Query 027961
Match_columns 216
No_of_seqs 121 out of 443
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 1.5E-82 3.2E-87 524.5 14.9 209 4-215 3-211 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.7E-80 3.7E-85 535.2 23.2 209 6-215 1-209 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.1E-76 2.3E-81 510.7 20.9 207 6-215 1-207 (236)
4 KOG0841 Multifunctional chaper 100.0 1.1E-72 2.4E-77 477.5 18.5 208 5-215 1-209 (247)
5 PF13424 TPR_12: Tetratricopep 96.8 0.0035 7.6E-08 43.7 5.6 56 150-207 21-76 (78)
6 KOG1840 Kinesin light chain [C 95.3 2 4.4E-05 41.3 17.9 188 7-209 200-399 (508)
7 PF12862 Apc5: Anaphase-promot 94.5 0.36 7.7E-06 35.4 8.2 74 134-213 3-77 (94)
8 TIGR00990 3a0801s09 mitochondr 93.0 5.6 0.00012 38.5 15.9 53 150-204 483-535 (615)
9 PF13414 TPR_11: TPR repeat; P 87.7 3.2 6.9E-05 27.6 6.5 47 150-205 19-66 (69)
10 KOG1840 Kinesin light chain [C 87.0 31 0.00066 33.4 17.0 180 8-205 285-478 (508)
11 PF04781 DUF627: Protein of un 84.4 3.6 7.8E-05 31.7 5.9 87 106-204 16-105 (111)
12 PF13374 TPR_10: Tetratricopep 81.7 1.5 3.3E-05 26.0 2.4 24 150-173 18-41 (42)
13 PF13424 TPR_12: Tetratricopep 80.9 4.9 0.00011 27.4 5.2 38 172-211 1-38 (78)
14 KOG4162 Predicted calmodulin-b 79.0 78 0.0017 32.2 15.3 71 127-206 436-507 (799)
15 PF13431 TPR_17: Tetratricopep 72.8 4 8.7E-05 24.2 2.4 34 156-198 1-34 (34)
16 PF13174 TPR_6: Tetratricopept 67.7 11 0.00024 20.9 3.6 27 8-34 2-28 (33)
17 TIGR02917 PEP_TPR_lipo putativ 66.0 1.3E+02 0.0028 29.0 16.8 27 8-34 705-731 (899)
18 PF13181 TPR_8: Tetratricopept 64.9 17 0.00036 20.5 4.0 27 8-34 3-29 (34)
19 PF01765 RRF: Ribosome recycli 64.0 37 0.00079 27.5 7.2 73 40-113 85-157 (165)
20 KOG4759 Ribosome recycling fac 63.9 36 0.00078 30.1 7.4 71 40-113 183-253 (263)
21 PF14559 TPR_19: Tetratricopep 63.5 27 0.0006 22.7 5.4 46 151-205 8-53 (68)
22 PRK09782 bacteriophage N4 rece 63.5 2E+02 0.0043 30.2 15.8 26 9-34 512-537 (987)
23 PF07719 TPR_2: Tetratricopept 62.7 19 0.0004 20.1 3.9 26 9-34 4-29 (34)
24 PF13371 TPR_9: Tetratricopept 61.2 22 0.00048 23.6 4.7 46 151-205 12-57 (73)
25 PRK14720 transcript cleavage f 60.8 45 0.00098 34.5 8.5 91 107-209 88-181 (906)
26 PF13176 TPR_7: Tetratricopept 60.8 18 0.0004 21.3 3.7 26 9-34 2-27 (36)
27 CHL00033 ycf3 photosystem I as 59.9 41 0.00088 26.5 6.7 50 150-205 51-100 (168)
28 COG0233 Frr Ribosome recycling 59.0 47 0.001 27.9 6.9 73 40-113 105-177 (187)
29 TIGR02521 type_IV_pilW type IV 58.2 87 0.0019 24.4 17.8 57 7-68 32-88 (234)
30 PF12895 Apc3: Anaphase-promot 56.7 22 0.00049 24.6 4.2 45 156-203 40-84 (84)
31 PF13374 TPR_10: Tetratricopep 56.3 37 0.00081 19.6 4.7 32 178-210 4-35 (42)
32 TIGR02795 tol_pal_ybgF tol-pal 55.2 46 0.001 23.6 5.8 50 151-206 56-105 (119)
33 PF13428 TPR_14: Tetratricopep 54.9 33 0.00071 21.0 4.3 27 8-34 3-29 (44)
34 cd00520 RRF Ribosome recycling 53.7 48 0.001 27.3 6.3 73 40-113 99-171 (179)
35 TIGR00496 frr ribosome recycli 53.6 57 0.0012 27.0 6.6 73 40-113 94-166 (176)
36 PF12569 NARP1: NMDA receptor- 52.9 2.2E+02 0.0049 27.5 18.0 61 144-205 156-222 (517)
37 PRK02603 photosystem I assembl 52.4 68 0.0015 25.4 6.9 50 150-205 51-100 (172)
38 PF12895 Apc3: Anaphase-promot 52.2 18 0.00039 25.1 3.0 45 151-202 6-50 (84)
39 PRK00083 frr ribosome recyclin 52.1 61 0.0013 27.0 6.7 73 40-113 103-175 (185)
40 PF05010 TACC: Transforming ac 50.0 1.1E+02 0.0023 26.1 7.9 84 11-110 123-206 (207)
41 PF13432 TPR_16: Tetratricopep 48.4 52 0.0011 21.3 4.7 41 11-55 2-42 (65)
42 PF00515 TPR_1: Tetratricopept 44.3 55 0.0012 18.3 3.9 26 9-34 4-29 (34)
43 PF12688 TPR_5: Tetratrico pep 43.9 1.4E+02 0.003 22.9 7.1 50 151-206 18-67 (120)
44 PF13432 TPR_16: Tetratricopep 43.7 87 0.0019 20.1 5.9 46 151-205 14-59 (65)
45 TIGR02917 PEP_TPR_lipo putativ 43.6 3E+02 0.0066 26.4 18.1 26 9-34 468-493 (899)
46 TIGR00990 3a0801s09 mitochondr 43.4 3.1E+02 0.0067 26.4 18.2 50 150-208 524-573 (615)
47 PRK11447 cellulose synthase su 42.0 4.4E+02 0.0096 27.8 17.7 27 8-34 114-140 (1157)
48 KOG1126 DNA-binding cell divis 41.5 42 0.00091 33.3 4.6 68 128-204 483-550 (638)
49 cd05804 StaR_like StaR_like; a 39.4 2.6E+02 0.0055 24.3 12.7 29 175-204 185-213 (355)
50 PLN03088 SGT1, suppressor of 39.0 1E+02 0.0022 28.0 6.5 24 180-204 74-97 (356)
51 CHL00033 ycf3 photosystem I as 38.9 1.2E+02 0.0026 23.7 6.3 48 150-205 88-141 (168)
52 PRK10049 pgaA outer membrane p 37.6 4.4E+02 0.0095 26.4 15.4 25 10-34 87-111 (765)
53 PRK15359 type III secretion sy 36.6 1.5E+02 0.0032 22.9 6.4 47 150-205 74-120 (144)
54 TIGR02795 tol_pal_ybgF tol-pal 36.0 1.3E+02 0.0028 21.1 5.7 49 151-205 19-67 (119)
55 TIGR02552 LcrH_SycD type III s 35.5 1.5E+02 0.0032 21.8 6.1 47 151-206 68-114 (135)
56 TIGR02521 type_IV_pilW type IV 34.5 1.4E+02 0.0031 23.1 6.1 25 180-205 173-197 (234)
57 PF03755 YicC_N: YicC-like fam 34.2 65 0.0014 25.8 4.0 59 153-211 83-145 (159)
58 COG3063 PilF Tfp pilus assembl 34.0 59 0.0013 28.5 3.9 47 150-205 85-131 (250)
59 PF08424 NRDE-2: NRDE-2, neces 32.0 1.7E+02 0.0037 26.1 6.8 57 150-207 118-184 (321)
60 smart00028 TPR Tetratricopepti 31.3 75 0.0016 15.7 3.5 26 9-34 4-29 (34)
61 PRK10370 formate-dependent nit 30.9 2.4E+02 0.0052 23.1 7.1 15 190-204 157-171 (198)
62 PF08631 SPO22: Meiosis protei 30.5 1.7E+02 0.0037 25.4 6.4 56 150-206 9-65 (278)
63 cd02683 MIT_1 MIT: domain cont 30.3 1.5E+02 0.0032 21.0 4.9 28 7-34 7-34 (77)
64 TIGR03302 OM_YfiO outer membra 30.0 1.8E+02 0.0039 23.7 6.2 49 157-206 49-99 (235)
65 PRK11189 lipoprotein NlpI; Pro 29.8 1.7E+02 0.0036 25.6 6.2 15 20-34 40-54 (296)
66 TIGR03504 FimV_Cterm FimV C-te 29.2 1.1E+02 0.0023 19.4 3.6 40 10-51 3-42 (44)
67 PF09986 DUF2225: Uncharacteri 29.2 3.5E+02 0.0075 22.8 7.9 69 130-204 124-192 (214)
68 KOG2002 TPR-containing nuclear 28.9 1.3E+02 0.0029 31.4 6.0 49 155-207 250-300 (1018)
69 PRK15326 type III secretion sy 28.5 1.5E+02 0.0032 21.6 4.6 45 150-197 20-68 (80)
70 PF06552 TOM20_plant: Plant sp 28.2 1.8E+02 0.004 24.4 5.8 70 135-212 36-111 (186)
71 PF10083 DUF2321: Uncharacteri 28.0 3.4E+02 0.0073 22.2 7.8 33 24-59 83-115 (158)
72 PF14490 HHH_4: Helix-hairpin- 26.2 1.2E+02 0.0026 22.0 4.0 48 127-186 38-86 (94)
73 PF09324 DUF1981: Domain of un 25.9 2.5E+02 0.0054 20.1 6.3 35 41-75 29-67 (86)
74 PF12083 DUF3560: Domain of un 25.0 88 0.0019 24.6 3.2 28 149-177 21-48 (126)
75 PRK11447 cellulose synthase su 24.9 8.4E+02 0.018 25.8 16.2 56 11-71 356-411 (1157)
76 KOG4507 Uncharacterized conser 24.9 70 0.0015 31.9 3.1 42 124-182 220-261 (886)
77 cd02682 MIT_AAA_Arch MIT: doma 24.9 1.4E+02 0.003 21.3 3.9 27 8-34 8-34 (75)
78 PF10516 SHNi-TPR: SHNi-TPR; 24.7 86 0.0019 19.3 2.5 37 132-171 2-38 (38)
79 PRK10803 tol-pal system protei 24.3 2.4E+02 0.0053 24.5 6.2 50 155-205 194-245 (263)
80 TIGR02105 III_needle type III 23.6 2.4E+02 0.0051 19.9 4.9 36 148-186 12-51 (72)
81 cd02678 MIT_VPS4 MIT: domain c 23.1 1.5E+02 0.0033 20.5 3.9 28 7-34 7-34 (75)
82 PF00901 Orbi_VP5: Orbivirus o 22.8 3.9E+02 0.0085 25.9 7.5 71 21-95 120-193 (508)
83 smart00745 MIT Microtubule Int 22.6 1.6E+02 0.0035 20.1 3.9 27 8-34 10-36 (77)
84 PF14689 SPOB_a: Sensor_kinase 22.6 1.8E+02 0.0039 19.5 4.0 24 11-34 28-51 (62)
85 PRK15363 pathogenicity island 22.5 4.3E+02 0.0092 21.5 7.1 52 146-210 81-132 (157)
86 KOG4626 O-linked N-acetylgluco 22.5 40 0.00086 33.9 0.9 46 151-205 269-314 (966)
87 cd05493 Bromo_ALL-1 Bromodomai 22.1 97 0.0021 24.6 2.9 37 96-132 75-118 (131)
88 PF12603 DUF3770: Protein of u 22.0 3E+02 0.0065 24.2 6.2 95 4-117 3-106 (250)
89 PRK10049 pgaA outer membrane p 22.0 8.1E+02 0.018 24.5 16.1 26 9-34 52-77 (765)
90 KOG0687 26S proteasome regulat 21.7 5.1E+02 0.011 24.1 7.7 78 130-210 53-137 (393)
91 PF00244 14-3-3: 14-3-3 protei 21.7 3E+02 0.0065 23.5 6.2 59 93-164 140-203 (236)
92 cd02656 MIT MIT: domain contai 21.5 2.8E+02 0.006 18.9 6.2 27 8-34 8-34 (75)
93 PRK12370 invasion protein regu 20.9 2.5E+02 0.0054 26.9 6.0 15 190-204 419-433 (553)
94 PHA02103 hypothetical protein 20.8 33 0.0007 26.5 -0.0 14 130-143 78-91 (135)
95 PF04212 MIT: MIT (microtubule 20.8 2.1E+02 0.0045 19.2 4.1 27 8-34 7-33 (69)
96 PLN03098 LPA1 LOW PSII ACCUMUL 20.7 3.4E+02 0.0074 26.0 6.7 51 150-206 91-141 (453)
97 COG4235 Cytochrome c biogenesi 20.4 3.2E+02 0.0069 24.6 6.1 79 105-204 141-220 (287)
98 PRK15179 Vi polysaccharide bio 20.2 9E+02 0.019 24.4 12.3 29 6-34 86-114 (694)
99 KOG1107 Membrane coat complex 20.2 2.2E+02 0.0049 28.7 5.5 42 150-191 656-698 (760)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-82 Score=524.47 Aligned_cols=209 Identities=64% Similarity=0.992 Sum_probs=204.4
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhh
Q 027961 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (216)
Q Consensus 4 ~~r~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~ 83 (216)
..|++.+|+|+|++|||||+||++.||.++. . +.+|+.+|||||||||||+||+||+|||++++++||++++|++.+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas--~-~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~q 79 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVAS--S-GQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQ 79 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhH
Confidence 3599999999999999999999999999996 3 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 027961 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (216)
Q Consensus 84 ~~~i~~yr~ki~~EL~~~c~eil~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (216)
+.+|++||++|++||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.++++.+.+.++|+.|.++
T Consensus 80 v~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Asei 159 (268)
T COG5040 80 VELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEI 159 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcCCCC
Q 027961 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLVSPFLG 215 (216)
Q Consensus 164 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~~~l~ 215 (216)
|..+||||||||||||||||||||||+|+|++||-+||+|||+||+++|+|.
T Consensus 160 A~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLS 211 (268)
T COG5040 160 ATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLS 211 (268)
T ss_pred hhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999984
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.7e-80 Score=535.21 Aligned_cols=209 Identities=70% Similarity=1.063 Sum_probs=200.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHH
Q 027961 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (216)
Q Consensus 6 r~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~ 85 (216)
|++++|+||+++|||||+||+.+||++++. .++.+||.||||||||||||+||++|+|||+|++++++++.+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~-~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKT-VDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhh-cCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 689999999999999999999999999982 1225999999999999999999999999999999999988788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 027961 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (216)
Q Consensus 86 ~i~~yr~ki~~EL~~~c~eil~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (216)
.+++||++|++||..+|++|+++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcCCCC
Q 027961 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLVSPFLG 215 (216)
Q Consensus 166 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~~~l~ 215 (216)
++|||||||||||+||||||||||+++|++||++|++|||+||+.++.|.
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ 209 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLG 209 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999999999999999999874
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.1e-76 Score=510.70 Aligned_cols=207 Identities=62% Similarity=0.966 Sum_probs=197.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHH
Q 027961 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (216)
Q Consensus 6 r~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~ 85 (216)
|++++|+||+++|||||+||+++||++++ . +++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--M-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--T-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--c-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999998 4 59999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 027961 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (216)
Q Consensus 86 ~i~~yr~ki~~EL~~~c~eil~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (216)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcCCCC
Q 027961 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLVSPFLG 215 (216)
Q Consensus 166 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~~~l~ 215 (216)
++||||||+||||+||||||||||+|++++||+||++|||+|++.++.|+
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~ 207 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLS 207 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccc
Confidence 89999999999999999999999999999999999999999999999874
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-72 Score=477.51 Aligned_cols=208 Identities=67% Similarity=1.005 Sum_probs=203.2
Q ss_pred cHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhH
Q 027961 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (216)
Q Consensus 5 ~r~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~ 84 (216)
+|+++|++|++++|+|||+||+.+||.+++ . +.+||.||||||||+|||+|+++|+|||+|+++|||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~-~--~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE-L--DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc-c--chhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 3 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 027961 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (216)
Q Consensus 85 ~~i~~yr~ki~~EL~~~c~eil~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (216)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||.+|++|++++++++++|+.|.++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcCCCC
Q 027961 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLVSPFLG 215 (216)
Q Consensus 164 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~~~l~ 215 (216)
++..|+|||||||||+||||||||||++.|++||.|||+|||+||.++|+|+
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~ 209 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLS 209 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999996
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0035 Score=43.71 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (216)
-++|.+.|++|+++ .+.+++.||...-...|.+..++. +|+.++|.+..++|++-.
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 46789999999999 568999999888888999999887 899999999999998753
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.33 E-value=2 Score=41.29 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhc--cCCC-CCCCHH-HHHHHHHHHHHhhhhhhHHHHHHHh-HhhhhhccCc-
Q 027961 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS--STPA-TELTVE-ERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKN- 80 (216)
Q Consensus 7 ~~li~~Aklaeq~ery~Dm~~~mk~~~~~--~~~~-~~Ls~e-ERnLlsvayKn~i~~~R~s~r~l~~-~eqk~~~~~~- 80 (216)
..+.++|.+..+.|+|+.++...++.+++ ++.| ..+-.. ..+-|++.|-+ .+..+.|..+... +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999998863 1110 122222 34446666655 3455666666642 3334444443
Q ss_pred -hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHHH
Q 027961 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (216)
Q Consensus 81 -~~~~~~i~~-----yr~ki~~EL~~~c~eil~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (216)
+.....+.+ ++.-=-.|-...|+.+++|..+.+ .+..++-.-- +.++..-.....-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333333332 334445788899999999998833 3333332211 222222222222367889
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 027961 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRL 209 (216)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~ 209 (216)
..|+.|+++....+.+.||.-=|.--|+++.|+- +|..++|-++.++|+....+
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHh
Confidence 9999999999988999999999999999999986 89999999999999876644
No 7
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.45 E-value=0.36 Score=35.40 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=54.2
Q ss_pred chhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 027961 134 YRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQEKTLTRLVSP 212 (216)
Q Consensus 134 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~~ 212 (216)
.+|+--+..++ -..|.+.....++.+..+..+.++..+..+ ||.+.+++. +|++++|+...++|.+-|.+.-|
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHCC
Confidence 35555454444 345777788888888777776654455544 888888887 79999999999999999887665
Q ss_pred C
Q 027961 213 F 213 (216)
Q Consensus 213 ~ 213 (216)
.
T Consensus 77 ~ 77 (94)
T PF12862_consen 77 R 77 (94)
T ss_pred H
Confidence 3
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.01 E-value=5.6 Score=38.49 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (216)
.+.|...|++|+++.. ..++.++..++ .+|.+..+|+-.++.++|.++..+|.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456666666665532 12223322222 23444444554566666666655553
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.67 E-value=3.2 Score=27.57 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~-~~~~A~~iAk~Afd 205 (216)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 45689999999875 34444578888888887 67 79999988888764
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=86.96 E-value=31 Score=33.37 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhccCC-CCCCCHHHHHHHHHH---------HHHhhhhhhHHHHHHHhHhhhhhc
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTP-ATELTVEERNLLSVA---------YKNVIGSLRAAWRIISSIEQKEEG 77 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~-~~~Ls~eERnLlsva---------yKn~i~~~R~s~r~l~~~eqk~~~ 77 (216)
-+..+|.++-..|+|+++-.+++.++++... .+....+=-..|+.. |...+.=.+.+.+++. +....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g~ 361 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPGE 361 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhccc
Confidence 4667888888899999999999988864410 012223322222211 2223333333333332 22111
Q ss_pred cC-ch--hhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHH
Q 027961 78 RK-NE--EHVSLVKDYRS-KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENT 153 (216)
Q Consensus 78 ~~-~~--~~~~~i~~yr~-ki~~EL~~~c~eil~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 153 (216)
.. +. .+.++-.-|.. -=.+|=..+-..+|++..... ...+...-.+++.|-.+|+|-- -...|
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k-----------~~~~a 428 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELK-----------KYEEA 428 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhc-----------ccchH
Confidence 10 00 01112122221 223555666777777765544 2223445567788877775432 24557
Q ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 154 MLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 154 ~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.|.+|..+. ....|.||--++..+|.+.- |+-+|+.++|++++.....
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHH
Confidence 89999999999 78999999999999999886 4568999999999987753
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.37 E-value=3.6 Score=31.72 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccch-hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH--
Q 027961 106 LKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGD-ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNF-- 182 (216)
Q Consensus 106 l~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~-- 182 (216)
+++|.+.+... ...++..|-....|+.+..+|....+. -+....-.|.+||.+|.. |+|..+.-|=..-+-
T Consensus 16 L~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-----Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 16 LEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-----LSPDSAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-----cChhHHHHHHHHHHHhh
Confidence 44555544332 223333477899999999999987665 566678889999999975 444444433333333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 027961 183 SVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 183 SVF~yEi~~~~~~A~~iAk~Af 204 (216)
||-||+ ++..-||+++
T Consensus 90 s~~~Yk------k~v~kak~~L 105 (111)
T PF04781_consen 90 SVKYYK------KAVKKAKRGL 105 (111)
T ss_pred hHHHHH------HHHHHHHHHh
Confidence 333333 5555555553
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.68 E-value=1.5 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHP 173 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p 173 (216)
.+.|...|++|+++.++-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 467899999999999988899998
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=80.91 E-value=4.9 Score=27.38 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 027961 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLVS 211 (216)
Q Consensus 172 ~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~~ 211 (216)
||.......|.+..|++ +|+.++|+..-++|.+- .+.+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888899999999997 89999999999999987 4443
No 14
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=79.04 E-value=78 Score=32.16 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=54.8
Q ss_pred hhhhcccchhhhhccc-chhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 127 LKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 127 ~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
+++-|=.|-..|-..+ .++|+....++.++|++|.+ +.|+|| -...+.|++|-+ .++.+.|.+.++.+..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP---LVIFYLALQYAE-QRQLTSALDYAREALA 506 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 5667877777776544 45788888999999999974 678999 334566777665 7999999999999876
Q ss_pred H
Q 027961 206 L 206 (216)
Q Consensus 206 ~ 206 (216)
-
T Consensus 507 l 507 (799)
T KOG4162|consen 507 L 507 (799)
T ss_pred h
Confidence 4
No 15
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.83 E-value=4 Score=24.20 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 027961 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (216)
Q Consensus 156 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ 198 (216)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 3667764 446665 456788898886 799999863
No 16
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.75 E-value=11 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=65.99 E-value=1.3e+02 Score=28.95 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-...++.+..+.|+|++++..+++++.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345567777777888888888877775
No 18
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.91 E-value=17 Score=20.51 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=64.04 E-value=37 Score=27.52 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|.+|.|-|.-+..-.|......|.++|.+..--.+.-.+ .......-++-..+.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999986433221100 0000012345556677777777777777776543
No 20
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=63.93 E-value=36 Score=30.08 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|+.|.|-|.-|+...+......|.|+|-+..---+...+... ..-++--.+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999886433232211111 02245557788888888888888888765
No 21
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.53 E-value=27 Score=22.71 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+.+++..
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 4567777777643 34445555667778887 7999999998776544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=63.45 E-value=2e+02 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
.+.+|.+..+.|+|++++...+++..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34456666667777777777766553
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=62.66 E-value=19 Score=20.14 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56788999999999999999999987
No 24
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=61.22 E-value=22 Score=23.55 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
+.|.++++.++. .+|-...+-++.+.+++. +|+.++|.....++.+
T Consensus 12 ~~A~~~~~~~l~--------~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 12 EEALEVLERALE--------LDPDDPELWLQRARCLFQ-LGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHHHH--------hCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 345555555543 245556677788888887 7999999888777664
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=60.83 E-value=45 Score=34.53 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=57.0
Q ss_pred HHhhhccCCCCCCCchHhHHhhhhcccchhh-hhcccch--hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 027961 107 KLLDSHLVPSATAGESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFS 183 (216)
Q Consensus 107 ~lid~~Lip~~~~~eskvfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~S 183 (216)
+++|. .|...+.....||++..|||+.-. |-+.-+. ++-.-.++|..+|+++++ +.|.||. +||+=
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~ 156 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-----ADRDNPE----IVKKL 156 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCcccHH----HHHHH
Confidence 55553 344444566778888888876433 2222221 222235678888998885 4478874 55554
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 027961 184 VFYYEILNSSEKACTMAKQEKTLTRL 209 (216)
Q Consensus 184 VF~yEi~~~~~~A~~iAk~Afd~ai~ 209 (216)
-|+|.-. +.++|.+++++|+.--|.
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4444445 999999999999876553
No 26
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.78 E-value=18 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 27
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=59.90 E-value=41 Score=26.48 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+....+|..
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 456788888888763 2333334456777777665 7999999998888764
No 28
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=58.98 E-value=47 Score=27.95 Aligned_cols=73 Identities=25% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|+||.|-|.=|.--.|...-.-|.|.|-+.---... -+........-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988899998885211110 0000001113356667778888888888888888765
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=58.17 E-value=87 Score=24.35 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 027961 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRII 68 (216)
Q Consensus 7 ~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l 68 (216)
+-...++...-..|+|++++..+.+.++ . .+-+..-...++..|-.. +....+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~-~---~p~~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE-H---DPDDYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-h---CcccHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3456778888889999999999999886 2 233444445555555432 3333444444
No 30
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=56.68 E-value=22 Score=24.59 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027961 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQE 203 (216)
Q Consensus 156 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~A 203 (216)
-|.+|+++.++ .+.+|..+....-++--+++ +|+.++|+..-++|
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhcC
Confidence 36677777654 44555555555555555665 89999999876654
No 31
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=56.27 E-value=37 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 027961 178 LALNFSVFYYEILNSSEKACTMAKQEKTLTRLV 210 (216)
Q Consensus 178 L~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~ 210 (216)
..-|.+..|+. .|+.++|..+..+|+.-....
T Consensus 4 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRA-QGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHh-hhhcchhhHHHHHHHHHHHHH
Confidence 35577888887 599999999999998765543
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=55.23 E-value=46 Score=23.55 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
+.|.+.|+.+.. +.|.||......++.+..++. +++.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 456777777764 346776555556666666665 89999999998887765
No 33
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.90 E-value=33 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-...+|+...+.|+++++.+..+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 34
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=53.74 E-value=48 Score=27.35 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|++|.|-|.=|....|...-..|.++|.+..--.+.- +........-++-.++.++|+..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998899998888888888753111110 000000001234445566666666666666666544
No 35
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=53.60 E-value=57 Score=26.96 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|+||.|-|.=|.-..|...-.-|.++|-+..---+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888998888853111100 000000011244555666777777777666666554
No 36
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=52.89 E-value=2.2e+02 Score=27.51 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 144 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.++..+++.-...|...++... .++ +..|.-+--++.|---+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4556667666666666554332 233 235777777788877889999999999987766544
No 37
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=52.39 E-value=68 Score=25.37 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.|...|++|+++.. .+|-..-...|.++-++. +|+.++|+....+|++
T Consensus 51 ~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 51 YAEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 3467888888887542 233233456777777776 7999999998877765
No 38
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=52.21 E-value=18 Score=25.11 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~ 202 (216)
+.|...|+++++.. |++| .-...++.+.-||. .|+.++|+.+.++
T Consensus 6 ~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~-~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 6 ENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQ-QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHH-TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44556666665443 3455 55567777888887 7999999999876
No 39
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=52.10 E-value=61 Score=26.98 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027961 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (216)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~L 113 (216)
|+||.|-|.=|....|...-.-|.++|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888889988885321111000 0000011244445666677777666666666544
No 40
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=50.00 E-value=1.1e+02 Score=26.14 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHH
Q 027961 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDY 90 (216)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~y 90 (216)
|++++..+-.||+-+-.....-+ +..++|..-+-..++.-+...+..+|--.. +- .+.... -+-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~---~~----~SLe~~--LeQ 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEM---KV----QSLEES--LEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HH----HHHHHH--HHH
Confidence 66777777777776654443322 234566666666677777777777766421 00 000000 011
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027961 91 RSKVESELSDVCGSILKLLD 110 (216)
Q Consensus 91 r~ki~~EL~~~c~eil~lid 110 (216)
+.+=.+||..||+|+|.=++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22334899999999887543
No 41
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.42 E-value=52 Score=21.26 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH
Q 027961 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYK 55 (216)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayK 55 (216)
.+|...-+.|+|++++..+++++. . .+-+.+=+..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~-~---~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK-Q---DPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC-C---STTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH-H---CCCCHHHHHHHHHHHH
Confidence 467888899999999999999997 2 2335555666666554
No 42
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=44.28 E-value=55 Score=18.29 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+..++.+..+.++|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45678889999999999999999997
No 43
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=43.91 E-value=1.4e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
+.|...|++|+.. .| +.|.|-+..++.+--+- .+|++++|+.+-+++...
T Consensus 18 ~~Ai~~Y~~Al~~---gL--~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GL--SGADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CC--CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5678888888652 33 34555556666655544 479999999888877654
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=43.73 E-value=87 Score=20.14 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
+.|...|++++. .+|-.-..-+..+..++. .|++++|...-+++.+
T Consensus 14 ~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQALK--------QDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 456666666652 335555566667777775 8999999977666654
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=43.64 E-value=3e+02 Score=26.39 Aligned_cols=26 Identities=4% Similarity=-0.012 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
...++.+..+.|++++++.++.++++
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34455555566666666666665554
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=43.41 E-value=3.1e+02 Score=26.43 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTR 208 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai 208 (216)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|.+-+.
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhc
Confidence 3456666776664 4566654 23344555555 8999999998888766554
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=41.98 E-value=4.4e+02 Score=27.80 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
..+.+|++.-..|+|++++..++++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 457889999999999999999999986
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.48 E-value=42 Score=33.27 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=45.5
Q ss_pred hhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027961 128 KMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 128 KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (216)
++-++.||-+.....---|++--+.|+-.|+.|++ +||.-.-+.--.+.++.. +|..++|+++-++|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 55666666665554433444445566666666653 455555666666777776 899999999999886
No 49
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=39.39 E-value=2.6e+02 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027961 175 RLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 175 rLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (216)
+....++.+.++.+ .|+.++|..+.+++.
T Consensus 185 ~~~~~~~la~~~~~-~G~~~~A~~~~~~~~ 213 (355)
T cd05804 185 RGHNWWHLALFYLE-RGDYEAALAIYDTHI 213 (355)
T ss_pred hHHHHHHHHHHHHH-CCCHHHHHHHHHHHh
Confidence 34445566666555 678888777777663
No 50
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=38.96 E-value=1e+02 Score=27.96 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 027961 180 LNFSVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 180 LN~SVF~yEi~~~~~~A~~iAk~Af 204 (216)
++.++.++. +|+.+.|+...++|.
T Consensus 74 ~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 74 LRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 333444443 455555555444443
No 51
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=38.93 E-value=1.2e+02 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH------HHhCCHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------Ei~~~~~~A~~iAk~Afd 205 (216)
.+.|...|+.|+.+ .|.+ .+...|.++.++ .-+|+.+.|....++|+.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 45688888888864 3333 233445555555 137888887766665543
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=37.55 E-value=4.4e+02 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 10 VYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 10 i~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
..+|.+.-..|++++++..+++++.
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444445555555555555544
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=36.65 E-value=1.5e+02 Score=22.93 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.|..+|+.|+. +.|.||- ...|.++-+. -+|++++|+....+|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4568899999875 4566652 2233333334 38999999987777754
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=36.03 E-value=1.3e+02 Score=21.09 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
+.|.+.|+++.. ..|.+|......++.+..++. .|+.+.|+...+.+..
T Consensus 19 ~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 19 ADAIQAFQAFLK-----KYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHH-----HCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 446666666653 235555444455667777776 7999999999888765
No 55
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=35.49 E-value=1.5e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
..|...|++++.+ .|.+ .....+.+..++ ..|+.++|+..-++++..
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4567777777653 3444 344466677655 479999999988877654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=34.46 E-value=1.4e+02 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 180 LNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 180 LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.+..++. .|+.++|+...+++.+
T Consensus 173 ~~la~~~~~-~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 173 LELAELYYL-RGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 344444443 5666666555555443
No 57
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=34.22 E-value=65 Score=25.83 Aligned_cols=59 Identities=17% Similarity=0.034 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHH-HHHH-HHH--hCCHHHHHHHHHHHHHHHHhhc
Q 027961 153 TMLSYKAAQDIALTDLAPTHPIRLGLALNF-SVFY-YEI--LNSSEKACTMAKQEKTLTRLVS 211 (216)
Q Consensus 153 a~~aY~~A~~~a~~~L~pt~pirLgL~LN~-SVF~-yEi--~~~~~~A~~iAk~Afd~ai~~~ 211 (216)
...+|-+++.-..+.++...|+.+...|.+ .||. .+- ....+..-.....++++|+..+
T Consensus 83 l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l 145 (159)
T PF03755_consen 83 LAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDEL 145 (159)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 456666666666667888889999999999 5666 331 1122234466788888887754
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.99 E-value=59 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.+.|.+.|++|+.++- -+ =-+--||.-|+.. .|.+++|.+.=.+|..
T Consensus 85 ~~~A~e~YrkAlsl~p-----~~---GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLAP-----NN---GDVLNNYGAFLCA-QGRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcCC-----Cc---cchhhhhhHHHHh-CCChHHHHHHHHHHHh
Confidence 5678999999986543 22 2244589999999 5799999887666654
No 59
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.03 E-value=1.7e+02 Score=26.06 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (216)
.....+.|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-.
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHH
Confidence 344566666666555432 333466889999999999999 799999999998776543
No 60
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=31.26 E-value=75 Score=15.71 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+..++.+..+.++|++++.++.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998886
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=30.91 E-value=2.4e+02 Score=23.15 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=7.7
Q ss_pred hCCHHHHHHHHHHHH
Q 027961 190 LNSSEKACTMAKQEK 204 (216)
Q Consensus 190 ~~~~~~A~~iAk~Af 204 (216)
.|+.++|+..-+++.
T Consensus 157 ~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 157 QADYAQAIELWQKVL 171 (198)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555544443
No 62
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=30.51 E-value=1.7e+02 Score=25.37 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
.+.|.-.|.++-.... .++|....+|+ +.+|+++-.+.--++.+.|+..-++|++-
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3457788888877665 78889999998 77899999998433999999999999886
No 63
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.33 E-value=1.5e+02 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 7 ~~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-+++..|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777778999999999988777764
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=30.01 E-value=1.8e+02 Score=23.72 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 157 YKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 157 Y~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
|++|...-++ .+.|.+|..-...++.+..++. .|++++|+...+++...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=29.78 E-value=1.7e+02 Score=25.58 Aligned_cols=15 Identities=7% Similarity=0.219 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHhh
Q 027961 20 ERYEEMVKFMDSLVT 34 (216)
Q Consensus 20 ery~Dm~~~mk~~~~ 34 (216)
++.+.++..+.+++.
T Consensus 40 ~~~e~~i~~~~~~l~ 54 (296)
T PRK11189 40 LQQEVILARLNQILA 54 (296)
T ss_pred hHHHHHHHHHHHHHc
Confidence 344455555555553
No 66
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.20 E-value=1.1e+02 Score=19.43 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 027961 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (216)
Q Consensus 10 i~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLls 51 (216)
+.+|+.+-..|.++.+-+.+.+++. .++++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 5689999999999999999999996 222344455555553
No 67
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.19 E-value=3.5e+02 Score=22.82 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=42.6
Q ss_pred hcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027961 130 KGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (216)
Q Consensus 130 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (216)
-+=.||.+-+ .+.-+.+..+|.+.|++|++.- ..|.+.--...+..=-+-.++. +|+.++|.+--...+
T Consensus 124 lAWlyR~~~~---~~~E~~fl~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 124 LAWLYRDLGD---EENEKRFLRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHhhccCC---HHHHHHHHHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 4556666654 3444568999999999999754 3443332333333333445554 799998887655444
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.94 E-value=1.3e+02 Score=31.38 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027961 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (216)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (216)
++|+.|+.+-.. ...|.||+-|...-|+=+| -+|.+.++.+|-.|+..+
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhh
Confidence 667777766654 6889999988888776333 589999999999998877
No 69
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=28.52 E-value=1.5e+02 Score=21.59 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH----HHHHHHHHHHHHhCCHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYYEILNSSEKAC 197 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~yEi~~~~~~A~ 197 (216)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+- +-.+.-+|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN-aQSn~iKa~ 68 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN-AQSNTVKVF 68 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 444455555665432 58999999998 5667877754 333444444
No 70
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.19 E-value=1.8e+02 Score=24.39 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=40.9
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHH
Q 027961 135 RYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHP---IRLGLALNFSVFYYEILNSSEKAC---TMAKQEKTLTR 208 (216)
Q Consensus 135 RYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgL~LN~SVF~yEi~~~~~~A~---~iAk~Afd~ai 208 (216)
-=++-+..+.+.++..+.|..-|++|+.+ .|..+ .-||.|+--=-|+ ..+..+|- +.|..-|+.|.
T Consensus 36 LELAqfk~g~es~~miedAisK~eeAL~I-----~P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 36 LELAQFKQGPESKKMIEDAISKFEEALKI-----NPNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHH
Confidence 33566777778888899999999999865 23332 4466665544443 34554554 45666677777
Q ss_pred hhcC
Q 027961 209 LVSP 212 (216)
Q Consensus 209 ~~~~ 212 (216)
.+=|
T Consensus 108 ~~~P 111 (186)
T PF06552_consen 108 DEDP 111 (186)
T ss_dssp HH-T
T ss_pred hcCC
Confidence 6543
No 71
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.01 E-value=3.4e+02 Score=22.24 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhh
Q 027961 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIG 59 (216)
Q Consensus 24 Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~ 59 (216)
..++..+++++ . ..+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~e-e--~eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIE-E--DEELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHH-H--hhcCCHHHHHHHHhhhHHHhh
Confidence 45677778887 2 379999999999999988774
No 72
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=26.22 E-value=1.2e+02 Score=21.96 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=28.6
Q ss_pred hhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHH
Q 027961 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFY 186 (216)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~pirLgL~LN~SVF~ 186 (216)
.+++.|=|+-+.++..= .++.|-.+|.+ .+++.||-|+.-++-+.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34455656666655221 15566667765 79999999999999887765
No 73
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.91 E-value=2.5e+02 Score=20.05 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhhh----hhhHHHHHHHhHhhhh
Q 027961 41 ELTVEERNLLSVAYKNVIG----SLRAAWRIISSIEQKE 75 (216)
Q Consensus 41 ~Ls~eERnLlsvayKn~i~----~~R~s~r~l~~~eqk~ 75 (216)
.-+.+-|.+.-.+..+++. ..|++|+++-++-...
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 3567888888888888887 6799999997766554
No 74
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=24.97 E-value=88 Score=24.59 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q 027961 149 AAENTMLSYKAAQDIALTDLAPTHPIRLG 177 (216)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~pirLg 177 (216)
....|..+|+.+-+++. .+|+.-||..|
T Consensus 21 a~~~s~~~~~~a~~~~~-~ip~GQPIlVG 48 (126)
T PF12083_consen 21 AAARSEAAYEAANRMAE-AIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCCCCeecc
Confidence 56678899999998886 89999999988
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=24.91 E-value=8.4e+02 Score=25.77 Aligned_cols=56 Identities=11% Similarity=-0.073 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHhH
Q 027961 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (216)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~ 71 (216)
.++.++-..|++++++..+++++. . .|. +..=...|..+|.. .+....+.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~-~P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--V-DNT-DSYAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--h-CCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345666778999999999999997 2 243 23333445555532 34455555555443
No 76
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=24.87 E-value=70 Score=31.94 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=24.7
Q ss_pred hHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 027961 124 VFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNF 182 (216)
Q Consensus 124 vfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~ 182 (216)
-|||+|+|.- -.|..||-.|+-.+..+..-+--+-||..||-
T Consensus 220 s~YWR~~G~~-----------------~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R 261 (886)
T KOG4507|consen 220 SFYWRIKGEP-----------------YQAVECAMRALHFSSRHNKDIALLSLATVLHR 261 (886)
T ss_pred HHHHHHcCCh-----------------hhhhHHHHHHhhhCCcccccchhhhHHHHHHH
Confidence 4777777763 34678888887766544433333344455554
No 77
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.86 E-value=1.4e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
.++.+|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677778889999998888777665
No 78
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.66 E-value=86 Score=19.25 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=25.5
Q ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027961 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (216)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 171 (216)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 445556676655443 3567888999999988777763
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.31 E-value=2.4e+02 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
.-|++|....+. ...|.||.+-...++.+..+++ +|++++|+.+-++...
T Consensus 194 g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 194 GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTAKAKAVYQQVIK 245 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 345555555443 3457899888888888887776 7999999998876554
No 80
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=23.56 E-value=2.4e+02 Score=19.95 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhHH----HHHHHHHHH
Q 027961 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFY 186 (216)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~ 186 (216)
..+..+-+..+.|++-. ..|.||-.|. ..-+||+|+
T Consensus 12 ~~~~~~~~~l~~a~~~l---~~~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 12 KPADDANQAVNDSLAAL---DLPNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred HHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566777777777533 6678998886 445677764
No 81
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.08 E-value=1.5e+02 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 7 ~~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
.+++..|--.+++|+|++++.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566667677889999999999988875
No 82
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.81 E-value=3.9e+02 Score=25.91 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH---HHHhhhhhhHHHHHHHhHhhhhhccCchhhHHHHHHHHHHHH
Q 027961 21 RYEEMVKFMDSLVTSSTPATELTVEERNLLSVA---YKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVE 95 (216)
Q Consensus 21 ry~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsva---yKn~i~~~R~s~r~l~~~eqk~~~~~~~~~~~~i~~yr~ki~ 95 (216)
..++.-++|+.... ..+.-.+|..+|-.| |..++..-+..+..|..--|+|....+.+..++++.||.++.
T Consensus 120 ~L~~v~~~~~~~~~----~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~ 193 (508)
T PF00901_consen 120 DLEKVYKFMKGQEK----VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKID 193 (508)
T ss_pred HHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35556666666553 245556677777655 556777778888888777788766666667788899988764
No 83
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=22.65 E-value=1.6e+02 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+++..|--.+++|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667788888888888877764
No 84
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.63 E-value=1.8e+02 Score=19.53 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 11 YLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
....=.=|.|+|+++.+++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444678999999999999985
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=22.52 E-value=4.3e+02 Score=21.50 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 027961 146 RKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRLV 210 (216)
Q Consensus 146 ~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ai~~ 210 (216)
...--+.|.++|..|.. |.|.||- ...|.++.+.- +|+++.|. ++|+.||..
T Consensus 81 ~~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~ 132 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRI 132 (157)
T ss_pred HHhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHH
Confidence 33446778899988874 5566663 25666666665 79888765 456655543
No 86
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.46 E-value=40 Score=33.89 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027961 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (216)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (216)
++|..||+.|+ +++|.|.+--| |.++-||| -|..+-||.--++|++
T Consensus 269 d~Avs~Y~rAl-----~lrpn~A~a~g---Nla~iYye-qG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 269 DRAVSCYLRAL-----NLRPNHAVAHG---NLACIYYE-QGLLDLAIDTYKRALE 314 (966)
T ss_pred hHHHHHHHHHH-----hcCCcchhhcc---ceEEEEec-cccHHHHHHHHHHHHh
No 87
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=22.07 E-value=97 Score=24.57 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC-------chHhHHhhhhcc
Q 027961 96 SELSDVCGSILKLLDSHLVPSATAG-------ESKVFYLKMKGD 132 (216)
Q Consensus 96 ~EL~~~c~eil~lid~~Lip~~~~~-------eskvfy~KmkgD 132 (216)
+=+.++|+||+.+|...+.-....+ -.|-||+|.-=+
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 4567899999999988874333222 246788876443
No 88
>PF12603 DUF3770: Protein of unknown function (DUF3770); InterPro: IPR022531 This family is found in viruses, and is approximately 250 amino acids in length. It is found N-terminal to PF04196 from PFAM in polyproteins.; GO: 0003968 RNA-directed RNA polymerase activity
Probab=22.04 E-value=3e+02 Score=24.22 Aligned_cols=95 Identities=27% Similarity=0.404 Sum_probs=52.2
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHh---------Hhhh
Q 027961 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS---------IEQK 74 (216)
Q Consensus 4 ~~r~~li~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~---------~eqk 74 (216)
.+-++|+|+=+||-+. +.+|-.+.-.+.. ...+|+..||.++++ |++.+--|..-.+ .++-
T Consensus 3 devnELvfRfRlA~~I--~ee~k~~~pel~~---~Deel~k~erei~~i-----vssIq~dw~~te~kFp~f~~emfe~F 72 (250)
T PF12603_consen 3 DEVNELVFRFRLARAI--MEEMKKYYPELSD---DDEELSKQEREILGI-----VSSIQMDWEVTESKFPPFKEEMFENF 72 (250)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHhcccccc---chHHHHHhHHHHHhh-----HhheecccccCcccCCccHHHHHHHH
Confidence 3568999999999876 3333222222222 124566666666654 5555555554321 1110
Q ss_pred hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 027961 75 EEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSA 117 (216)
Q Consensus 75 ~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eil~lid~~Lip~~ 117 (216)
-.. ..=.+|-.+|..+...-|.+- +++++.+...
T Consensus 73 ~~~-------~~D~dYls~iis~~~~~s~~~--l~~~~f~~~~ 106 (250)
T PF12603_consen 73 LQT-------SADEDYLSSIISECLKESQKD--LIKSHFLGKV 106 (250)
T ss_pred cCC-------CccHHHHHHHHHHHHHHHHHH--HHhccccccc
Confidence 000 111568888888888888875 4466665443
No 89
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=22.00 E-value=8.1e+02 Score=24.54 Aligned_cols=26 Identities=8% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 9 li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+..+|.++...+++++++..+++++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777888888888777775
No 90
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=5.1e+02 Score=24.13 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=49.8
Q ss_pred hcccchhhhhccc---chhH----HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027961 130 KGDYYRYLAEFKV---GDER----KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (216)
Q Consensus 130 kgDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~ 202 (216)
-++||-|+||-.. +.++ .+.-+.=.+-..++.+-|++++. -+-+| ...+|-+-||-.| ||++.|.+.-..
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlG-E~ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLG-ESEVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hHHHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3677888887432 1111 12222233445566777776655 33344 3457777777765 999999999999
Q ss_pred HHHHHHhh
Q 027961 203 EKTLTRLV 210 (216)
Q Consensus 203 Afd~ai~~ 210 (216)
+++++++-
T Consensus 130 t~~ktvs~ 137 (393)
T KOG0687|consen 130 TYEKTVSL 137 (393)
T ss_pred HHHHHhhc
Confidence 99999874
No 91
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.69 E-value=3e+02 Score=23.55 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCC-----CchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 027961 93 KVESELSDVCGSILKLLDSHLVPSATA-----GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (216)
Q Consensus 93 ki~~EL~~~c~eil~lid~~Lip~~~~-----~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (216)
...+.-...-++.+++....|-|...- -.-.|||+.+.|| ..++++-|.++|..|..-.
T Consensus 140 ~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 140 EAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhh
Confidence 344445555566778888876554321 1445888877666 3457778888888887644
No 92
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=21.46 E-value=2.8e+02 Score=18.91 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
+++..|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667888999999999888775
No 93
>PRK12370 invasion protein regulator; Provisional
Probab=20.88 E-value=2.5e+02 Score=26.93 Aligned_cols=15 Identities=7% Similarity=0.156 Sum_probs=7.5
Q ss_pred hCCHHHHHHHHHHHH
Q 027961 190 LNSSEKACTMAKQEK 204 (216)
Q Consensus 190 ~~~~~~A~~iAk~Af 204 (216)
.|+.++|+..++++.
T Consensus 419 ~g~~eeA~~~~~~~l 433 (553)
T PRK12370 419 HTGIDDAIRLGDELR 433 (553)
T ss_pred ccCHHHHHHHHHHHH
Confidence 455555555544443
No 94
>PHA02103 hypothetical protein
Probab=20.80 E-value=33 Score=26.48 Aligned_cols=14 Identities=50% Similarity=0.847 Sum_probs=11.1
Q ss_pred hcccchhhhhcccc
Q 027961 130 KGDYYRYLAEFKVG 143 (216)
Q Consensus 130 kgDyyRYlaE~~~~ 143 (216)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 56999999986555
No 95
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.77 E-value=2.1e+02 Score=19.20 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 8 ~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
.++..|--+++.|+|++++++=++.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467778888888999998888777664
No 96
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.71 E-value=3.4e+02 Score=25.98 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (216)
.+.|..+|++|++ +.|.|+--=..-.|.+..|- .+|+.++|+...++|++.
T Consensus 91 yeEAIa~f~rALe-----L~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 91 VKDALAQFETALE-----LNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh-----hCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4567888888875 45676522112255555544 489999999998888774
No 97
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.44 E-value=3.2e+02 Score=24.56 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=50.1
Q ss_pred HHHHhhhccCCCCCCCchHhHHhhhhcccchhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 027961 105 ILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSV 184 (216)
Q Consensus 105 il~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SV 184 (216)
++.-+..+|=-+..+.|. |=|-|-+|...-++ ..|..+|..|.. |.|-||-++|..- -+
T Consensus 141 l~a~Le~~L~~nP~d~eg----W~~Lg~~ym~~~~~----------~~A~~AY~~A~r-----L~g~n~~~~~g~a--ea 199 (287)
T COG4235 141 LIARLETHLQQNPGDAEG----WDLLGRAYMALGRA----------SDALLAYRNALR-----LAGDNPEILLGLA--EA 199 (287)
T ss_pred HHHHHHHHHHhCCCCchh----HHHHHHHHHHhcch----------hHHHHHHHHHHH-----hCCCCHHHHHHHH--HH
Confidence 444556666556667776 55678888777553 457999999985 6678887766432 34
Q ss_pred HHHHH-hCCHHHHHHHHHHHH
Q 027961 185 FYYEI-LNSSEKACTMAKQEK 204 (216)
Q Consensus 185 F~yEi-~~~~~~A~~iAk~Af 204 (216)
++|-- -.++.+|..+.++|.
T Consensus 200 L~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 200 LYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHhcCCcccHHHHHHHHHHH
Confidence 44432 225566666666664
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=20.21 E-value=9e+02 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 027961 6 REQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (216)
Q Consensus 6 r~~li~~Aklaeq~ery~Dm~~~mk~~~~ 34 (216)
-+-+.-+|.+..+.|||||.......+++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~ 114 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ 114 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 35567889999999999999999999997
No 99
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=2.2e+02 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHhC
Q 027961 150 AENTMLSYKAAQDIALTDLAPTHPIRL-GLALNFSVFYYEILN 191 (216)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yEi~~ 191 (216)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 456899999999999999999999777 458999999999543
Done!