Query 027960
Match_columns 216
No_of_seqs 261 out of 1867
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01565 FAD_binding_4: FAD bi 100.0 4E-31 8.7E-36 203.6 13.6 135 79-216 1-136 (139)
2 PLN02805 D-lactate dehydrogena 100.0 3.5E-28 7.7E-33 224.6 15.5 136 77-216 132-268 (555)
3 PRK11230 glycolate oxidase sub 99.9 3.5E-27 7.6E-32 216.2 16.2 138 75-216 52-192 (499)
4 TIGR01678 FAD_lactone_ox sugar 99.9 3E-27 6.5E-32 213.5 15.1 139 71-216 7-147 (438)
5 PLN02441 cytokinin dehydrogena 99.9 1.4E-26 3E-31 211.8 16.9 152 54-216 46-207 (525)
6 COG0277 GlcD FAD/FMN-containin 99.9 5.4E-27 1.2E-31 212.3 13.7 137 75-216 28-167 (459)
7 TIGR01676 GLDHase galactonolac 99.9 7E-27 1.5E-31 213.8 14.3 140 70-216 53-194 (541)
8 TIGR00387 glcD glycolate oxida 99.9 3.9E-26 8.4E-31 205.3 12.3 131 82-216 1-134 (413)
9 TIGR01677 pln_FAD_oxido plant- 99.9 1.6E-25 3.4E-30 206.8 15.3 140 71-213 24-168 (557)
10 TIGR01679 bact_FAD_ox FAD-link 99.9 2.2E-25 4.7E-30 200.7 13.2 137 71-216 4-141 (419)
11 PLN02465 L-galactono-1,4-lacto 99.9 6.7E-24 1.4E-28 195.6 15.1 140 70-216 88-229 (573)
12 PRK11282 glcE glycolate oxidas 99.9 2.2E-23 4.8E-28 183.1 13.3 125 87-216 3-130 (352)
13 PRK11183 D-lactate dehydrogena 99.9 3.3E-22 7.2E-27 181.6 12.5 135 76-215 36-178 (564)
14 KOG1231 Proteins containing th 99.9 1.6E-21 3.5E-26 171.5 15.7 143 71-216 56-204 (505)
15 PRK13905 murB UDP-N-acetylenol 99.9 5E-21 1.1E-25 165.4 12.1 130 77-216 29-159 (298)
16 PRK13906 murB UDP-N-acetylenol 99.8 1.2E-20 2.7E-25 163.3 12.5 130 77-216 35-164 (307)
17 TIGR00179 murB UDP-N-acetyleno 99.8 2.4E-20 5.1E-25 160.1 12.4 130 77-216 11-141 (284)
18 PRK12436 UDP-N-acetylenolpyruv 99.8 1.7E-20 3.7E-25 162.3 11.4 131 76-216 34-164 (305)
19 PRK13903 murB UDP-N-acetylenol 99.8 6.6E-19 1.4E-23 155.2 13.1 132 76-216 30-162 (363)
20 PRK14649 UDP-N-acetylenolpyruv 99.8 7.7E-19 1.7E-23 151.4 12.3 131 77-215 19-150 (295)
21 KOG1232 Proteins containing th 99.8 2E-19 4.4E-24 155.4 6.2 149 66-216 77-226 (511)
22 PRK14652 UDP-N-acetylenolpyruv 99.8 2.8E-18 6.1E-23 148.3 13.2 129 76-214 33-162 (302)
23 KOG4730 D-arabinono-1, 4-lacto 99.8 3.9E-19 8.4E-24 156.6 7.8 139 71-215 42-182 (518)
24 KOG1233 Alkyl-dihydroxyacetone 99.7 1.2E-17 2.5E-22 145.1 11.1 144 71-215 153-300 (613)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 9.7E-17 2.1E-21 138.2 11.7 126 78-215 33-158 (297)
26 PRK14650 UDP-N-acetylenolpyruv 99.6 9.5E-16 2.1E-20 132.0 10.7 128 78-215 32-160 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.6 1.5E-15 3.3E-20 129.3 11.6 131 77-215 19-149 (291)
28 PRK00046 murB UDP-N-acetylenol 99.6 1.7E-15 3.6E-20 132.2 10.5 128 78-215 20-151 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.6 5.5E-15 1.2E-19 129.2 11.4 125 78-210 29-156 (354)
30 PRK14651 UDP-N-acetylenolpyruv 99.4 4.8E-12 1E-16 107.7 10.0 115 80-215 22-137 (273)
31 PRK13904 murB UDP-N-acetylenol 99.1 8.4E-10 1.8E-14 93.2 9.2 111 78-210 18-128 (257)
32 KOG1262 FAD-binding protein DI 99.0 1.9E-10 4.2E-15 100.5 3.1 87 128-216 106-193 (543)
33 PF00941 FAD_binding_5: FAD bi 96.9 0.0017 3.6E-08 51.8 5.3 105 79-189 2-117 (171)
34 PRK09799 putative oxidoreducta 96.7 0.0067 1.4E-07 51.5 7.5 101 81-188 4-111 (258)
35 TIGR03312 Se_sel_red_FAD proba 96.2 0.02 4.4E-07 48.6 7.4 100 82-188 4-110 (257)
36 PRK09971 xanthine dehydrogenas 96.2 0.012 2.5E-07 50.9 6.0 74 81-158 6-82 (291)
37 TIGR02963 xanthine_xdhA xanthi 95.8 0.029 6.3E-07 51.7 7.2 106 79-188 192-304 (467)
38 TIGR03195 4hydrxCoA_B 4-hydrox 94.9 0.049 1.1E-06 47.8 5.2 75 80-158 5-81 (321)
39 TIGR03199 pucC xanthine dehydr 94.3 0.062 1.3E-06 45.7 4.4 70 85-158 1-73 (264)
40 PLN02906 xanthine dehydrogenas 93.1 0.17 3.6E-06 52.4 5.8 79 80-162 229-309 (1319)
41 PLN00192 aldehyde oxidase 92.8 0.33 7.2E-06 50.3 7.3 84 79-163 233-317 (1344)
42 TIGR02969 mam_aldehyde_ox alde 91.6 0.47 1E-05 49.2 6.8 78 80-161 237-316 (1330)
43 COG1319 CoxM Aerobic-type carb 88.0 1.9 4.2E-05 37.2 6.7 75 79-157 3-80 (284)
44 COG4630 XdhA Xanthine dehydrog 77.8 6.6 0.00014 35.3 5.9 80 80-163 204-285 (493)
45 COG0351 ThiD Hydroxymethylpyri 66.3 37 0.0008 29.0 7.7 92 47-165 132-226 (263)
46 cd07033 TPP_PYR_DXS_TK_like Py 66.0 11 0.00023 29.2 4.2 31 78-108 122-153 (156)
47 KOG3282 Uncharacterized conser 62.3 12 0.00026 30.1 3.8 36 70-107 118-153 (190)
48 PF02779 Transket_pyr: Transke 61.2 15 0.00032 29.1 4.2 33 78-110 136-171 (178)
49 COG4981 Enoyl reductase domain 60.6 35 0.00077 32.3 7.0 66 47-117 125-197 (717)
50 cd02429 PTH2_like Peptidyl-tRN 59.8 19 0.00041 26.8 4.3 31 78-108 55-85 (116)
51 COG4359 Uncharacterized conser 58.7 12 0.00026 30.5 3.2 24 91-114 78-101 (220)
52 PF02601 Exonuc_VII_L: Exonucl 58.6 16 0.00036 31.6 4.5 58 49-113 19-88 (319)
53 PRK04322 peptidyl-tRNA hydrola 52.4 26 0.00056 25.9 4.0 37 76-112 45-82 (113)
54 cd07036 TPP_PYR_E1-PDHc-beta_l 49.6 31 0.00067 27.2 4.3 31 78-108 133-164 (167)
55 PRK00286 xseA exodeoxyribonucl 47.0 24 0.00052 32.1 3.7 57 49-112 140-204 (438)
56 cd02407 PTH2_family Peptidyl-t 46.6 40 0.00087 24.9 4.2 37 76-112 47-84 (115)
57 PF04472 DUF552: Protein of un 45.7 31 0.00068 23.1 3.3 33 81-135 2-34 (73)
58 PF01981 PTH2: Peptidyl-tRNA h 44.6 63 0.0014 23.7 5.1 37 77-113 49-86 (116)
59 cd02742 GH20_hexosaminidase Be 44.0 24 0.00053 30.4 3.2 28 86-113 69-98 (303)
60 PLN02683 pyruvate dehydrogenas 43.4 2.1E+02 0.0046 25.4 9.1 31 78-108 163-194 (356)
61 TIGR00177 molyb_syn molybdenum 42.6 77 0.0017 24.0 5.5 39 78-117 43-81 (144)
62 cd06568 GH20_SpHex_like A subg 42.0 27 0.00058 30.7 3.2 23 86-108 72-94 (329)
63 PF10740 DUF2529: Protein of u 41.2 83 0.0018 25.1 5.5 111 33-146 25-150 (172)
64 PF00728 Glyco_hydro_20: Glyco 40.7 24 0.00052 30.7 2.7 29 85-113 69-99 (351)
65 cd06565 GH20_GcnA-like Glycosy 40.6 29 0.00063 30.0 3.1 24 85-108 56-79 (301)
66 smart00861 Transket_pyr Transk 40.6 50 0.0011 25.5 4.3 31 78-108 131-163 (168)
67 cd00886 MogA_MoaB MogA_MoaB fa 40.6 75 0.0016 24.3 5.2 41 79-119 37-78 (152)
68 COG1519 KdtA 3-deoxy-D-manno-o 40.4 1E+02 0.0022 28.2 6.5 34 78-111 260-293 (419)
69 cd06602 GH31_MGAM_SI_GAA This 39.6 1.1E+02 0.0024 26.9 6.7 22 86-107 21-42 (339)
70 TIGR00283 arch_pth2 peptidyl-t 39.5 75 0.0016 23.5 4.8 37 76-112 47-84 (115)
71 cd06589 GH31 The enzymes of gl 39.2 1.2E+02 0.0027 25.4 6.7 23 85-107 20-42 (265)
72 cd06570 GH20_chitobiase-like_1 39.0 33 0.00071 30.0 3.2 28 86-113 65-94 (311)
73 cd02430 PTH2 Peptidyl-tRNA hyd 38.5 61 0.0013 24.0 4.1 32 77-108 48-79 (115)
74 cd06563 GH20_chitobiase-like T 38.0 33 0.00072 30.4 3.2 27 87-113 84-112 (357)
75 PRK09212 pyruvate dehydrogenas 37.9 2.7E+02 0.0059 24.3 8.8 32 78-109 140-172 (327)
76 cd06562 GH20_HexA_HexB-like Be 37.6 35 0.00075 30.2 3.2 27 87-113 68-96 (348)
77 TIGR00789 flhB_rel flhB C-term 36.5 1E+02 0.0022 21.4 4.7 36 70-106 9-44 (82)
78 COG1154 Dxs Deoxyxylulose-5-ph 36.5 50 0.0011 31.6 4.1 34 76-109 438-473 (627)
79 cd06595 GH31_xylosidase_XylS-l 35.8 1.4E+02 0.003 25.6 6.6 20 86-105 22-41 (292)
80 KOG4656 Copper chaperone for s 35.2 60 0.0013 26.9 3.9 33 133-165 34-66 (247)
81 cd05014 SIS_Kpsf KpsF-like pro 35.2 67 0.0014 23.2 4.0 32 82-113 54-85 (128)
82 cd06564 GH20_DspB_LnbB-like Gl 34.9 35 0.00077 29.7 2.8 27 87-113 80-108 (326)
83 TIGR00178 monomer_idh isocitra 34.8 2.3E+02 0.005 27.4 8.0 123 85-216 308-445 (741)
84 KOG2499 Beta-N-acetylhexosamin 34.1 38 0.00082 31.6 2.8 32 79-113 243-276 (542)
85 PF07317 YcgR: Flagellar regul 33.6 1.4E+02 0.0031 21.5 5.4 60 85-161 4-64 (108)
86 cd06569 GH20_Sm-chitobiase-lik 33.0 44 0.00096 30.7 3.2 27 87-113 95-123 (445)
87 PF05378 Hydant_A_N: Hydantoin 32.7 86 0.0019 24.8 4.5 35 81-115 126-160 (176)
88 TIGR00237 xseA exodeoxyribonuc 32.6 30 0.00065 31.6 2.0 58 49-113 134-200 (432)
89 cd06603 GH31_GANC_GANAB_alpha 32.6 1.1E+02 0.0023 26.9 5.4 23 86-108 21-43 (339)
90 TIGR02667 moaB_proteo molybden 31.5 1.4E+02 0.003 23.3 5.4 40 80-119 40-80 (163)
91 PF09286 Pro-kuma_activ: Pro-k 31.2 54 0.0012 24.8 2.9 45 50-107 36-80 (143)
92 PF01113 DapB_N: Dihydrodipico 30.6 88 0.0019 23.0 4.0 36 78-113 67-102 (124)
93 cd06601 GH31_lyase_GLase GLase 30.5 1.8E+02 0.0039 25.6 6.5 55 86-165 21-78 (332)
94 PF00994 MoCF_biosynth: Probab 30.3 1.7E+02 0.0038 21.8 5.7 38 78-116 33-70 (144)
95 PRK09417 mogA molybdenum cofac 30.1 1.1E+02 0.0024 24.7 4.8 41 80-120 43-84 (193)
96 CHL00144 odpB pyruvate dehydro 29.9 86 0.0019 27.5 4.4 32 77-108 139-171 (327)
97 PF15608 PELOTA_1: PELOTA RNA 29.6 72 0.0016 23.1 3.1 34 78-111 55-89 (100)
98 PRK06186 hypothetical protein; 29.6 47 0.001 27.8 2.5 27 86-112 66-92 (229)
99 KOG2862 Alanine-glyoxylate ami 29.3 2.1E+02 0.0044 25.5 6.4 117 47-172 17-149 (385)
100 PRK12315 1-deoxy-D-xylulose-5- 28.7 4.4E+02 0.0095 25.1 9.2 36 78-113 401-438 (581)
101 cd06592 GH31_glucosidase_KIAA1 28.4 1.5E+02 0.0031 25.6 5.5 23 83-105 24-46 (303)
102 smart00642 Aamy Alpha-amylase 28.1 70 0.0015 25.0 3.2 22 86-107 67-88 (166)
103 KOG0430 Xanthine dehydrogenase 27.4 1.7E+02 0.0038 30.3 6.3 78 81-163 216-294 (1257)
104 cd06600 GH31_MGAM-like This fa 27.2 1.6E+02 0.0034 25.6 5.5 22 86-107 21-42 (317)
105 PF00403 HMA: Heavy-metal-asso 27.0 1.2E+02 0.0026 18.9 3.7 31 135-165 28-61 (62)
106 cd06604 GH31_glucosidase_II_Ma 27.0 1.7E+02 0.0037 25.6 5.8 22 86-107 21-42 (339)
107 PF13580 SIS_2: SIS domain; PD 26.9 59 0.0013 24.4 2.5 28 86-113 19-46 (138)
108 PTZ00182 3-methyl-2-oxobutanat 26.8 1E+02 0.0022 27.4 4.3 31 78-108 171-202 (355)
109 COG2144 Selenophosphate synthe 26.7 1.6E+02 0.0034 25.8 5.2 32 78-109 257-289 (324)
110 PRK02539 hypothetical protein; 26.2 38 0.00082 23.8 1.2 20 197-216 42-61 (85)
111 COG1058 CinA Predicted nucleot 25.9 1.2E+02 0.0026 25.8 4.4 36 78-114 37-72 (255)
112 cd06598 GH31_transferase_CtsZ 25.3 3.1E+02 0.0067 23.7 7.0 23 86-108 21-43 (317)
113 COG1570 XseA Exonuclease VII, 25.3 51 0.0011 30.3 2.1 57 50-113 141-206 (440)
114 PF03614 Flag1_repress: Repres 25.2 92 0.002 24.4 3.2 34 81-114 8-42 (165)
115 PF09673 TrbC_Ftype: Type-F co 25.2 95 0.0021 22.7 3.3 25 88-112 10-34 (113)
116 cd04795 SIS SIS domain. SIS (S 25.2 1.1E+02 0.0025 20.1 3.5 25 84-108 56-80 (87)
117 PRK13352 thiamine biosynthesis 25.2 97 0.0021 28.3 3.8 44 71-114 222-271 (431)
118 PF02844 GARS_N: Phosphoribosy 25.0 69 0.0015 23.2 2.4 24 87-110 47-70 (100)
119 cd00758 MoCF_BD MoCF_BD: molyb 24.5 1.8E+02 0.004 21.5 4.8 37 82-119 39-75 (133)
120 KOG0523 Transketolase [Carbohy 24.5 4.2E+02 0.0091 25.6 7.9 83 78-165 445-532 (632)
121 PRK01546 hypothetical protein; 24.2 42 0.00091 23.2 1.1 18 197-214 43-60 (79)
122 cd03062 TRX_Fd_Sucrase TRX-lik 24.0 1.1E+02 0.0024 21.7 3.3 30 76-105 51-89 (97)
123 smart00852 MoCF_biosynth Proba 23.3 2.5E+02 0.0055 20.6 5.4 36 80-116 36-71 (135)
124 COG1799 Uncharacterized protei 23.3 1.4E+02 0.0029 23.8 3.9 34 80-135 76-109 (167)
125 PF02775 TPP_enzyme_C: Thiamin 23.2 1.7E+02 0.0036 22.1 4.4 25 83-107 127-151 (153)
126 PRK05899 transketolase; Review 23.1 1.2E+02 0.0026 29.1 4.3 83 78-165 450-537 (624)
127 PF00543 P-II: Nitrogen regula 22.9 92 0.002 22.1 2.7 34 80-113 2-36 (102)
128 PF13986 DUF4224: Domain of un 22.8 1.1E+02 0.0024 18.8 2.7 20 93-112 19-38 (47)
129 COG3962 Acetolactate synthase 22.3 1.1E+02 0.0024 28.7 3.6 33 85-117 213-245 (617)
130 TIGR00190 thiC thiamine biosyn 22.2 1.2E+02 0.0026 27.7 3.8 40 75-114 223-268 (423)
131 cd06347 PBP1_ABC_ligand_bindin 22.0 2.4E+02 0.0052 23.6 5.7 50 51-109 173-222 (334)
132 PF00128 Alpha-amylase: Alpha 21.8 80 0.0017 26.1 2.6 22 86-107 49-70 (316)
133 cd06341 PBP1_ABC_ligand_bindin 21.2 2.3E+02 0.005 24.0 5.4 34 78-111 188-221 (341)
134 COG0710 AroD 3-dehydroquinate 20.9 1.6E+02 0.0035 24.6 4.2 37 77-113 148-187 (231)
135 KOG2862 Alanine-glyoxylate ami 20.8 1.4E+02 0.0031 26.5 3.9 35 142-178 317-351 (385)
136 cd03522 MoeA_like MoeA_like. T 20.7 2E+02 0.0043 25.1 4.9 40 80-119 197-236 (312)
137 cd06346 PBP1_ABC_ligand_bindin 20.1 1.9E+02 0.0041 24.4 4.6 52 50-110 173-224 (312)
138 PF03471 CorC_HlyC: Transporte 20.0 1.4E+02 0.003 20.1 3.1 38 141-186 4-41 (81)
No 1
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.97 E-value=4e-31 Score=203.58 Aligned_cols=135 Identities=35% Similarity=0.549 Sum_probs=121.6
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
|.+|++|++++||++++++|+++++|++++|+||++.+.+... ++++|||++|++| ++|+++++++|+||++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 8899999999999999999999999999999999998766533 5999999999995 999999999999999999999
Q ss_pred HHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 158 YRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
++|.++|+ .+.+.++.+...++||++++|++|..++.||...|+|+++++|++||+++
T Consensus 79 ~~l~~~g~-~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~ 136 (139)
T PF01565_consen 79 EALAPRGL-MLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVV 136 (139)
T ss_dssp HHHHHHTE-EESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEE
T ss_pred cccccccc-cccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEE
Confidence 99999964 22233567778899999999999999999999999999999999999974
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.96 E-value=3.5e-28 Score=224.59 Aligned_cols=136 Identities=21% Similarity=0.353 Sum_probs=126.8
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~ 155 (216)
..|.+|++|++++||+++|++|+++++|++++||||++.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999988876553 5899999999999 8999999999999999999
Q ss_pred HHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 156 LNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
|+++|.++| +.+|...++.+++||+++++++|..+.+||.++|+|+++|+|++||+++
T Consensus 211 L~~~L~~~G---l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv 268 (555)
T PLN02805 211 LNEYLEPYG---LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVV 268 (555)
T ss_pred HHHHHHHcC---CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEE
Confidence 999999995 5777777778899999999999999999999999999999999999974
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=3.5e-27 Score=216.22 Aligned_cols=138 Identities=18% Similarity=0.354 Sum_probs=124.4
Q ss_pred CCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcH
Q 027960 75 TNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATV 153 (216)
Q Consensus 75 ~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~ 153 (216)
....|.+|++|+|++||+++|++|+++++|+++||+||++.+.+.+.. ++++|||++||+| ++|+++.+++||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 356899999999999999999999999999999999999987766543 5899999999998 99999999999999999
Q ss_pred HHHHHHHHhhCCCceEecC--CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 154 GQLNYRIAEKSQNLLAFPV--GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 154 ~~l~~~l~~~g~~gl~~~~--g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
.+|+++|.++|+ .+++ ++....++||++++++.|..+.+||...|+|+++|||++||+++
T Consensus 131 ~~L~~~l~~~Gl---~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~ 192 (499)
T PRK11230 131 LAISQAAAPHGL---YYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEAL 192 (499)
T ss_pred HHHHHHHHHcCC---eeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEE
Confidence 999999999965 5443 34446899999999999999999999999999999999999974
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.95 E-value=3e-27 Score=213.52 Aligned_cols=139 Identities=22% Similarity=0.394 Sum_probs=127.7
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecC
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQS 149 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~a 149 (216)
|+.+....|.+|++|+|++||+++|++|+++++|++++|+|||+.+.... ++++|||++|++| ++|+++.+|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~---~gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT---DGFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC---CeEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 88888889999999999999999999999999999999999999876553 3899999999998 9999999999999
Q ss_pred CCcHHHHHHHHHhhCCCceEec-CCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 150 GATVGQLNYRIAEKSQNLLAFP-VGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 150 Gv~~~~l~~~l~~~g~~gl~~~-~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
|+++.+|.++|.++|+ .++ .|..+.+|+||++++|+||. +.+||..+|+|+++++|++||+++
T Consensus 84 G~~l~~L~~~L~~~Gl---~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~ 147 (438)
T TIGR01678 84 GIRLYQLHEQLDEHGY---SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVL 147 (438)
T ss_pred CCCHHHHHHHHHHcCC---EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEE
Confidence 9999999999999965 554 46778899999999999996 789999999999999999999974
No 5
>PLN02441 cytokinin dehydrogenase
Probab=99.95 E-value=1.4e-26 Score=211.84 Aligned_cols=152 Identities=19% Similarity=0.269 Sum_probs=131.6
Q ss_pred CCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCCCCCccCCCCeEEEEcc
Q 027960 54 NNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSK--KSGLQIRVRSGGHDLEGLSSISDVPFIIVDLI 131 (216)
Q Consensus 54 ~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~--~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~ 131 (216)
+...|+.+.. .|.......|.+|++|++++||+++|++|+ ++++++++||+|||+.|.+...+ |++|||+
T Consensus 46 d~~~~~~~s~------d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms 117 (525)
T PLN02441 46 DPVSTASASK------DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMR 117 (525)
T ss_pred CHHHHHHHhc------CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECC
Confidence 4445655432 477767789999999999999999999997 67999999999999998887654 9999999
Q ss_pred CCce------e-EEeCCCCeEEecCCCcHHHHHHHHHhhCCCceEecC-CCCccccchhccccCCCCccccccchHhhhe
Q 027960 132 NFSE------I-SIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPV-GTCPGVGVGGHFSGGGYGALLRKYGVAADHI 203 (216)
Q Consensus 132 ~~~~------i-~id~~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~-g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v 203 (216)
+||+ + ++|.+..+|+|++|++|.++++++.++|+ +.+. +....+++||+++++|+|..+.+||..+|+|
T Consensus 118 ~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gl---aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~V 194 (525)
T PLN02441 118 SLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGL---APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV 194 (525)
T ss_pred CCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCC---ccCCccccCceEEeEEcCCCCccccccccCcHHHhE
Confidence 9999 4 78889999999999999999999999954 4333 3345789999999999999999999999999
Q ss_pred eeEEEECCCCeeC
Q 027960 204 VDAHMIDAKGEKF 216 (216)
Q Consensus 204 ~~~~vV~~dG~iv 216 (216)
+++|||++||+++
T Consensus 195 l~leVVtadGevv 207 (525)
T PLN02441 195 LELDVVTGKGEVV 207 (525)
T ss_pred EEEEEEeCCceEE
Confidence 9999999999985
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.94 E-value=5.4e-27 Score=212.33 Aligned_cols=137 Identities=26% Similarity=0.420 Sum_probs=125.6
Q ss_pred CCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcH
Q 027960 75 TNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATV 153 (216)
Q Consensus 75 ~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~ 153 (216)
....|.+|+.|++++||++++++|+++++|+++||+||++.|.+.+. . +++|||++||+| ++|+++.+++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34688999999999999999999999999999999999999888766 2 899999999999 89999999999999999
Q ss_pred HHHHHHHHhhCCCceEecCCCC--ccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 154 GQLNYRIAEKSQNLLAFPVGTC--PGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 154 ~~l~~~l~~~g~~gl~~~~g~~--~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
.+|.++|.++|+ .+|..+. ..++|||+++++++|..+.+||.+.|+|+++++|++||+++
T Consensus 106 ~~l~~~l~~~G~---~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~ 167 (459)
T COG0277 106 EDLEKALAPHGL---FLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEIL 167 (459)
T ss_pred HHHHHHHHHcCC---ccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceeh
Confidence 999999999965 5554333 47999999999999999999999999999999999999975
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.94 E-value=7e-27 Score=213.85 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=127.8
Q ss_pred ccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEec
Q 027960 70 VFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQ 148 (216)
Q Consensus 70 ~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~ 148 (216)
+|+.+....|..+++|+|++||+++|+.|++++.+++++|+|||+.+.+... +.+|||++||+| ++|+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 3999989999999999999999999999999999999999999998877654 468999999998 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceEecC-CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 149 SGATVGQLNYRIAEKSQNLLAFPV-GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 149 aGv~~~~l~~~l~~~g~~gl~~~~-g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
||+++.+|.+.|.++|+ +++. |....+++||++++|+||. +.+||.++|+|+++++|++||+++
T Consensus 130 AG~~l~~L~~~L~~~Gl---al~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv 194 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGI---TLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTI 194 (541)
T ss_pred CCCCHHHHHHHHHHcCC---EeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEE
Confidence 99999999999999964 5543 6677899999999999997 457999999999999999999874
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.93 E-value=3.9e-26 Score=205.30 Aligned_cols=131 Identities=21% Similarity=0.330 Sum_probs=118.4
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHHH
Q 027960 82 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYRI 160 (216)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~l 160 (216)
|++|+|++||+++|++|+++++|++++|+|||+.|.+.+.+ ++++|||++||+| ++|+++.+++||||+++.+|+++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987766553 5899999999998 999999999999999999999999
Q ss_pred HhhCCCceEecC--CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 161 AEKSQNLLAFPV--GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 161 ~~~g~~gl~~~~--g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
.++|+ .++. ++....++||+++++++|..+.+||.++|+|++++||++||+++
T Consensus 80 ~~~gl---~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~ 134 (413)
T TIGR00387 80 EEHNL---FYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEIL 134 (413)
T ss_pred HHcCC---eeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEE
Confidence 99965 5543 33446889999999999999999999999999999999999874
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.93 E-value=1.6e-25 Score=206.80 Aligned_cols=140 Identities=20% Similarity=0.314 Sum_probs=123.9
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEc-CCCCCCCCCccCC-CCeEEEEccCCcee-EEeCCCCeEEe
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRS-GGHDLEGLSSISD-VPFIIVDLINFSEI-SIDAEAKTAWV 147 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~g-gGhs~~g~~~~~~-~~gvvIdl~~~~~i-~id~~~~~v~v 147 (216)
|+.+....|.+|++|+|++||+++|++|+++++|++++| +||++.+.+...+ +++++|||++||+| ++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 999999999999999999999999999999999999996 6999876554332 13699999999995 99999999999
Q ss_pred cCCCcHHHHHHHHHhhCCCceEecCC-CCccccchhccccCCCCccc-cccchHhhheeeEEEECCCC
Q 027960 148 QSGATVGQLNYRIAEKSQNLLAFPVG-TCPGVGVGGHFSGGGYGALL-RKYGVAADHIVDAHMIDAKG 213 (216)
Q Consensus 148 ~aGv~~~~l~~~l~~~g~~gl~~~~g-~~~~vgvgG~~~ggg~G~~s-~~~G~~~D~v~~~~vV~~dG 213 (216)
+||+++.+|.++|.++| +.++.+ ....++|||.+++|+||... ++||.++|+|+++++|++||
T Consensus 104 ~AG~~l~~L~~~L~~~G---lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G 168 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAG---LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPAS 168 (557)
T ss_pred CCCCcHHHHHHHHHHcC---CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCC
Confidence 99999999999999995 466654 34578999999999999765 58899999999999999998
No 10
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.93 E-value=2.2e-25 Score=200.68 Aligned_cols=137 Identities=20% Similarity=0.349 Sum_probs=120.8
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecC
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQS 149 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~a 149 (216)
|+......|.+|++|+|++||+++|+.|++ |++++|+|||+.+.+. . ++++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~--~g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-T--DGTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-C--CCEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 7999999999987654 2 3799999999998 9999999999999
Q ss_pred CCcHHHHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 150 GATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 150 Gv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
|+++.||.++|.++|+ .+... +....+++||.+++|+||. +..||..+|+|+++++|++||+++
T Consensus 78 G~~l~~l~~~L~~~G~-~l~~~-~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~ 141 (419)
T TIGR01679 78 GTRLGALGPQLAQRGL-GLENQ-GDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVL 141 (419)
T ss_pred CCCHHHHHHHHHHcCC-ccccC-CCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEE
Confidence 9999999999999965 33332 3445688999999999997 568999999999999999999974
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.91 E-value=6.7e-24 Score=195.64 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=125.3
Q ss_pred ccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEec
Q 027960 70 VFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQ 148 (216)
Q Consensus 70 ~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~ 148 (216)
+|+++....|..++.|+|++||+++|++|+++++|++++|+|||+.+....+ +.+|||++|++| ++|+++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4999999999999999999999999999999999999999999998776644 457899999998 999999999999
Q ss_pred CCCcHHHHHHHHHhhCCCceEecC-CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 149 SGATVGQLNYRIAEKSQNLLAFPV-GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 149 aGv~~~~l~~~l~~~g~~gl~~~~-g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
||+++.+|.+.|.++|+ .++. +.....+|||.+++|+||.. ..+|.++|+|+++++|+++|+++
T Consensus 165 AG~~l~~L~~~L~~~GL---al~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv 229 (573)
T PLN02465 165 AGARVQQVVEALRPHGL---TLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTI 229 (573)
T ss_pred cCCCHHHHHHHHHHcCC---EeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEE
Confidence 99999999999999965 5544 44457899999999999974 47899999999999999999764
No 12
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.90 E-value=2.2e-23 Score=183.12 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCCC-CCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHHHHhhC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVRSGGHD-LEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYRIAEKS 164 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~ggGhs-~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~l~~~g 164 (216)
.++||+++|++|+++++|++++|+||+ +.+.. . ++++|||++||+| ++|+++.+|+|+||+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~--~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--L--AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--C--CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 479999999999999999999999974 55542 2 2679999999999 9999999999999999999999999997
Q ss_pred CCceEecCC-CCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 165 QNLLAFPVG-TCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 165 ~~gl~~~~g-~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
+ .+.+.++ .+...++||++++|++|..+.+||..+|+|+++++|++||+++
T Consensus 79 ~-~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~ 130 (352)
T PRK11282 79 Q-MLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHL 130 (352)
T ss_pred C-eeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEE
Confidence 6 4444333 3346899999999999999999999999999999999999974
No 13
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.88 E-value=3.3e-22 Score=181.58 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=118.7
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCC----CeEEEEccCCcee-EEeCCCCeEEecCC
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV----PFIIVDLINFSEI-SIDAEAKTAWVQSG 150 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~----~gvvIdl~~~~~i-~id~~~~~v~v~aG 150 (216)
...|.+||+|.|++||+++|++|+++++|+++||||+++.|.+.+.+. ++|+|||++||+| ++| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988887532 3799999999999 888 5678999999
Q ss_pred CcHHHHHHHHHhhCCCceEecC--CCC-ccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 151 ATVGQLNYRIAEKSQNLLAFPV--GTC-PGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 151 v~~~~l~~~l~~~g~~gl~~~~--g~~-~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
+++.+|.++|+++|+ .++. |++ -..+|||.+++++.|....+||...++++. ++|++||++
T Consensus 115 Vtl~~LeeaLk~~Gl---~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel 178 (564)
T PRK11183 115 TTLYQLEKALKPLGR---EPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKL 178 (564)
T ss_pred CcHHHHHHHHHHhCC---CCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcE
Confidence 999999999999965 4443 222 135688999999999999999999999999 999999998
No 14
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=1.6e-21 Score=171.47 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=120.5
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCCCCCccCCCCeEEEEcc---CCcee-EEeCCCCe
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKS--GLQIRVRSGGHDLEGLSSISDVPFIIVDLI---NFSEI-SIDAEAKT 144 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~--~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~---~~~~i-~id~~~~~ 144 (216)
|.......|.+|+.|++++||++++|.|... ..|+.+||+|||..|++.... +|++|.|+ .|+++ .+..++..
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 3333467999999999999999999999998 899999999999999988743 48776654 46666 66777799
Q ss_pred EEecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 145 AWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 145 v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
+.|+||..|-|+.+++.++|++- .++.... ..+|||+++++|.|.+..+||...+||++++||+++|+|+
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p-~swtDyl-~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv 204 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSP-FSWTDYL-PLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIV 204 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCc-cCcCCcc-ceeecceeccCccccceeeccchhhceEEEEEEcCCCcEE
Confidence 99999999999999999995411 2222222 4999999999999999999999999999999999999985
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=5e-21 Score=165.38 Aligned_cols=130 Identities=23% Similarity=0.323 Sum_probs=106.5
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccC-CceeEEeCCCCeEEecCCCcHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~-~~~i~id~~~~~v~v~aGv~~~~ 155 (216)
..|.+++.|++++||++++++|+++++|+.++|+|||........ ++++|||++ |+.+++ ++.+++|+||++|.+
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~--~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~ 104 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGI--RGVVIRLGKGLNEIEV--EGNRITAGAGAPLIK 104 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCc--ceEEEEecCCcceEEe--cCCEEEEECCCcHHH
Confidence 478899999999999999999999999999999999965332222 389999998 998854 457899999999999
Q ss_pred HHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 156 LNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
|.+++.++|+.|+.+..+.++++|.+-.+++|+|| +.++|+|+++++|++||+++
T Consensus 105 L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~~G------~~~~d~v~~v~vv~~~G~~~ 159 (298)
T PRK13905 105 LARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGAYG------GETADVLESVEVLDRDGEIK 159 (298)
T ss_pred HHHHHHHcCCCcchhccCCCcchhHHHHHcCCcCc------eEhheeEEEEEEEeCCCCEE
Confidence 99999999987888888887754322223344444 47999999999999999874
No 16
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.2e-20 Score=163.29 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=110.4
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l 156 (216)
..+.++++|++++||++++++|+++++|+.++|+|||........ ++++|++++|++++++. .+++|+||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~--~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGI--RGIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCc--ceEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 367899999999999999999999999999999999975322222 38999998899998763 58999999999999
Q ss_pred HHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 157 NYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
.+++.++|+.|+.+..|.++++|.+..++.|+|| |.++|+|+++++|++||+++
T Consensus 111 ~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGayG------g~i~D~l~~v~vv~~~G~~~ 164 (307)
T PRK13906 111 SRVARDYALTGLEFACGIPGSIGGAVYMNAGAYG------GEVKDCIDYALCVNEQGSLI 164 (307)
T ss_pred HHHHHHcCCccchhhcCCCccHhHHHHhhCCcch------hhhhhheeEEEEEeCCCCEE
Confidence 9999999998888888887776655555666555 68999999999999999864
No 17
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=2.4e-20 Score=160.07 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=108.1
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l 156 (216)
..|.++++|+|++||++++++|+++++|+.++|+|||+...+... ++++|++++|+++.+++ +.+++|+||+.|.+|
T Consensus 11 g~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~--~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~l 87 (284)
T TIGR00179 11 GNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGR--GGVIINLGKGIDIEDDE-GEYVHVGGGENWHKL 87 (284)
T ss_pred ceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCc--CeEEEECCCCceEEEec-CCEEEEEcCCcHHHH
Confidence 468899999999999999999999999999999999976555433 48999999999887766 579999999999999
Q ss_pred HHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHh-hheeeEEEECCCCeeC
Q 027960 157 NYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAA-DHIVDAHMIDAKGEKF 216 (216)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~-D~v~~~~vV~~dG~iv 216 (216)
.+++.++|+.|+.+..|.++++ || +..++++.||... |+|+++++|++||+++
T Consensus 88 ~~~~~~~Gl~GlE~l~giPGtv--GG-----ai~mNAGayG~~i~d~l~~v~vv~~~G~~~ 141 (284)
T TIGR00179 88 VKYALKNGLSGLEFLAGIPGTV--GG-----AVIMNAGAYGVEISEVLVYATILLATGKTE 141 (284)
T ss_pred HHHHHHCCCcccccCCCCCchH--HH-----HHHHhcccchhehhheEEEEEEEeCCCCEE
Confidence 9999999998888877777643 33 3344445566665 5789999999999863
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.7e-20 Score=162.29 Aligned_cols=131 Identities=22% Similarity=0.280 Sum_probs=109.9
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHH
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~ 155 (216)
...|.++++|.+++||++++++|+++++|+.++|+|||+....... ++++|+|++|++++++ +.+++|+||+.|.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~--~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGI--RGITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCe--eEEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 3468999999999999999999999999999999999975322222 3899999889998776 46899999999999
Q ss_pred HHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 156 LNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
|.+++.++|+.|+.++.|.++++|.+..+++|++| +...|.+.+++++++||+++
T Consensus 110 L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGayG------~~~~dvl~~v~vv~~~G~v~ 164 (305)
T PRK12436 110 VSRIALDHNLTGLEFACGIPGSVGGALYMNAGAYG------GEISFVLTEAVVMTGDGELR 164 (305)
T ss_pred HHHHHHHcCCccchhhcCCccchhHHHHhcCccch------hehheeeeEEEEEeCCCCEE
Confidence 99999999998888998988887654455555544 36788999999999999874
No 19
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=6.6e-19 Score=155.17 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=115.8
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHH
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~ 155 (216)
...+.+++.|+|++|+++++++++++++|+.++|+|||..-..... ++++|+++ ++.++++.++.+++|+||+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~--~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGF--DGTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCc--cEEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 3468899999999999999999999999999999999975322212 38999997 58888876677999999999999
Q ss_pred HHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCC-CeeC
Q 027960 156 LNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAK-GEKF 216 (216)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~d-G~iv 216 (216)
|.+++.++|+.|+.+..|++++||.+.++++|++| ..+.|.|.++++++.+ |+++
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~ 162 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVR 162 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEE
Confidence 99999999999999999999999999999999988 4789999999999865 8863
No 20
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=7.7e-19 Score=151.37 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=112.2
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCc-eeEEeCCCCeEEecCCCcHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFS-EISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~-~i~id~~~~~v~v~aGv~~~~ 155 (216)
.....+++|++++|+++++++++++++|+.++|+|||+...+... +|++|+++.++ ++..+.+..+++|+||+.|.+
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~--~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGF--DGLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCc--CeEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 356789999999999999999999999999999999976555444 38999998754 666665555899999999999
Q ss_pred HHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 156 LNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 156 l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
|.+++.++|+.|+.+..|.++++|.+.+++.|++| +.+.|.|.++++++.+|++
T Consensus 97 l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg------~ei~d~l~~V~~~~~~g~~ 150 (295)
T PRK14649 97 TARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYG------GDTATVLIRAWLLLNGSEC 150 (295)
T ss_pred HHHHHHHcCCccccccCCCCcchhHHHHhhccccc------eEhheeEEEEEEEeCCCCE
Confidence 99999999998899888888877766677777776 7899999999999999976
No 21
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.78 E-value=2e-19 Score=155.41 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=134.2
Q ss_pred ccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCe
Q 027960 66 IQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKT 144 (216)
Q Consensus 66 ~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~ 144 (216)
.+|..|.....-....|+.|++++||++++++|+++++-+++.||.+..-|.+.+-- +-++++|.+||+| ++|+-.++
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGi 155 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGI 155 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccce
Confidence 345567766677889999999999999999999999999999999999877777653 4799999999999 99999999
Q ss_pred EEecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960 145 AWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 145 v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
+++++|+.++++..+|+++|+ .+.+.-|.-+++-|||.+++++.|..--+||...-+|+++|+|+|+|+|+
T Consensus 156 l~cdaG~ILen~d~~l~e~g~-m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl 226 (511)
T KOG1232|consen 156 LKCDAGVILENADNFLAEKGY-MFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVL 226 (511)
T ss_pred EEeccceEehhhHHHHHhcCc-eeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchh
Confidence 999999999999999999977 55555677788999999999999999999999999999999999999975
No 22
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=2.8e-18 Score=148.28 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=104.7
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccC-CceeEEeCCCCeEEecCCCcHH
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISIDAEAKTAWVQSGATVG 154 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~-~~~i~id~~~~~v~v~aGv~~~ 154 (216)
-..|.++++|+|++||++++++|+++++|+.++|+|||..-..... ++++|++++ ++.+..+ +.+++|+||+.|.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~--~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGV--RGVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCE--eeEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 4578899999999999999999999999999999999974222111 389999976 5555543 5699999999999
Q ss_pred HHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCe
Q 027960 155 QLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGE 214 (216)
Q Consensus 155 ~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~ 214 (216)
+|.+++.++|+.|+.+..|.++ ++||.+.+++ +.+||.+.|+|+++++|++||.
T Consensus 109 ~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNa----Ga~ggei~d~v~~v~vv~~~G~ 162 (302)
T PRK14652 109 RLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNA----GTKLGEMKDVVTAVELATADGA 162 (302)
T ss_pred HHHHHHHHcCCcccccccCCCc--chhHHHHHcC----CCCceEhhheEEEEEEECCCCc
Confidence 9999999999988888777766 4555555443 2466899999999999999984
No 23
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.78 E-value=3.9e-19 Score=156.63 Aligned_cols=139 Identities=24% Similarity=0.316 Sum_probs=116.8
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecC
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQS 149 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~a 149 (216)
|+....++.+-|-+|++++|+.++|+.|++++.++++.|.|||..+.++.+ |.+|+++.||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 333344567778899999999999999999999999999999998877643 799999999998 9999999999999
Q ss_pred CCcHHHHHHHHHhhCCCceEecC-CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 150 GATVGQLNYRIAEKSQNLLAFPV-GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 150 Gv~~~~l~~~l~~~g~~gl~~~~-g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
|+++.+|++++.+.| +.+|. +.-..++|||.+.+|+||.....|+.....++...++.+||.+
T Consensus 119 GirlrQLie~~~~~G---lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v 182 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLG---LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFV 182 (518)
T ss_pred CcCHHHHHHHHHhcC---ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceE
Confidence 999999999999995 56655 4446789999999999998666566666666666666788854
No 24
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=145.10 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=121.8
Q ss_pred cCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-CccCCC--CeEEEEccCCcee-EEeCCCCeEE
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL-SSISDV--PFIIVDLINFSEI-SIDAEAKTAW 146 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~-~~~~~~--~gvvIdl~~~~~i-~id~~~~~v~ 146 (216)
|.......|+.|+.|+..+||.++|+.|.++++-+.+.|||+|.++. ..+.++ .-+.+|++.||+| .+|.++.++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 44556779999999999999999999999999999999999997644 333332 2455888999999 9999999999
Q ss_pred ecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 147 VQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 147 v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
+++|+...+|.+.|.+.|+ -...-+.+..-.++|||+++.+.|+.-..||.+.|.|+.+++|+|.|.|
T Consensus 233 ~eaGIvGQ~LERqL~~~G~-t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Gii 300 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGF-TCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGII 300 (613)
T ss_pred EecCcchHHHHHHHhhcCc-ccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchh
Confidence 9999999999999999965 2222222223478999999999999999999999999999999999975
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=9.7e-17 Score=138.20 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=106.7
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHHH
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l~ 157 (216)
...+++.|++++|++++++++++ ++|+.++|+|+|........+ +++|.+++|+.++++ +..++|+||+.|.+|.
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~--~~~v~v~AG~~l~~L~ 107 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVD--NDKIICESGLSLKKLC 107 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEe--CCEEEEeCCCcHHHHH
Confidence 45689999999999999999999 999999999999765554443 899999789999886 3589999999999999
Q ss_pred HHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 158 YRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
+++.++|+.|+.+..|.++++|.+=.++.|+|| +.+.|.|.++++++ +|++
T Consensus 108 ~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGayG------~ei~d~l~~V~~~d-~g~v 158 (297)
T PRK14653 108 LVAAKNGLSGFENAYGIPGSVGGAVYMNAGAYG------WETAENIVEVVAYD-GKKI 158 (297)
T ss_pred HHHHHCCCcchhhhcCCchhHHHHHHHhCccCc------hhhheeEEEEEEEC-CCEE
Confidence 999999999999999998886554455555544 34899999999999 6765
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=9.5e-16 Score=132.00 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=111.9
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCcc-CCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHH
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSI-SDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~-~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l 156 (216)
....++.|++++|+++++++++++++|+.+.|+|+|..-.... . ++++|.+.+|+.++++. ..++|+||+.|.+|
T Consensus 32 ~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~--~g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~l 107 (302)
T PRK14650 32 ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEI--DFPIIYTGHLNKIEIHD--NQIVAECGTNFEDL 107 (302)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCcc--ceEEEEECCcCcEEEeC--CEEEEEeCCcHHHH
Confidence 4467899999999999999999999999999999996433332 2 37888886799998763 47999999999999
Q ss_pred HHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 157 NYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
.+++.++|++|+.+..|.++++|.+-.++.|+|| +.+.|.|.++++++.+|++
T Consensus 108 ~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG------~ei~d~l~sV~~~d~~g~~ 160 (302)
T PRK14650 108 CKFALQNELSGLEFIYGLPGTLGGAIWMNARCFG------NEISEILDKITFIDEKGKT 160 (302)
T ss_pred HHHHHHcCCchhhhhcCCCcchhHHHHhhCCccc------cchheeEEEEEEEECCCCE
Confidence 9999999999999999999999888888888888 6799999999999999876
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.5e-15 Score=129.31 Aligned_cols=131 Identities=23% Similarity=0.287 Sum_probs=117.6
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHH
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l 156 (216)
.....++.|++++|+.++++++.+.++|+.+.|+|+|..-..... ++++|.+.+++.++++.+...+++++|+.|.+|
T Consensus 19 g~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~--~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~l 96 (291)
T COG0812 19 GPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGI--GGVVIKLGKLNFIEIEGDDGLIEAGAGAPWHDL 96 (291)
T ss_pred cceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCC--ceEEEEcccccceeeeccCCeEEEccCCcHHHH
Confidence 355789999999999999999999999999999999954322222 489999999999888877779999999999999
Q ss_pred HHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 157 NYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 157 ~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
.+++.++|+.|+.+..|.++++|-.-+++.|+|| +.+.|.+.++++++.+|++
T Consensus 97 ~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG------~Ei~d~~~~v~~ld~~G~~ 149 (291)
T COG0812 97 VRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYG------VEISDVLVSVEVLDRDGEV 149 (291)
T ss_pred HHHHHHcCCcchhhhcCCCcccchhhhccCcccc------cchheeEEEEEEEcCCCCE
Confidence 9999999999999999999999988889999998 6799999999999999986
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=1.7e-15 Score=132.22 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=110.8
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEe-CCC--CeEEecCCCcHH
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISID-AEA--KTAWVQSGATVG 154 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id-~~~--~~v~v~aGv~~~ 154 (216)
....++.|+|++|+++++++++++++|+.+.|+|+|..-.. .. +|++|.+ +|+.++++ .++ ..++++||+.|.
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~--~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~~ 95 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DF--DGTVLLN-RIKGIEVLSEDDDAWYLHVGAGENWH 95 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CC--CEEEEEe-cCCceEEEecCCCeEEEEEEcCCcHH
Confidence 45689999999999999999999999999999999964333 23 4899987 48888773 222 289999999999
Q ss_pred HHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCC-Cee
Q 027960 155 QLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAK-GEK 215 (216)
Q Consensus 155 ~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~d-G~i 215 (216)
+|.+++.++|+.|+.+..|.++++|.+=.++.|++| +.+.|.|.++++++.+ |++
T Consensus 96 ~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG------~ei~d~l~~V~v~d~~~g~~ 151 (334)
T PRK00046 96 DLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYG------VELKDVCDYVEALDLATGEF 151 (334)
T ss_pred HHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCc------ccHheeEEEEEEEECCCCcE
Confidence 999999999999999999999999888888888888 6799999999999987 876
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.61 E-value=5.5e-15 Score=129.20 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=107.5
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEe---CCCCeEEecCCCcHH
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISID---AEAKTAWVQSGATVG 154 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id---~~~~~v~v~aGv~~~ 154 (216)
....++.|++++|+++++++++++++|+.+.|+|+|..-..... ++++|.+.+|+.+++. .+...++|+||+.|.
T Consensus 29 ~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~--~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~~ 106 (354)
T PRK14648 29 AAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGV--PGLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPVA 106 (354)
T ss_pred EEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCc--cEEEEEeCCcCceEEeeccCCcEEEEEEeCCcHH
Confidence 45689999999999999999999999999999999965433333 3899998679888752 222479999999999
Q ss_pred HHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEEC
Q 027960 155 QLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMID 210 (216)
Q Consensus 155 ~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~ 210 (216)
+|.+++.++|+.|+.+..|.+++||.+-.++.|++| +.+.|.|.++++++
T Consensus 107 ~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG------~ei~d~l~~V~v~d 156 (354)
T PRK14648 107 ALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYG------RAIADCFHSARTLV 156 (354)
T ss_pred HHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccc------eEhhheEEEEEEEe
Confidence 999999999999999999999999888888888888 67999999999993
No 30
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.35 E-value=4.8e-12 Score=107.73 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=95.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccC-CceeEEeCCCCeEEecCCCcHHHHHH
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISIDAEAKTAWVQSGATVGQLNY 158 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~-~~~i~id~~~~~v~v~aGv~~~~l~~ 158 (216)
..++ |++++|+++++ ++|+.+.|+|+|..-..... ++++|.+.+ ++.++++ . +++||+.|.+|.+
T Consensus 22 ~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~--~g~vI~l~~~~~~~~~~--~---~a~AG~~~~~l~~ 87 (273)
T PRK14651 22 ELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGV--PERVIRLGGEFAEWDLD--G---WVGGGVPLPGLVR 87 (273)
T ss_pred EEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCc--ceEEEEECCcceeEeEC--C---EEECCCcHHHHHH
Confidence 3455 99999999988 59999999999964333323 388888865 6666553 2 6999999999999
Q ss_pred HHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCee
Q 027960 159 RIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK 215 (216)
Q Consensus 159 ~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~i 215 (216)
++.++|+.|+.+..|.++++|.+-.++.|+|| +.+.|.|.++++++ +|++
T Consensus 88 ~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG------~ei~d~l~~V~~~~-~g~~ 137 (273)
T PRK14651 88 RAARLGLSGLEGLVGIPAQVGGAVKMNAGTRF------GEMADALHTVEIVH-DGGF 137 (273)
T ss_pred HHHHCCCcchhhhcCCCcchhhHHHhhCCccc------cChheeEEEEEEEE-CCCE
Confidence 99999999999999999999887788888887 67899999999997 7875
No 31
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.06 E-value=8.4e-10 Score=93.22 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=90.0
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHHH
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l~ 157 (216)
....++.|++.+ + ++|+.+.|+|+|..-..... ++++ -+++|+.++++. .+++++||+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~--~~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPK--NLAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCc--cEEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 345677788776 5 89999999999964333222 2444 456788888754 479999999999999
Q ss_pred HHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEEC
Q 027960 158 YRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMID 210 (216)
Q Consensus 158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~ 210 (216)
+++.++|+.|+.+..|.++++|-+-+++.|++| +.+.|.|.++++++
T Consensus 82 ~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g------~ei~d~l~~V~~~~ 128 (257)
T PRK13904 82 NYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKE------YEISNNLESICTNG 128 (257)
T ss_pred HHHHHCCCchhhhhcCCCccHHHHHHhcCCcCc------cchheeEEEEEEEe
Confidence 999999999999999999999877788888888 56889999999986
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.00 E-value=1.9e-10 Score=100.51 Aligned_cols=87 Identities=26% Similarity=0.323 Sum_probs=75.5
Q ss_pred EEccCCcee-EEeCCCCeEEecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeE
Q 027960 128 VDLINFSEI-SIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDA 206 (216)
Q Consensus 128 Idl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~ 206 (216)
|++..+..| ++|.++.+|+|||+++++++.++|-+.|+ .|++.+ -..+.++||.+.|-|.-..|++||+..+.+.+.
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~-tLaV~~-EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGY-TLAVLP-ELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCc-eeeeec-ccccceecceeeecccccccchhhhHHhhhhee
Confidence 445545566 89999999999999999999999999977 555543 336899999999999999999999999999999
Q ss_pred EEECCCCeeC
Q 027960 207 HMIDAKGEKF 216 (216)
Q Consensus 207 ~vV~~dG~iv 216 (216)
|+|++||+++
T Consensus 184 EvVladGelv 193 (543)
T KOG1262|consen 184 EVVLADGELV 193 (543)
T ss_pred EEEecCCeEE
Confidence 9999999974
No 33
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.94 E-value=0.0017 Score=51.78 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=62.9
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHH
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g-~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l 156 (216)
+..+++|+|.+|+.++++ .+-...+.+||+.... ..........+||++++... .+..+++.+++||++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 356889999999999988 2335789999998421 00110013599999976555 44445789999999999999
Q ss_pred HHH---------HHhhCCCceEecCCCCccccchhccccCCC
Q 027960 157 NYR---------IAEKSQNLLAFPVGTCPGVGVGGHFSGGGY 189 (216)
Q Consensus 157 ~~~---------l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~ 189 (216)
.+. |.++-. .+ -....-...|+||.++.+..
T Consensus 78 ~~~~~~~~~~p~L~~~~~-~i-as~~IRn~aTiGGNl~~~~~ 117 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAAR-RI-ASPQIRNRATIGGNLCNASP 117 (171)
T ss_dssp HHHHHHHHHHHHHHHHHC-TS-S-HHHHTT-BHHHHHHHTBT
T ss_pred hhcchhhhhHHHHHHHHH-Hh-CCHhHeeeeeeccccccCcc
Confidence 876 222100 00 00011135789999976654
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=96.72 E-value=0.0067 Score=51.55 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=64.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHH
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYR 159 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~ 159 (216)
-++.|+|.+|+.++++. ++-...+.+||+...... ......++||++++ .. .+..+++.++++|++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 47789999999987763 433467899999963211 11124689999976 55 45556789999999999999863
Q ss_pred H------HhhCCCceEecCCCCccccchhccccCC
Q 027960 160 I------AEKSQNLLAFPVGTCPGVGVGGHFSGGG 188 (216)
Q Consensus 160 l------~~~g~~gl~~~~g~~~~vgvgG~~~ggg 188 (216)
. .+.-. ..-.+..-...|+||.++.+.
T Consensus 79 ~~~~~~L~~a~~--~vas~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 79 RFIPAALREALG--FVYSRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred cccHHHHHHHHH--HhCCHHHhccchhHHHhhcCC
Confidence 2 21100 000111223567899887553
No 35
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.21 E-value=0.02 Score=48.61 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=63.1
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHH-
Q 027960 82 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYR- 159 (216)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~- 159 (216)
+++|+|.+|+.++++. ++-.-.+.+||++..-.-. .....++||++++ .. .+..+++.++++|.+++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 6789999999887663 3333568899999642111 1123588999876 44 45555678999999999998752
Q ss_pred -----HHhhCCCceEecCCCCccccchhccccCC
Q 027960 160 -----IAEKSQNLLAFPVGTCPGVGVGGHFSGGG 188 (216)
Q Consensus 160 -----l~~~g~~gl~~~~g~~~~vgvgG~~~ggg 188 (216)
|.+.- ...-.+..-...|+||.++.+.
T Consensus 79 ~~~~~L~~aa--~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 79 LTPAALKEAL--GFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred chHHHHHHHH--HHhCCHHHhccccHHHHhhcCC
Confidence 22220 0011112224578899888654
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=96.19 E-value=0.012 Score=50.92 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=51.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCCccCCCCeEEEEccCCcee-EEe-CCCCeEEecCCCcHHHHH
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSISDVPFIIVDLINFSEI-SID-AEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~-g~~~~~~~~gvvIdl~~~~~i-~id-~~~~~v~v~aGv~~~~l~ 157 (216)
-++.|+|.+|+.++++. ++ ..++.+||++.. ...........+||++++... .+. .++..+++++++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 58889999999988764 22 357899999852 111111124689999976554 444 234679999999999997
Q ss_pred H
Q 027960 158 Y 158 (216)
Q Consensus 158 ~ 158 (216)
+
T Consensus 82 ~ 82 (291)
T PRK09971 82 E 82 (291)
T ss_pred c
Confidence 5
No 37
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.84 E-value=0.029 Score=51.68 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=67.6
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHH
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQL 156 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g-~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l 156 (216)
..-+++|+|.+|+.++++. +. ..++.+||++..- ..........+||++++... .+..++..++++|++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988764 22 3678999999621 11111123689999976655 44455678999999999999
Q ss_pred HHHHHhhCC--C---ceEecCCCCccccchhccccCC
Q 027960 157 NYRIAEKSQ--N---LLAFPVGTCPGVGVGGHFSGGG 188 (216)
Q Consensus 157 ~~~l~~~g~--~---gl~~~~g~~~~vgvgG~~~ggg 188 (216)
.+.+.++-- . ...-.+..-...|+||.++.+.
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 876654300 0 0000111223567888887654
No 38
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=94.89 E-value=0.049 Score=47.77 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=51.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g-~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
--+++|+|.+|+.++++.. + .-.+.+||++... .-........+||++++... .+..+++.+++|+++++.++.
T Consensus 5 f~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 3588999999998887642 2 3468999998421 11111123689999976544 344456789999999999985
Q ss_pred H
Q 027960 158 Y 158 (216)
Q Consensus 158 ~ 158 (216)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 4
No 39
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.31 E-value=0.062 Score=45.70 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=49.4
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-Ccc-CCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHH
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL-SSI-SDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNY 158 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~-~~~-~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~ 158 (216)
|+|.+|+.++++.. + ..++.+||+...-. ... ......+||++++... .++.+++.+++++++++.++.+
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 78888888877742 2 35789999985211 111 0113689999987665 5566678999999999999964
No 40
>PLN02906 xanthine dehydrogenase
Probab=93.13 E-value=0.17 Score=52.37 Aligned_cols=79 Identities=8% Similarity=0.089 Sum_probs=56.1
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g-~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
.-+++|+|.+|+.++++.. . ..++.+||++..- .........++||++++..+ .+..++..++++|++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4588999999999876642 2 2568899999632 11111124689999976655 455556789999999999999
Q ss_pred HHHHh
Q 027960 158 YRIAE 162 (216)
Q Consensus 158 ~~l~~ 162 (216)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 41
>PLN00192 aldehyde oxidase
Probab=92.79 E-value=0.33 Score=50.33 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=58.0
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
..-+++|.|.+|+.++++.....+-..++..||++..-.-. .....++||++++..+ .+..++..++++|++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34689999999999887642101123678899999632211 2123689999976655 455556789999999999998
Q ss_pred HHHHhh
Q 027960 158 YRIAEK 163 (216)
Q Consensus 158 ~~l~~~ 163 (216)
+.+...
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 766553
No 42
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.65 E-value=0.47 Score=49.23 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=55.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g-~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
.-+++|+|.+|+.++++.. . .-++..||++..- ..........+||+++...+ .+..++..++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4688999999999887642 2 3568899999632 11111113589999976665 455556789999999999998
Q ss_pred HHHH
Q 027960 158 YRIA 161 (216)
Q Consensus 158 ~~l~ 161 (216)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 43
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=87.96 E-value=1.9 Score=37.15 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-CccCCCCeEEEEccCCce-e-EEeCCCCeEEecCCCcHHH
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL-SSISDVPFIIVDLINFSE-I-SIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~-~~~~~~~gvvIdl~~~~~-i-~id~~~~~v~v~aGv~~~~ 155 (216)
+.-+.+|.|.+|..++++ +.+ --.+.+|||+.... -.....+..+||++++.. . ....+++.+++||-+++.|
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 567889999998877776 344 56789999995421 110112468899988742 2 3344567799999999999
Q ss_pred HH
Q 027960 156 LN 157 (216)
Q Consensus 156 l~ 157 (216)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=77.84 E-value=6.6 Score=35.34 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=53.7
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccC-CCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSIS-DVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN 157 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~-~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~ 157 (216)
..++.|.+.+|+..++.. +-..++..|++.+.-+.... .+-..+|-..++..+ .++...+.++++||+++.+.+
T Consensus 204 ~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~ 279 (493)
T COG4630 204 DRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAY 279 (493)
T ss_pred ceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHH
Confidence 458889999999887643 33467778888864222211 011234444555554 455567899999999999999
Q ss_pred HHHHhh
Q 027960 158 YRIAEK 163 (216)
Q Consensus 158 ~~l~~~ 163 (216)
++|..+
T Consensus 280 ~~la~~ 285 (493)
T COG4630 280 RALAGR 285 (493)
T ss_pred HHHHhh
Confidence 998865
No 45
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=66.27 E-value=37 Score=29.01 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=60.4
Q ss_pred CceEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeE
Q 027960 47 SKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFI 126 (216)
Q Consensus 47 ~~~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gv 126 (216)
...|++|+-++.+.... . ...++++|++++-+...+.+.+-.+.=|||... ... .+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eE
Confidence 45688888776665432 1 267899999999999999999988888899864 111 35
Q ss_pred EEEccCCcee---EEeCCCCeEEecCCCcHHHHHHHHHhhCC
Q 027960 127 IVDLINFSEI---SIDAEAKTAWVQSGATVGQLNYRIAEKSQ 165 (216)
Q Consensus 127 vIdl~~~~~i---~id~~~~~v~v~aGv~~~~l~~~l~~~g~ 165 (216)
+.|-..+... .++.+ =+=+.||++......-..+|+
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 5554422222 12222 256899999876665555644
No 46
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=65.97 E-value=11 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.|- .|+.|.+.+|+..++++|-+.+-|+.+|
T Consensus 122 iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 122 IPNMTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 454 6899999999999999999888888877
No 47
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.35 E-value=12 Score=30.14 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=30.8
Q ss_pred ccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEE
Q 027960 70 VFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 70 ~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v 107 (216)
+|.. .-.|..||..++++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5643 56999999999999999999999999988544
No 48
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=61.15 E-value=15 Score=29.05 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=27.0
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHh--cCCcEEEEcC
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKK--SGLQIRVRSG 110 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~--~~~~~~v~gg 110 (216)
.|. .|+.|.+.+|+..+++++-+ .+-|+.+|-.
T Consensus 136 iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 136 IPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp STTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 454 68899999999999999999 6788888753
No 49
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=60.58 E-value=35 Score=32.30 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=47.9
Q ss_pred CceEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcC-CcEEE-----EcCCC-CCCCC
Q 027960 47 SKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSG-LQIRV-----RSGGH-DLEGL 117 (216)
Q Consensus 47 ~~~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~-~~~~v-----~ggGh-s~~g~ 117 (216)
.+.++.-+-|+-+++.+ ++....= .-.|-..+.|.+.|+|..+++.|+++. .|+.+ |+||| ||.+.
T Consensus 125 ~gvvIsAGIP~le~A~E-lI~~L~~----~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDl 197 (717)
T COG4981 125 DGVVISAGIPSLEEAVE-LIEELGD----DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDL 197 (717)
T ss_pred ceEEEecCCCcHHHHHH-HHHHHhh----cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhc
Confidence 67888888888888754 4444322 247889999999999999999999874 56655 34555 46553
No 50
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=59.77 E-value=19 Score=26.80 Aligned_cols=31 Identities=0% Similarity=-0.007 Sum_probs=28.5
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.+..|++..+++|+.++-+.+++.+++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 8899999999999999999999999987663
No 51
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=58.65 E-value=12 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCC
Q 027960 91 IQAAIKCSKKSGLQIRVRSGGHDL 114 (216)
Q Consensus 91 v~~~v~~a~~~~~~~~v~ggGhs~ 114 (216)
..+.++|++++++||.+.++|.++
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 456788999999999999999995
No 52
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=58.63 E-value=16 Score=31.58 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=38.3
Q ss_pred eEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCC------HHHHHHHHHHHHhc------CCcEEEEcCCCC
Q 027960 49 VIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFH------VSEIQAAIKCSKKS------GLQIRVRSGGHD 113 (216)
Q Consensus 49 ~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~------~~dv~~~v~~a~~~------~~~~~v~ggGhs 113 (216)
.|..|+...|.+... .-+.||. ....+++|.. ++++.++++.+.+. ++=+.+||||.-
T Consensus 19 vITs~~gAa~~D~~~--~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 19 VITSPTGAAIQDFLR--TLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred EEeCCchHHHHHHHH--HHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 345566667777654 2233553 3456666654 68999999999865 456788888874
No 53
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=52.38 E-value=26 Score=25.90 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.0
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEE-EEcCCC
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIR-VRSGGH 112 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~-v~ggGh 112 (216)
...+..|++..|++|+.++.+.+.+.+++.. ++-.|+
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~ 82 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGL 82 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3588999999999999999999999998843 444444
No 54
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=49.62 E-value=31 Score=27.17 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=26.4
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.|- .|+.|.+.+|...+++++.+.+-|+.++
T Consensus 133 iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 133 IPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 454 6888999999999999999888787664
No 55
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.01 E-value=24 Score=32.13 Aligned_cols=57 Identities=28% Similarity=0.361 Sum_probs=38.1
Q ss_pred eEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCH------HHHHHHHHHHHhc--CCcEEEEcCCC
Q 027960 49 VIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHV------SEIQAAIKCSKKS--GLQIRVRSGGH 112 (216)
Q Consensus 49 ~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~------~dv~~~v~~a~~~--~~~~~v~ggGh 112 (216)
.|..|....+.+... .-+.||. .-..+++|... +++.++++.+.+. ++=+.+||||+
T Consensus 140 viTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 140 VITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EEeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 344555667777654 2344664 23566666655 8899999988874 66688899985
No 56
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=46.60 E-value=40 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcE-EEEcCCC
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQI-RVRSGGH 112 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~-~v~ggGh 112 (216)
...+..|+...+++|+.++.+.+.+.+++. .++=.|+
T Consensus 47 ~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~ 84 (115)
T cd02407 47 EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGR 84 (115)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 458899999999999999999999998884 3333333
No 57
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=45.67 E-value=31 Score=23.07 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCce
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE 135 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~ 135 (216)
.+++|++-+|+++++...++. ..+++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g----------------------~~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREG----------------------KIVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcC----------------------CEEEEECCCCCH
Confidence 478999999999999888762 257888887764
No 58
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=44.58 E-value=63 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEE-EEcCCCC
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIR-VRSGGHD 113 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~-v~ggGhs 113 (216)
..+..|++..|++|+.++.+.|.+.+++.. ++-.|+.
T Consensus 49 g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 49 GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 478999999999999999999999999964 4455554
No 59
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.03 E-value=24 Score=30.44 Aligned_cols=28 Identities=14% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
-|.+|+++++++|+++++.|.|- .=||.
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 47899999999999999988774 23565
No 60
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.38 E-value=2.1e+02 Score=25.40 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=27.8
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.|. .|+.|.|.+|+..+++++.+.+-|+.+|
T Consensus 163 iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 163 VPGLKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 554 6889999999999999999888899998
No 61
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=42.56 E-value=77 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=30.7
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL 117 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~ 117 (216)
.....+.|.+.+++.+.++.+.+ +..+.+..||.+....
T Consensus 43 v~~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~g~~ 81 (144)
T TIGR00177 43 VSRLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGVGPR 81 (144)
T ss_pred EEEEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCCC
Confidence 34466789999999999988765 6788899999887543
No 62
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=42.02 E-value=27 Score=30.68 Aligned_cols=23 Identities=0% Similarity=0.160 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
=|.+|+++++++|+++++.|.+-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38899999999999999988764
No 63
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=41.23 E-value=83 Score=25.12 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=48.3
Q ss_pred hhHHHHhhhcCCCCCceEEcCCCCCchHH----Hhh---cccccccCCCC-------CCCccEEEEeCCHH-HHHHHHHH
Q 027960 33 ENFLKCLSLQSDTISKVIYTQNNSSYSSV----LKS---SIQNLVFSAPT-------NQKPLFIITPFHVS-EIQAAIKC 97 (216)
Q Consensus 33 ~~~~~cl~~~~~~~~~~v~~p~~~~y~~~----~~~---~~~n~~w~~~~-------~~~P~~vv~P~~~~-dv~~~v~~ 97 (216)
++-..||++...+ .+.||.-+-.+.+.. ..+ ...-.+|.... ...=..++.|.+.+ |++++++.
T Consensus 25 edaARlLAQA~vg-eG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~ 103 (172)
T PF10740_consen 25 EDAARLLAQAIVG-EGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQ 103 (172)
T ss_dssp HHHHHHHHHHHHT-T--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 4567789887665 778876543322111 100 01112454211 12223566677776 99999999
Q ss_pred HHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEE
Q 027960 98 SKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAW 146 (216)
Q Consensus 98 a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~ 146 (216)
+.+.++|++..+--++ ...+..+- -.+-||++--+.+-.+++..++-
T Consensus 104 L~~~gi~~v~Vs~~~~-~~~~l~~~-~~~~Idl~~~~~LvP~EdG~Rig 150 (172)
T PF10740_consen 104 LIEQGIPFVGVSPNKP-DEEDLEDL-ADVHIDLKLPKPLVPTEDGDRIG 150 (172)
T ss_dssp HHHHT--EEEEE-SS----TTGGG--SSS-EE----S-SEE-TTS-EE-
T ss_pred HHHCCCCEEEEEecCC-CCCchhhh-hhheeecccCCCcccCCCCCEec
Confidence 9999999999981111 11122111 13678887666666666654443
No 64
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=40.69 E-value=24 Score=30.68 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=22.5
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
.=|.+|+++++++|+++++.|.|- .=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 347899999999999999998764 45776
No 65
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.65 E-value=29 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
+-|.+|+++++++|+++++.+.|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 358999999999999999998874
No 66
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=40.63 E-value=50 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.1
Q ss_pred Cc-cEEEEeCCHHHHHHHHHHHHhc-CCcEEEE
Q 027960 78 KP-LFIITPFHVSEIQAAIKCSKKS-GLQIRVR 108 (216)
Q Consensus 78 ~P-~~vv~P~~~~dv~~~v~~a~~~-~~~~~v~ 108 (216)
.| ..|+.|.+.+|+..+++++.+. +-|..+|
T Consensus 131 iP~~~v~~P~~~~e~~~~l~~a~~~~~~p~~i~ 163 (168)
T smart00861 131 IPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIR 163 (168)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 55 4589999999999999999865 3465444
No 67
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=40.58 E-value=75 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.0
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCCCCCCCCc
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKS-GLQIRVRSGGHDLEGLSS 119 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~-~~~~~v~ggGhs~~g~~~ 119 (216)
-...+.|.+.+++.+.++.+.+. +..+.+-.||.+......
T Consensus 37 ~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~ 78 (152)
T cd00886 37 VAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDV 78 (152)
T ss_pred eeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcC
Confidence 34567799999999999887653 567888889988654433
No 68
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=40.42 E-value=1e+02 Score=28.22 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=31.7
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGG 111 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggG 111 (216)
....++.|+.+|-..++.+.++++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 4568999999999999999999999999999988
No 69
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=39.61 E-value=1.1e+02 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v 107 (216)
.+.+||.++++..+++++|+-+
T Consensus 21 ~~~~~v~~~~~~~r~~~iP~d~ 42 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIPLDV 42 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCcce
Confidence 5789999999999999999744
No 70
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=39.53 E-value=75 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=30.0
Q ss_pred CCCccEEEEeCCHHHHHHHHHHHHhcCCcEEE-EcCCC
Q 027960 76 NQKPLFIITPFHVSEIQAAIKCSKKSGLQIRV-RSGGH 112 (216)
Q Consensus 76 ~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v-~ggGh 112 (216)
...+..+++-.+++|+.++.+.|.+.+++..+ +=.|+
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGH 84 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34788999999999999999999999998643 33444
No 71
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=39.16 E-value=1.2e+02 Score=25.40 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=20.3
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEE
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v 107 (216)
..+.+||.++++..+++++|+-.
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~ 42 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDG 42 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccE
Confidence 57999999999999999999633
No 72
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.00 E-value=33 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
-|.+|+++++++|+++++.+.+- .=||+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999988764 34666
No 73
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=38.47 E-value=61 Score=24.00 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=27.6
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
-.+..|+.-.+++|+.++.+.+.+.+++..+.
T Consensus 48 G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T cd02430 48 GQKKIVLKVNSEEELLELKKKAKSLGLPTSLI 79 (115)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHcCCCeEEE
Confidence 37889999999999999999999999985443
No 74
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.04 E-value=33 Score=30.36 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
|.+|+++++++|+++++.|.+- .=||.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~ 112 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHA 112 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhH
Confidence 7899999999999999988764 23555
No 75
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=37.94 E-value=2.7e+02 Score=24.29 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=28.1
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVRS 109 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~g 109 (216)
.|. .|+.|.+.+|+..+++++.+.+-|+.++=
T Consensus 140 iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 172 (327)
T PRK09212 140 IPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLE 172 (327)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 565 68889999999999999999888999854
No 76
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=37.58 E-value=35 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
|.+|++++|++|+++++.|.+- .=||+
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~ 96 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHT 96 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhh
Confidence 8899999999999999988764 34666
No 77
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=36.54 E-value=1e+02 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=25.4
Q ss_pred ccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEE
Q 027960 70 VFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIR 106 (216)
Q Consensus 70 ~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~ 106 (216)
+|+......|..+..=.+ +....+++.|+++++|+.
T Consensus 9 ~Yd~~~~~aP~VvAKG~g-~~A~~I~~~A~e~~VPi~ 44 (82)
T TIGR00789 9 SYDTGKDKAPKVVASGVG-EVAERIIEIAKKHGIPIV 44 (82)
T ss_pred EeCCCCCCCCEEEEEeCC-HHHHHHHHHHHHcCCCEE
Confidence 354444567777777655 445778899999999974
No 78
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=36.52 E-value=50 Score=31.60 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCcc-EEEEeCCHHHHHHHHHHHHhcC-CcEEEEc
Q 027960 76 NQKPL-FIITPFHVSEIQAAIKCSKKSG-LQIRVRS 109 (216)
Q Consensus 76 ~~~P~-~vv~P~~~~dv~~~v~~a~~~~-~~~~v~g 109 (216)
...|. .|..|++++|+++.+.++..++ -|+.+|=
T Consensus 438 ~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRy 473 (627)
T COG1154 438 RCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRY 473 (627)
T ss_pred hcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEe
Confidence 34776 5667999999999999999988 6988873
No 79
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.84 E-value=1.4e+02 Score=25.59 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhcCCcE
Q 027960 86 FHVSEIQAAIKCSKKSGLQI 105 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~ 105 (216)
.+.+||.++++..+++++|+
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~ 41 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPL 41 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCc
Confidence 47899999999999999986
No 80
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=35.24 E-value=60 Score=26.85 Aligned_cols=33 Identities=9% Similarity=0.286 Sum_probs=29.7
Q ss_pred CceeEEeCCCCeEEecCCCcHHHHHHHHHhhCC
Q 027960 133 FSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQ 165 (216)
Q Consensus 133 ~~~i~id~~~~~v~v~aGv~~~~l~~~l~~~g~ 165 (216)
.+++++|.+++.+.|+.-+.+.++...|+.-|.
T Consensus 34 i~~vevdle~q~v~v~ts~p~s~i~~~le~tGr 66 (247)
T KOG4656|consen 34 INSVEVDLEQQIVSVETSVPPSEIQNTLENTGR 66 (247)
T ss_pred cceEEEEhhhcEEEEEccCChHHHHHHHHhhCh
Confidence 467889999999999999999999999998876
No 81
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.23 E-value=67 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 027960 82 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHD 113 (216)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs 113 (216)
+-.+...+|+.++++.|++++.|+....+.++
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34466889999999999999999999887665
No 82
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.93 E-value=35 Score=29.73 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
|.+|+++++++|+++++.+.+- .=||+
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~ 108 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHS 108 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHH
Confidence 8899999999999999988763 23564
No 83
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=34.83 E-value=2.3e+02 Score=27.36 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=67.8
Q ss_pred eCC-HHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccC--Cce---eEEeCCC---CeEEecCCC----
Q 027960 85 PFH-VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN--FSE---ISIDAEA---KTAWVQSGA---- 151 (216)
Q Consensus 85 P~~-~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~--~~~---i~id~~~---~~v~v~aGv---- 151 (216)
|.+ .+|+.+.++.+.+++-++...-+-......-.+.| |+||-|- |=+ --.++++ .+.-|=|--
T Consensus 308 p~~~~~eI~a~i~~~~~~~P~laMVnSdkGITNLHvPsD---VIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~ 384 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYAQRPELAMVNSDKGITNLHVPSD---VIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAG 384 (741)
T ss_pred ChhhHHHHHHHHHHHHhhCCCEEEeccCCCccccCCCcC---eEEecCcHHHHhccCCccCCCCCcccceeecCCccchH
Confidence 444 46799999999999999999887777666666664 8999651 111 0122222 122232322
Q ss_pred cHHHHHHHHHhhCCCceEecCCCCccccchhccccCC--CCccccccchHhhheeeEEEECCCCeeC
Q 027960 152 TVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGG--YGALLRKYGVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 152 ~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg--~G~~s~~~G~~~D~v~~~~vV~~dG~iv 216 (216)
...++.+++.++|. |.+...++|.=.|.++--+ ||+.--.|-...|- .++||+.+|+++
T Consensus 385 vYq~~I~~ck~nGa----fDp~TmGsV~NVGLMAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl 445 (741)
T TIGR00178 385 VYQVVIEDCKQNGA----FDPTTMGTVPNVGLMAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVL 445 (741)
T ss_pred HHHHHHHHHHhcCC----CCcccccCCcchhHhHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEE
Confidence 35677889999973 4343333333224444322 22211111111222 267788888764
No 84
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=34.08 E-value=38 Score=31.56 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=24.3
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
|.-|. |.+||+++|++|+-+|++|.+- .-||.
T Consensus 243 ~~~vY---T~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 243 PRHVY---TREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred cceee---cHHHHHHHHHHHHhccceeeecccCCccc
Confidence 44444 5699999999999999998874 34554
No 85
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=33.59 E-value=1.4e+02 Score=21.50 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=37.5
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHHHH
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYRIA 161 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~l~ 161 (216)
-+++.||..+++...+++.+++++- +++- . .+ ..+ ++|++++++....|..-.+-...+.
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~-~~g~----------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~ 64 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRH-PRGQ----------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLN 64 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEET-T-SS----------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHT
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEe-CCCC----------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhc
Confidence 3688999999999999999999982 2221 1 11 234 7889999998888766555544443
No 86
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.97 E-value=44 Score=30.70 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhcCCcEEEE--cCCCC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVR--SGGHD 113 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~--ggGhs 113 (216)
|.+|++++|++|+++++.|++- .=||+
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~ 123 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHA 123 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhH
Confidence 8899999999999999988764 23564
No 87
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.69 E-value=86 Score=24.82 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE 115 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~ 115 (216)
-++.|-++++|.++++..++.++.-.+..+=||+.
T Consensus 126 ~~i~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~ 160 (176)
T PF05378_consen 126 EVIEPLDEDEVREALRELKDKGVEAVAVSLLFSYR 160 (176)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCEEEEECccCCC
Confidence 47789999999999999999999998988888864
No 88
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=32.63 E-value=30 Score=31.63 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=36.3
Q ss_pred eEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeC------CHHHHHHHHHHHHhc---CCcEEEEcCCCC
Q 027960 49 VIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPF------HVSEIQAAIKCSKKS---GLQIRVRSGGHD 113 (216)
Q Consensus 49 ~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~------~~~dv~~~v~~a~~~---~~~~~v~ggGhs 113 (216)
.|..|+...|.+.+. .-+.||.. -..+++|. .++++.++++.+.+. ++=+.+||||+-
T Consensus 134 vits~~~aa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~ 200 (432)
T TIGR00237 134 VITSQTGAALADILH--ILKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL 200 (432)
T ss_pred EEeCCccHHHHHHHH--HHHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH
Confidence 344556667777654 33446642 23445554 458899999888763 455778888875
No 89
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=32.61 E-value=1.1e+02 Score=26.90 Aligned_cols=23 Identities=4% Similarity=-0.020 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.+.+||.++++..+++++|+-+.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i 43 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVI 43 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEE
Confidence 58999999999999999997554
No 90
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.48 E-value=1.4e+02 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=31.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHh-cCCcEEEEcCCCCCCCCCc
Q 027960 80 LFIITPFHVSEIQAAIKCSKK-SGLQIRVRSGGHDLEGLSS 119 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~-~~~~~~v~ggGhs~~g~~~ 119 (216)
..-+.|.+.+++++.++.+.+ .+..+.+-.||.+....+.
T Consensus 40 ~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~ 80 (163)
T TIGR02667 40 DRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDV 80 (163)
T ss_pred EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCC
Confidence 345669999999999988753 5788999999998765444
No 91
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=31.24 E-value=54 Score=24.75 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=27.4
Q ss_pred EEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEE
Q 027960 50 IYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 50 v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v 107 (216)
|..|+++.|.+.+...-.+.++ .| +.+++..+.+|+.++|+.+.-
T Consensus 36 vsdP~s~~Ygk~Lt~~e~~~~~------------~p-~~~~v~~V~~wL~~~G~~~~~ 80 (143)
T PF09286_consen 36 VSDPGSPNYGKYLTPEEFAALF------------AP-SPEDVAAVKSWLKSHGLTVVE 80 (143)
T ss_dssp HHTTTSTTTT----HHHHHHHH------------S---HHHHHHHHHHHHHCT-EEEE
T ss_pred CcCCCCcccccCCCHHHHHHHH------------CC-CHHHHHHHHHHHHHcCCceeE
Confidence 4678899888765432222223 23 578899999999999987765
No 92
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=30.62 E-value=88 Score=23.01 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=28.5
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHD 113 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs 113 (216)
.+++++.=++++.+.+.+++|.++++|+.+--.|.+
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 478999999999999999999999999988766664
No 93
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=30.55 E-value=1.8e+02 Score=25.60 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee---EEeCCCCeEEecCCCcHHHHHHHHHh
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI---SIDAEAKTAWVQSGATVGQLNYRIAE 162 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i---~id~~~~~v~v~aGv~~~~l~~~l~~ 162 (216)
.+.+||.++++..+++++|+ +.+.+|...|++- .+|+++ . +- -.++.+.|.+
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~------------------D~i~lDidy~~~~~~Ft~d~~~--F---Pd--p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPL------------------DGLHVDVDFQDNYRTFTTNGGG--F---PN--PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCC------------------ceEEEcCchhcCCCceeecCCC--C---CC--HHHHHHHHHH
Confidence 48899999999999999985 3677887766543 444332 1 22 3578888888
Q ss_pred hCC
Q 027960 163 KSQ 165 (216)
Q Consensus 163 ~g~ 165 (216)
.|.
T Consensus 76 ~G~ 78 (332)
T cd06601 76 KGL 78 (332)
T ss_pred CCC
Confidence 765
No 94
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=30.30 E-value=1.7e+02 Score=21.83 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG 116 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g 116 (216)
.....+.|.+.+++++.++.+.+.. .+.+-.||.+...
T Consensus 33 v~~~~~v~Dd~~~i~~~l~~~~~~~-D~VittGG~g~~~ 70 (144)
T PF00994_consen 33 VIRYGIVPDDPDAIKEALRRALDRA-DLVITTGGTGPGP 70 (144)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTT-SEEEEESSSSSST
T ss_pred eeEEEEECCCHHHHHHHHHhhhccC-CEEEEcCCcCccc
Confidence 3356788999999999998876655 7888888888643
No 95
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=30.12 E-value=1.1e+02 Score=24.71 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=32.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHh-cCCcEEEEcCCCCCCCCCcc
Q 027960 80 LFIITPFHVSEIQAAIKCSKK-SGLQIRVRSGGHDLEGLSSI 120 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~-~~~~~~v~ggGhs~~g~~~~ 120 (216)
...+.|.+.+++++.++.+.+ .+..+.+-.||.+.......
T Consensus 43 ~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvT 84 (193)
T PRK09417 43 ETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVT 84 (193)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcH
Confidence 346779999999999988765 57889999999998655543
No 96
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=29.90 E-value=86 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=28.1
Q ss_pred CCcc-EEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 77 QKPL-FIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 77 ~~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
..|- -|+.|.+.+|...+++++.+.+-|+.+|
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3666 4888999999999999999988999986
No 97
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=29.60 E-value=72 Score=23.14 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=28.7
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCC
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVRSGG 111 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggG 111 (216)
.|. .+|++.+..|++-++..|.+.|+|+...+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 565 5677788899999999999999999987743
No 98
>PRK06186 hypothetical protein; Validated
Probab=29.58 E-value=47 Score=27.77 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEcCCC
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVRSGGH 112 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ggGh 112 (216)
+..+--..++++|+++++|+.=..-|-
T Consensus 66 rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 66 RNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred ccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 567888899999999999988776653
No 99
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=29.25 E-value=2.1e+02 Score=25.52 Aligned_cols=117 Identities=13% Similarity=0.216 Sum_probs=62.7
Q ss_pred CceEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHh--cCCcEEEEcCCCC-CCCC--Cc-c
Q 027960 47 SKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKK--SGLQIRVRSGGHD-LEGL--SS-I 120 (216)
Q Consensus 47 ~~~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~--~~~~~~v~ggGhs-~~g~--~~-~ 120 (216)
...++.|+-+.-...+.+.-.+ +..-...|.++ +=.+||.+=+|+.-+ ++.||.+-|.||+ +... .. .
T Consensus 17 ~~~L~gPGPsnl~~~V~~A~~~---~~lgh~sPe~~---qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~le 90 (385)
T KOG2862|consen 17 VRTLLGPGPSNLSGRVQEAMSR---PSLGHMSPEFV---QIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLE 90 (385)
T ss_pred cceeecCCCcCCCHHHHHhhcC---CccccCCHHHH---HHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcC
Confidence 4557777655544443321111 11112345443 234566666666543 5799999999998 3211 11 1
Q ss_pred CCCCeEEEEccCCc--------ee--EEeCCCCeEEecCCCcHHHHHHHHHhhCCCceEecC
Q 027960 121 SDVPFIIVDLINFS--------EI--SIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPV 172 (216)
Q Consensus 121 ~~~~gvvIdl~~~~--------~i--~id~~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~ 172 (216)
+++..++..+.-+. ++ ++|.- ....+-+++++++.+.|.+|.. ++.+..
T Consensus 91 Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v--~~~~G~~~~le~i~~~lsqh~p-~~vfv~ 149 (385)
T KOG2862|consen 91 PGDNVLVVSTGTWGQRAADCARRYGAEVDVV--EADIGQAVPLEEITEKLSQHKP-KAVFVT 149 (385)
T ss_pred CCCeEEEEEechHHHHHHHHHHhhCceeeEE--ecCcccCccHHHHHHHHHhcCC-ceEEEE
Confidence 22234444443222 22 33322 4556778999999999999877 444433
No 100
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.66 E-value=4.4e+02 Score=25.09 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.1
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCCC
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKS-GLQIRVRSGGHD 113 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~-~~~~~v~ggGhs 113 (216)
.|. .|+.|.+..|+..++++|.+. +-|+.+|=....
T Consensus 401 iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 401 IPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHG 438 (581)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCc
Confidence 554 588999999999999999876 689888864333
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.40 E-value=1.5e+02 Score=25.59 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=20.3
Q ss_pred EEeCCHHHHHHHHHHHHhcCCcE
Q 027960 83 ITPFHVSEIQAAIKCSKKSGLQI 105 (216)
Q Consensus 83 v~P~~~~dv~~~v~~a~~~~~~~ 105 (216)
....++++|.++++..+++++|+
T Consensus 24 ~~~~s~~~v~~~~~~~~~~~iP~ 46 (303)
T cd06592 24 KADINQETVLNYAQEIIDNGFPN 46 (303)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCC
Confidence 55679999999999999999884
No 102
>smart00642 Aamy Alpha-amylase domain.
Probab=28.07 E-value=70 Score=25.04 Aligned_cols=22 Identities=5% Similarity=0.288 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v 107 (216)
.+.+|++++++.|+++++++.+
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999999998765
No 103
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=27.40 E-value=1.7e+02 Score=30.33 Aligned_cols=78 Identities=6% Similarity=0.036 Sum_probs=48.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHHHH
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLNYR 159 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~~~ 159 (216)
-...|.+.+|+.++.+ .........|-+...-.--.. +-...||.++.... .+..+..-+++++++++.++.+.
T Consensus 216 ~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~-~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 216 RWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSP-DYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred EEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccC-CCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 4567999999999887 333444555544421111111 12466777765543 34445667999999999988877
Q ss_pred HHhh
Q 027960 160 IAEK 163 (216)
Q Consensus 160 l~~~ 163 (216)
+.+.
T Consensus 291 l~~~ 294 (1257)
T KOG0430|consen 291 LRKL 294 (1257)
T ss_pred HHHH
Confidence 7654
No 104
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=27.25 E-value=1.6e+02 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v 107 (216)
.+.+||.++++..+++++|+-+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~ 42 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDV 42 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcce
Confidence 6899999999999999999633
No 105
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.04 E-value=1.2e+02 Score=18.85 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred eeEEeCCCCeEEecCC---CcHHHHHHHHHhhCC
Q 027960 135 EISIDAEAKTAWVQSG---ATVGQLNYRIAEKSQ 165 (216)
Q Consensus 135 ~i~id~~~~~v~v~aG---v~~~~l~~~l~~~g~ 165 (216)
.+++|...++++|..- +...++.+.+.+.|+
T Consensus 28 ~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 28 SVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4466777776666544 456999999998864
No 106
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=27.03 E-value=1.7e+02 Score=25.55 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v 107 (216)
.+.+||.++++..+++++|+-+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~ 42 (339)
T cd06604 21 YPEEEVREIADEFRERDIPCDA 42 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCcce
Confidence 4889999999999999999733
No 107
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=26.92 E-value=59 Score=24.42 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVRSGGHD 113 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ggGhs 113 (216)
...+++.+++..+.+.+-++.+.|.|||
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S 46 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHS 46 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchh
Confidence 3457777788888889999999999998
No 108
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=26.84 E-value=1e+02 Score=27.40 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=27.3
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.|- .|+.|.+.+|+..+++++.+..-|+.++
T Consensus 171 iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i~ 202 (355)
T PTZ00182 171 VPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFF 202 (355)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 554 6888999999999999999988899885
No 109
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=26.68 E-value=1.6e+02 Score=25.79 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=26.8
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKSGLQIRVRS 109 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~~~~~~v~g 109 (216)
+|. -++..-++|++.+++..+.+.++|+.+.|
T Consensus 257 ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 257 YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred CCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEE
Confidence 455 56667778899999999999999999987
No 110
>PRK02539 hypothetical protein; Provisional
Probab=26.20 E-value=38 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.8
Q ss_pred chHhhheeeEEEECCCCeeC
Q 027960 197 GVAADHIVDAHMIDAKGEKF 216 (216)
Q Consensus 197 G~~~D~v~~~~vV~~dG~iv 216 (216)
+.+.+++..++||+++|+.|
T Consensus 42 ~~~~~~L~~i~ivD~~G~dV 61 (85)
T PRK02539 42 RSVRHHIEGIKIVDEEGNDV 61 (85)
T ss_pred HHHHHHhccceEECCCCCCC
Confidence 55778999999999999754
No 111
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.85 E-value=1.2e+02 Score=25.79 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=31.2
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDL 114 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~ 114 (216)
.-...+.|.+++++.+.++.+.++ ..+.+..||=..
T Consensus 37 v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGP 72 (255)
T COG1058 37 LARITTVGDNPDRIVEALREASER-ADVVITTGGLGP 72 (255)
T ss_pred EEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCC
Confidence 335677899999999999999998 899999998774
No 112
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.27 E-value=3.1e+02 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.+.+||.++++..+++++|+-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i 43 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFPLDAA 43 (317)
T ss_pred CCHHHHHHHHHHHHHhCCCceEE
Confidence 58999999999999999997553
No 113
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.26 E-value=51 Score=30.29 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=34.4
Q ss_pred EEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCC------HHHHHHHHHHHHhcC-Cc--EEEEcCCCC
Q 027960 50 IYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFH------VSEIQAAIKCSKKSG-LQ--IRVRSGGHD 113 (216)
Q Consensus 50 v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~------~~dv~~~v~~a~~~~-~~--~~v~ggGhs 113 (216)
|..|.....++.+. .-..||+ .-..+++|.. .+|+.++|+.+++.+ +. +..||||+-
T Consensus 141 ITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi 206 (440)
T COG1570 141 ITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI 206 (440)
T ss_pred EcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH
Confidence 34444545555543 2234664 2356666655 579999999998876 44 555666653
No 114
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=25.24 E-value=92 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCcEEEEcC-CCCC
Q 027960 81 FIITPFHVSEIQAAIKCSKKSGLQIRVRSG-GHDL 114 (216)
Q Consensus 81 ~vv~P~~~~dv~~~v~~a~~~~~~~~v~gg-Ghs~ 114 (216)
+=+.|++.+-+...+++++.+++|+++... |+.+
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f 42 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVF 42 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEE
Confidence 345799999999999999999999998764 6654
No 115
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.22 E-value=95 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC
Q 027960 88 VSEIQAAIKCSKKSGLQIRVRSGGH 112 (216)
Q Consensus 88 ~~dv~~~v~~a~~~~~~~~v~ggGh 112 (216)
.+.++++++.+.+.+.++.+||=-.
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~ 34 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPD 34 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCC
Confidence 5789999999999999999999543
No 116
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.16 E-value=1.1e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.4
Q ss_pred EeCCHHHHHHHHHHHHhcCCcEEEE
Q 027960 84 TPFHVSEIQAAIKCSKKSGLQIRVR 108 (216)
Q Consensus 84 ~P~~~~dv~~~v~~a~~~~~~~~v~ 108 (216)
.+...+|+.++++.+++++.++...
T Consensus 56 ~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 56 YSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 3556788999999999999887654
No 117
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=25.16 E-value=97 Score=28.32 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=36.1
Q ss_pred cCCCCCCCccEEEEeCCHHHHHH------HHHHHHhcCCcEEEEcCCCCC
Q 027960 71 FSAPTNQKPLFIITPFHVSEIQA------AIKCSKKSGLQIRVRSGGHDL 114 (216)
Q Consensus 71 w~~~~~~~P~~vv~P~~~~dv~~------~v~~a~~~~~~~~v~ggGhs~ 114 (216)
++--...+|-++....+..|+++ +++.|++.++.+.|-|-||-.
T Consensus 222 lSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGHvP 271 (431)
T PRK13352 222 LSLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGHVP 271 (431)
T ss_pred eeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCC
Confidence 33335679999999999998887 457788999999999999964
No 118
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.03 E-value=69 Score=23.17 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcC
Q 027960 87 HVSEIQAAIKCSKKSGLQIRVRSG 110 (216)
Q Consensus 87 ~~~dv~~~v~~a~~~~~~~~v~gg 110 (216)
+.+|...++++|.++++.+++.|-
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESS
T ss_pred CCCCHHHHHHHHHHcCCCEEEECC
Confidence 778888899999999999999873
No 119
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.53 E-value=1.8e+02 Score=21.52 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=28.7
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCc
Q 027960 82 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSS 119 (216)
Q Consensus 82 vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~ 119 (216)
.+.|.+.+++++.++.+.+. ..+.+-.||.+......
T Consensus 39 ~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~ 75 (133)
T cd00758 39 GVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDV 75 (133)
T ss_pred eecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcc
Confidence 35689999999999888654 67889999988754433
No 120
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=24.52 E-value=4.2e+02 Score=25.56 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=48.6
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHh-cCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHH
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKK-SGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~-~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~ 155 (216)
.|. .|.+|.+..|+..++..|.. .+.|+..+..--+........ . +...+=+-+-.+.+.+.+.++.|+++.+
T Consensus 445 iPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~---~--~~igkg~~vl~~~~~dV~LiG~Gs~v~~ 519 (632)
T KOG0523|consen 445 IPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTE---I--EEIGKGKYVLQEVEPDVILIGTGSEVQE 519 (632)
T ss_pred CCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCc---h--hhhccccEEEecCCCCEEEEeccHHHHH
Confidence 665 57789999999999998865 566776665444422111111 0 0001101122334457899999999875
Q ss_pred HH---HHHHhhCC
Q 027960 156 LN---YRIAEKSQ 165 (216)
Q Consensus 156 l~---~~l~~~g~ 165 (216)
-+ +.|.+.|+
T Consensus 520 cl~AA~~L~~~gi 532 (632)
T KOG0523|consen 520 CLEAAELLSEDGI 532 (632)
T ss_pred HHHHHHHHHhcCc
Confidence 54 44555544
No 121
>PRK01546 hypothetical protein; Provisional
Probab=24.17 E-value=42 Score=23.25 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=15.9
Q ss_pred chHhhheeeEEEECCCCe
Q 027960 197 GVAADHIVDAHMIDAKGE 214 (216)
Q Consensus 197 G~~~D~v~~~~vV~~dG~ 214 (216)
+.+.+++.+++||+++|+
T Consensus 43 ~~~~~~L~~i~vvD~~G~ 60 (79)
T PRK01546 43 QNMLNELKGIKVVNEQGT 60 (79)
T ss_pred HHHHHHhccceEECCCCC
Confidence 567889999999999996
No 122
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=24.05 E-value=1.1e+02 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=23.1
Q ss_pred CCCccEEEEe---------CCHHHHHHHHHHHHhcCCcE
Q 027960 76 NQKPLFIITP---------FHVSEIQAAIKCSKKSGLQI 105 (216)
Q Consensus 76 ~~~P~~vv~P---------~~~~dv~~~v~~a~~~~~~~ 105 (216)
..-|..+++| -+++|+..+|+.....+.++
T Consensus 51 ~~gp~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl~~g~~v 89 (97)
T cd03062 51 KFAGNVIIYPKGDGIWYGRVTPEHVPPIVDRLILGGKII 89 (97)
T ss_pred CcCCEEEEEeCCCeeEEeecCHHHHHHHHHHHhcCCcCC
Confidence 3478888888 59999999998877655443
No 123
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=23.34 E-value=2.5e+02 Score=20.65 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG 116 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g 116 (216)
...+.|.+.+++.+.++.+.+ +..+.+-.||.+...
T Consensus 36 ~~~~v~Dd~~~I~~~l~~~~~-~~dliittGG~g~g~ 71 (135)
T smart00852 36 RYVIVPDDKEAIKEALREALE-RADLVITTGGTGPGP 71 (135)
T ss_pred EEEEeCCCHHHHHHHHHHHHh-CCCEEEEcCCCCCCC
Confidence 344558999999999988765 367888889888543
No 124
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=1.4e+02 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=27.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCce
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE 135 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~ 135 (216)
-+++.|++-+|.+++..+.+.. ..|+|||+.|..
T Consensus 76 iv~~ePr~yeda~~ia~~lk~~----------------------k~Vvinl~~m~~ 109 (167)
T COG1799 76 IVLLEPRKYEDAQEIADYLKNR----------------------KAVVINLQRMDP 109 (167)
T ss_pred EEEecCccHHHHHHHHHHHhcC----------------------ceEEEEeeeCCH
Confidence 4688999999999999988753 358888887765
No 125
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=23.21 E-value=1.7e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEeCCHHHHHHHHHHHHhcCCcEEE
Q 027960 83 ITPFHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 83 v~P~~~~dv~~~v~~a~~~~~~~~v 107 (216)
+.+.+.+|+.++++.+.+.+.|..+
T Consensus 127 v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 127 VTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp ESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred EccCCHHHHHHHHHHHHhCCCcEEE
Confidence 3344449999999999988887665
No 126
>PRK05899 transketolase; Reviewed
Probab=23.11 E-value=1.2e+02 Score=29.09 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=48.7
Q ss_pred Ccc-EEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCCCCCCCCccCCCCeEEEEccCCceeEEeCCCCeEEecCCCcHHH
Q 027960 78 KPL-FIITPFHVSEIQAAIKCSKKS-GLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQ 155 (216)
Q Consensus 78 ~P~-~vv~P~~~~dv~~~v~~a~~~-~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~ 155 (216)
.|. .|+.|.+.+|+..+++++.+. +-|+.+|=............+ .-.+... ...+........+..|....+
T Consensus 450 iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G---~~~l~~G~dvtiia~G~~v~~ 524 (624)
T PRK05899 450 IPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQ--EEGVAKG---GYVLRDDPDVILIATGSEVHL 524 (624)
T ss_pred CCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcCCccc--cccccCC---cEEEecCCCEEEEEeCHHHHH
Confidence 454 689999999999999999987 789998875443311100000 0011111 122333455677777877766
Q ss_pred HHH---HHHhhCC
Q 027960 156 LNY---RIAEKSQ 165 (216)
Q Consensus 156 l~~---~l~~~g~ 165 (216)
..+ .|+++|.
T Consensus 525 al~Aa~~L~~~gi 537 (624)
T PRK05899 525 ALEAADELEAEGI 537 (624)
T ss_pred HHHHHHHHHhcCC
Confidence 554 4445544
No 127
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=22.87 E-value=92 Score=22.08 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=26.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcE-EEEcCCCC
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQI-RVRSGGHD 113 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~-~v~ggGhs 113 (216)
.++++|...++|.++++.+--.+..+ .++|-|+.
T Consensus 2 ~aIir~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~ 36 (102)
T PF00543_consen 2 EAIIRPEKLEEVIEALREAGVPGMTVSEVRGRGRQ 36 (102)
T ss_dssp EEEEEGGGHHHHHHHHHHTTGSCEEEEEEEEESST
T ss_pred EEEEChhHHHHHHHHHHHCCCCeEEEEEeEEeccc
Confidence 47899999999999999887667665 56665664
No 128
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.80 E-value=1.1e+02 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCcEEEEcCCC
Q 027960 93 AAIKCSKKSGLQIRVRSGGH 112 (216)
Q Consensus 93 ~~v~~a~~~~~~~~v~ggGh 112 (216)
.-+++.+++|+|+.++-.|+
T Consensus 19 ~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 19 KQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred HHHHHHHHCCCeeEECCCCC
Confidence 45788899999999987765
No 129
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=22.34 E-value=1.1e+02 Score=28.70 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred eCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC
Q 027960 85 PFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL 117 (216)
Q Consensus 85 P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~ 117 (216)
|-++.|+..++...+..+.|+.+.|||--|++.
T Consensus 213 ~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A 245 (617)
T COG3962 213 PPDERELADAAALIKSAKKPLIVAGGGVLYSGA 245 (617)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCceeechH
Confidence 457899999999999999999999999877653
No 130
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.19 E-value=1.2e+02 Score=27.68 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCCCccEEEEeCCHHHHHH------HHHHHHhcCCcEEEEcCCCCC
Q 027960 75 TNQKPLFIITPFHVSEIQA------AIKCSKKSGLQIRVRSGGHDL 114 (216)
Q Consensus 75 ~~~~P~~vv~P~~~~dv~~------~v~~a~~~~~~~~v~ggGhs~ 114 (216)
...+|-++....+..|+++ +++.|++.++.+.+-|-||-.
T Consensus 223 DglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHvP 268 (423)
T TIGR00190 223 DGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGHVP 268 (423)
T ss_pred CCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCc
Confidence 5679999999999988887 557789999999999999964
No 131
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.03 E-value=2.4e+02 Score=23.60 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=36.8
Q ss_pred EcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Q 027960 51 YTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRS 109 (216)
Q Consensus 51 ~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~g 109 (216)
+.++...|.....+. ....|.+|+...+.+++..+++.+++.+.++.+.+
T Consensus 173 ~~~~~~d~~~~~~~~---------~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 173 FNAGDTDFSAQLTKI---------KAKNPDVIFLPGYYTEVGLIAKQARELGIKVPILG 222 (334)
T ss_pred ecCCCCcHHHHHHHH---------HhcCCCEEEEcCchhhHHHHHHHHHHcCCCCcEEe
Confidence 345556777665421 12378889999999999999999999988876665
No 132
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=21.75 E-value=80 Score=26.13 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE
Q 027960 86 FHVSEIQAAIKCSKKSGLQIRV 107 (216)
Q Consensus 86 ~~~~dv~~~v~~a~~~~~~~~v 107 (216)
.+.+|++++|+.|+++|++|.+
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhhhhhhhhccccccceEEE
Confidence 3689999999999999998765
No 133
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.22 E-value=2.3e+02 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=28.3
Q ss_pred CccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCC
Q 027960 78 KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGG 111 (216)
Q Consensus 78 ~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggG 111 (216)
.|.+|+...+..+...+++.+++.+++.......
T Consensus 188 ~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~~ 221 (341)
T cd06341 188 GADAIITVLDAAVCASVLKAVRAAGLTPKVVLSG 221 (341)
T ss_pred CCCEEEEecChHHHHHHHHHHHHcCCCCCEEEec
Confidence 6999999999999999999999998765554443
No 134
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=20.90 E-value=1.6e+02 Score=24.60 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCccEEEEeCCHHHHHHHHHHHHh---cCCcEEEEcCCCC
Q 027960 77 QKPLFIITPFHVSEIQAAIKCSKK---SGLQIRVRSGGHD 113 (216)
Q Consensus 77 ~~P~~vv~P~~~~dv~~~v~~a~~---~~~~~~v~ggGhs 113 (216)
-.++.++.|++.+|+-.+++..++ .+.|+...+-|..
T Consensus 148 DivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~ 187 (231)
T COG0710 148 DIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKT 187 (231)
T ss_pred CeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCC
Confidence 578899999999999999999987 5777777765544
No 135
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=20.77 E-value=1.4e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCeEEecCCCcHHHHHHHHHhhCCCceEecCCCCccc
Q 027960 142 AKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGV 178 (216)
Q Consensus 142 ~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~v 178 (216)
-.+++|.+|+.|.|+.+++..+. .+.+..|.-+++
T Consensus 317 vttv~vp~gvDw~dVv~~~~~~~--~vei~gglg~~~ 351 (385)
T KOG2862|consen 317 VTTVKVPYGVDWKDVVAYAMSHY--VVEIGGGLGPTV 351 (385)
T ss_pred ceeeecCCCCCHHHHHHHHHHhc--CEEeccccCCCc
Confidence 35799999999999999999885 456555554443
No 136
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=20.67 E-value=2e+02 Score=25.15 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=32.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCc
Q 027960 80 LFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSS 119 (216)
Q Consensus 80 ~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~ 119 (216)
...+.|.+.+++.+.++.+.+.+..+.+..||.+......
T Consensus 197 ~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~~D~ 236 (312)
T cd03522 197 EQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDPDDV 236 (312)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccCCcch
Confidence 3456699999999999988877788999999999765544
No 137
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.09 E-value=1.9e+02 Score=24.37 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=38.3
Q ss_pred EEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcC
Q 027960 50 IYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSG 110 (216)
Q Consensus 50 v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~gg 110 (216)
-|.+++.+|...+.+- ....|.+|+.....++...+++.+++.+++..+.++
T Consensus 173 ~~~~~~~d~~~~v~~l---------~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 224 (312)
T cd06346 173 AHEEGKSSYSSEVAAA---------AAGGPDALVVIGYPETGSGILRSAYEQGLFDKFLLT 224 (312)
T ss_pred eeCCCCCCHHHHHHHH---------HhcCCCEEEEecccchHHHHHHHHHHcCCCCceEee
Confidence 3556677777665421 134799999998889999999999999887666654
No 138
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=20.03 E-value=1.4e+02 Score=20.06 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCeEEecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhcccc
Q 027960 141 EAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSG 186 (216)
Q Consensus 141 ~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~g 186 (216)
+.+...|.+-+++.++.+.+ ++.++.. ..-|+||++..
T Consensus 4 ~~~~~~v~G~~~l~~l~~~~------~~~l~~~--~~~Tl~G~i~~ 41 (81)
T PF03471_consen 4 DDGTYIVSGSTPLDDLNELL------GLDLPEE--DYDTLGGLILE 41 (81)
T ss_dssp TTSEEEEETTSBHHHHHHHH------TS-TTTT--TTSBHHHHHHH
T ss_pred cCCEEEEEecCCHHHHHHHH------CcCCCcc--chhhHHHHHHH
Confidence 35678999999999998776 3455552 44589998864
Done!