Query 027959
Match_columns 216
No_of_seqs 180 out of 470
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 2E-51 6.9E-56 343.4 11.2 132 17-153 6-150 (168)
2 4dot_A Group XVI phospholipase 92.6 0.054 1.9E-06 43.5 2.3 18 108-125 104-121 (140)
3 2lkt_A Retinoic acid receptor 92.3 0.046 1.6E-06 42.0 1.5 16 109-124 105-120 (125)
4 4dpz_X HRAS-like suppressor 2; 92.2 0.045 1.6E-06 43.8 1.4 18 108-125 104-121 (137)
5 1wxa_A Afadin, AF-6 protein; R 38.8 65 0.0022 24.3 5.7 50 63-113 9-60 (116)
6 2wj8_A Nucleoprotein; RNA bind 21.7 55 0.0019 29.7 3.0 44 82-127 270-327 (391)
7 1fme_A FSD-EY peptide; beta-BE 19.5 79 0.0027 18.3 2.3 21 82-102 6-26 (28)
8 2d8m_A DNA-repair protein XRCC 19.0 2.8E+02 0.0097 20.4 7.6 62 82-145 29-97 (129)
9 1rpq_W Peptide E131; receptor- 18.5 29 0.001 19.9 0.3 14 116-129 2-15 (26)
10 1f9y_A HPPK, protein (6-hydrox 16.8 1.9E+02 0.0066 23.0 4.9 40 63-102 37-77 (158)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=2e-51 Score=343.39 Aligned_cols=132 Identities=29% Similarity=0.497 Sum_probs=124.0
Q ss_pred cceEEEEEEeCCCCcc-h--hhhcce---eeeeeceEEcCeEEeecCcCCCCCCeEeecCCCCCCCceEEEEEccceeCC
Q 027959 17 ETQVVLNVYDLTPVNS-Y--TYWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMP 90 (216)
Q Consensus 17 ~~~V~LnVYDLs~~n~-~--~~~lG~---Gi~HTgVeV~G~EY~FG~~~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~~~ 90 (216)
+.+|+||||||+++++ . ..|||. |||||||||||+||+||+ +||+++.|+.++.++||++|.||.|.++
T Consensus 6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~ 80 (168)
T 2wp7_A 6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT 80 (168)
T ss_dssp CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence 4899999999999854 2 358997 999999999999999996 5999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC-CCCCcccccccccchHHHHHHHHhcCCCCChHHHHHhh------hhhhcccCCcc
Q 027959 91 PSEFRTFIECSASE-YHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR------LGALCGCLLPE 153 (216)
Q Consensus 91 ~~e~~~~l~~L~~~-f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~IP~wInRla~------~g~~~~cllP~ 153 (216)
+++|++||++|+++ |++++||||+|||||||+++|++|+||+||+||||||+ +|.++.|+|+.
T Consensus 81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~ 150 (168)
T 2wp7_A 81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDS 150 (168)
T ss_dssp HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999998 79998998865
No 2
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=92.59 E-value=0.054 Score=43.52 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=15.9
Q ss_pred CcccccccccchHHHHHH
Q 027959 108 DTYNLISKNCNHFTDDIA 125 (216)
Q Consensus 108 ~tY~Ll~~NCNHFs~~l~ 125 (216)
..|+||.+||-||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELR 121 (140)
T ss_dssp CSSCCCHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHh
Confidence 689999999999998754
No 3
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=92.30 E-value=0.046 Score=41.98 Aligned_cols=16 Identities=38% Similarity=1.092 Sum_probs=14.0
Q ss_pred cccccccccchHHHHH
Q 027959 109 TYNLISKNCNHFTDDI 124 (216)
Q Consensus 109 tY~Ll~~NCNHFs~~l 124 (216)
.|||+.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 6999999999998653
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=92.21 E-value=0.045 Score=43.79 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=10.7
Q ss_pred CcccccccccchHHHHHH
Q 027959 108 DTYNLISKNCNHFTDDIA 125 (216)
Q Consensus 108 ~tY~Ll~~NCNHFs~~l~ 125 (216)
..|+|+.+||-||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp EC-----CHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHh
Confidence 489999999999998764
No 5
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=38.77 E-value=65 Score=24.32 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=37.2
Q ss_pred CCeEeecCCC-CCCCceEEEEEccceeCCHHHHHHHHHHhh-cCCCCCccccc
Q 027959 63 SGVFEVEPRS-CPGFIYRASILLGRINMPPSEFRTFIECSA-SEYHGDTYNLI 113 (216)
Q Consensus 63 sGI~~~~P~~-~pg~~~r~sI~LG~T~~~~~e~~~~l~~L~-~~f~g~tY~Ll 113 (216)
.|+.++-|+. +++..|+ +|.+...+...+.|.+.|++.. +.-..+.|-|.
T Consensus 9 ~g~lkIYg~~L~~~~~Yk-svlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lv 60 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYK-TILLSTTDTADFAVAESLEKYGLEKENPKDYCIA 60 (116)
T ss_dssp CCEEEECCTTTCSSSCCE-EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEE
T ss_pred CeEEEEeCCcccCCCceE-EEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEE
Confidence 4778888876 4666665 7999999999999999999875 33445556554
No 6
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=21.73 E-value=55 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=28.5
Q ss_pred EEccceeCCH-----HHHHHHHHHhhcCCCCCcccccc---------cccchHHHHHHHH
Q 027959 82 ILLGRINMPP-----SEFRTFIECSASEYHGDTYNLIS---------KNCNHFTDDIAWR 127 (216)
Q Consensus 82 I~LG~T~~~~-----~e~~~~l~~L~~~f~g~tY~Ll~---------~NCNHFs~~l~~~ 127 (216)
|-||...+-. .|+.+++++|..+ ..-|||.. -||+||+.-+.--
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLGN 327 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLGN 327 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheecc
Confidence 5667665432 2566777788754 34466654 5999999877543
No 7
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=19.47 E-value=79 Score=18.33 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=17.1
Q ss_pred EEccceeCCHHHHHHHHHHhh
Q 027959 82 ILLGRINMPPSEFRTFIECSA 102 (216)
Q Consensus 82 I~LG~T~~~~~e~~~~l~~L~ 102 (216)
-.-|.|...+.|+++||+..+
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 345888889999999998754
No 8
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.04 E-value=2.8e+02 Score=20.40 Aligned_cols=62 Identities=29% Similarity=0.297 Sum_probs=35.6
Q ss_pred EEccceeCCHHHHHHHHHHhhcCCCC----CcccccccccchHHHHHHHHh-cCCCC--ChHHHHHhhhhh
Q 027959 82 ILLGRINMPPSEFRTFIECSASEYHG----DTYNLISKNCNHFTDDIAWRL-TGKHI--PGWVNRLARLGA 145 (216)
Q Consensus 82 I~LG~T~~~~~e~~~~l~~L~~~f~g----~tY~Ll~~NCNHFs~~l~~~L-~Gk~I--P~wInRla~~g~ 145 (216)
+.-|.+..++.++..+|+.+...|.. .+=||+..+-+ +..+.+++ .|-+| |.||....+.+.
T Consensus 29 ~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~--~~K~~~A~~~gi~IV~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 29 VLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFAN--TPKYSQVLGLGGRIVRKEWVLDCHRMRR 97 (129)
T ss_dssp EEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSS--CHHHHHHHHHTCEEEETHHHHHHHHTTS
T ss_pred EEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCC--ChHHHHHHHCCCcEecHHHHHHHHHhCC
Confidence 34577767789999999999765543 33344433221 12222222 24444 788888776554
No 9
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=18.50 E-value=29 Score=19.86 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=9.8
Q ss_pred ccchHHHHHHHHhc
Q 027959 116 NCNHFTDDIAWRLT 129 (216)
Q Consensus 116 NCNHFs~~l~~~L~ 129 (216)
.|.||+-++--.|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999887654443
No 10
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=16.76 E-value=1.9e+02 Score=22.98 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.1
Q ss_pred CCeEeecCCCC-CCCceEEEEEccceeCCHHHHHHHHHHhh
Q 027959 63 SGVFEVEPRSC-PGFIYRASILLGRINMPPSEFRTFIECSA 102 (216)
Q Consensus 63 sGI~~~~P~~~-pg~~~r~sI~LG~T~~~~~e~~~~l~~L~ 102 (216)
|.+++++|-.. ....|--.+....|.+++.++.+.+.++.
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE 77 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIE 77 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHH
Confidence 56888887433 23457677888899999999999887764
Done!