BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027954
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 77/112 (68%), Gaps = 11/112 (9%)
Query: 111 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMT----IVVCGIAKM 166
M ++ F+EDQ R+E ++RS+ Q++N+++++ S+ +S P+ IV+ GIAK+
Sbjct: 344 MNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSV-----LSAPVNQTSAIVMGGIAKV 398
Query: 167 FVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP--KRSVPRLFR 216
FVGE+VE AR +M E E+GPIRP HIREAYRRLK +P K+SVP+ +
Sbjct: 399 FVGEIVELARSIMEEWRETGPIRPRHIREAYRRLKESNSIPYYKKSVPKSMK 450
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 107 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM 166
++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKV 160
Query: 167 FVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 207
FVGE+VE A V + E+ P++P H+REA RRLK +G++P
Sbjct: 161 FVGEVVEEALDVCEKWGETPPLQPKHMREAVRRLKSKGQIP 201
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 104 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 163
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 164 AKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 207
+K+FVGE+VE A V + E P++P H+REA RRLK +G++P
Sbjct: 158 SKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 104 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 163
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGI 157
Query: 164 AKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 207
+K+FVGE+VE A V + E P++P H+REA RRLK +G++P
Sbjct: 158 SKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 107 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM 166
++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+ SITG+ +S + I + GI+K+
Sbjct: 102 EIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTS-VSQNVVIAMSGISKV 160
Query: 167 FVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 207
FVGE+VE A V + E P++P H+REA RRLK +G++P
Sbjct: 161 FVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 111 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGE 170
MQ +++ FTE+Q++RYE +RRSA K+ ++RL+ +ITG +S + I + GIAK+FVGE
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC-SVSQNVVIAMSGIAKVFVGE 147
Query: 171 LVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 207
+VE A VM + ESG ++P IREA RRL+ + ++P
Sbjct: 148 VVEEALDVMEAQGESGALQPKFIREAVRRLRTKDRMP 184
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 14/159 (8%)
Query: 70 GPAAKMTMSKNKDEYD--EEDDEN------VDVELGKFPSSSDPAKMAKMQA--ILNQFT 119
P++K + N+ E + EEDD + + GK P +D K++ +L F
Sbjct: 43 APSSKEKENWNRQEENDLEEDDRDDFGTAAISKVAGK-PGETDDEANEKLRTKYLLESFD 101
Query: 120 EDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVM 179
E+QM RYE FRR+ L K+N+++L I +Q ++ + IV+ G +K+FVGE+VE AR +
Sbjct: 102 EEQMQRYEVFRRANLNKTNVKKLANQIL-NQSVTPNVAIVISGFSKVFVGEIVELARKIQ 160
Query: 180 TERNESGPIRPCHIREAYRRLKLEGKV--PKRSVPRLFR 216
+ ++GP+ P H+REAYR + ++ R V LFR
Sbjct: 161 DQWGDTGPLSPDHLREAYRLSRQNRRLYPQSRHVSHLFR 199
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 104 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGI 163
D + +M +L+ +E+Q++RYE RRSA K+ + L+ SITG + +S + I + GI
Sbjct: 87 DAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRSITG-RSVSENVAIAMAGI 145
Query: 164 AKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVPKRSVPRLF 215
AK+FVGE+VE A V E P++P H+REA RRLK +G P + ++
Sbjct: 146 AKVFVGEVVEEALDVCEMWGEMPPLQPKHLREAVRRLKPKGLFPNSNYKKIM 197
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 106 AKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK 165
A+ + + ++ +DQ NR+E F R++L K+ +++ L S +Q IS + + + + K
Sbjct: 119 AQDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKK-LASTVANQTISENIRVFLQAVGK 177
Query: 166 MFVGELVETARMV 178
++ GE++E A +V
Sbjct: 178 IYAGEIIELAMIV 190
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1
Length = 835
Score = 36.6 bits (83), Expect = 0.14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 46 AAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGK-----FP 100
A+V E +D DNLES V P A++ + + + + N DVE+GK FP
Sbjct: 234 ASVPNENDDFVDNLES----DVRVQPEARLNIGSKSNSLSSDGNSNQDVEIGKSKSVIFP 289
Query: 101 SSSDP 105
S DP
Sbjct: 290 QSYDP 294
>sp|Q5Y2C3|H2AY_TETTS Histone H2A.Y OS=Tetrahymena thermophila (strain SB210) GN=HTAY
PE=2 SV=2
Length = 388
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 139 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198
+RR L ++S I + G+ + E++ETA + + N I P HIREA+R
Sbjct: 296 LRRYLKQACKQFRVSSSCNIYLAGVLEYLAAEVLETAGNI-AKNNRLSRINPVHIREAFR 354
>sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens GN=TLN1 PE=1 SV=3
Length = 2541
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 42 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 101
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 102 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 143
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2
Length = 2541
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 42 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 101
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 102 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 143
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|P54939|TLN1_CHICK Talin-1 OS=Gallus gallus GN=TLN1 PE=1 SV=2
Length = 2541
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 42 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 101
G A AVT L D +++ A G YD+ D ++V F S
Sbjct: 768 GVAATAVTQALNDLLQHIKQHATGGQPIG------------RYDQATDTILNVTENIFSS 815
Query: 102 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 143
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGETDLENSRKLL 857
>sp|A8F4G0|RPOB_THELT DNA-directed RNA polymerase subunit beta OS=Thermotoga lettingae
(strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpoB PE=3
SV=1
Length = 1172
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 59 LESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVEL------GKFPS-SSDPAKMAKM 111
LES+ V A PAA+ T+ K D Y E D VE+ G+ P ++ A + +
Sbjct: 267 LESKIATVVRAHPAAQKTLEKMVDTYGEVDSSKAYVEIFRKLKPGEIPRVNTAKAYLTSL 326
Query: 112 QAILNQFTEDQMNRYESFRRSALQKSNMRRLLVSITG 148
+F + RY+ +R RR L + G
Sbjct: 327 YFSTERFELSDVGRYKINKRLT---QAYRRYLAQVKG 360
>sp|P74893|PRIM_SYNE7 DNA primase OS=Synechococcus elongatus (strain PCC 7942) GN=dnaG
PE=1 SV=3
Length = 694
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 107 KMAKMQAILNQFTEDQMNRYES------FRRS-ALQKSNMRRLLVSITGSQKISLPMTIV 159
++ ++ A+ QF E + R E RRS LQ+S +++ + +Q SL ++
Sbjct: 118 RLYEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLI 177
Query: 160 VCGIAKMFVGELVETARMVMTERNESG 186
K F +LVE A +V+ RN G
Sbjct: 178 E---QKRFPADLVEEAGLVVARRNGQG 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,496,173
Number of Sequences: 539616
Number of extensions: 2814999
Number of successful extensions: 10710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 10550
Number of HSP's gapped (non-prelim): 249
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)