BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027959
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
          Length = 170

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 40  GIFHSGIEVHGKEYGFGAHDF---PVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRT 96
           GI+H+ I VH  E+ FG+      P  G     P S         + +G   +    F  
Sbjct: 37  GIWHTSIVVHKDEFFFGSGGISSCPPGGTLLGPPDSV--------VDVGSTEVTEEIFLE 88

Query: 97  FIE-CSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWV 137
           ++     S + G+ YNL   NCN F++++A  LTG+ IP ++
Sbjct: 89  YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYI 130


>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
          Length = 168

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 40  GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIE 99
           GI+H+ I VH  E+ FG+     SG+    P         + + +G   +    F  ++ 
Sbjct: 35  GIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLS 89

Query: 100 -CSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWV 137
               S + G+ YNL   NCN F++++A  LTG+ IP ++
Sbjct: 90  SLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYI 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,377,829
Number of Sequences: 62578
Number of extensions: 249223
Number of successful extensions: 528
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 3
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)