIV~~~ 130 (495)
T 3t6v_A 94 FSYNFNVPGMAGTYWYHSHLT--TQYCDGLRGPFVVYDP 130 (495)
T ss_dssp EEEEEECTTCCEEEEEEECST--TGGGGTCEEEEEEECT
T ss_pred EEEEEEeCCCCceeeeeccch--hHHhcCceEEEEEcCc
Confidence 3677888 6799999999997 7878999999999753
No 72
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=48.20 E-value=18 Score=31.40 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=29.3
Q ss_pred eEEEEeccccceEEEecCCCcccc-cCCCeEEEEeeCC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQC-QRGVAFEISVNRG 149 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC-~~GmKl~I~V~~~ 149 (216)
.+.|+.+++|.++|.|... .|| ..||...+.+...
T Consensus 273 dv~v~~~~pG~y~l~~h~~--~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 273 IVEFKVDIPGNYTLVDHSI--FRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEEEECSCEEEEEEESST--HHHHHSSCEEEEEEESC
T ss_pred EEEEEeCCCeEEEEEeccc--cccccCCcEEEEEECCC
Confidence 4567888899999999998 898 7899888888653
No 73
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=47.69 E-value=1.2e+02 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=26.7
Q ss_pred cccceEEEecCCCcccccCCCeEEEEeeCCCCC
Q 027953 120 TTGTNYFFSDAEDGLQCQRGVAFEISVNRGLGL 152 (216)
Q Consensus 120 ~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~~~ 152 (216)
.+|.+.|-|-+. .|=.+||.-.+.|....+.
T Consensus 245 nPG~w~~HCHi~--~H~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 245 GAGAWMYHCHVQ--SHSDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp CSEEEEEEECSH--HHHHTTCEEEEEEECTTCC
T ss_pred CCEeEEEEeCCh--HHHHCCCeEEEEEECCCCC
Confidence 479999999998 8999999999999875543
No 74
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=45.50 E-value=8.3 Score=28.04 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.2
Q ss_pred ccCCeeeeCCEEEEEEcCC
Q 027953 55 AANQTYNLGDYLIFNTNTN 73 (216)
Q Consensus 55 As~~~F~VGDtLvF~y~~~ 73 (216)
+..+..+.||.|+|+|..+
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 5667899999999999764
No 75
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=44.76 E-value=9.7 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=12.0
Q ss_pred CeeeeCCEEEEE-EcC
Q 027953 58 QTYNLGDYLIFN-TNT 72 (216)
Q Consensus 58 ~~F~VGDtLvF~-y~~ 72 (216)
+.|++||.|+|+ |..
T Consensus 36 r~~~vGD~l~l~E~~~ 51 (83)
T 3iuw_A 36 RNFQVGDILILEEYMN 51 (83)
T ss_dssp SCCCTTCEEEEEEEET
T ss_pred cCCCCCCEEEEEEccC
Confidence 469999999995 643
No 76
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=42.03 E-value=9.6 Score=28.82 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=15.8
Q ss_pred CeeeeCCEEEEEEcCCCceEEEe-CcccCC
Q 027953 58 QTYNLGDYLIFNTNTNQTVIQTY-NETTFS 86 (216)
Q Consensus 58 ~~F~VGDtLvF~y~~~~h~V~~V-~k~~Yd 86 (216)
+.+++||.|+| ++.....+| .-..|+
T Consensus 32 ~~ikvGD~I~f---~~~~l~~~V~~v~~Y~ 58 (109)
T 2z0t_A 32 RQIKPGDIIIF---EGGKLKVKVKGIRVYS 58 (109)
T ss_dssp GGCCTTCEEEE---GGGTEEEEEEEEEEES
T ss_pred hcCCCCCEEEE---CCCEEEEEEEEEEccC
Confidence 36899999999 233333444 334454
No 77
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=38.14 E-value=32 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.7
Q ss_pred eEEEEeccccceEEEecCCCcccc-cCCCeEEEEeeCCC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQC-QRGVAFEISVNRGL 150 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC-~~GmKl~I~V~~~~ 150 (216)
.+.|+.+++|.|+|.|... .|+ ..||...+.|....
T Consensus 263 ~v~v~~~~~G~y~~~~~~~--~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 263 IVEFKVEVPGTFILVDHSI--FRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEEEECCSCEEEEEEESST--HHHHTTSCEEEEEEESCC
T ss_pred EEEEEcCCCCeEEEEeccc--ccccccCceEEEEecCCC
Confidence 4568888999999999987 787 78998888887644
No 78
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=37.65 E-value=26 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=30.2
Q ss_pred eeEEEEeccccceEEEecCCC--cccccCCCeEEEEeeCCCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAED--GLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~--g~HC~~GmKl~I~V~~~~~ 151 (216)
.++.++++++|++||.|.... ..|=..||.-.+.|....+
T Consensus 120 ~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~ 161 (340)
T 2bw4_A 120 TTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDG 161 (340)
T ss_dssp EEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBC
T ss_pred EEEEEECCCCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcC
Confidence 367788889999999999750 0256689999999976443
No 79
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=36.41 E-value=50 Score=32.43 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=29.0
Q ss_pred eEEEEec----------cccceEEEecCCCcccccCCCeEEEEeeCCC
Q 027953 113 TIAVPLT----------TTGTNYFFSDAEDGLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 113 t~~V~L~----------~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~ 150 (216)
++.+++. ..|++||.|......|...||...|.|....
T Consensus 252 tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 252 TYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp EEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHTSCCEEEEEECST
T ss_pred EEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhCCceeeEEECCCc
Confidence 5566666 6799999999862237889999999887654
No 80
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=34.43 E-value=59 Score=27.90 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=28.0
Q ss_pred eeEEEEeccccceEEEecCCCcc-cccCCCeEEEEeeC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGL-QCQRGVAFEISVNR 148 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~-HC~~GmKl~I~V~~ 148 (216)
..+.|+.+++|.++|.|... . |=..||.-.|.|..
T Consensus 289 ~~v~v~~~~pG~y~~~~h~~--~~h~~~Gm~~~~~V~~ 324 (340)
T 2bw4_A 289 GAAFYTFRQPGVYAYVNHNL--IEAFELGAAGHFKVTG 324 (340)
T ss_dssp EEEEEECCSCEEEEEEESSH--HHHHTTSCEEEEEEES
T ss_pred EEEEEECCCCeeeEEEcCch--HHHHhCCCEEEEEECC
Confidence 35668888999999999985 4 44789998899875
No 81
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=33.25 E-value=25 Score=33.39 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=29.9
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
.+.++.+.+|.+.|.|-.. .|-..||...+.|..
T Consensus 294 ~v~~~~~~pG~w~~hch~~--~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 294 TLEMKASKPGWWLLDTEVG--EIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEEEECCSSEEEEEECCCH--HHHTTTCEEEEEEEC
T ss_pred EEEEEeccceEeecccCcc--cccccccccceeeec
Confidence 5567788899999999998 899999999999964
No 82
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=32.17 E-value=35 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=17.7
Q ss_pred cCCeeeeCCEEEEEEcCCCceEEEe
Q 027953 56 ANQTYNLGDYLIFNTNTNQTVIQTY 80 (216)
Q Consensus 56 s~~~F~VGDtLvF~y~~~~h~V~~V 80 (216)
...+|.+||.|+|--+.+.+.-++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEEC
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEe
Confidence 4679999999999766654433444
No 83
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=31.95 E-value=1e+02 Score=28.19 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=50.4
Q ss_pred eeeeCCEEEEEEcCC----C-------ceEEEeCcccCCCCCCCCCCCCCccee-cCCCCccccceeEEEEeccccceEE
Q 027953 59 TYNLGDYLIFNTNTN----Q-------TVIQTYNETTFSSCTTDDASDDDTFHY-NGGGNEFGQNVTIAVPLTTTGTNYF 126 (216)
Q Consensus 59 ~F~VGDtLvF~y~~~----~-------h~V~~V~k~~Yd~C~~~~~~~~~~~~~-~~G~~~f~~~~t~~V~L~~~G~~YF 126 (216)
++..|+++++.+..+ . |..+.+.+.....=+..++...++... ..|.. ..+++..+.+|.+.|
T Consensus 376 ~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~-----v~irf~adnPG~W~~ 450 (503)
T 1hfu_A 376 ELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDE-----VTIRFVTDNPGPWFF 450 (503)
T ss_dssp EECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCE-----EEEEEECCSCEEEEE
T ss_pred EccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCce-----EEEEEEcCCCeeeeE
Confidence 567789888866521 1 333334433222112223333344333 22322 245677789999999
Q ss_pred EecCCCcccccCCCeEEEEeeC
Q 027953 127 FSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 127 iC~~~~g~HC~~GmKl~I~V~~ 148 (216)
-|-.. .|=..||-+.+.|..
T Consensus 451 HCHil--~H~~~GM~~~~~v~~ 470 (503)
T 1hfu_A 451 HCHIE--FHLMNGLAIVFAEDM 470 (503)
T ss_dssp EESSH--HHHHTTCEEEEEECH
T ss_pred ecCch--hHhhCCCeEEEEECc
Confidence 99998 899999999998854
No 84
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=30.99 E-value=22 Score=27.67 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=11.6
Q ss_pred CeeeeCCEEEEEEcCC
Q 027953 58 QTYNLGDYLIFNTNTN 73 (216)
Q Consensus 58 ~~F~VGDtLvF~y~~~ 73 (216)
.++..||+++|+|..+
T Consensus 100 vtl~rG~t~~F~y~~g 115 (126)
T 4dny_A 100 VTLSVGNTLLFKYVNG 115 (126)
T ss_dssp EEECTTCEEEEEEETT
T ss_pred EEecCCCEEEEEEcCC
Confidence 4677788888888554
No 85
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=30.63 E-value=1e+02 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=27.6
Q ss_pred eeEEEEeccc----------cceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 112 VTIAVPLTTT----------GTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L~~~----------G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
.++.+++++. |++||-|-.....|-..||.-.+.|...
T Consensus 120 ~~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~ 167 (306)
T 1sdd_A 120 YTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKK 167 (306)
T ss_dssp EEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECT
T ss_pred EEEEEEeCCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccC
Confidence 3667887654 7999999865112667899988888754
No 86
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=30.41 E-value=36 Score=31.45 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=29.0
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
++.+..+.+|.+-|-|-+. .|=..||...+.|.
T Consensus 448 ~i~~~~d~pG~w~~HCHil--~H~d~GMm~~~~V~ 480 (481)
T 3zx1_A 448 RLRMKQDFKGLRMYHCHIL--EHEDLGMMGNLEVK 480 (481)
T ss_dssp EEEECCCSCEEEEEEESSH--HHHHTTCEEEEEEE
T ss_pred EEEEEcCCCeeEEEEcCCh--HHHhcCCceEEEEe
Confidence 5667778999999999998 89999999998885
No 87
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=27.87 E-value=71 Score=27.46 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=27.4
Q ss_pred eEEEEeccccceEEEecCCCccccc------CCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQ------RGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~------~GmKl~I~V~~ 148 (216)
.+.++.+.+|.+.|-|-.. .|-. .||...|.+..
T Consensus 237 ~v~~~a~~pG~w~~hCH~~--~H~~~g~~~~~Gm~~~i~~~g 276 (318)
T 3g5w_A 237 DVILNMDNPGLWMIHDHVD--THTTNGDKPDGGIMTTIEYEE 276 (318)
T ss_dssp EEEEECCSCSEEEEEESSG--GGSCBTTBSSCBSEEEEEETT
T ss_pred EEEEECCCCeeEEEEeccH--HHhhccCcCCCCCEEEEEECC
Confidence 5678888999999999998 8887 46777777754
No 88
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=27.75 E-value=26 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.1
Q ss_pred cccCCeeeeCCEEEEEEcC
Q 027953 54 WAANQTYNLGDYLIFNTNT 72 (216)
Q Consensus 54 WAs~~~F~VGDtLvF~y~~ 72 (216)
-+.-..+++||.+.|.|..
T Consensus 48 ~~~l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 48 QTKMSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp TCEECCCCTTCEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEE
Confidence 3344679999999999975
No 89
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=27.60 E-value=22 Score=28.24 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=10.1
Q ss_pred ccceEEEEcCCCCCC
Q 027953 25 TAYTNHTVGGPAGWS 39 (216)
Q Consensus 25 ~~a~~~~VGg~~GW~ 39 (216)
....+.+||-...|.
T Consensus 26 ~~~~~l~v~~~~~~~ 40 (259)
T 4dz1_A 26 VEGRTLNVAVSPASP 40 (259)
T ss_dssp CTTCEEEEEECCCBT
T ss_pred ccCCeEEEEECCCCC
Confidence 445688888766564
No 90
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=27.42 E-value=26 Score=25.12 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.6
Q ss_pred cccccCCeeeeCCEEEEEEcC
Q 027953 52 SSWAANQTYNLGDYLIFNTNT 72 (216)
Q Consensus 52 ~~WAs~~~F~VGDtLvF~y~~ 72 (216)
.+.+.-..+++||.+.|.|..
T Consensus 54 ~~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 54 TPQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp CTTCEECCCCTTCEEEEEEEE
T ss_pred CChhhhhcCCCCCEEEEEEEE
Confidence 345555689999999999975
No 91
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=27.37 E-value=35 Score=25.42 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=28.4
Q ss_pred EEEcCCCCCCcCccCCCCcccccccc-cCCeeeeCCEEEEEEcCCC
Q 027953 30 HTVGGPAGWSFDAINNISATNYSSWA-ANQTYNLGDYLIFNTNTNQ 74 (216)
Q Consensus 30 ~~VGg~~GW~~~p~~n~~~~~Y~~WA-s~~~F~VGDtLvF~y~~~~ 74 (216)
|-.++ ..|+..+.-.-....|..|. ...+...|+.|.|+|..+.
T Consensus 22 yg~~~-g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~dG~ 66 (104)
T 2laa_A 22 YRPAG-GSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFNDGN 66 (104)
T ss_dssp EEETT-SCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEECSS
T ss_pred EcCCC-CCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEeCCC
Confidence 33344 47997652222234588895 6667777899999996554
No 92
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=26.72 E-value=95 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred eeEEEEeccccceEEEecCCCcccccCCCeEEEEeeCCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRGL 150 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~~ 150 (216)
.++.++++++|++||-|-.. .|=..||...|.|....
T Consensus 89 ~tY~f~~~~~GT~wYHsH~~--~q~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 89 FFYNFTVDNPGTFFYHGHLG--MQRSAGLYGSLIVDPPQ 125 (552)
T ss_dssp EEEEEECCSCEEEEEEECST--TTGGGTCEEEEEEECCT
T ss_pred EEEEEECCCCEEEEEEECch--hHHhccCeeeEEEeCCc
Confidence 36778888999999999987 78889999999998753
No 93
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=25.79 E-value=1.6e+02 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=28.0
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEee
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVN 147 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~ 147 (216)
.+++..+.+|...|-|-.. .|=..||.+.+...
T Consensus 438 ~irf~adnPG~W~~HCHi~--~H~~~Gm~~~~~e~ 470 (495)
T 3t6v_A 438 TIRFCTDNPGPWFLHCHID--WHLDAGFAIVFAED 470 (495)
T ss_dssp EEEEECCSCEEEEEEESCH--HHHHTTCEEEEEET
T ss_pred EEEEEcCCCeeEEEEecch--hHhhcCCeEEEEEC
Confidence 5667778999999999998 89999998887653
No 94
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=25.77 E-value=1.8e+02 Score=26.73 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=51.1
Q ss_pred eeeeCCEEEEEEcCC-C-------ceEEEeCcccCCCCCCCCCCCCCccee-cCCCCccccceeEEEEeccccceEEEec
Q 027953 59 TYNLGDYLIFNTNTN-Q-------TVIQTYNETTFSSCTTDDASDDDTFHY-NGGGNEFGQNVTIAVPLTTTGTNYFFSD 129 (216)
Q Consensus 59 ~F~VGDtLvF~y~~~-~-------h~V~~V~k~~Yd~C~~~~~~~~~~~~~-~~G~~~f~~~~t~~V~L~~~G~~YFiC~ 129 (216)
.+..|+++++.+.+. . |..+.+.+.....=+..++...++... ..|.. ..+++..+.+|.+.|-|-
T Consensus 400 ~v~~g~~vei~l~N~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~-----v~Irf~aDNPG~W~~HCH 474 (521)
T 1v10_A 400 SLPANQVIEISIPGGGNHPFHLHGHNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDN-----VTFRFVTDNPGPWFLHCH 474 (521)
T ss_dssp EECTTCEEEEEEECCBSCEEEESSCCEEEEECTTCSCCCCSSCCEESEEECCBSSCE-----EEEEEECCSCEEEEEEES
T ss_pred EecCCCEEEEEEcCCCCCCEEEccceEEEEecCCCCccccCCCCeeeeEEeCCCCcE-----EEEEEEeCCCeeEEEeeC
Confidence 567889988876442 1 333344433322112233333344333 22322 245677789999999999
Q ss_pred CCCcccccCCCeEEEEeeC
Q 027953 130 AEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 130 ~~~g~HC~~GmKl~I~V~~ 148 (216)
.. .|=..||-..+.|..
T Consensus 475 i~--~H~~~GM~~~~~v~~ 491 (521)
T 1v10_A 475 ID--WHLEAGLAVVFAEDI 491 (521)
T ss_dssp CH--HHHTTTCEEEEEESG
T ss_pred hH--HHHhCCCeEEEEECC
Confidence 98 899999999998854
No 95
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=25.49 E-value=1.1e+02 Score=27.30 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=0.0
Q ss_pred eeeeCCEEEEEEcCCCceEEEe-CcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEecc--ccceEEEecCCCcc-
Q 027953 59 TYNLGDYLIFNTNTNQTVIQTY-NETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTT--TGTNYFFSDAEDGL- 134 (216)
Q Consensus 59 ~F~VGDtLvF~y~~~~h~V~~V-~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~--~G~~YFiC~~~~g~- 134 (216)
+++.||+|+.++.+.-..-..+ -..-......++... ....|.+. ++.+++.. +|++||-|-.. +
T Consensus 50 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~----~I~PG~~~-----~Y~f~~~~~~~GT~wYH~H~~--~~ 118 (439)
T 2xu9_A 50 RVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFL----EIPPGESW-----TYEFTVPKELAGTFWYHPHLH--GR 118 (439)
T ss_dssp EECTTCEEEEEEEECSSSCBCCEEETCCCCTTTSCTTC----CBCTTCEE-----EEEEECCSSCCEEEEEECCCT--TS
T ss_pred EEeCCCEEEEEEEECCCCCcceEeCCCCCCccccCCcc----cCCCCCeE-----EEEEecCCCCCcceEeccCCC--Cc
Q ss_pred ---cccCCCeEEEEeeC
Q 027953 135 ---QCQRGVAFEISVNR 148 (216)
Q Consensus 135 ---HC~~GmKl~I~V~~ 148 (216)
|=..||...+.|..
T Consensus 119 t~~q~~~Gl~G~liV~~ 135 (439)
T 2xu9_A 119 VAPQLFAGLLGALVVES 135 (439)
T ss_dssp HHHHHHTTCCEEEEECC
T ss_pred hHHHHHhhCeEEEEEcC
No 96
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=25.14 E-value=70 Score=28.40 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=29.1
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~ 148 (216)
.+.|..+++|.++|.|-.. .|=..||...+.|..
T Consensus 400 ~i~~~~~~pG~~~~hch~~--~h~~~Gm~~~~~v~~ 433 (447)
T 2dv6_A 400 IVDFKIDRAGRYILVDHAL--SRLEHGLVGFLNVDG 433 (447)
T ss_dssp EEEEECCSCEEEEEEESSG--GGGGGTCCEEEEECS
T ss_pred EEEEECCCCEEEEEEecCc--CccccCCEEEEEEeC
Confidence 5568888999999999998 787889999999865
No 97
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=24.92 E-value=18 Score=27.41 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.6
Q ss_pred CeeeeCCEEEE
Q 027953 58 QTYNLGDYLIF 68 (216)
Q Consensus 58 ~~F~VGDtLvF 68 (216)
+.+++||.|+|
T Consensus 33 ~~i~vGD~I~f 43 (113)
T 1xne_A 33 KDIKRGDKIIF 43 (113)
T ss_dssp TTCCTTCEEEE
T ss_pred hccCCCCEEEE
Confidence 35899999999
No 98
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=23.67 E-value=1.1e+02 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.4
Q ss_pred eeEEEEeccccceEEEecCCCccccc-CCCeEEEEeeCC
Q 027953 112 VTIAVPLTTTGTNYFFSDAEDGLQCQ-RGVAFEISVNRG 149 (216)
Q Consensus 112 ~t~~V~L~~~G~~YFiC~~~~g~HC~-~GmKl~I~V~~~ 149 (216)
.++.++++++|++||-|......|=. .||...+.|...
T Consensus 89 ~~y~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~ 127 (339)
T 2zwn_A 89 YTYKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPK 127 (339)
T ss_dssp EEEEEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECS
T ss_pred EEEEEECCCCEEEEEEecCCchhhhhcCCceEeEEecCC
Confidence 46778888999999999875112444 899988888653
No 99
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=22.96 E-value=1.5e+02 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=27.5
Q ss_pred eEEEEecc-------------ccceEEEecCCC----cccccCCCeEEEEeeCCCC
Q 027953 113 TIAVPLTT-------------TGTNYFFSDAED----GLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 113 t~~V~L~~-------------~G~~YFiC~~~~----g~HC~~GmKl~I~V~~~~~ 151 (216)
++.+++++ .|++||-|-... ..|=..||.-.+.|.....
T Consensus 88 ~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 143 (276)
T 3kw8_A 88 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD 143 (276)
T ss_dssp EEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred EEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCC
Confidence 66677764 478889998741 1245679999999986543
No 100
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=22.67 E-value=1.3e+02 Score=25.65 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=20.4
Q ss_pred cccceEEEecCCC----cccccCCCeEEEEeeCC
Q 027953 120 TTGTNYFFSDAED----GLQCQRGVAFEISVNRG 149 (216)
Q Consensus 120 ~~G~~YFiC~~~~----g~HC~~GmKl~I~V~~~ 149 (216)
..|++||-|-... ..|=..||...|.|...
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~ 147 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 147 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECT
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeecc
Confidence 4588999997640 01234799999988754
No 101
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=22.62 E-value=1.1e+02 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred cceeEEEEeccccceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 110 QNVTIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 110 ~~~t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
+..++.+++++.|++||-|-.. .|=..||...|.|...
T Consensus 151 ~sftY~f~~~q~GT~WYHsH~~--~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 151 DTLTYKFQVTQYGTTWYHSHFS--LQYGDGLFGPLIINGP 188 (580)
T ss_dssp CEEEEEEECCCCEEEEEEECST--TGGGGTCEEEEEEECC
T ss_pred CeEEEEEECCCCcceEEeeccc--ccccCcCEEEEEeeCc
Confidence 3447788899999999999997 7888899999999753
No 102
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=22.42 E-value=1.5e+02 Score=27.35 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.9
Q ss_pred eEEEEeccccceEEEecCCCcccccCCCeEEEEeeCC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQRGVAFEISVNRG 149 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~~GmKl~I~V~~~ 149 (216)
.+++..+.+|...|-|-.. .|=..||-+.+.+...
T Consensus 492 ~Irf~aDNPG~W~~HCHi~--~H~~~GM~~~~~~~~~ 526 (552)
T 1aoz_A 492 AIRFVADNPGVWAFHCHIE--PHLHMGMGVVFAEGVE 526 (552)
T ss_dssp EEEEECCSCEEEEEEESSH--HHHHTTCEEEEEECGG
T ss_pred EEEEEcCCCeEEEEEeeeh--hHhhCCCeEEEEeCch
Confidence 4567778999999999998 8999999999988543
No 103
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.32 E-value=41 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCCcCccCCCCcccccccccCCeeeeCCEEEEE
Q 027953 28 TNHTVGGPAGWSFDAINNISATNYSSWAANQTYNLGDYLIFN 69 (216)
Q Consensus 28 ~~~~VGg~~GW~~~p~~n~~~~~Y~~WAs~~~F~VGDtLvF~ 69 (216)
.+.++||+.| . ..++-|-.. |..||.+.++
T Consensus 40 ~~~~l~DeTG-~---------I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 40 YQGYIEDDTA-R---------IRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEEECSSC-E---------EEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEEcCCC-e---------EEEEEEcCc--cCCCCEEEEE
Confidence 3678888877 2 558899887 9999999998
No 104
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=21.83 E-value=1.1e+02 Score=26.27 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=27.1
Q ss_pred eEEEEeccccceEEEecCCCccccc------CCCeEEEEeeC
Q 027953 113 TIAVPLTTTGTNYFFSDAEDGLQCQ------RGVAFEISVNR 148 (216)
Q Consensus 113 t~~V~L~~~G~~YFiC~~~~g~HC~------~GmKl~I~V~~ 148 (216)
.+.++.+++|.++|.|-.. .||. .||...|.+..
T Consensus 238 ~v~~~~~~pG~w~~hch~~--~H~~~~~~~~~gm~a~l~~~g 277 (339)
T 2zwn_A 238 DVIIEADNPGRFIFHDHVD--THVTAGGKHPGGPITVIEYDG 277 (339)
T ss_dssp EEEEECCSCSEEEEEECCG--GGSCBTTBSSCSSEEEEEETT
T ss_pred EEEEEeCCCeeEEEEEech--hhcccccccCCCcEEEEEECC
Confidence 5668888999999999988 8863 57877787754
No 105
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=21.70 E-value=17 Score=31.03 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=8.8
Q ss_pred ChhhHHHHHHHHHHHHHHhccCCCccceEEEEcCCCCCCc
Q 027953 1 MKTILLNLTVIALLITVVASDTPATAYTNHTVGGPAGWSF 40 (216)
Q Consensus 1 m~~~~~~l~~~~~l~~~~~~~a~a~~a~~~~VGg~~GW~~ 40 (216)
||.+++.++++++++. +.+++ +.....+-||+..||..
T Consensus 1 MKk~ll~~a~~~~~~~-~~A~A-a~~~~~~yvg~~~G~~~ 38 (346)
T 3nb3_A 1 MKKTAIAIAVALAGFA-TVAQA-APKDNTWYTGAKLGWSQ 38 (346)
T ss_dssp -----------------------CCCTTEEEEEEEEEEEC
T ss_pred CchhHHHHHHHHHHhh-hhhhh-ccccCCceEEEeeeeee
Confidence 8877665544333222 11111 12223466777666554
No 106
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=21.64 E-value=86 Score=31.79 Aligned_cols=83 Identities=7% Similarity=-0.027 Sum_probs=53.1
Q ss_pred CCeeeeCCEEEEEEcC-C----CceEEEeCcccCCCCCCCCCCCCCcceecCCCCccccceeEEEEeccccceEEEecCC
Q 027953 57 NQTYNLGDYLIFNTNT-N----QTVIQTYNETTFSSCTTDDASDDDTFHYNGGGNEFGQNVTIAVPLTTTGTNYFFSDAE 131 (216)
Q Consensus 57 ~~~F~VGDtLvF~y~~-~----~h~V~~V~k~~Yd~C~~~~~~~~~~~~~~~G~~~f~~~~t~~V~L~~~G~~YFiC~~~ 131 (216)
..+++.|+.+.|++-+ + .|. +.+....+. . ++...++.....|.. ..+.|+.+++|.|+|.|-..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~-~~i~Gh~f~---v-~p~~~dtv~I~pGer-----~dVlv~~~~pG~y~i~~h~~ 341 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHA-AFFHGQALT---N-KNYRIDTINLFPATL-----FDAYMVAQNPGEWMLSCQNL 341 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEE-EEETTCCEE---E-TTEEESEEEECBTCE-----EEEEEECCSCEEEEEEECSH
T ss_pred ceEECCCCEEEEEEEcCCcccceeE-EEEcCCEEE---E-CCeeecEEEECCCcE-----EEEEEEeCCCeeEEEEecCc
Confidence 3578899999999853 2 344 223332232 1 111112223334433 35678888899999999998
Q ss_pred CcccccCCCeEEEEeeCCCC
Q 027953 132 DGLQCQRGVAFEISVNRGLG 151 (216)
Q Consensus 132 ~g~HC~~GmKl~I~V~~~~~ 151 (216)
.|=..||...+.|.....
T Consensus 342 --~h~~~Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 342 --NHLKAGLQAFFQVQECNK 359 (1065)
T ss_dssp --HHHHTTCEEEEEEECSCC
T ss_pred --chhhCCCEEEEEEecCCC
Confidence 888899999999976443
No 107
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=21.16 E-value=42 Score=25.50 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=30.9
Q ss_pred ceEEEEcCC---CCCCcCccCCCCcc----cccccccCCeeeeCCEEEEEE
Q 027953 27 YTNHTVGGP---AGWSFDAINNISAT----NYSSWAANQTYNLGDYLIFNT 70 (216)
Q Consensus 27 a~~~~VGg~---~GW~~~p~~n~~~~----~Y~~WAs~~~F~VGDtLvF~y 70 (216)
...|+||+. ..|+....-.-... .|..|.....+..|..+.|||
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKy 73 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRY 73 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEE
Confidence 457899983 46986410000112 688999999999999999999
No 108
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=20.59 E-value=93 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=8.1
Q ss_pred EEEEeccccceEEEecC
Q 027953 114 IAVPLTTTGTNYFFSDA 130 (216)
Q Consensus 114 ~~V~L~~~G~~YFiC~~ 130 (216)
+.|+| +.|..|++|.=
T Consensus 20 ~~v~l-e~g~~~~~C~C 35 (87)
T 3tbn_A 20 YPVTV-EAGKTYHWCAC 35 (87)
T ss_dssp EEEEE-CTTCCEEECSS
T ss_pred EEEEe-CCCCEEEEeeC
Confidence 33555 34555556553
No 109
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=20.54 E-value=81 Score=25.54 Aligned_cols=29 Identities=0% Similarity=0.004 Sum_probs=21.2
Q ss_pred ccccCCeeeeCCEEEEEEcCCCceEEEeC
Q 027953 53 SWAANQTYNLGDYLIFNTNTNQTVIQTYN 81 (216)
Q Consensus 53 ~WAs~~~F~VGDtLvF~y~~~~h~V~~V~ 81 (216)
-|....+|..||.|.|.|.++....+.++
T Consensus 133 ~F~~~~~~~kGd~i~~~~~p~~~l~~~~~ 161 (205)
T 4doo_A 133 LFKDEYKIPRNSTIDLTKDPGHVLSVAIE 161 (205)
T ss_dssp GGTTCCCCCTTCEEEEEEETTTEEEEEET
T ss_pred HhccCCCCCCCCEEEEEEcCCCcEEEEEC
Confidence 35556689999999999988765544443
Done!