Query 027959
Match_columns 216
No_of_seqs 180 out of 470
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 1.5E-58 3.3E-63 397.9 15.9 151 16-166 12-164 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 8E-48 1.7E-52 316.2 10.0 138 18-155 1-151 (151)
3 PF04970 LRAT: Lecithin retino 93.9 0.039 8.5E-07 43.4 2.3 37 85-124 82-119 (125)
4 PF05608 DUF778: Protein of un 93.5 0.19 4.1E-06 41.5 5.6 40 90-129 75-114 (136)
5 PF09601 DUF2459: Protein of u 75.4 4.5 9.7E-05 34.3 4.2 42 87-129 96-160 (173)
6 PF08405 Calici_PP_N: Viral po 66.2 11 0.00025 35.4 5.0 84 40-139 21-107 (358)
7 PF13387 DUF4105: Domain of un 60.0 13 0.00028 30.9 3.9 54 81-134 97-154 (176)
8 PF11931 DUF3449: Domain of un 50.6 5.2 0.00011 35.0 0.0 22 130-151 85-106 (196)
9 PF11022 DUF2611: Protein of u 48.3 11 0.00025 27.9 1.5 27 129-155 8-34 (71)
10 TIGR02117 chp_urease_rgn conse 46.2 28 0.0006 30.5 3.8 41 87-128 126-190 (208)
11 cd01781 AF6_RA_repeat2 Ubiquit 45.7 45 0.00098 26.2 4.6 51 64-115 2-54 (100)
12 PF04046 PSP: PSP; InterPro: 41.1 26 0.00055 24.2 2.2 25 120-144 5-31 (48)
13 KOG3150 Uncharacterized conser 38.6 64 0.0014 27.8 4.7 50 82-131 80-132 (182)
14 smart00581 PSP proline-rich do 36.1 34 0.00074 24.2 2.3 24 121-144 10-35 (54)
15 PF13964 Kelch_6: Kelch motif 33.1 36 0.00079 21.9 2.0 20 41-60 3-22 (50)
16 cd02998 PDI_a_ERp38 PDIa famil 31.6 18 0.0004 25.8 0.4 46 92-137 34-80 (105)
17 PF15643 Tox-PL-2: Papain fold 31.2 28 0.00061 27.5 1.4 45 91-142 2-46 (100)
18 PF07646 Kelch_2: Kelch motif; 28.0 54 0.0012 21.1 2.1 17 42-58 4-20 (49)
19 PF14898 DUF4491: Domain of un 25.4 27 0.00058 27.3 0.3 21 36-58 13-33 (94)
20 PF04412 DUF521: Protein of un 25.1 70 0.0015 30.8 3.1 46 86-132 267-316 (400)
21 PF01288 HPPK: 7,8-dihydro-6-h 24.2 1.1E+02 0.0024 24.3 3.7 43 63-105 34-77 (127)
22 KOG3967 Uncharacterized conser 22.9 26 0.00056 31.9 -0.2 58 48-118 14-71 (297)
23 KOG2636 Splicing factor 3a, su 22.9 39 0.00085 33.3 1.0 22 130-151 385-406 (497)
24 PF12419 DUF3670: SNF2 Helicas 22.6 95 0.0021 25.1 3.0 25 77-101 72-96 (141)
25 PF03153 TFIIA: Transcription 22.0 70 0.0015 29.6 2.4 39 15-57 328-368 (375)
26 PF13854 Kelch_5: Kelch motif 21.4 88 0.0019 19.7 2.2 18 42-59 7-24 (42)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-58 Score=397.88 Aligned_cols=151 Identities=55% Similarity=1.086 Sum_probs=146.0
Q ss_pred CcceEEEEEEeCCCCcchhhhcceeeeeeceEEcCeEEeecCcCCCCCCeEeecCCCCCCCceEEEEEccceeCCHHHHH
Q 027959 16 NETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFR 95 (216)
Q Consensus 16 ~~~~V~LnVYDLs~~n~~~~~lG~Gi~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~~~~~e~~ 95 (216)
...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|+.+|+|+||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhhhh--hhcccCCcccccccCCcCCCCC
Q 027959 96 TFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLG--ALCGCLLPESLQATTVKQLPEY 166 (216)
Q Consensus 96 ~~l~~L~~~f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~IP~wInRla~~g--~~~~cllP~~l~~~~v~~~p~~ 166 (216)
+||++|+++|+|++||||+|||||||+++|++|+||+||+||||||++| ++|+|++|.....+.+.+.+.-
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~ 164 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSV 164 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999 8999999998888877776653
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=8e-48 Score=316.19 Aligned_cols=138 Identities=48% Similarity=0.900 Sum_probs=105.7
Q ss_pred ceEEEEEEeCCCCcc------hhhhcce---eeeeeceEEcCeEEeecCcCCCCCCeEeecCCC-CCCCceEEEEEccce
Q 027959 18 TQVVLNVYDLTPVNS------YTYWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRS-CPGFIYRASILLGRI 87 (216)
Q Consensus 18 ~~V~LnVYDLs~~n~------~~~~lG~---Gi~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~-~pg~~~r~sI~LG~T 87 (216)
.+|+||||||++.|. +..+||. |||||||||+|+||+||+++.+.+||+++.|+. .++++|+++|.||.|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 479999999996654 5678998 999999999999999999999989999999998 788899999999999
Q ss_pred eCCHHHHHHHHHHhhcCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhhhhh---hcccCCcccc
Q 027959 88 NMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGA---LCGCLLPESL 155 (216)
Q Consensus 88 ~~~~~e~~~~l~~L~~~f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~IP~wInRla~~g~---~~~cllP~~l 155 (216)
.+++++|+++|++|+++|++++||||+|||||||++||++|+||+||+||||+|+++. +..|++|.-|
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~~~ 151 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPMLW 151 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC---
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999877 6678888643
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=93.95 E-value=0.039 Score=43.35 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=18.6
Q ss_pred cceeCCHHHHHHHHHHh-hcCCCCCcccccccccchHHHHH
Q 027959 85 GRINMPPSEFRTFIECS-ASEYHGDTYNLISKNCNHFTDDI 124 (216)
Q Consensus 85 G~T~~~~~e~~~~l~~L-~~~f~g~tY~Ll~~NCNHFs~~l 124 (216)
.....+.+++-+-.+++ ..++ .|||+.+||=||+.-.
T Consensus 82 ~~~~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 82 RYKPFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWC 119 (125)
T ss_dssp TS--S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHH
Confidence 34445555544443333 2233 8999999999998754
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=93.50 E-value=0.19 Score=41.49 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhhcCCCCCcccccccccchHHHHHHHHhc
Q 027959 90 PPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLT 129 (216)
Q Consensus 90 ~~~e~~~~l~~L~~~f~g~tY~Ll~~NCNHFs~~l~~~L~ 129 (216)
+.+..++-|++-.++|....|+|+..||.+|-....+.|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 5667888888889999999999999999999988888774
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=75.43 E-value=4.5 Score=34.32 Aligned_cols=42 Identities=19% Similarity=0.473 Sum_probs=33.0
Q ss_pred eeCCHHHHHHHHHHhhcCCCCC-----------------------cccccccccchHHHHHHHHhc
Q 027959 87 INMPPSEFRTFIECSASEYHGD-----------------------TYNLISKNCNHFTDDIAWRLT 129 (216)
Q Consensus 87 T~~~~~e~~~~l~~L~~~f~g~-----------------------tY~Ll~~NCNHFs~~l~~~L~ 129 (216)
..+++++++++++.|+..|.-+ +|+|+ ++||+-+++..+...
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG 160 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG 160 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence 3689999999999887666543 47765 799999999887663
No 6
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=66.17 E-value=11 Score=35.39 Aligned_cols=84 Identities=24% Similarity=0.476 Sum_probs=49.3
Q ss_pred eeeeeceEEcCeEEeecCcCCC---CCCeEeecCCCCCCCceEEEEEccceeCCHHHHHHHHHHhhcCCCCCcccccccc
Q 027959 40 GIFHSGIEVHGKEYGFGAHDFP---VSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKN 116 (216)
Q Consensus 40 Gi~HTgVeV~G~EY~FG~~~~~---~sGI~~~~P~~~pg~~~r~sI~LG~T~~~~~e~~~~l~~L~~~f~g~tY~Ll~~N 116 (216)
-+||-||-|.+ -+-+|-|..+ +.|-+.++|=..+ +| .+..=+-.++.+++++.+ .+.|. |..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~---WR-vvy~P~~~~~~~~L~~l~---ge~~P---Y~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW---WR-VVYTPRQRLSYDQLRKLE---GEKFP---YAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc---cc-cccCCCCCCCHHHHHHhc---CCCCC---chhhccc
Confidence 58999998743 6677766543 2344455554432 22 233333445666554432 34554 9999999
Q ss_pred cchHHHHHHHHhcCCCCChHHHH
Q 027959 117 CNHFTDDIAWRLTGKHIPGWVNR 139 (216)
Q Consensus 117 CNHFs~~l~~~L~Gk~IP~wInR 139 (216)
|=||| |+-|.-+. .|++|
T Consensus 90 Cy~fc---c~vl~L~D--~wl~r 107 (358)
T PF08405_consen 90 CYTFC---CWVLGLND--SWLKR 107 (358)
T ss_pred hHHHh---HhhcCCCh--HHHhh
Confidence 99999 77654321 45555
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=59.99 E-value=13 Score=30.92 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=42.6
Q ss_pred EEEccceeCCHHHHHHHHHHhhcC----CCCCcccccccccchHHHHHHHHhcCCCCC
Q 027959 81 SILLGRINMPPSEFRTFIECSASE----YHGDTYNLISKNCNHFTDDIAWRLTGKHIP 134 (216)
Q Consensus 81 sI~LG~T~~~~~e~~~~l~~L~~~----f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~IP 134 (216)
.|..=...+++++.+.++..|-+. -++-.|+.+..||=.-.-++.....++.+|
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 466666789999999988877533 355689999999999998888888876554
No 8
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=50.62 E-value=5.2 Score=34.97 Aligned_cols=22 Identities=41% Similarity=0.812 Sum_probs=0.0
Q ss_pred CCCCChHHHHHhhhhhhcccCC
Q 027959 130 GKHIPGWVNRLARLGALCGCLL 151 (216)
Q Consensus 130 Gk~IP~wInRla~~g~~~~cll 151 (216)
|||||-|+=.|.-++.-+.|=+
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEI 106 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEI 106 (196)
T ss_dssp ----------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEe
Confidence 8999999999999998777765
No 9
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=48.32 E-value=11 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.1
Q ss_pred cCCCCChHHHHHhhhhhhcccCCcccc
Q 027959 129 TGKHIPGWVNRLARLGALCGCLLPESL 155 (216)
Q Consensus 129 ~Gk~IP~wInRla~~g~~~~cllP~~l 155 (216)
.||.||.+++-++-||+++-...+...
T Consensus 8 ~Gr~V~~H~LAi~tLg~~~~~~~~~~~ 34 (71)
T PF11022_consen 8 FGRQVQSHYLAIATLGTVFGGVYLATS 34 (71)
T ss_pred cccccccchhHHHHHHHHHHHheeccC
Confidence 499999999999999998766666544
No 10
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=46.23 E-value=28 Score=30.48 Aligned_cols=41 Identities=12% Similarity=0.392 Sum_probs=29.1
Q ss_pred eeCCHHHHHHHHHHhhcCCCC------------------------CcccccccccchHHHHHHHHh
Q 027959 87 INMPPSEFRTFIECSASEYHG------------------------DTYNLISKNCNHFTDDIAWRL 128 (216)
Q Consensus 87 T~~~~~e~~~~l~~L~~~f~g------------------------~tY~Ll~~NCNHFs~~l~~~L 128 (216)
..+++++++++++-++..|.- ..|||+ ++||+-|.+..+.-
T Consensus 126 l~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~aA 190 (208)
T TIGR02117 126 LLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRSA 190 (208)
T ss_pred EEcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHHc
Confidence 468899999888877633321 136665 79999999887654
No 11
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=45.73 E-value=45 Score=26.24 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=36.4
Q ss_pred CeEeecCCC-CCCCceEEEEEccceeCCHHHHHHHHHHhh-cCCCCCccccccc
Q 027959 64 GVFEVEPRS-CPGFIYRASILLGRINMPPSEFRTFIECSA-SEYHGDTYNLISK 115 (216)
Q Consensus 64 GI~~~~P~~-~pg~~~r~sI~LG~T~~~~~e~~~~l~~L~-~~f~g~tY~Ll~~ 115 (216)
|+.++-|+. +|+..|+ +|.+...+..++-+.+.|++.. ++-.++.|.|..-
T Consensus 2 G~LKIYg~~L~~~~~YK-SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV 54 (100)
T cd01781 2 GTLKIYGGSLVPTRPYK-TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEV 54 (100)
T ss_pred CeEEEcCCcccCCCCeE-EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEE
Confidence 566666665 3565565 8999999999999999998765 4444566666543
No 12
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=41.10 E-value=26 Score=24.21 Aligned_cols=25 Identities=32% Similarity=0.690 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCCCChHHHHHhhhh
Q 027959 120 FTDDIAWRLT--GKHIPGWVNRLARLG 144 (216)
Q Consensus 120 Fs~~l~~~L~--Gk~IP~wInRla~~g 144 (216)
.|+++-++|. ...+|.||.|+.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 3677888885 457999999999988
No 13
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=64 Score=27.80 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred EEccceeC---CHHHHHHHHHHhhcCCCCCcccccccccchHHHHHHHHhcCC
Q 027959 82 ILLGRINM---PPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGK 131 (216)
Q Consensus 82 I~LG~T~~---~~~e~~~~l~~L~~~f~g~tY~Ll~~NCNHFs~~l~~~L~Gk 131 (216)
+.|+.+.+ .+..+++.+.+-+++|.-.+|+|+.-||..|-.-...+|.=+
T Consensus 80 ~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~ 132 (182)
T KOG3150|consen 80 IQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYG 132 (182)
T ss_pred EEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcC
Confidence 44444432 346788899999999999999999999999987776766533
No 14
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=36.08 E-value=34 Score=24.17 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=19.8
Q ss_pred HHHHHHHhc--CCCCChHHHHHhhhh
Q 027959 121 TDDIAWRLT--GKHIPGWVNRLARLG 144 (216)
Q Consensus 121 s~~l~~~L~--Gk~IP~wInRla~~g 144 (216)
|+++-++|. -..+|.|+.|+.++|
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 677888885 356999999999998
No 15
>PF13964 Kelch_6: Kelch motif
Probab=33.07 E-value=36 Score=21.91 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=16.6
Q ss_pred eeeeceEEcCeEEeecCcCC
Q 027959 41 IFHSGIEVHGKEYGFGAHDF 60 (216)
Q Consensus 41 i~HTgVeV~G~EY~FG~~~~ 60 (216)
..|+.|.+.|+=|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999999543
No 16
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.64 E-value=18 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCC-CcccccccccchHHHHHHHHhcCCCCChHH
Q 027959 92 SEFRTFIECSASEYHG-DTYNLISKNCNHFTDDIAWRLTGKHIPGWV 137 (216)
Q Consensus 92 ~e~~~~l~~L~~~f~g-~tY~Ll~~NCNHFs~~l~~~L~Gk~IP~wI 137 (216)
.++...+++++.++.. ..+.++.=||+....++|+.+....+|.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 3456677777777763 468888999999767888888888888654
No 17
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=31.24 E-value=28 Score=27.49 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhh
Q 027959 91 PSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR 142 (216)
Q Consensus 91 ~~e~~~~l~~L~~~f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~IP~wInRla~ 142 (216)
+++++..|..++.+|. ---|--|++++.++|.-++||.-+-||-.
T Consensus 2 ~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 2 PAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred HHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 5678889999988874 33699999999999999999987766543
No 18
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=27.95 E-value=54 Score=21.13 Aligned_cols=17 Identities=41% Similarity=0.596 Sum_probs=15.3
Q ss_pred eeeceEEcCeEEeecCc
Q 027959 42 FHSGIEVHGKEYGFGAH 58 (216)
Q Consensus 42 ~HTgVeV~G~EY~FG~~ 58 (216)
-|+.+++.++=|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48899999999999986
No 19
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.40 E-value=27 Score=27.33 Aligned_cols=21 Identities=38% Similarity=0.797 Sum_probs=15.2
Q ss_pred hcceeeeeeceEEcCeEEeecCc
Q 027959 36 WFGFGIFHSGIEVHGKEYGFGAH 58 (216)
Q Consensus 36 ~lG~Gi~HTgVeV~G~EY~FG~~ 58 (216)
++-.|+||--|. .+ ||+||..
T Consensus 13 FliIG~fHpiVI-k~-EYyfg~~ 33 (94)
T PF14898_consen 13 FLIIGLFHPIVI-KG-EYYFGTR 33 (94)
T ss_pred HHHHHccCeEEE-EE-EEecCCC
Confidence 445799998554 44 9999963
No 20
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=25.10 E-value=70 Score=30.76 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=38.3
Q ss_pred ceeCCHHHHHHHHHHhhcCCCCCcccccccccchHH----HHHHHHhcCCC
Q 027959 86 RINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFT----DDIAWRLTGKH 132 (216)
Q Consensus 86 ~T~~~~~e~~~~l~~L~~~f~g~tY~Ll~~NCNHFs----~~l~~~L~Gk~ 132 (216)
+..++.+++++..++|. .-..+.-|++.==|+||| .+++++|-||+
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56688999999999997 667788999999999999 45667777765
No 21
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=24.21 E-value=1.1e+02 Score=24.28 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=29.7
Q ss_pred CCeEeecCCCCCCC-ceEEEEEccceeCCHHHHHHHHHHhhcCC
Q 027959 63 SGVFEVEPRSCPGF-IYRASILLGRINMPPSEFRTFIECSASEY 105 (216)
Q Consensus 63 sGI~~~~P~~~pg~-~~r~sI~LG~T~~~~~e~~~~l~~L~~~f 105 (216)
|-+++++|-...+. .|--.+..+.|.+++.++.+.+.++..++
T Consensus 34 S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~ 77 (127)
T PF01288_consen 34 SSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRL 77 (127)
T ss_dssp EEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred CCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHh
Confidence 35777777554333 47778999999999999999998876443
No 22
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.94 E-value=26 Score=31.94 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=30.6
Q ss_pred EcCeEEeecCcCCCCCCeEeecCCCCCCCceEEEEEccceeCCHHHHHHHHHHhhcCCCCCcccccccccc
Q 027959 48 VHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCN 118 (216)
Q Consensus 48 V~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~~~~~e~~~~l~~L~~~f~g~tY~Ll~~NCN 118 (216)
.-|-+|+|.+ .|+.+..-...| |.|.-+-++-.-. .--+.|.+.-+---|.||.+|||
T Consensus 14 L~~fgYaFde-----kGvLr~iktgeP-F~fn~~eD~~enq-------k~ye~Lge~i~~~VYeLLEk~c~ 71 (297)
T KOG3967|consen 14 LEGFGYAFDE-----KGVLRHIKTGEP-FVFNYREDLHENQ-------KRYEALGEIITKYVYELLEKDCN 71 (297)
T ss_pred HhhcceeecC-----cceeeeccCCCC-eEEecHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 4577899986 488876543334 3332222222211 11122333333345999999997
No 23
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=22.90 E-value=39 Score=33.29 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.1
Q ss_pred CCCCChHHHHHhhhhhhcccCC
Q 027959 130 GKHIPGWVNRLARLGALCGCLL 151 (216)
Q Consensus 130 Gk~IP~wInRla~~g~~~~cll 151 (216)
|||||-|+=+|--++.-++|=+
T Consensus 385 GkPiPyWLyKLHGL~~ey~CEI 406 (497)
T KOG2636|consen 385 GKPIPYWLYKLHGLDIEYNCEI 406 (497)
T ss_pred CCcCchHHHhhcCCCcccceee
Confidence 8999999999998888777755
No 24
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.56 E-value=95 Score=25.08 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred ceEEEEEccceeCCHHHHHHHHHHh
Q 027959 77 IYRASILLGRINMPPSEFRTFIECS 101 (216)
Q Consensus 77 ~~r~sI~LG~T~~~~~e~~~~l~~L 101 (216)
.|+=.+.||...+|++||+++++.=
T Consensus 72 ~f~W~lalGd~~Ls~eEf~~L~~~~ 96 (141)
T PF12419_consen 72 DFDWELALGDEELSEEEFEQLVEQK 96 (141)
T ss_pred cceEEEEECCEECCHHHHHHHHHcC
Confidence 5777899999999999999998753
No 25
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=22.04 E-value=70 Score=29.57 Aligned_cols=39 Identities=36% Similarity=0.597 Sum_probs=27.9
Q ss_pred CCcceEEEEEEeCC-CC-cchhhhcceeeeeeceEEcCeEEeecC
Q 027959 15 INETQVVLNVYDLT-PV-NSYTYWFGFGIFHSGIEVHGKEYGFGA 57 (216)
Q Consensus 15 ~~~~~V~LnVYDLs-~~-n~~~~~lG~Gi~HTgVeV~G~EY~FG~ 57 (216)
.....|.|-.||=- +. |.+...|..||.| |+||+|.|..
T Consensus 328 ~~~~~~~~c~~~kv~r~k~~wk~~lk~g~~~----~~~~d~~f~~ 368 (375)
T PF03153_consen 328 FDTDNVVLCQYDKVTRVKNKWKCTLKDGIMH----INGKDYVFQK 368 (375)
T ss_dssp STTS-EEEEEEEEEEEETTEEEEEEEEEEEE----ETTEEEEEEE
T ss_pred cCcCCEEEEEeeccccccceeEEEeeeeEEE----ECCeEEEEee
Confidence 34667999999954 32 3344456789998 6999999986
No 26
>PF13854 Kelch_5: Kelch motif
Probab=21.38 E-value=88 Score=19.73 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.4
Q ss_pred eeeceEEcCeEEeecCcC
Q 027959 42 FHSGIEVHGKEYGFGAHD 59 (216)
Q Consensus 42 ~HTgVeV~G~EY~FG~~~ 59 (216)
-|+.+.+.++=|-|||..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 588999999999999854
Done!