Query 027954
Match_columns 216
No_of_seqs 124 out of 211
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 100.0 1.4E-41 4.8E-46 259.1 12.0 89 118-207 1-89 (89)
2 3b0c_W CENP-W, centromere prot 97.9 6.5E-05 2.2E-09 54.5 8.3 71 132-203 3-73 (76)
3 1n1j_B NF-YC; histone-like PAI 97.7 6.1E-05 2.1E-09 57.0 6.3 75 126-201 12-86 (97)
4 1b67_A Protein (histone HMFA); 97.6 8.9E-05 3.1E-09 52.1 5.1 68 132-201 1-68 (68)
5 4g92_C HAPE; transcription fac 97.5 0.00013 4.4E-09 57.3 5.2 72 128-200 36-107 (119)
6 1n1j_A NF-YB; histone-like PAI 97.2 0.001 3.4E-08 49.6 7.3 69 132-201 7-76 (93)
7 1jfi_A Transcription regulator 96.9 0.001 3.6E-08 50.4 4.7 70 131-201 9-78 (98)
8 2yfw_B Histone H4, H4; cell cy 96.9 0.0032 1.1E-07 48.1 7.3 67 133-201 29-95 (103)
9 1tzy_D Histone H4-VI; histone- 96.8 0.0032 1.1E-07 48.0 7.0 67 133-201 29-95 (103)
10 2byk_A Chrac-16; nucleosome sl 96.7 0.0014 4.6E-08 53.1 4.4 80 130-209 16-99 (140)
11 1ku5_A HPHA, archaeal histon; 96.7 0.0041 1.4E-07 44.0 6.2 65 132-198 5-69 (70)
12 2byk_B Chrac-14; nucleosome sl 96.7 0.0044 1.5E-07 49.2 7.0 69 132-201 8-77 (128)
13 1jfi_B DR1 protein, transcript 96.4 0.011 3.9E-07 49.7 8.4 70 132-202 14-83 (179)
14 1f1e_A Histone fold protein; a 96.3 0.0016 5.5E-08 53.6 2.4 82 132-214 3-91 (154)
15 2hue_C Histone H4; mini beta s 95.9 0.012 4.1E-07 43.3 5.3 67 132-200 9-75 (84)
16 1id3_B Histone H4; nucleosome 95.9 0.022 7.6E-07 43.6 6.8 66 133-200 28-93 (102)
17 1f1e_A Histone fold protein; a 95.9 0.017 5.9E-07 47.5 6.6 70 133-204 82-151 (154)
18 2nqb_C Histone H2A; nucleosome 95.8 0.025 8.6E-07 44.8 6.9 65 133-198 23-87 (123)
19 1tzy_A Histone H2A-IV; histone 95.7 0.026 9E-07 45.0 7.0 65 133-198 25-89 (129)
20 1id3_C Histone H2A.1; nucleoso 95.7 0.028 9.4E-07 45.0 6.9 65 133-198 25-89 (131)
21 3b0c_T CENP-T, centromere prot 95.5 0.027 9.2E-07 43.7 6.2 69 130-200 4-72 (111)
22 2f8n_K Histone H2A type 1; nuc 95.4 0.043 1.5E-06 45.0 7.1 65 133-198 44-108 (149)
23 2f8n_G Core histone macro-H2A. 95.2 0.056 1.9E-06 42.6 7.0 65 133-198 22-86 (120)
24 1taf_B TFIID TBP associated fa 95.0 0.1 3.5E-06 37.8 7.4 65 132-198 5-69 (70)
25 1f66_C Histone H2A.Z; nucleoso 94.7 0.084 2.9E-06 42.0 6.9 66 133-199 27-93 (128)
26 2jss_A Chimera of histone H2B. 93.8 0.21 7.3E-06 41.7 7.8 65 133-198 105-170 (192)
27 1h3o_B Transcription initiatio 93.7 0.33 1.1E-05 35.7 7.7 67 133-200 5-71 (76)
28 4dra_E Centromere protein X; D 92.9 0.48 1.6E-05 35.5 7.8 69 132-201 11-81 (84)
29 3b0b_C CENP-X, centromere prot 92.7 0.49 1.7E-05 35.1 7.4 71 131-202 6-78 (81)
30 2q2k_A Hypothetical protein; p 75.6 1.3 4.4E-05 31.8 1.8 18 188-205 50-68 (70)
31 2jss_A Chimera of histone H2B. 75.2 13 0.00045 30.8 8.2 63 137-200 7-69 (192)
32 1tzy_B Histone H2B; histone-fo 60.3 23 0.00079 28.3 6.4 64 137-201 40-103 (126)
33 2nqb_D Histone H2B; nucleosome 58.5 27 0.00091 27.8 6.5 64 137-201 37-100 (123)
34 1mhq_A ADP-ribosylation factor 55.0 12 0.00042 29.6 4.0 38 173-211 105-143 (148)
35 4fhr_B Flagellar motor switch 54.2 24 0.00083 29.6 6.0 69 133-206 132-212 (216)
36 1taf_A TFIID TBP associated fa 51.7 61 0.0021 22.9 8.0 60 138-199 6-65 (68)
37 1gng_X Frattide, glycogen synt 49.0 7 0.00024 25.6 1.4 12 193-204 26-37 (39)
38 1juq_A ADP-ribosylation factor 39.8 20 0.0007 28.9 3.1 36 170-206 114-149 (171)
39 2l5a_A Histone H3-like centrom 39.3 1.6E+02 0.0053 25.7 8.8 62 139-202 167-228 (235)
40 3ksy_A SOS-1, SON of sevenless 38.3 71 0.0024 32.4 7.4 67 131-199 100-168 (1049)
41 2gsv_A Hypothetical protein YV 35.4 1.2E+02 0.0042 22.2 6.4 43 152-203 22-69 (80)
42 3hjl_A Flagellar motor switch 33.4 73 0.0025 28.5 6.0 68 134-206 246-325 (329)
43 3pkr_A FLIG, flagellar motor s 31.6 51 0.0017 28.9 4.6 69 134-207 190-270 (279)
44 3g2s_A C-terminal fragment of 31.5 38 0.0013 26.8 3.4 34 172-206 114-147 (149)
45 3v9r_B MHF2, uncharacterized p 31.3 63 0.0021 24.4 4.4 44 134-177 2-47 (88)
46 2ly8_A Budding yeast chaperone 30.6 1.7E+02 0.0058 22.9 7.0 50 150-200 63-112 (121)
47 4afj_X Proto-oncogene FRAT1; t 29.2 14 0.00047 23.0 0.3 13 192-204 16-28 (30)
48 1x5b_A Signal transducing adap 27.7 75 0.0026 25.3 4.6 40 170-209 111-153 (163)
49 2hue_B Histone H3; mini beta s 27.1 1.6E+02 0.0055 21.2 5.9 65 134-199 4-72 (77)
50 3b0b_B CENP-S, centromere prot 25.6 78 0.0027 24.2 4.1 61 139-200 25-87 (107)
51 2w9y_A CE-FAR-7, fatty acid/re 24.6 1.1E+02 0.0039 24.5 5.1 39 163-201 83-121 (140)
52 1bh9_A TAFII18; histone fold, 24.1 1.3E+02 0.0045 19.5 4.5 40 139-178 6-45 (45)
53 3v9r_A MHF1, uncharacterized p 23.1 1.8E+02 0.006 21.6 5.5 60 139-199 18-79 (90)
54 3byi_A RHO GTPase activating p 22.8 1.6E+02 0.0056 23.5 5.8 59 127-199 55-118 (214)
55 2qxf_A Exodeoxyribonuclease I; 21.8 69 0.0023 29.9 3.7 31 116-146 417-447 (482)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=100.00 E-value=1.4e-41 Score=259.06 Aligned_cols=89 Identities=49% Similarity=0.823 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Q 027954 118 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAY 197 (216)
Q Consensus 118 fteEQ~dRYE~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~ 197 (216)
||+|||+|||.||||+|+|++|||||+++++ ++||+|++|+|+||||+|||||||+|++||++|++++||+|+||||||
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~ 79 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 8999999999999999999999999999986 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 027954 198 RRLKLEGKVP 207 (216)
Q Consensus 198 RRL~~~Gkvp 207 (216)
|||+.+|++|
T Consensus 80 rrl~~~g~~p 89 (89)
T 1bh9_B 80 RRLKSKGQIP 89 (89)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHcCCCC
Confidence 9999999997
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.88 E-value=6.5e-05 Score=54.45 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=63.0
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhc
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLE 203 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 203 (216)
..||++.|+|||.++.++..||.+...+|.-.+-+||-.|..+|.+++... .+.-|.++||..|.+.+..+
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~-~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFEN-KSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSBCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHH
Confidence 479999999999988777789999999999999999999999999997664 56689999999999988754
No 3
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.73 E-value=6.1e-05 Score=57.00 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 126 YESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 126 YE~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
-..|+...||-+.|||||..--....||....++++..+-+||.+|++.|-..... +.+.-|+|.||..|++...
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~-~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTED-NKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHTTCG
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHHhcCc
Confidence 45688999999999999988644457999999999999999999999999988654 4577899999999987643
No 4
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.59 E-value=8.9e-05 Score=52.11 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
+.||++.|+|||..+ +...++.....++.-.+..|+-.|.+.|-..... ..+.-|.|.||..|.++|+
T Consensus 1 ~~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~-~kRkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 1 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKH-AGRKTIKAEDIELARKMFK 68 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHGGGGC
T ss_pred CCCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHhcC
Confidence 469999999999998 6678999999999999999999999999988665 3566799999999998874
No 5
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.48 E-value=0.00013 Score=57.30 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=61.7
Q ss_pred HHHhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 128 SFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 128 ~fRRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
.|+...||-+.|||||..--....|+....++++..+-+||.+|++.|-.++... .+.=|+|.||..|++..
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~-krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDN-KRRTLQRSDIAAALSKS 107 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCccCHHHHHHHHhcC
Confidence 3677789999999999875555579999999999999999999999999987654 45679999999999764
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.23 E-value=0.001 Score=49.58 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=59.7
Q ss_pred ccCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtg-sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
..||++.|+|||..... ...|+.....++.-.+.+||-.|.+.|-.++... .+.-|++.||..|+++|.
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~-kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE-KRKTINGEDILFAMSTLG 76 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHTT
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 47999999999999843 3479999999999999999999999999997653 566799999999998664
No 7
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.89 E-value=0.001 Score=50.41 Aligned_cols=70 Identities=9% Similarity=0.271 Sum_probs=55.2
Q ss_pred hccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 131 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 131 RS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
...||=+.|||||..--....|+....++++..+-+|+.+|++.|-.+... ..+.-|+|.||..|++.-.
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~-~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQS-RNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT-C---CBCHHHHHTTCC---
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCeecHHHHHHHHhcCc
Confidence 357999999999987544457999999999999999999999999988654 3567899999999887643
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.87 E-value=0.0032 Score=48.11 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
.||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- .+.=|.|.||.-|++++.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA-KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHcC
Confidence 39999999999886 55679999999999999999999999999997754 455699999999999983
No 9
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.84 E-value=0.0032 Score=48.05 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
.||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- .+.=|.|.||.-|++++.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHcC
Confidence 49999999999886 54579999999999999999999999999997754 455699999999999873
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.72 E-value=0.0014 Score=53.13 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred HhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH----hcCC
Q 027954 130 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK----LEGK 205 (216)
Q Consensus 130 RRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~----~~Gk 205 (216)
....||-+.|||||..--....|+....++|+-.+-+||.+|++.|-.+....+.+.-|+|.||..|++... +.+-
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~di 95 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQI 95 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTT
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhcc
Confidence 456799999999998754445799999999999999999999999999973344677899999999998532 3355
Q ss_pred CCCC
Q 027954 206 VPKR 209 (216)
Q Consensus 206 vp~r 209 (216)
+|.+
T Consensus 96 vP~k 99 (140)
T 2byk_A 96 VPQK 99 (140)
T ss_dssp SCSC
T ss_pred ccch
Confidence 6644
No 11
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.69 E-value=0.0041 Score=43.99 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
+.||++.|+||+... |...+|..+...+..+++.|+-+|.+.|...... ..+.-|.|.+|.-|.+
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h-akRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH-AGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCHHHHHHHHH
Confidence 579999999999986 6678999999999999999999999999988664 3466799999998865
No 12
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.67 E-value=0.0044 Score=49.25 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=56.9
Q ss_pred ccCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtg-sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
..||.+.|+|||..+.. ...||.+...+|+=.+-+||..|..+|.+++... .+.-|++.||-.|+.++-
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~-kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ-NHKTITAKDILQTLTELD 77 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 47999999999997653 4469999999999999999999999999997653 567899999999987764
No 13
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.44 E-value=0.011 Score=49.74 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=61.5
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 202 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 202 (216)
..||+++|.|||.++..+.+|+.....+|.=.+-+||-.|..+|.+++... .+.-|.+.||-.|+..|.-
T Consensus 14 ~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~-~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 14 LTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS-EKKTISPEHVIQALESLGF 83 (179)
T ss_dssp CCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcCh
Confidence 369999999999998755689999999999999999999999999998753 5678999999999987753
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.32 E-value=0.0016 Score=53.64 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=67.6
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-------HhcC
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL-------KLEG 204 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL-------~~~G 204 (216)
+.||++.|+|||....|..+||......++-..+.|+-.|+..|-+.... ..+.-|.+.||..|..+| +..-
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~h-a~RKTv~a~DV~~a~~~lg~~~v~d~~~l 81 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDA-SGKKTLMEEHLKALADVLMVEGVEDYDGE 81 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHHHHHTCTTSTTCCSC
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCHHHHHHHHHhcccccCCccccc
Confidence 47999999999999877788999999999999999999999999999654 457789999999999988 3333
Q ss_pred CCCCCCCCCC
Q 027954 205 KVPKRSVPRL 214 (216)
Q Consensus 205 kvp~r~~~rl 214 (216)
.+|...+.|+
T Consensus 82 ~lP~a~V~Ri 91 (154)
T 1f1e_A 82 LFGRATVRRI 91 (154)
T ss_dssp CCCHHHHHHH
T ss_pred cCCccHHHHH
Confidence 5665444443
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.93 E-value=0.012 Score=43.30 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=58.3
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
..+|++.|+||+.+. |-..||..+.-.+..+.+.|+-+|+..|...+..- .+.=|.+.+|.-|++++
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha-~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 369999999999886 55579999999999999999999999999997754 45568899999998876
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.88 E-value=0.022 Score=43.57 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
.||++.|+||+.+. |-..||..+...+..+.+.|+-+|+..|...+..- .+.=|.+.+|.-|++++
T Consensus 28 ~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Ha-kRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 49999999999886 55579999999999999999999999999998754 45568999999999987
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.87 E-value=0.017 Score=47.47 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=62.6
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcC
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEG 204 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~G 204 (216)
.||++.|.||+... |..+||......+..+.+.|+-+|+.+|-+.... ..+.-|.|.||..|+++..-+|
T Consensus 82 ~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~h-a~RKTIt~eDV~~Al~~~~~~~ 151 (154)
T 1f1e_A 82 LFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADE-DGRKTVQGEDVEKAITYSMPKG 151 (154)
T ss_dssp CCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHSGGG
T ss_pred cCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHhcCCcc
Confidence 69999999999997 7779999999999999999999999999999664 3577899999999999887654
No 18
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.78 E-value=0.025 Score=44.76 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=57.2
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||-+-|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|.+
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHh
Confidence 57888899999987677789999999999999999999999998886553 467899999999988
No 19
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.74 E-value=0.026 Score=45.02 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||-+-|.|+|..-.+...|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|.+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEcHHHHHHHHh
Confidence 57888899999987677789999999999999999999999998886653 467899999999988
No 20
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.68 E-value=0.028 Score=45.02 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=57.1
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||-+-|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 57888899999987667789999999999999999999999998886553 467899999999988
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.54 E-value=0.027 Score=43.69 Aligned_cols=69 Identities=7% Similarity=0.112 Sum_probs=53.8
Q ss_pred HhccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 130 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 130 RRS~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
|-..|+++.|+||+... |..+||..+...+..+.+.|+-.|+..|......- .+.-|.+.+|.-|++|.
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA-~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHA-GRKTVEMADVELLMRRQ 72 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHC
Confidence 34579999999999987 44589999999999999999999999999886643 45568888888888774
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.37 E-value=0.043 Score=45.03 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=56.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||=+-|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~-krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHh
Confidence 46777899999987677789999999999999999999999998886543 467899999999988
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.16 E-value=0.056 Score=42.57 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||=+.|.|+|..-.-...|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|.+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN-KKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 57777899999886545689999999999999999999999998876543 467899999999988
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.98 E-value=0.1 Score=37.79 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred ccCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
+.||...||++..++ |-.++|++++..++--.-..+.||+.+|.+++..- .+.-|.+.+|..|++
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHa-kRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHA-KRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecHHHHHHHHc
Confidence 578999999998885 66689999999999999999999999999998854 456889999988875
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.69 E-value=0.084 Score=42.04 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=55.1
Q ss_pred cCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgs-qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
.||-.-|.|+|..-... ..|+....+.++++--.|+.||.|.|-..... ....-|.|.||.-|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeEcHHHHHHHHhc
Confidence 57778899999875423 37999999999999999999999999887654 35678999999999883
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=93.77 E-value=0.21 Score=41.68 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=55.2
Q ss_pred cCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 198 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgs-qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 198 (216)
.||=+.|+|+|..-.+. ..|+....+.++++--.++.||.|.|-...... ...-|.|.||+.|.+
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~-~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDL-KVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCHHHHHHHHh
Confidence 56777899999886444 489999999999999999999999998876543 467899999999987
No 27
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.67 E-value=0.33 Score=35.73 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=58.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
-|+|.++..|+.+|.++..+.+.+--++.-||=-||-.+++.|..+.+.|+ +..|.++.|.-.+.|-
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~-s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRK-SSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHhh
Confidence 378999999999999998899999999999999999999999999999885 4477777777666654
No 28
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=92.93 E-value=0.48 Score=35.50 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=56.6
Q ss_pred ccCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 132 SALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 132 S~f~K~~IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
.+|++..|.||+..... ..+|+.+.+.+++-+-++||-|-|..|...... .+.+-|.+.||..-+=.|.
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~-e~~~~le~e~LEki~pQLl 81 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQA-EDALRVDVDQLEKVLPQLL 81 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHHh
Confidence 48999999999885543 346999999999999999999999999886443 4677899999998766654
No 29
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=92.66 E-value=0.49 Score=35.09 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=57.2
Q ss_pred hccCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 027954 131 RSALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 202 (216)
Q Consensus 131 RS~f~K~~IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 202 (216)
...|++..|.||+..... ..+|+.+.+.+++-+-++||-|-|..|...... .+.+-|.+.||..-+=.|..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~-e~~~~le~~~LEki~pqLlL 78 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQA-EDLEKVDIEHVEKVLPQLLL 78 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecHHHHHHHHHHHHh
Confidence 678999999999987654 346899999999999999999999998887544 34567999999887666543
No 30
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=75.55 E-value=1.3 Score=31.76 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHhc-CC
Q 027954 188 IRPCHIREAYRRLKLE-GK 205 (216)
Q Consensus 188 LqP~HIREA~RRL~~~-Gk 205 (216)
-.-.|||||+|||.++ |+
T Consensus 50 tktahirealrryieeige 68 (70)
T 2q2k_A 50 TKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHHHHHHHHhcc
Confidence 3467999999999976 54
No 31
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=75.24 E-value=13 Score=30.78 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=52.9
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 137 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 137 ~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
.-|+|++.++.....+|....-+|..|..-++..|..+|..+... +....|.+.+|+.|+|.+
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~-~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAY-NKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHh
Confidence 458999999877678999999999999999999999999888653 456789999999998865
No 32
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=60.27 E-value=23 Score=28.27 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 137 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 137 ~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+..|+-|+|.|.
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHY-NKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhC
Confidence 358999999876667888878888888887888888888777553 4567899999999998764
No 33
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=58.49 E-value=27 Score=27.81 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=50.1
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 137 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 137 ~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+..|+-|+|.|.
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHY-NKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCHHHHHHHHHHhC
Confidence 348899999876667888877888888877777888888777553 4566899999999998764
No 34
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.03 E-value=12 Score=29.55 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCC-CCCCCC
Q 027954 173 ETARMVMTERNESGPIRPCHIREAYRRLKLEGK-VPKRSV 211 (216)
Q Consensus 173 EeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gk-vp~r~~ 211 (216)
++.+.+...|...=+=.|. |+++|+.|+.+|- .|..+.
T Consensus 105 ~kil~li~~W~~~f~~~p~-i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 105 GRVIEILFSWTVWFPEDIK-IRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHHHHHHcCCCch-HHHHHHHHHHcCCCCCCCCC
Confidence 4455556678765555675 9999999999995 555543
No 35
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=54.19 E-value=24 Score=29.65 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHH
Q 027954 133 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRL 200 (216)
Q Consensus 133 ~f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL 200 (216)
.++...|.+|+..| -++.+++++.|... .|.+.+-..|. .++++....||++...+.+| .|+|
T Consensus 132 ~ld~~~iq~llr~v-----~~~~L~~ALKga~~e~~e~il~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L 206 (216)
T 4fhr_B 132 KLDDRSIQLVLREV-----DTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRL 206 (216)
T ss_dssp GSCHHHHHHHHTTS-----CHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC-----CHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35555566665544 24578899988654 34444555444 44556677899999988766 5777
Q ss_pred HhcCCC
Q 027954 201 KLEGKV 206 (216)
Q Consensus 201 ~~~Gkv 206 (216)
-..|+|
T Consensus 207 ~~~GeI 212 (216)
T 4fhr_B 207 EEAGEI 212 (216)
T ss_dssp HHTTSC
T ss_pred HHCCCe
Confidence 788875
No 36
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=51.68 E-value=61 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 138 NMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 138 ~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
.|.+|+.+. |-+.+++.++..+.-++--|+.+|...|......- .+.-|....|+-|.+.
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA-grktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA-RKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHh
Confidence 477887774 66689999999999999999999999999997654 4678889999988764
No 37
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=48.97 E-value=7 Score=25.58 Aligned_cols=12 Identities=50% Similarity=0.636 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcC
Q 027954 193 IREAYRRLKLEG 204 (216)
Q Consensus 193 IREA~RRL~~~G 204 (216)
|.||+|||+..|
T Consensus 26 IkEAVrRlq~~~ 37 (39)
T 1gng_X 26 IKEAVRRLHSRR 37 (39)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHcc
Confidence 889999999876
No 38
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.79 E-value=20 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCCC
Q 027954 170 ELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 206 (216)
Q Consensus 170 ELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkv 206 (216)
++-++++.+...|...=+=.| .|+++|+.|+.+|-.
T Consensus 114 ~Vk~kil~li~~W~~~f~~~~-~i~~~y~~Lk~~G~~ 149 (171)
T 1juq_A 114 KVKTKVIELLYSWTMALPEEA-KIKDAYHMLKRQGIV 149 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHCCCC
Confidence 344556666677865444456 499999999999953
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=39.29 E-value=1.6e+02 Score=25.71 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHh
Q 027954 139 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 202 (216)
Q Consensus 139 IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 202 (216)
++||+.. .|-..||..+...+.++.|.|+-+|+..|....+.. .+.-+.+..|.-|++|+..
T Consensus 167 ~~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA-~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 167 DEEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp CCTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHHH
T ss_pred HHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHHhcCC
Confidence 3455433 355578999999999999999999999999997653 5666889999999998753
No 40
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=38.30 E-value=71 Score=32.36 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=52.0
Q ss_pred hcc--CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 131 RSA--LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 131 RS~--f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
|+. ||=..|.|++.... ..+|+....+-++++--.+..||.|.|=....... ..-|.|.||.-|++.
T Consensus 100 ~~~l~~pv~~~~~~l~~~~-~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~-~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 100 RNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIR-HYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSSCSSCHHHHHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCHHHHHHHHHH
T ss_pred cCCccccHHHHHHHhhccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcC-CceecCccccccccC
Confidence 454 56566889885544 35899999999999999999999999976655432 334999999999865
No 41
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=35.37 E-value=1.2e+02 Score=22.17 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCcCCCCCchHHHHHHHHHHhc
Q 027954 152 ISLPMTIVVCGIAKMFVGELVE-----TARMVMTERNESGPIRPCHIREAYRRLKLE 203 (216)
Q Consensus 152 Vs~nvvIavaGlaKvFVGELVE-----eAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 203 (216)
.+.+-+.+|.+.-|+.||-||. .|.-+.. -.||.|||.+.+.+
T Consensus 22 ~~edKIhAmNaYYrsVvstlvqDqltKNAvvlkR---------iqHLdEAY~KVk~e 69 (80)
T 2gsv_A 22 QSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKR---------IQHLDEAYNKVKRG 69 (80)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCSSSCHHHHHHH---------HHHHHHHHHHHHHC
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------HHHHHHHHHHHHhh
Confidence 4778899999999999999986 2333332 36999999999875
No 42
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=33.40 E-value=73 Score=28.46 Aligned_cols=68 Identities=21% Similarity=0.433 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHHH
Q 027954 134 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 201 (216)
Q Consensus 134 f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 201 (216)
+....|.+|+..| -++.+++++.|-.. .|..-+-..|. .++++....||++...+.+| .|+|-
T Consensus 246 lddr~iq~llrev-----~~~~L~~ALKga~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 246 LSDRDIIEILKVV-----DKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp SCHHHHHHHHTTS-----CHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 24578899987544 45555555554 45666778999999998876 56777
Q ss_pred hcCCC
Q 027954 202 LEGKV 206 (216)
Q Consensus 202 ~~Gkv 206 (216)
.+|+|
T Consensus 321 e~GeI 325 (329)
T 3hjl_A 321 DEGKI 325 (329)
T ss_dssp TSSSC
T ss_pred HCCCe
Confidence 88875
No 43
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=31.57 E-value=51 Score=28.92 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhCcCCCCCchHHHHH-------HHHHH
Q 027954 134 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 201 (216)
Q Consensus 134 f~K~~IKRLi~~vtgsqsVs~nvvIavaGlaK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 201 (216)
++...|.+|+..| -++.+++++.|-.. .|..-+-..|. .++++....||++...+.+| .|+|-
T Consensus 190 lddr~iq~llreV-----~~~~L~~ALKGa~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~ 264 (279)
T 3pkr_A 190 LDNFAIREILKVA-----DKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQ 264 (279)
T ss_dssp SCHHHHHHHHHHS-----CHHHHHHHTTTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554 14578888877554 44555555444 45666777999999998876 67888
Q ss_pred hcCCCC
Q 027954 202 LEGKVP 207 (216)
Q Consensus 202 ~~Gkvp 207 (216)
.+|+|-
T Consensus 265 e~GeI~ 270 (279)
T 3pkr_A 265 EKGVIQ 270 (279)
T ss_dssp HTTSSC
T ss_pred HCCCEE
Confidence 888753
No 44
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.48 E-value=38 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHhcCCC
Q 027954 172 VETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 206 (216)
Q Consensus 172 VEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkv 206 (216)
-++.+.+...|...=|=.|. |.++|+.|+.+|-+
T Consensus 114 k~kil~li~~W~~~f~~~p~-i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 114 KNKILELLYSWTVGLPEEVK-IAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCch-HHHHHHHHHHCcCc
Confidence 34455556678654444565 99999999999965
No 45
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=31.26 E-value=63 Score=24.38 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027954 134 LQKSNMRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARM 177 (216)
Q Consensus 134 f~K~~IKRLi~~vtgs--qsVs~nvvIavaGlaKvFVGELVEeAr~ 177 (216)
+|+..|-||+.....+ .+|+...+.+++-+-++||-|-|-.|..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e 47 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQ 47 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887644322 2588899999999999999999987743
No 46
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=30.62 E-value=1.7e+02 Score=22.87 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 150 QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 150 qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
..||..+...+.++.|.|+-+|+..|....+. ..+.-+...+|.-|++|.
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaeh-A~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEH-AKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCcHHHHHHHHHhC
Confidence 35788999999999999999999999998664 467788899999888764
No 47
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=29.23 E-value=14 Score=22.99 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcC
Q 027954 192 HIREAYRRLKLEG 204 (216)
Q Consensus 192 HIREA~RRL~~~G 204 (216)
-|+||+|||+.+|
T Consensus 16 likeAvrrl~sr~ 28 (30)
T 4afj_X 16 LIKEAVRRLHSRR 28 (30)
T ss_dssp HHHHHHHHTCC--
T ss_pred hHHHHHHHHHHhc
Confidence 3889999988655
No 48
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.68 E-value=75 Score=25.25 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCcCCCCCc--hHHHHHHHHHHhcCC-CCCC
Q 027954 170 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGK-VPKR 209 (216)
Q Consensus 170 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~Gk-vp~r 209 (216)
++-++++.+...|.+.-+=.| ..|+++|+.|+.+|- +|..
T Consensus 111 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~ 153 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPA 153 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 444556666677865433344 479999999999995 4443
No 49
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=27.09 E-value=1.6e+02 Score=21.20 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHh----cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 134 LQKSNMRRLLVSI----TGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 134 f~K~~IKRLi~~v----tgsqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
++|.-.-||+..+ .+...++...+.++.-.+-.|+-.|-|.|-.... ...+--|.|+.|+-|.|-
T Consensus 4 i~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~-HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 4 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAI-HAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSEECHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccCcHhhHHHHHHH
Confidence 4555555555554 3445678888889999999999999998876644 345678999999998653
No 50
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=25.60 E-value=78 Score=24.23 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=44.3
Q ss_pred HHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Q 027954 139 MRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 200 (216)
Q Consensus 139 IKRLi~~vtg--sqsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 200 (216)
|.||+....- +..+++.++.+|.-++--|+.+|-..|......- .+.-|.+..|+-|.||.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HA-gRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHA-KRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCcCCHHHHHHHHHhC
Confidence 6677666532 2468999999999999999988888887775543 44467777777777663
No 51
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=24.63 E-value=1.1e+02 Score=24.54 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Q 027954 163 IAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 201 (216)
Q Consensus 163 laKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 201 (216)
=+|-||.+|+...|.+..+.-...++-+..|+..+..|+
T Consensus 83 eak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~yk 121 (140)
T 2w9y_A 83 AAVEYAKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQ 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 378999999999999988876677888888887776665
No 52
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=24.12 E-value=1.3e+02 Score=19.54 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027954 139 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMV 178 (216)
Q Consensus 139 IKRLi~~vtgsqsVs~nvvIavaGlaKvFVGELVEeAr~V 178 (216)
|+.+|=..=..+.+.+..+.+|--+-.-||-+|+-+|.+|
T Consensus 6 i~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 6 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp HHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777655433344566678888888888888888888654
No 53
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=23.09 E-value=1.8e+02 Score=21.58 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=44.1
Q ss_pred HHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 139 MRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 139 IKRLi~~vtgs--qsVs~nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
|-|++...... -.+|+.++.++.-++--|+.+|-..+..... ...+.-|.+..|.-|.||
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~-HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFAR-HAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccCHHHHHHHHHh
Confidence 56667776431 3588888888888888888877777666644 345677889989888776
No 54
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=22.76 E-value=1.6e+02 Score=23.51 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=35.8
Q ss_pred HHHHhccCChhHHHHHHHHhcCCCCC--Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Q 027954 127 ESFRRSALQKSNMRRLLVSITGSQKI--SL---PMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 199 (216)
Q Consensus 127 E~fRRS~f~K~~IKRLi~~vtgsqsV--s~---nvvIavaGlaKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 199 (216)
..||.+. +...|++|...+..+..+ .. .-+.+++|+-|.|+-+| ..||-|..+.+.|..
T Consensus 55 GIfR~~G-~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreL-------------PePLl~~~l~~~~~~ 118 (214)
T 3byi_A 55 GIYRVSG-NLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFREL-------------PEPLFPYSFFEQFVE 118 (214)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHS-------------SSCSSCHHHHHHHHH
T ss_pred CccccCC-CHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhC-------------CCCCCCHHHHHHHHH
Confidence 5688877 466677775554322222 11 13577899999999876 346666655554433
No 55
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=21.78 E-value=69 Score=29.93 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHhccCChhHHHHHHHHh
Q 027954 116 NQFTEDQMNRYESFRRSALQKSNMRRLLVSI 146 (216)
Q Consensus 116 ~~fteEQ~dRYE~fRRS~f~K~~IKRLi~~v 146 (216)
..||+++..||..||+..|...++..+++.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4689999999999999999988777775554
Done!