BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027960
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 162 bits (411), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 4/185 (2%)
Query: 33 ENFLKCLSLQ-SDTIS--KVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVS 89
ENFLKC S + ++ K++YTQ++ IQNL F + T KPL I+TP + S
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 90 EIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQS 149
IQA I CSKK GLQIR RSGGHD EG+S IS VPF++VDL N I ID ++TAWV++
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 150 GATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMI 209
GAT+G++ Y I EK++N L+F AL+R YG+AAD+I+DAH++
Sbjct: 125 GATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 210 DAKGE 214
+ G+
Sbjct: 184 NVDGK 188
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 5/189 (2%)
Query: 28 APENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFH 87
A + +FL CL+ D + +Y +++ ++N+ F + KPL+IITP +
Sbjct: 6 AKQVERDFLTCLT--KDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTN 63
Query: 88 VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV--PFIIVDLINFSEISIDAEAKTA 145
S IQAA+ C ++ G++IRVRSGGHD EGLS S+ PF +VD+ +SID +A TA
Sbjct: 64 ASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATA 123
Query: 146 WVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVD 205
WV SGA +G L Y IA+ S L F LLRKYG AAD+++D
Sbjct: 124 WVDSGAQLGDLYYGIAKASPK-LGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVID 182
Query: 206 AHMIDAKGE 214
A ++DA+G
Sbjct: 183 AKVVDAQGR 191
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 5/188 (2%)
Query: 29 PENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHV 88
P E+FL CL + +++Y +++ I+N +S+P N KPL+IITP V
Sbjct: 5 PAAKEDFLGCLV--KEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQV 62
Query: 89 SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVP--FIIVDLINFSEISIDAEAKTAW 146
S IQ+A+ C ++ ++IRVRSGGHD EGLS S P F +VDL + +D +A+TAW
Sbjct: 63 SHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAW 122
Query: 147 VQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDA 206
V SGA +G+L Y I + S LAF LLRKYG+AA++++D
Sbjct: 123 VDSGAQLGELYYAIYKASPT-LAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDV 181
Query: 207 HMIDAKGE 214
++DA G+
Sbjct: 182 KLVDANGK 189
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Query: 34 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVSEIQA 93
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 94 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATV 153
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 154 GQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMIDAKG 213
G+L Y I E S L F + RKYG+AAD++VDA +IDA G
Sbjct: 121 GELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Query: 34 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVSEIQA 93
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 94 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATV 153
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 154 GQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMIDAKG 213
G+L Y I E S L F + RKYG+AAD++VDA +IDA G
Sbjct: 121 GELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 1/184 (0%)
Query: 30 ENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVS 89
E + L CL+ V ++ IQN +F KP II P
Sbjct: 22 EAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 81
Query: 90 EIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQS 149
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+S
Sbjct: 82 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 141
Query: 150 GATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMI 209
G+T+G+L Y I E S L F + RKYG+AAD++VDA +I
Sbjct: 142 GSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 200
Query: 210 DAKG 213
DA G
Sbjct: 201 DANG 204
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 1/184 (0%)
Query: 30 ENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVS 89
E + L CL+ V ++ IQN +F KP II P
Sbjct: 3 EAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 62
Query: 90 EIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQS 149
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+S
Sbjct: 63 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 122
Query: 150 GATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMI 209
G+T+G+L Y I E S L F + RKYG+AAD++VDA +I
Sbjct: 123 GSTLGELYYAITESSSK-LGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 210 DAKG 213
DA G
Sbjct: 182 DANG 185
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 1/184 (0%)
Query: 30 ENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVS 89
E + L CL+ V ++ IQN +F KP II P
Sbjct: 3 EAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKE 62
Query: 90 EIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQS 149
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+S
Sbjct: 63 ELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVES 122
Query: 150 GATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMI 209
G+T+G+L Y I E S L F + RKYG+AAD++VDA +I
Sbjct: 123 GSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 210 DAKG 213
DA G
Sbjct: 182 DANG 185
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Query: 34 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVSEIQA 93
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 94 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATV 153
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +SID E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 154 GQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMIDAKG 213
G+L Y I E S L F + RKYG+AAD++VDA +IDA G
Sbjct: 121 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 1/180 (0%)
Query: 34 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVSEIQA 93
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 4 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 63
Query: 94 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATV 153
I+C +K IR+RSGG EGLS SD PFI++DL+N + +SID E++TAWV+SG+T+
Sbjct: 64 TIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 123
Query: 154 GQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMIDAKG 213
G+L Y I E S L F + RKYG+AAD++VDA +IDA G
Sbjct: 124 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 182
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI 136
Q+P I ++ +++ + +GL+I VRSGGH+ G + ++ I++DL + I
Sbjct: 37 QRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA--TNDGGIVLDLRLMNSI 94
Query: 137 SIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKY 196
ID A + G G L + E ++ LA L KY
Sbjct: 95 HIDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 197 GVAADHIVDAHMIDAKGE 214
G+A+D+I+ A ++ A G+
Sbjct: 152 GLASDNILGATLVTATGD 169
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 89 SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQ 148
+EI+ + + +SG ++ VRSGGH E + SDV +++D+ S + D E V+
Sbjct: 69 AEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVVMDMSRLSAVGFDEERGAFAVE 127
Query: 149 SGATVGQL 156
+GAT+G +
Sbjct: 128 AGATLGAV 135
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 88 VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE-ISIDAEAKTAW 146
+ IQ+A++C+KK L++ +SGGH + ++V L + IS + + A
Sbjct: 46 TAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAH 105
Query: 147 VQSGATVGQL 156
V+ GA +G L
Sbjct: 106 VEPGARLGHL 115
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE 135
N +P +I ++ A++ + ++G ++ VRSGGH E DV +I+D+ +E
Sbjct: 55 NGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTE 113
Query: 136 ISIDAEAKTAWVQSGATVGQL 156
I+ D ++ G T+ ++
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEV 134
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 67 QNLV---FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV 123
Q+LV F+ +P + ++ A+ + +G +I VRSGGH EG D
Sbjct: 41 QDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF---VDD 97
Query: 124 PFI--IVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXX 181
P + ++D+ ++ D+ + V+ GAT+G+ YR +
Sbjct: 98 PAVRAVIDMSQMRQVFYDSGKRAFAVEPGATLGE-TYRALYLDWG-VTIPAGVCPQVGVG 155
Query: 182 XXXXXXXXXALLRKYGVAADHI--VDAHMIDAKGE 214
L R+ GV ADH+ V+ ++DA G
Sbjct: 156 GHVLGGGYGPLSRRDGVVADHLYAVEVVVVDASGR 190
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 66 IQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF 125
+ F+ + P I P +I AA++C +G+QI + GGH +
Sbjct: 30 MDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGH 89
Query: 126 IIVDLINFSEISIDAEAKTAWVQSGATVG 154
++++L +S+D + A +Q GA +G
Sbjct: 90 LMLELDRMYRVSVD-DNNVATIQGGARLG 117
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 66 IQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF 125
+ F+ + P I P +I AA++C +G+QI + GGH +
Sbjct: 30 MDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGH 89
Query: 126 IIVDLINFSEISIDAEAKTAWVQSGATVG 154
++++L +S+D + A +Q GA +G
Sbjct: 90 LMLELDRMYRVSVD-DNNVATIQGGARLG 117
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGH---DLEGLSSISDVPFIIVDLINFS 134
+P P ++ A+++ + G + RSGGH D G +++DL N
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLH 89
Query: 135 EISIDAEAKTAWVQSGATVGQLN 157
I A+ V SGATV Q+
Sbjct: 90 AIGPAADGAGVRVGSGATVDQVQ 112
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF--IIVDLINFSEI 136
P +T V ++Q +K + + I S G + G S + V +I+DL ++I
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 116
Query: 137 -SIDAEAKTAWVQSGATVGQLNYRIAEKS 164
ID E A V+ G T GQ+ I E +
Sbjct: 117 IKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF--IIVDLINFSEI 136
P +T V ++Q +K + + I S G + G S + V +I+DL ++I
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 115
Query: 137 -SIDAEAKTAWVQSGATVGQLNYRIAEKS 164
ID E A V+ G T GQ+ I E +
Sbjct: 116 IKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 109 SGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEK 163
S G E + ++ +VP +I+D I AE T+WV+ L YR+ E+
Sbjct: 201 SNGSVKEEIDAVKNVPVLILD-------DIGAEQATSWVRDEVLQVILQYRMLEE 248
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 83 ITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSI--SDVPFIIVD 129
ITP + I+ S+K+GL+I V GG D+ I SDV +I +D
Sbjct: 176 ITPAQMRR-PGIIEASRKAGLEIMVYYGGDDMAVHREIATSDVDYINLD 223
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 78 KPLFIITPFHVSEIQAAIKCSKKSG-LQIRVRSGGHDLEG 116
KPL ++ P +I A+K + +S L + R GH + G
Sbjct: 61 KPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSING 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,753,100
Number of Sequences: 62578
Number of extensions: 138685
Number of successful extensions: 280
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 23
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)