Query 027959
Match_columns 216
No_of_seqs 180 out of 470
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 05:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027959.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027959hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fhfa1 b.1.18.2 (A:288-402) P 25.5 25 0.0018 24.2 3.2 42 15-56 26-73 (115)
2 d1nh2c_ b.56.1.1 (C:) Large ch 24.0 19 0.0014 23.2 2.1 42 12-57 8-51 (59)
3 d1g5ta_ c.37.1.11 (A:) ATP:cor 23.5 23 0.0016 26.5 2.7 20 128-147 132-151 (157)
4 d1wxaa1 d.15.1.5 (A:8-110) Afa 22.6 72 0.0052 21.3 5.2 50 64-114 3-54 (103)
5 d1vlpa1 d.41.2.2 (A:1-149) Nic 19.1 9.4 0.00069 28.5 -0.4 42 92-133 51-93 (149)
6 d1jhsa_ d.107.1.1 (A:) Ran-bin 14.7 19 0.0014 27.7 0.4 26 143-168 9-35 (188)
7 d1bf2a1 b.1.18.2 (A:1-162) Iso 14.4 65 0.0047 23.2 3.4 33 15-47 25-62 (162)
8 d1cbka_ d.58.30.1 (A:) 6-hydro 13.4 1.3E+02 0.0095 21.9 5.0 43 63-105 38-81 (160)
9 d1zgka1 b.68.11.1 (A:322-609) 12.9 79 0.0057 22.9 3.6 38 21-58 20-59 (288)
10 d1f9ya_ d.58.30.1 (A:) 6-hydro 12.6 1.4E+02 0.01 21.6 5.0 40 63-102 37-77 (158)
No 1
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=25.50 E-value=25 Score=24.15 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCcceEEEEEEeCCCCcch---hhhcc-eeeeeeceE--EcCeEEeec
Q 027959 15 INETQVVLNVYDLTPVNSY---TYWFG-FGIFHSGIE--VHGKEYGFG 56 (216)
Q Consensus 15 ~~~~~V~LnVYDLs~~n~~---~~~lG-~Gi~HTgVe--V~G~EY~FG 56 (216)
.+...|.|.|||=...... +..-+ -||||.-|. ..|..|.|-
T Consensus 26 P~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~Y~y~ 73 (115)
T d2fhfa1 26 PTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYA 73 (115)
T ss_dssp TTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCEEEEE
T ss_pred CCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCEEEEE
Confidence 3467899999986542211 11112 499999886 567777774
No 2
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.02 E-value=19 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCCCcceEEEEEEeCC-CC-cchhhhcceeeeeeceEEcCeEEeecC
Q 027959 12 HDGINETQVVLNVYDLT-PV-NSYTYWFGFGIFHSGIEVHGKEYGFGA 57 (216)
Q Consensus 12 ~~~~~~~~V~LnVYDLs-~~-n~~~~~lG~Gi~HTgVeV~G~EY~FG~ 57 (216)
+++.....|.|-.||=- +. |..--.|-.||-| |+|++|.|..
T Consensus 8 ~ed~~~~n~vlc~yDKV~R~KnKWK~~LKdGim~----ingkdy~F~k 51 (59)
T d1nh2c_ 8 EEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVT----INRNDYTFQK 51 (59)
T ss_dssp ------CCEEEEEEEEEEEETTEEEEEEEEEEEE----ETTEEEEEEE
T ss_pred ccCCCCCcEEEEEEEEEeeccceEEEEEeeeEEE----ECCeEEEEee
Confidence 33444567999999954 32 2333345678877 6999999975
No 3
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=23.52 E-value=23 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.8
Q ss_pred hcCCCCChHHHHHhhhhhhc
Q 027959 128 LTGKHIPGWVNRLARLGALC 147 (216)
Q Consensus 128 L~Gk~IP~wInRla~~g~~~ 147 (216)
|||+..|.++..+|.+-+..
T Consensus 132 lTGr~~p~~L~e~ADlVTEm 151 (157)
T d1g5ta_ 132 ITGRGCHRDILDLADTVSEL 151 (157)
T ss_dssp EECSSCCHHHHHHCSEEEEC
T ss_pred EECCCCCHHHHHhcceeeee
Confidence 78999999999999866543
No 4
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.59 E-value=72 Score=21.26 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=37.7
Q ss_pred CeEeecCCC-CCCCceEEEEEccceeCCHHHHHHHHHHhhcC-CCCCcccccc
Q 027959 64 GVFEVEPRS-CPGFIYRASILLGRINMPPSEFRTFIECSASE-YHGDTYNLIS 114 (216)
Q Consensus 64 GI~~~~P~~-~pg~~~r~sI~LG~T~~~~~e~~~~l~~L~~~-f~g~tY~Ll~ 114 (216)
|+.++-|+. .|+..|+ ++.+-.+....+.+...|+++.-. =.+..|-|+.
T Consensus 3 G~lkVy~~~l~~~~~yk-~l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~e 54 (103)
T d1wxaa1 3 GTLRIYADSLKPNIPYK-TILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 54 (103)
T ss_dssp CEEEECCTTTCSSSCCE-EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred cEEEEEcCccCCCCCeE-EEEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEE
Confidence 788887766 3565565 799999999999999999988733 3567787764
No 5
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.12 E-value=9.4 Score=28.51 Aligned_cols=42 Identities=0% Similarity=0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHhh-cCCCCCcccccccccchHHHHHHHHhcCCCC
Q 027959 92 SEFRTFIECSA-SEYHGDTYNLISKNCNHFTDDIAWRLTGKHI 133 (216)
Q Consensus 92 ~e~~~~l~~L~-~~f~g~tY~Ll~~NCNHFs~~l~~~L~Gk~I 133 (216)
..+++.|+.|+ -+|+.+..+-|+.+|++|..++..+|-+-+.
T Consensus 51 ~gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~rF 93 (149)
T d1vlpa1 51 NWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNY 93 (149)
T ss_dssp HHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 45777888886 6788889999999999999999999976443
No 6
>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.72 E-value=19 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=20.9
Q ss_pred hhhhcccCCccccc-ccCCcCCCCCCC
Q 027959 143 LGALCGCLLPESLQ-ATTVKQLPEYHD 168 (216)
Q Consensus 143 ~g~~~~cllP~~l~-~~~v~~~p~~~~ 168 (216)
+|-..+|.||..++ ++.+||.|+..|
T Consensus 9 fGGAI~~~lP~~f~DvS~~RqVPDnQE 35 (188)
T d1jhsa_ 9 YGGAITTVVPPGFIDASTLREVPDTQA 35 (188)
T ss_dssp GGGTEEEEECTTEEEGGGTSCCCTTEE
T ss_pred cCceEEEecCCCceeccccccCCCCcE
Confidence 46667889998765 678999999887
No 7
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}
Probab=14.36 E-value=65 Score=23.19 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=20.2
Q ss_pred CCcceEEEEEEeCCCCcc-h----hhhcceeeeeeceE
Q 027959 15 INETQVVLNVYDLTPVNS-Y----TYWFGFGIFHSGIE 47 (216)
Q Consensus 15 ~~~~~V~LnVYDLs~~n~-~----~~~lG~Gi~HTgVe 47 (216)
.+...|.|.+||=..... . +..-.-||||.-|.
T Consensus 25 p~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~ 62 (162)
T d1bf2a1 25 SQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVP 62 (162)
T ss_dssp SSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEec
Confidence 346789999998654321 1 11123599998764
No 8
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId: 727]}
Probab=13.44 E-value=1.3e+02 Score=21.91 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=31.6
Q ss_pred CCeEeecCCCCCC-CceEEEEEccceeCCHHHHHHHHHHhhcCC
Q 027959 63 SGVFEVEPRSCPG-FIYRASILLGRINMPPSEFRTFIECSASEY 105 (216)
Q Consensus 63 sGI~~~~P~~~pg-~~~r~sI~LG~T~~~~~e~~~~l~~L~~~f 105 (216)
|-+++++|-...+ -.|--.+....|.+++.++.+.+..+..++
T Consensus 38 S~~y~T~p~g~~~~p~FlN~vv~~~T~l~p~~Ll~~l~~IE~~~ 81 (160)
T d1cbka_ 38 SSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQ 81 (160)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHT
T ss_pred cCceEcccccccchhhhhheeEEEEeCCCHHHHHHHHHHHHHHh
Confidence 4677877754333 247677888999999999999888775443
No 9
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.88 E-value=79 Score=22.87 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=24.3
Q ss_pred EEEEEeCCCCc-chhhhcce-eeeeeceEEcCeEEeecCc
Q 027959 21 VLNVYDLTPVN-SYTYWFGF-GIFHSGIEVHGKEYGFGAH 58 (216)
Q Consensus 21 ~LnVYDLs~~n-~~~~~lG~-Gi~HTgVeV~G~EY~FG~~ 58 (216)
.+++||+.... ..+..+-. -..|+.+.+.|+-|.|||.
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~ 59 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCc
Confidence 37799998631 11111111 3368888899999999984
No 10
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Probab=12.60 E-value=1.4e+02 Score=21.61 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCeEeecCCCCCC-CceEEEEEccceeCCHHHHHHHHHHhh
Q 027959 63 SGVFEVEPRSCPG-FIYRASILLGRINMPPSEFRTFIECSA 102 (216)
Q Consensus 63 sGI~~~~P~~~pg-~~~r~sI~LG~T~~~~~e~~~~l~~L~ 102 (216)
|-+++++|-..+. -.|--.+.+..|.+++.++.+.+..+.
T Consensus 37 S~~y~T~p~g~~~qp~F~N~v~~~~T~l~p~~ll~~l~~IE 77 (158)
T d1f9ya_ 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIE 77 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred ecceecccccccccchHhhhhhhhhhccCHHHHHHHHHHHH
Confidence 4678887754332 357778889999999999998887765
Done!