Query 027962
Match_columns 216
No_of_seqs 104 out of 1131
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 4.4E-29 9.6E-34 192.9 13.9 194 8-216 102-348 (392)
2 KOG1230 Protein containing rep 100.0 2E-27 4.2E-32 193.0 14.0 190 10-214 97-341 (521)
3 PLN02193 nitrile-specifier pro 99.9 3.9E-26 8.4E-31 197.3 20.5 186 10-213 192-410 (470)
4 KOG0379 Kelch repeat-containin 99.9 1.5E-26 3.3E-31 199.8 17.5 161 12-214 89-250 (482)
5 PLN02153 epithiospecifier prot 99.9 8.5E-26 1.8E-30 188.1 20.3 189 10-213 49-284 (341)
6 PLN02193 nitrile-specifier pro 99.9 9.2E-24 2E-28 182.5 20.4 181 9-214 242-469 (470)
7 PHA03098 kelch-like protein; P 99.9 6.3E-24 1.4E-28 186.6 19.7 171 9-213 309-511 (534)
8 KOG0379 Kelch repeat-containin 99.9 4.4E-24 9.5E-29 184.5 17.7 149 10-191 138-287 (482)
9 KOG4441 Proteins containing BT 99.9 1.4E-23 3.1E-28 184.2 18.1 159 8-190 298-486 (571)
10 KOG4441 Proteins containing BT 99.9 1.2E-23 2.6E-28 184.7 16.0 158 8-189 346-532 (571)
11 PHA02713 hypothetical protein; 99.9 2.5E-23 5.4E-28 182.9 17.8 158 9-190 318-523 (557)
12 KOG4693 Uncharacterized conser 99.9 1E-23 2.2E-28 163.3 12.3 180 12-214 45-277 (392)
13 PHA02790 Kelch-like protein; P 99.9 7.4E-23 1.6E-27 177.3 19.0 165 9-213 285-470 (480)
14 PLN02153 epithiospecifier prot 99.9 2E-22 4.2E-27 167.9 18.5 166 9-214 157-340 (341)
15 PHA02713 hypothetical protein; 99.9 1.9E-22 4.2E-27 177.3 18.7 156 10-189 271-473 (557)
16 TIGR03548 mutarot_permut cycli 99.9 3.4E-21 7.5E-26 159.3 17.9 140 10-189 38-181 (323)
17 TIGR03548 mutarot_permut cycli 99.9 4.2E-21 9.1E-26 158.8 18.2 142 8-189 85-233 (323)
18 KOG1230 Protein containing rep 99.9 6.8E-22 1.5E-26 160.9 12.8 148 32-214 60-216 (521)
19 TIGR03547 muta_rot_YjhT mutatr 99.9 8.7E-21 1.9E-25 158.3 17.5 173 9-212 83-345 (346)
20 TIGR03547 muta_rot_YjhT mutatr 99.9 2.7E-20 6E-25 155.3 17.6 159 10-189 28-210 (346)
21 PRK14131 N-acetylneuraminic ac 99.9 2.7E-20 5.9E-25 157.0 16.6 174 9-213 104-368 (376)
22 PRK14131 N-acetylneuraminic ac 99.8 3.7E-19 8.1E-24 150.0 17.0 143 11-190 50-232 (376)
23 PHA03098 kelch-like protein; P 99.8 3E-19 6.5E-24 157.1 16.9 170 12-213 265-464 (534)
24 KOG4152 Host cell transcriptio 99.8 8.1E-20 1.8E-24 152.5 9.2 158 25-214 17-180 (830)
25 KOG4152 Host cell transcriptio 99.8 6.6E-19 1.4E-23 147.1 10.9 172 9-214 55-239 (830)
26 PHA02790 Kelch-like protein; P 99.7 1.2E-15 2.6E-20 132.5 13.7 102 10-141 330-431 (480)
27 COG3055 Uncharacterized protei 99.5 1.1E-13 2.4E-18 111.7 9.4 173 1-193 51-242 (381)
28 PF13964 Kelch_6: Kelch motif 99.3 3.4E-12 7.3E-17 76.3 6.4 50 38-98 1-50 (50)
29 KOG2437 Muskelin [Signal trans 99.3 7E-12 1.5E-16 105.2 7.9 157 24-213 238-412 (723)
30 PF13418 Kelch_4: Galactose ox 99.2 1.8E-11 3.8E-16 72.8 4.6 44 38-83 1-44 (49)
31 KOG2437 Muskelin [Signal trans 99.2 5E-12 1.1E-16 106.1 2.5 152 10-189 287-457 (723)
32 COG3055 Uncharacterized protei 99.2 3.1E-10 6.7E-15 92.0 12.2 162 10-194 112-364 (381)
33 PF13415 Kelch_3: Galactose ox 99.2 9.1E-11 2E-15 69.7 6.5 46 50-105 2-48 (49)
34 PLN02772 guanylate kinase 99.1 6.9E-10 1.5E-14 92.6 10.4 88 94-213 21-108 (398)
35 PF01344 Kelch_1: Kelch motif; 99.1 1.9E-10 4.1E-15 67.7 4.3 43 38-83 1-43 (47)
36 PF13964 Kelch_6: Kelch motif 99.1 6E-10 1.3E-14 66.4 6.1 50 97-168 1-50 (50)
37 PLN02772 guanylate kinase 99.0 3.1E-09 6.6E-14 88.8 11.6 90 34-134 20-109 (398)
38 PF13415 Kelch_3: Galactose ox 99.0 6.7E-10 1.4E-14 66.0 5.5 47 108-175 1-48 (49)
39 PF07646 Kelch_2: Kelch motif; 99.0 1E-09 2.2E-14 65.2 6.1 43 38-83 1-45 (49)
40 PF13854 Kelch_5: Kelch motif 99.0 1.8E-09 4E-14 61.8 5.6 40 35-75 1-41 (42)
41 PF03089 RAG2: Recombination a 99.0 1.6E-08 3.4E-13 79.8 12.4 118 52-190 41-175 (337)
42 PF13418 Kelch_4: Galactose ox 98.9 6.8E-10 1.5E-14 65.9 3.1 46 97-160 1-46 (49)
43 PF07646 Kelch_2: Kelch motif; 98.9 4.5E-09 9.7E-14 62.3 5.5 46 97-161 1-48 (49)
44 PF13854 Kelch_5: Kelch motif 98.8 9.9E-09 2.1E-13 58.8 5.2 39 94-133 1-40 (42)
45 PF01344 Kelch_1: Kelch motif; 98.8 1.1E-08 2.5E-13 59.9 3.9 46 97-161 1-46 (47)
46 smart00612 Kelch Kelch domain. 98.6 1.3E-07 2.8E-12 55.0 5.2 44 51-105 1-44 (47)
47 PF03089 RAG2: Recombination a 98.5 1.1E-05 2.5E-10 64.0 14.1 115 10-133 54-190 (337)
48 smart00612 Kelch Kelch domain. 98.1 3.8E-06 8.3E-11 48.7 3.9 45 110-176 1-45 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.0018 3.9E-08 51.3 9.7 89 13-118 48-138 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.0072 1.6E-07 47.9 12.7 104 10-133 90-197 (243)
51 TIGR01640 F_box_assoc_1 F-box 96.2 0.38 8.3E-06 37.6 14.1 100 11-131 70-174 (230)
52 PF12768 Rax2: Cortical protei 95.8 0.57 1.2E-05 38.2 13.5 108 9-131 14-121 (281)
53 TIGR01640 F_box_assoc_1 F-box 93.2 3.2 7E-05 32.3 16.0 109 11-135 14-128 (230)
54 PF12768 Rax2: Cortical protei 92.3 2.5 5.5E-05 34.4 10.4 92 64-188 14-110 (281)
55 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.3 27 0.00059 31.2 12.9 74 43-135 64-140 (527)
56 PF08268 FBA_3: F-box associat 84.9 11 0.00024 26.5 9.2 68 10-84 19-88 (129)
57 PF15525 DUF4652: Domain of un 82.3 15 0.00033 28.0 8.2 68 10-83 87-155 (200)
58 PF08268 FBA_3: F-box associat 81.4 16 0.00035 25.7 11.4 75 46-131 3-77 (129)
59 PF07893 DUF1668: Protein of u 80.4 33 0.00072 28.7 12.2 129 12-161 87-240 (342)
60 PRK11138 outer membrane biogen 75.8 48 0.001 28.1 13.5 32 44-83 65-96 (394)
61 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.0 66 0.0014 28.8 14.1 106 11-135 79-191 (527)
62 PF13360 PQQ_2: PQQ-like domai 72.9 40 0.00087 25.8 14.0 101 11-135 86-193 (238)
63 KOG2055 WD40 repeat protein [G 69.4 66 0.0014 28.1 9.6 95 10-133 279-374 (514)
64 PF07893 DUF1668: Protein of u 68.8 69 0.0015 26.9 12.9 52 49-118 76-127 (342)
65 TIGR03074 PQQ_membr_DH membran 62.9 1.4E+02 0.003 28.2 14.2 71 4-83 144-221 (764)
66 cd00216 PQQ_DH Dehydrogenases 60.5 1.2E+02 0.0026 26.7 10.8 69 11-83 120-192 (488)
67 PF13360 PQQ_2: PQQ-like domai 60.0 75 0.0016 24.2 15.9 96 10-135 45-142 (238)
68 PRK11138 outer membrane biogen 55.1 1.3E+02 0.0028 25.5 13.2 96 11-135 79-180 (394)
69 PF13540 RCC1_2: Regulator of 54.7 22 0.00047 18.1 2.8 18 40-57 8-25 (30)
70 PF12217 End_beta_propel: Cata 53.3 1.2E+02 0.0027 24.6 13.8 121 44-189 196-334 (367)
71 KOG1645 RING-finger-containing 42.8 1.4E+02 0.0029 25.9 7.0 53 10-75 215-267 (463)
72 KOG2055 WD40 repeat protein [G 39.8 2.7E+02 0.0058 24.6 9.6 56 49-118 268-324 (514)
73 COG4257 Vgb Streptogramin lyas 39.6 1.3E+02 0.0028 24.8 6.2 58 11-83 254-312 (353)
74 TIGR03300 assembly_YfgL outer 38.5 2.3E+02 0.0051 23.6 12.9 90 11-135 251-340 (377)
75 PRK11028 6-phosphogluconolacto 37.7 2.2E+02 0.0049 23.1 13.5 60 11-83 12-73 (330)
76 PF13088 BNR_2: BNR repeat-lik 34.4 2.3E+02 0.005 22.3 9.4 81 25-116 145-226 (275)
77 PF08450 SGL: SMP-30/Gluconola 32.8 2.3E+02 0.0051 21.9 11.8 99 11-133 22-123 (246)
78 cd00216 PQQ_DH Dehydrogenases 31.7 3.6E+02 0.0078 23.7 15.2 108 11-135 71-185 (488)
79 PF13088 BNR_2: BNR repeat-lik 31.5 83 0.0018 24.9 4.2 56 25-83 194-249 (275)
80 TIGR02658 TTQ_MADH_Hv methylam 30.3 3.4E+02 0.0074 23.0 10.6 72 50-135 13-87 (352)
81 PF15525 DUF4652: Domain of un 29.0 2.7E+02 0.0059 21.4 6.7 18 116-133 79-96 (200)
82 PRK00178 tolB translocation pr 27.5 3.9E+02 0.0084 22.8 16.3 16 66-83 267-282 (430)
83 COG1520 FOG: WD40-like repeat 27.0 3.7E+02 0.0081 22.4 11.8 94 12-135 79-173 (370)
84 PRK04792 tolB translocation pr 26.7 4.3E+02 0.0093 23.0 15.9 60 11-84 242-302 (448)
85 PF08950 DUF1861: Protein of u 26.3 2E+02 0.0044 23.6 5.3 58 49-117 36-95 (298)
86 KOG4649 PQQ (pyrrolo-quinoline 25.3 3.8E+02 0.0083 22.0 9.3 70 42-135 14-83 (354)
87 KOG2321 WD40 repeat protein [G 22.9 6E+02 0.013 23.3 9.7 65 35-118 130-196 (703)
88 TIGR03300 assembly_YfgL outer 20.9 4.9E+02 0.011 21.6 14.7 63 11-83 155-217 (377)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=192.90 Aligned_cols=194 Identities=24% Similarity=0.337 Sum_probs=161.7
Q ss_pred cccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCC-CceeCcEEEEecCCCCccEEEecc
Q 027962 8 LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-YEVLNDVWFLDVYEGFFKWVQIPY 85 (216)
Q Consensus 8 ~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~W~~~~~ 85 (216)
..+|-+++||++++ +|.++. .+-.|.+|.+|++|++ ++.+|||||+.+. .++.++++.+|+.| .+|+.+.
T Consensus 102 gaCN~Ly~fDp~t~----~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~- 173 (392)
T KOG4693|consen 102 GACNLLYEFDPETN----VWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMH- 173 (392)
T ss_pred cccceeeeeccccc----cccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccc--eeeeehh-
Confidence 45789999999998 999988 7889999999999999 4799999999543 46788999999999 9999997
Q ss_pred CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--------CCCCCceEEEecCCCCcccccc----c----------
Q 027962 86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDFWVLDTKAIPFTSVQQ----S---------- 143 (216)
Q Consensus 86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~---------- 143 (216)
+.+++|.-|..|++.+ .++.+|||||+... ..+++.+..+|+.+..|...++ +
T Consensus 174 ----Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv 248 (392)
T KOG4693|consen 174 ----TKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV 248 (392)
T ss_pred ----ccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE
Confidence 7788999999999999 88999999998643 3467788899999999974332 1
Q ss_pred --------------------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCC------CCC-C-
Q 027962 144 --------------------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG------LVQ-P- 195 (216)
Q Consensus 144 --------------------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~------~~~-~- 195 (216)
++.++||++..|..+...|..|.+|..|.+++ .++++|+|||...- ..+ .
T Consensus 249 Yng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v--~g~kv~LFGGTsP~~~~~~Spt~~~G 326 (392)
T KOG4693|consen 249 YNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV--SGGKVYLFGGTSPLPCHPLSPTNYNG 326 (392)
T ss_pred EcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEE--ECCEEEEecCCCCCCCCCCCccccCC
Confidence 19999999999999999999999998887777 69999999999651 111 1
Q ss_pred -CCCcccccccceeEeeccccC
Q 027962 196 -ADTSGLRFDGRLLLVELVPLL 216 (216)
Q Consensus 196 -~~~~~~~~~~d~~~~~~~~~~ 216 (216)
.+..++....|++.+|++|.|
T Consensus 327 ~~~~~~LiD~SDLHvLDF~PsL 348 (392)
T KOG4693|consen 327 MISPSGLIDLSDLHVLDFAPSL 348 (392)
T ss_pred CCCcccccccccceeeecChhH
Confidence 134455577899999999865
No 2
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=2e-27 Score=192.97 Aligned_cols=190 Identities=24% Similarity=0.408 Sum_probs=156.6
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCC--CCC---ceeCcEEEEecCCCCccEEEec
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG--VGY---EVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~--~~~---~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
.||+|.|+++++ .|+++.....|+||++|.++++..|.+++|||-- .++ --+.|+|+||+.+ ++|+++
T Consensus 97 YndLy~Yn~k~~----eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t--rkweql- 169 (521)
T KOG1230|consen 97 YNDLYSYNTKKN----EWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKT--RKWEQL- 169 (521)
T ss_pred eeeeeEEecccc----ceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeecc--chheee-
Confidence 699999999998 9999998889999999999999768999999962 111 1378999999999 999999
Q ss_pred cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC---CCCCCceEEEecCCCCccccccc------------------
Q 027962 85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA---RRRKDDFWVLDTKAIPFTSVQQS------------------ 143 (216)
Q Consensus 85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------ 143 (216)
..+..|.+|.+|-+++ ...+|++|||+.+. -.++||||+||+++.+|+..-++
T Consensus 170 -----~~~g~PS~RSGHRMva-wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 170 -----EFGGGPSPRSGHRMVA-WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG 243 (521)
T ss_pred -----ccCCCCCCCccceeEE-eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence 4455899999999999 99999999998543 24789999999999999833211
Q ss_pred ------------------------cccccCccc-----CCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCC
Q 027962 144 ------------------------MLDSRGLLL-----NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQ 194 (216)
Q Consensus 144 ------------------------~~~~~~~~~-----~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~ 194 (216)
+|+..++.. ..|+++...|..|.||++.+.++. .+++-+.|||..+-...
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGVCDLEEE 322 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEecceeccccc
Confidence 067777777 999999999999999999888886 56689999999764433
Q ss_pred CCCCcccccccceeEeeccc
Q 027962 195 PADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 195 ~~~~~~~~~~~d~~~~~~~~ 214 (216)
..+..+. |.||||.||+..
T Consensus 323 eEsl~g~-F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 323 EESLSGE-FFNDLYFFDLTR 341 (521)
T ss_pred chhhhhh-hhhhhhheeccc
Confidence 4444444 999999999873
No 3
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=3.9e-26 Score=197.31 Aligned_cols=186 Identities=18% Similarity=0.290 Sum_probs=146.1
Q ss_pred cccEEEEeccCCccccceEEcc-cCCCCC-CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 10 LGDTWVLELSENFCFGSWQQLV-THPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~-~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
.+++|+||++++ +|+.++ .+++|. +|.+|+++.+ +++||||||.. ....++++|+||+.+ ++|+++.
T Consensus 192 ~~~v~~yD~~~~----~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~-~~~~~ndv~~yD~~t--~~W~~l~--- 260 (470)
T PLN02193 192 DKHLYVFDLETR----TWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRD-ASRQYNGFYSFDTTT--NEWKLLT--- 260 (470)
T ss_pred eCcEEEEECCCC----EEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCC-CCCCCccEEEEECCC--CEEEEcC---
Confidence 578999999997 999876 334444 4678999999 58999999985 345689999999999 9999984
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-------------------------
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ------------------------- 142 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 142 (216)
..+..|.+|++|++++ .+++||+|||++. ...++++++||+.+.+|...+.
T Consensus 261 --~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 261 --PVEEGPTPRSFHSMAA-DEENVYVFGGVSA-TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred --cCCCCCCCccceEEEE-ECCEEEEECCCCC-CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 2223488999999988 8999999999975 3467899999999999974321
Q ss_pred ------ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 143 ------SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 143 ------~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
..+.+||+.+++|+++...+..|.+|..|++++ .+++||||||............+ .+.+|+|.||+.
T Consensus 337 ~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~-~~~ndv~~~D~~ 410 (470)
T PLN02193 337 FNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPG-QLTDGTFALDTE 410 (470)
T ss_pred CCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCcc-ceeccEEEEEcC
Confidence 126789999999999988777789999998887 58899999998543211111111 256799999986
No 4
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=199.83 Aligned_cols=161 Identities=31% Similarity=0.573 Sum_probs=143.2
Q ss_pred cEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCC
Q 027962 12 DTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 90 (216)
Q Consensus 12 ~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 90 (216)
|+|.+|..+. .|.+.. ++..|.+|++|+++++ +++||+|||........++++.||+.| ++|+.+. .
T Consensus 89 dl~~~d~~~~----~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t--~~W~~l~-----~ 156 (482)
T KOG0379|consen 89 DLYVLDLESQ----LWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNLNELHSLDLST--RTWSLLS-----P 156 (482)
T ss_pred eeEEeecCCc----ccccccccCCCCCcccceeEEEE-CCeEEEEccccCCCCChhheEeccCCC--CcEEEec-----C
Confidence 5999999996 998887 7888999999999999 589999999965566689999999999 9999986 6
Q ss_pred CCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcc
Q 027962 91 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF 170 (216)
Q Consensus 91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~ 170 (216)
.+++|.+|.+|++++ .+.+||||||.+......+++|+||++ +.+|.++...|..|.||.+
T Consensus 157 ~~~~P~~r~~Hs~~~-~g~~l~vfGG~~~~~~~~ndl~i~d~~------------------~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 157 TGDPPPPRAGHSATV-VGTKLVVFGGIGGTGDSLNDLHIYDLE------------------TSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred cCCCCCCcccceEEE-ECCEEEEECCccCcccceeeeeeeccc------------------cccceecccCCCCCCCCCC
Confidence 677899999999999 889999999998776689999999999 7789999999999999999
Q ss_pred eeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962 171 HRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 171 h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 214 (216)
|++++ .+++++||||..... .+.+|+|.||++.
T Consensus 218 H~~~~--~~~~~~v~gG~~~~~---------~~l~D~~~ldl~~ 250 (482)
T KOG0379|consen 218 HAMVV--VGNKLLVFGGGDDGD---------VYLNDVHILDLST 250 (482)
T ss_pred ceEEE--ECCeEEEEeccccCC---------ceecceEeeeccc
Confidence 99999 588899998886332 2789999999874
No 5
>PLN02153 epithiospecifier protein
Probab=99.95 E-value=8.5e-26 Score=188.12 Aligned_cols=189 Identities=17% Similarity=0.286 Sum_probs=140.9
Q ss_pred cccEEEEeccCCccccceEEccc-CCCCC-CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 10 LGDTWVLELSENFCFGSWQQLVT-HPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~-~~~p~-~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
.+++|+||+.++ +|++++. +..|. .+.+|+++++ +++||+|||.. ....++++++||+.+ ++|+.+. .
T Consensus 49 ~~~~~~yd~~~~----~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~t--~~W~~~~--~ 118 (341)
T PLN02153 49 DKDLYVFDFNTH----TWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRD-EKREFSDFYSYDTVK--NEWTFLT--K 118 (341)
T ss_pred eCcEEEEECCCC----EEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCC-CCCccCcEEEEECCC--CEEEEec--c
Confidence 689999999997 9998762 22222 2457899999 58999999985 344578999999999 9999883 0
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC-----CCCCceEEEecCCCCcccccc--------------------
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-----RRKDDFWVLDTKAIPFTSVQQ-------------------- 142 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------------- 142 (216)
+ .....|.+|.+|++++ .+++||||||++... ..++++++||+++++|...+.
T Consensus 119 ~-~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 119 L-DEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred C-CCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 0 0112388999999988 999999999986432 235789999999999974321
Q ss_pred --------------------ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccc
Q 027962 143 --------------------SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLR 202 (216)
Q Consensus 143 --------------------~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~ 202 (216)
..+.+||+.+++|+++...+..|.+|..|++++ .+++||||||............ ..
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~-~~ 273 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGP-GT 273 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCcccccccc-cc
Confidence 015669999999999988777789999999888 5899999999843221111111 22
Q ss_pred cccceeEeecc
Q 027962 203 FDGRLLLVELV 213 (216)
Q Consensus 203 ~~~d~~~~~~~ 213 (216)
+.+|+|+||+.
T Consensus 274 ~~n~v~~~d~~ 284 (341)
T PLN02153 274 LSNEGYALDTE 284 (341)
T ss_pred ccccEEEEEcC
Confidence 56799999975
No 6
>PLN02193 nitrile-specifier protein
Probab=99.92 E-value=9.2e-24 Score=182.55 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=142.4
Q ss_pred ccccEEEEeccCCccccceEEccc-CCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVT-HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~-~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
.++++|+||++++ +|+++.. +..|.||+.|+++.+ +++||||||.+ ....+++++.||+.+ ++|+++.
T Consensus 242 ~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~-~~~~~~~~~~yd~~t--~~W~~~~--- 310 (470)
T PLN02193 242 QYNGFYSFDTTTN----EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVS-ATARLKTLDSYNIVD--KKWFHCS--- 310 (470)
T ss_pred CCccEEEEECCCC----EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCC-CCCCcceEEEEECCC--CEEEeCC---
Confidence 4799999999997 9999862 334889999999999 58999999995 345578999999999 9999985
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc------c------------------
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ------S------------------ 143 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------ 143 (216)
....+|.+|.+|++++ .+++||++||.+. ...+++++||+.+++|+.... +
T Consensus 311 --~~~~~~~~R~~~~~~~-~~gkiyviGG~~g--~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 311 --TPGDSFSIRGGAGLEV-VQGKVWVVYGFNG--CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred --CCCCCCCCCCCcEEEE-ECCcEEEEECCCC--CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 3345788999999988 8899999999863 347999999999999974321 0
Q ss_pred -----------------cccccCcccCCceEeecCC---CCCCCCcceeEE--EecCCCEEEEEccccCCCCCCCCCccc
Q 027962 144 -----------------MLDSRGLLLNMWKRLRAEG---YKPNCRSFHRAC--PDYSGRYLYVFGGMVDGLVQPADTSGL 201 (216)
Q Consensus 144 -----------------~~~~~~~~~~~W~~~~~~~---~~~~~r~~h~~~--~~~~~~~l~i~GG~~~~~~~~~~~~~~ 201 (216)
.+.+||+.+++|+++...+ ..|.+|..|+++ ....++.|+||||..+...
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~-------- 457 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND-------- 457 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc--------
Confidence 1678999999999998654 357788767543 2223456999999964421
Q ss_pred ccccceeEeeccc
Q 027962 202 RFDGRLLLVELVP 214 (216)
Q Consensus 202 ~~~~d~~~~~~~~ 214 (216)
..+|+|+|+++.
T Consensus 458 -~~~D~~~~~~~~ 469 (470)
T PLN02193 458 -RFDDLFFYGIDS 469 (470)
T ss_pred -cccceEEEecCC
Confidence 568999999875
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=6.3e-24 Score=186.61 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=142.3
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
..+++++||+.++ +|.++ .++|.+|.+|+++.+ +++||++||.. .....+++++||+.+ ++|+.+
T Consensus 309 ~~~~v~~yd~~~~----~W~~~--~~~~~~R~~~~~~~~-~~~lyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~----- 373 (534)
T PHA03098 309 SVNSVVSYDTKTK----SWNKV--PELIYPRKNPGVTVF-NNRIYVIGGIY-NSISLNTVESWKPGE--SKWREE----- 373 (534)
T ss_pred eeccEEEEeCCCC----eeeEC--CCCCcccccceEEEE-CCEEEEEeCCC-CCEecceEEEEcCCC--CceeeC-----
Confidence 4679999999997 99987 467889999999999 58999999995 456688999999999 999998
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c------------------------
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S------------------------ 143 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------ 143 (216)
.++|.+|.+|+++. .+++||++||........+++++||+.+++|...++ +
T Consensus 374 ---~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 ---PPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred ---CCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 78999999999988 899999999986555567899999999999974331 1
Q ss_pred -------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 144 -------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 144 -------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
.+.+||+.+++|+.+... +.+|.+|++++ .+++|||+||..... +.++++.||..
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~v~~yd~~ 511 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI--FNNKIYVVGGDKYEY----------YINEIEVYDDK 511 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCC---CcccccceEEE--ECCEEEEEcCCcCCc----------ccceeEEEeCC
Confidence 067899999999998754 67888888877 488999999985432 34677778765
No 8
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=4.4e-24 Score=184.53 Aligned_cols=149 Identities=35% Similarity=0.598 Sum_probs=135.2
Q ss_pred cccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 10 LGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
+++++.||+.++ +|+.+. .+.+|++|++|++++++ +++|||||.+......|++|.||+.+ .+|.++.
T Consensus 138 ~~~l~~~d~~t~----~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~--~~W~~~~---- 206 (482)
T KOG0379|consen 138 LNELHSLDLSTR----TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLET--STWSELD---- 206 (482)
T ss_pred hhheEeccCCCC----cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeecccc--ccceecc----
Confidence 789999999997 999988 66789999999999995 89999999976666899999999999 9999996
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCC
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR 168 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r 168 (216)
..+..|.||++|++++ .++++++|||.+..+.+++|++++|+. +.+|.++...+..|.+|
T Consensus 207 -~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~------------------~~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 207 -TQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGDVYLNDVHILDLS------------------TWEWKLLPTGGDLPSPR 266 (482)
T ss_pred -cCCCCCCCCCCceEEE-ECCeEEEEeccccCCceecceEeeecc------------------cceeeeccccCCCCCCc
Confidence 6788999999999999 999999999987667889999999999 77999999999999999
Q ss_pred cceeEEEecCCCEEEEEccccCC
Q 027962 169 SFHRACPDYSGRYLYVFGGMVDG 191 (216)
Q Consensus 169 ~~h~~~~~~~~~~l~i~GG~~~~ 191 (216)
+.|..++ .+.+++|+||....
T Consensus 267 ~~h~~~~--~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 267 SGHSLTV--SGDHLLLFGGGTDP 287 (482)
T ss_pred ceeeeEE--ECCEEEEEcCCccc
Confidence 9999996 78999999998654
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=184.19 Aligned_cols=159 Identities=20% Similarity=0.310 Sum_probs=141.4
Q ss_pred cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
..++.+.+||++++ +|..+ .++|.+|.+++++++ +++||++||++.....++++|+||+.+ ++|+.+
T Consensus 298 ~~~~~ve~yd~~~~----~w~~~--a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~---- 364 (571)
T KOG4441|consen 298 QSLRSVECYDPKTN----EWSSL--APMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPV---- 364 (571)
T ss_pred cccceeEEecCCcC----cEeec--CCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC--Cceecc----
Confidence 44789999999997 99998 578999999999999 589999999964566789999999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc-cc-----------------------
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ-QS----------------------- 143 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------- 143 (216)
++|+.+|.+++.+. .++.||+.||++. ...++.+++||+.+++|..+. ++
T Consensus 365 ----a~M~~~R~~~~v~~-l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 ----APMNTKRSDFGVAV-LDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred ----CCccCccccceeEE-ECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 89999999999999 9999999999985 567899999999999998554 21
Q ss_pred ------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962 144 ------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 190 (216)
Q Consensus 144 ------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~ 190 (216)
.+.+|||.+++|+.++++ +.+|.+|++++ .+++||++||...
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~--~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV--LNGKIYVVGGFDG 486 (571)
T ss_pred CccccceEEEEcCCCCceeecCCc---ccccccceEEE--ECCEEEEECCccC
Confidence 189999999999999887 78999999888 6999999999965
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=184.67 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=139.8
Q ss_pred cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
..++++|+||++++ +|.++ .+++.+|.+++++++ ++.||++||++ ....++++++||+.+ ++|+.+
T Consensus 346 ~~l~~ve~YD~~~~----~W~~~--a~M~~~R~~~~v~~l-~g~iYavGG~d-g~~~l~svE~YDp~~--~~W~~v---- 411 (571)
T KOG4441|consen 346 DRLSSVERYDPRTN----QWTPV--APMNTKRSDFGVAVL-DGKLYAVGGFD-GEKSLNSVECYDPVT--NKWTPV---- 411 (571)
T ss_pred cccceEEEecCCCC----ceecc--CCccCccccceeEEE-CCEEEEEeccc-cccccccEEEecCCC--Cccccc----
Confidence 45899999999998 99997 579999999999999 68999999996 677899999999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-----------------------
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S----------------------- 143 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------- 143 (216)
++|+.+|.+|++++ .+++||++||.+.....++.+++||+.+++|...++ +
T Consensus 412 ----a~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 412 ----APMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred ----CCCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 88999999999999 999999999998765589999999999999985442 1
Q ss_pred -----cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEcccc
Q 027962 144 -----MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 144 -----~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
.+-+|||.+++|..+..+ ..+|..+++++ .++++|++||..
T Consensus 487 ~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~--~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVV--LGGKLYAVGGFD 532 (571)
T ss_pred CCccceEEEEcCCCCceeEcccC---ccccccccEEE--ECCEEEEEeccc
Confidence 077899999999999765 67888787877 599999999974
No 11
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=2.5e-23 Score=182.93 Aligned_cols=158 Identities=14% Similarity=0.183 Sum_probs=133.9
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
.++++++||++++ .|..+ .++|.+|.+|+++++ +++||++||.. .....+++++||+.+ ++|+.+
T Consensus 318 ~~~~v~~Yd~~~n----~W~~~--~~m~~~R~~~~~~~~-~g~IYviGG~~-~~~~~~sve~Ydp~~--~~W~~~----- 382 (557)
T PHA02713 318 SLNKVYKINIENK----IHVEL--PPMIKNRCRFSLAVI-DDTIYAIGGQN-GTNVERTIECYTMGD--DKWKML----- 382 (557)
T ss_pred ccceEEEEECCCC----eEeeC--CCCcchhhceeEEEE-CCEEEEECCcC-CCCCCceEEEEECCC--CeEEEC-----
Confidence 4789999999998 99987 578999999999999 58999999985 344578899999999 999999
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC-----------------CCCCceEEEecCCCCccccccc--------
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-----------------RRKDDFWVLDTKAIPFTSVQQS-------- 143 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-------- 143 (216)
.++|.+|.++++++ .+++||++||.+... ...+.+++||+.+++|+..++.
T Consensus 383 ---~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 383 ---PDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ---CCCCcccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 78999999999888 899999999986421 1257899999999999844421
Q ss_pred ----------------------cccccCccc-CCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962 144 ----------------------MLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 190 (216)
Q Consensus 144 ----------------------~~~~~~~~~-~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~ 190 (216)
.+.+|||.+ ++|+.+.++ |.+|..+++++ .+++||++||+..
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc---CcccccceeEE--ECCEEEEEeeecc
Confidence 056899999 899999765 78999888888 5999999999853
No 12
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.91 E-value=1e-23 Score=163.29 Aligned_cols=180 Identities=23% Similarity=0.368 Sum_probs=148.2
Q ss_pred cEEEEeccCCccccceEEccc-----------CCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccE
Q 027962 12 DTWVLELSENFCFGSWQQLVT-----------HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW 80 (216)
Q Consensus 12 ~~~~~d~~~~~~~~~W~~~~~-----------~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W 80 (216)
|+.+|+..+ .+|.+++. .-.|.-|++|+++.+ ++++|++||++.....-|-++.||+++ ++|
T Consensus 45 DVH~lNa~~----~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W 117 (392)
T KOG4693|consen 45 DVHVLNAEN----YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPET--NVW 117 (392)
T ss_pred eeEEeeccc----eeEEecCcccccccccCCCCccchhhcCceEEEE-cceEEEEcCccCcccccceeeeecccc--ccc
Confidence 778888888 49998863 124667999999999 689999999976677789999999999 999
Q ss_pred EEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC-CCCCCceEEEecCCCCcccccc----c------------
Q 027962 81 VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-RRRKDDFWVLDTKAIPFTSVQQ----S------------ 143 (216)
Q Consensus 81 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~~~~~~~~~----~------------ 143 (216)
.... ..+..|.+|.+|++++ .+..+|||||+.+. ..+.+|+..+|+.+.+|.-... +
T Consensus 118 ~~p~-----v~G~vPgaRDGHsAcV-~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~ 191 (392)
T KOG4693|consen 118 KKPE-----VEGFVPGARDGHSACV-WGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID 191 (392)
T ss_pred cccc-----eeeecCCccCCceeeE-ECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence 8765 4588999999999999 99999999999543 4467899999999999974331 1
Q ss_pred -------------------------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCC
Q 027962 144 -------------------------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADT 198 (216)
Q Consensus 144 -------------------------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~ 198 (216)
.+.+.|.++..|......+..|..|..|++.+ ++++||+|||+.....
T Consensus 192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv--Yng~~Y~FGGYng~ln----- 264 (392)
T KOG4693|consen 192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV--YNGKMYMFGGYNGTLN----- 264 (392)
T ss_pred ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE--EcceEEEecccchhhh-----
Confidence 08889999999999988788899999899988 7999999999953321
Q ss_pred cccccccceeEeeccc
Q 027962 199 SGLRFDGRLLLVELVP 214 (216)
Q Consensus 199 ~~~~~~~d~~~~~~~~ 214 (216)
...+|+|.||...
T Consensus 265 ---~HfndLy~FdP~t 277 (392)
T KOG4693|consen 265 ---VHFNDLYCFDPKT 277 (392)
T ss_pred ---hhhcceeeccccc
Confidence 1567999998753
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=7.4e-23 Score=177.34 Aligned_cols=165 Identities=14% Similarity=0.136 Sum_probs=135.6
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
.++++++||++++ +|..+ .++|.+|..++++.+ +++||++||... .+++++||+.+ ++|+.+
T Consensus 285 ~~~~v~~Ydp~~~----~W~~~--~~m~~~r~~~~~v~~-~~~iYviGG~~~----~~sve~ydp~~--n~W~~~----- 346 (480)
T PHA02790 285 IHNNAIAVNYISN----NWIPI--PPMNSPRLYASGVPA-NNKLYVVGGLPN----PTSVERWFHGD--AAWVNM----- 346 (480)
T ss_pred cCCeEEEEECCCC----EEEEC--CCCCchhhcceEEEE-CCEEEEECCcCC----CCceEEEECCC--CeEEEC-----
Confidence 4688999999997 99998 468899999999999 589999999842 25689999999 999999
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccc---------------------cccc
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQS---------------------MLDS 147 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 147 (216)
+++|.+|.+|++++ .+++||++||.+.. .+.+++||+.+++|...++. .+.+
T Consensus 347 ---~~l~~~r~~~~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~ 419 (480)
T PHA02790 347 ---PSLLKPRCNPAVAS-INNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEF 419 (480)
T ss_pred ---CCCCCCCcccEEEE-ECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEE
Confidence 78999999999888 99999999998532 36789999999999854321 1568
Q ss_pred cCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 148 RGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 148 ~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
|++.+++|+.++++ +.+|.++++++ .+++||++||..... ..+.+.+||..
T Consensus 420 ydp~~~~W~~~~~m---~~~r~~~~~~v--~~~~IYviGG~~~~~----------~~~~ve~Yd~~ 470 (480)
T PHA02790 420 YCESSNTWTLIDDP---IYPRDNPELII--VDNKLLLIGGFYRGS----------YIDTIEVYNNR 470 (480)
T ss_pred ecCCCCcEeEcCCC---CCCccccEEEE--ECCEEEEECCcCCCc----------ccceEEEEECC
Confidence 99999999998765 67899888888 589999999985321 22456677654
No 14
>PLN02153 epithiospecifier protein
Probab=99.90 E-value=2e-22 Score=167.94 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=126.3
Q ss_pred ccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCC-------CCceeCcEEEEecCCCCccE
Q 027962 9 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGV-------GYEVLNDVWFLDVYEGFFKW 80 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~-------~~~~~~~~~~~d~~~~~~~W 80 (216)
.++++++||++++ +|++++ .+.+|.+|.+|+++++ +++|||+||... .....+++++||+.+ ++|
T Consensus 157 ~~~~v~~yd~~~~----~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~--~~W 229 (341)
T PLN02153 157 RFRTIEAYNIADG----KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS--GKW 229 (341)
T ss_pred ccceEEEEECCCC----eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCC--CcE
Confidence 4679999999997 999987 3345689999999999 589999998631 122368899999999 999
Q ss_pred EEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCC--------CCCCCCceEEEecCCCCccccccccccccCccc
Q 027962 81 VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL 152 (216)
Q Consensus 81 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (216)
+++. ..+.+|.+|..|++++ .+++||||||... .....+++++||++ +
T Consensus 230 ~~~~-----~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~------------------~ 285 (341)
T PLN02153 230 TEVE-----TTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE------------------T 285 (341)
T ss_pred Eecc-----ccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcC------------------c
Confidence 9985 3356799999999988 8999999999742 12346799999999 7
Q ss_pred CCceEeecCCCCCCCC--cceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962 153 NMWKRLRAEGYKPNCR--SFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 153 ~~W~~~~~~~~~~~~r--~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 214 (216)
++|+++...+..+.|| ..++.+.+..+++|||+||..+.. ...+|+|+|++-+
T Consensus 286 ~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~---------~~~~~~~~~~~~~ 340 (341)
T PLN02153 286 LVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN---------ERTDDLYFYAVNS 340 (341)
T ss_pred cEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC---------ccccceEEEeccc
Confidence 7999887544434444 444555544566999999996542 1458999998754
No 15
>PHA02713 hypothetical protein; Provisional
Probab=99.90 E-value=1.9e-22 Score=177.34 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=131.9
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 89 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~ 89 (216)
...+++||+.++ +|..+ .++|.+|.+|+++++ +++||++||........+++++||+.+ ++|+++
T Consensus 271 ~~~v~~yd~~~~----~W~~l--~~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~------ 335 (557)
T PHA02713 271 NPCILVYNINTM----EYSVI--STIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVEL------ 335 (557)
T ss_pred CCCEEEEeCCCC----eEEEC--CCCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCC--CeEeeC------
Confidence 357899999997 99998 468889999999999 589999999853445678999999999 999999
Q ss_pred CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-------------------c-----
Q 027962 90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-------------------M----- 144 (216)
Q Consensus 90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~----- 144 (216)
+++|.+|.+++++. .+++||++||.+. ....+.+++||+.+++|...++ + +
T Consensus 336 --~~m~~~R~~~~~~~-~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~ 411 (557)
T PHA02713 336 --PPMIKNRCRFSLAV-IDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHI 411 (557)
T ss_pred --CCCcchhhceeEEE-ECCEEEEECCcCC-CCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccc
Confidence 78999999999888 9999999999864 3457889999999999984432 0 0
Q ss_pred ----------------------ccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEcccc
Q 027962 145 ----------------------LDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 145 ----------------------~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
+.+|||.+++|+.++++ +.+|..|++++ .+++|||+||..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~--~~~~IYv~GG~~ 473 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVS--HKDDIYVVCDIK 473 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEE--ECCEEEEEeCCC
Confidence 34699999999998765 67898888888 589999999985
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.88 E-value=3.4e-21 Score=159.33 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=111.6
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccE----EEecc
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW----VQIPY 85 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W----~~~~~ 85 (216)
.+++++|+...+ ..+|..+ .++|.+|.+|+++.+ +++||++||.. ....++++++||+.+ .+| +.+
T Consensus 38 ~~~v~~~~~~~~--~~~W~~~--~~lp~~r~~~~~~~~-~~~lyviGG~~-~~~~~~~v~~~d~~~--~~w~~~~~~~-- 107 (323)
T TIGR03548 38 YKGIYIAKDENS--NLKWVKD--GQLPYEAAYGASVSV-ENGIYYIGGSN-SSERFSSVYRITLDE--SKEELICETI-- 107 (323)
T ss_pred eeeeEEEecCCC--ceeEEEc--ccCCccccceEEEEE-CCEEEEEcCCC-CCCCceeEEEEEEcC--CceeeeeeEc--
Confidence 578998863221 1479887 578899999999999 58999999985 445678999999999 887 455
Q ss_pred CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCC
Q 027962 86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKP 165 (216)
Q Consensus 86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 165 (216)
+++|.+|..|++++ .+++||++||... ....+++++||+. +++|+++...+ .
T Consensus 108 ------~~lp~~~~~~~~~~-~~~~iYv~GG~~~-~~~~~~v~~yd~~------------------~~~W~~~~~~p--~ 159 (323)
T TIGR03548 108 ------GNLPFTFENGSACY-KDGTLYVGGGNRN-GKPSNKSYLFNLE------------------TQEWFELPDFP--G 159 (323)
T ss_pred ------CCCCcCccCceEEE-ECCEEEEEeCcCC-CccCceEEEEcCC------------------CCCeeECCCCC--C
Confidence 77899999999988 8999999999853 4457899999998 77999987542 2
Q ss_pred CCCcceeEEEecCCCEEEEEcccc
Q 027962 166 NCRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 166 ~~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
.+|..|++++ .+++|||+||..
T Consensus 160 ~~r~~~~~~~--~~~~iYv~GG~~ 181 (323)
T TIGR03548 160 EPRVQPVCVK--LQNELYVFGGGS 181 (323)
T ss_pred CCCCcceEEE--ECCEEEEEcCCC
Confidence 4688787766 588999999974
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.88 E-value=4.2e-21 Score=158.80 Aligned_cols=142 Identities=17% Similarity=0.263 Sum_probs=110.7
Q ss_pred cccccEEEEeccCCccccce----EEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 8 LRLGDTWVLELSENFCFGSW----QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 8 ~~~~~~~~~d~~~~~~~~~W----~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
..++++++||++++ +| +.+ +++|.+|.+|+++++ +++||++||.. .....+++++||+.+ ++|+++
T Consensus 85 ~~~~~v~~~d~~~~----~w~~~~~~~--~~lp~~~~~~~~~~~-~~~iYv~GG~~-~~~~~~~v~~yd~~~--~~W~~~ 154 (323)
T TIGR03548 85 ERFSSVYRITLDES----KEELICETI--GNLPFTFENGSACYK-DGTLYVGGGNR-NGKPSNKSYLFNLET--QEWFEL 154 (323)
T ss_pred CCceeEEEEEEcCC----ceeeeeeEc--CCCCcCccCceEEEE-CCEEEEEeCcC-CCccCceEEEEcCCC--CCeeEC
Confidence 34789999999986 77 444 578899999999999 58999999984 445579999999999 999999
Q ss_pred ccCcCCCCCCCC-CCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCC
Q 027962 84 PYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG 162 (216)
Q Consensus 84 ~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 162 (216)
.++| .+|..|+++. .+++||++||.+. ....++++||++ +++|+++..+.
T Consensus 155 --------~~~p~~~r~~~~~~~-~~~~iYv~GG~~~--~~~~~~~~yd~~------------------~~~W~~~~~~~ 205 (323)
T TIGR03548 155 --------PDFPGEPRVQPVCVK-LQNELYVFGGGSN--IAYTDGYKYSPK------------------KNQWQKVADPT 205 (323)
T ss_pred --------CCCCCCCCCcceEEE-ECCEEEEEcCCCC--ccccceEEEecC------------------CCeeEECCCCC
Confidence 5566 4788888877 8999999999863 234678899988 77999987653
Q ss_pred C--CCCCCcceeEEEecCCCEEEEEcccc
Q 027962 163 Y--KPNCRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 163 ~--~~~~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
. .|..+..++.+++ .+++|||+||..
T Consensus 206 ~~~~p~~~~~~~~~~~-~~~~iyv~GG~~ 233 (323)
T TIGR03548 206 TDSEPISLLGAASIKI-NESLLLCIGGFN 233 (323)
T ss_pred CCCCceeccceeEEEE-CCCEEEEECCcC
Confidence 2 2333444444443 578999999985
No 18
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.88 E-value=6.8e-22 Score=160.92 Aligned_cols=148 Identities=28% Similarity=0.496 Sum_probs=121.4
Q ss_pred cCCCCCCCcCceEEEEc-CCeEEEEccC---CCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEe
Q 027962 32 THPSPPARSGHSLTRIG-GNRTVLFGGR---GVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL 107 (216)
Q Consensus 32 ~~~~p~~r~~h~~~~~~-~~~iyv~GG~---~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~ 107 (216)
.-++|.||++.++++.. .+++++|||- +.....+|++|.|++++ ++|.++ ..++.|.+|..|.++++.
T Consensus 60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~--~eWkk~------~spn~P~pRsshq~va~~ 131 (521)
T KOG1230|consen 60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK--NEWKKV------VSPNAPPPRSSHQAVAVP 131 (521)
T ss_pred cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccc--cceeEe------ccCCCcCCCccceeEEec
Confidence 45788999999988863 3479999996 22345799999999999 999998 567789999999999978
Q ss_pred CCEEEEEeCcCCC-----CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEE
Q 027962 108 GGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYL 182 (216)
Q Consensus 108 ~~~l~v~GG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l 182 (216)
.+.+|||||.-.. .-.+.|+|.||+. +++|+++...| .|.+|++|-|++ ..++|
T Consensus 132 s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~------------------trkweql~~~g-~PS~RSGHRMva--wK~~l 190 (521)
T KOG1230|consen 132 SNILWLFGGEFASPNQEQFHHYKDLWLFDLK------------------TRKWEQLEFGG-GPSPRSGHRMVA--WKRQL 190 (521)
T ss_pred cCeEEEeccccCCcchhhhhhhhheeeeeec------------------cchheeeccCC-CCCCCccceeEE--eeeeE
Confidence 7899999996321 1235799999999 88999999865 799999999999 58999
Q ss_pred EEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962 183 YVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 183 ~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 214 (216)
+||||..+.. .+..|+||+|+||++.
T Consensus 191 ilFGGFhd~n------r~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 191 ILFGGFHDSN------RDYIYYNDVYAFDLDT 216 (521)
T ss_pred EEEcceecCC------CceEEeeeeEEEeccc
Confidence 9999996542 2334889999999973
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.87 E-value=8.7e-21 Score=158.31 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=127.3
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEE-EEcCCeEEEEccCCCCC-------------------------
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT-RIGGNRTVLFGGRGVGY------------------------- 62 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~-~~~~~~iyv~GG~~~~~------------------------- 62 (216)
.++++|+||+.++ +|+++.. ++|.+|.+|+++ .+ +++||++||.....
T Consensus 83 ~~~~v~~Yd~~~~----~W~~~~~-~~p~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 83 VFDDVYRYDPKKN----SWQKLDT-RSPVGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred ecccEEEEECCCC----EEecCCC-CCCCcccceeEEEEe-CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 4789999999998 9999852 456777888877 57 68999999984210
Q ss_pred --------ceeCcEEEEecCCCCccEEEeccCcCCCCCCCCC-CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEec-
Q 027962 63 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT- 132 (216)
Q Consensus 63 --------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~- 132 (216)
...+++++||+.+ ++|+.+ +++|. +|.+|+++. .+++||++||..........++.|++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t--~~W~~~--------~~~p~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y~~~ 225 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPST--NQWRNL--------GENPFLGTAGSAIVH-KGNKLLLINGEIKPGLRTAEVKQYLFT 225 (346)
T ss_pred hCCChhHcCccceEEEEECCC--CceeEC--------ccCCCCcCCCceEEE-ECCEEEEEeeeeCCCccchheEEEEec
Confidence 0147899999999 999999 67775 688887777 89999999998644333455666654
Q ss_pred -CCCCccccccc-----------------------------------------------------cccccCcccCCceEe
Q 027962 133 -KAIPFTSVQQS-----------------------------------------------------MLDSRGLLLNMWKRL 158 (216)
Q Consensus 133 -~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~W~~~ 158 (216)
++++|...+.. -+.+|++.+++|+.+
T Consensus 226 ~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 226 GGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 56688622100 023788899999988
Q ss_pred ecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeec
Q 027962 159 RAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVEL 212 (216)
Q Consensus 159 ~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~ 212 (216)
... |.+|..|++++ .+++|||+||...... ..+++++|-+
T Consensus 306 ~~l---p~~~~~~~~~~--~~~~iyv~GG~~~~~~---------~~~~v~~~~~ 345 (346)
T TIGR03547 306 GKL---PQGLAYGVSVS--WNNGVLLIGGENSGGK---------AVTDVYLLSW 345 (346)
T ss_pred CCC---CCCceeeEEEE--cCCEEEEEeccCCCCC---------EeeeEEEEEe
Confidence 765 77888777665 6999999999854321 4567776654
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.86 E-value=2.7e-20 Score=155.30 Aligned_cols=159 Identities=20% Similarity=0.314 Sum_probs=107.1
Q ss_pred cccEEEEec--cCCccccceEEcccCCCC-CCCcCceEEEEcCCeEEEEccCCCCC-----ceeCcEEEEecCCCCccEE
Q 027962 10 LGDTWVLEL--SENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGY-----EVLNDVWFLDVYEGFFKWV 81 (216)
Q Consensus 10 ~~~~~~~d~--~~~~~~~~W~~~~~~~~p-~~r~~h~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~W~ 81 (216)
.+++++||+ .++ +|++++ ++| .+|.+|+++.+ +++|||+||..... ..++++|+||+.+ ++|+
T Consensus 28 ~~~~~~~d~~~~~~----~W~~l~--~~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~--~~W~ 98 (346)
T TIGR03547 28 GTSWYKLDLKKPSK----GWQKIA--DFPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK--NSWQ 98 (346)
T ss_pred CCeeEEEECCCCCC----CceECC--CCCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceecccEEEEECCC--CEEe
Confidence 368999997 344 899984 566 58999999999 58999999985321 2578999999999 9999
Q ss_pred EeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC--CCCCceEEEecCCCCccccc-------------ccccc
Q 027962 82 QIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR--RRKDDFWVLDTKAIPFTSVQ-------------QSMLD 146 (216)
Q Consensus 82 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 146 (216)
++. ..+|.+|.+|+++...+++||++||.+... ....++..++.....|.... ...+.
T Consensus 99 ~~~-------~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 99 KLD-------TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred cCC-------CCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 993 346777888877633899999999986320 01111111111111110000 01133
Q ss_pred ccCcccCCceEeecCCCCCC-CCcceeEEEecCCCEEEEEcccc
Q 027962 147 SRGLLLNMWKRLRAEGYKPN-CRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 147 ~~~~~~~~W~~~~~~~~~~~-~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
+||+.+++|+.+..+ |. +|.+|++++ .+++|||+||..
T Consensus 172 ~YDp~t~~W~~~~~~---p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 172 SYDPSTNQWRNLGEN---PFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred EEECCCCceeECccC---CCCcCCCceEEE--ECCEEEEEeeee
Confidence 334448899998765 43 678887777 589999999984
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.85 E-value=2.7e-20 Score=156.95 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=127.6
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEE-EcCCeEEEEccCCCCC-------------------------
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTR-IGGNRTVLFGGRGVGY------------------------- 62 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~-~~~~~iyv~GG~~~~~------------------------- 62 (216)
.++++|+||+.++ +|+++.. ..|.++.+|++++ . +++||++||.....
T Consensus 104 ~~~~v~~YD~~~n----~W~~~~~-~~p~~~~~~~~~~~~-~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 104 VFDDVYKYDPKTN----SWQKLDT-RSPVGLAGHVAVSLH-NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred EcccEEEEeCCCC----EEEeCCC-CCCCcccceEEEEee-CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 3689999999998 9999853 3467778888887 6 68999999984210
Q ss_pred --------ceeCcEEEEecCCCCccEEEeccCcCCCCCCCCC-CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEE--Ee
Q 027962 63 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARRRKDDFWV--LD 131 (216)
Q Consensus 63 --------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~--~~ 131 (216)
...+++++||+.+ ++|+.+ +.+|. +|.+|+++. .+++||++||....+....+++. +|
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t--~~W~~~--------~~~p~~~~~~~a~v~-~~~~iYv~GG~~~~~~~~~~~~~~~~~ 246 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPST--NQWKNA--------GESPFLGTAGSAVVI-KGNKLWLINGEIKPGLRTDAVKQGKFT 246 (376)
T ss_pred hcCChhhcCcCceEEEEECCC--CeeeEC--------CcCCCCCCCcceEEE-ECCEEEEEeeeECCCcCChhheEEEec
Confidence 1247899999999 999998 66775 678887777 89999999997544444455554 45
Q ss_pred cCCCCccccccc------------------------------------------------------cccccCcccCCceE
Q 027962 132 TKAIPFTSVQQS------------------------------------------------------MLDSRGLLLNMWKR 157 (216)
Q Consensus 132 ~~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~W~~ 157 (216)
+++.+|...+.. .+.+||+.+++|+.
T Consensus 247 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 247 GNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 577888622100 01258999999998
Q ss_pred eecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 158 LRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 158 ~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
+... |.+|..|++++ .+++|||+||...... ..+++++|+..
T Consensus 327 ~~~l---p~~r~~~~av~--~~~~iyv~GG~~~~~~---------~~~~v~~~~~~ 368 (376)
T PRK14131 327 VGEL---PQGLAYGVSVS--WNNGVLLIGGETAGGK---------AVSDVTLLSWD 368 (376)
T ss_pred cCcC---CCCccceEEEE--eCCEEEEEcCCCCCCc---------EeeeEEEEEEc
Confidence 8654 78898887666 6899999999753311 34678777754
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.83 E-value=3.7e-19 Score=150.05 Aligned_cols=143 Identities=21% Similarity=0.369 Sum_probs=105.5
Q ss_pred ccEEEEeccCCccccceEEcccCCCC-CCCcCceEEEEcCCeEEEEccCCC-C----CceeCcEEEEecCCCCccEEEec
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGV-G----YEVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p-~~r~~h~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
+.+++||++.. ..+|.++. ++| .+|.+|+++.+ +++|||+||... . ...++++|+||+.+ ++|+.+.
T Consensus 50 ~~~~~~d~~~~--~~~W~~l~--~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~ 122 (376)
T PRK14131 50 TSWYKLDLNAP--SKGWTKIA--AFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLD 122 (376)
T ss_pred CeEEEEECCCC--CCCeEECC--cCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCC
Confidence 56899998631 12899884 444 58999999999 589999999853 1 23578999999999 9999993
Q ss_pred cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--CC-------------------------------CCCceEEEe
Q 027962 85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--RR-------------------------------RKDDFWVLD 131 (216)
Q Consensus 85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~-------------------------------~~~~~~~~~ 131 (216)
...|.+|.+|+++++.+++||++||.+.. .. ..+++++||
T Consensus 123 -------~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD 195 (376)
T PRK14131 123 -------TRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYD 195 (376)
T ss_pred -------CCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEE
Confidence 23577788887766578999999998531 00 124556666
Q ss_pred cCCCCccccccccccccCcccCCceEeecCCCCCC-CCcceeEEEecCCCEEEEEccccC
Q 027962 132 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPN-CRSFHRACPDYSGRYLYVFGGMVD 190 (216)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~r~~h~~~~~~~~~~l~i~GG~~~ 190 (216)
+. +++|..+... |. +|.+|++++ .+++|||+||...
T Consensus 196 ~~------------------t~~W~~~~~~---p~~~~~~~a~v~--~~~~iYv~GG~~~ 232 (376)
T PRK14131 196 PS------------------TNQWKNAGES---PFLGTAGSAVVI--KGNKLWLINGEIK 232 (376)
T ss_pred CC------------------CCeeeECCcC---CCCCCCcceEEE--ECCEEEEEeeeEC
Confidence 55 8899987654 53 677777766 5889999999743
No 23
>PHA03098 kelch-like protein; Provisional
Probab=99.83 E-value=3e-19 Score=157.08 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=129.5
Q ss_pred cEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCC
Q 027962 12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIP 91 (216)
Q Consensus 12 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~ 91 (216)
.+.+|+..++ +|..+. +.| .+..|+++++ ++++|++||........+++++||+.+ ++|..+
T Consensus 265 ~~~~~~~~~~----~~~~~~--~~~-~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~-------- 326 (534)
T PHA03098 265 NYITNYSPLS----EINTII--DIH-YVYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV-------- 326 (534)
T ss_pred eeeecchhhh----hccccc--Ccc-ccccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC--------
Confidence 3445666664 787763 222 3455788888 589999999965555678999999999 999998
Q ss_pred CCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c---------------------------
Q 027962 92 AGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S--------------------------- 143 (216)
Q Consensus 92 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------- 143 (216)
+++|.+|.+|+++. .+++||++||.+. ....+++++||+.+.+|...++ +
T Consensus 327 ~~~~~~R~~~~~~~-~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~ 404 (534)
T PHA03098 327 PELIYPRKNPGVTV-FNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL 404 (534)
T ss_pred CCCCcccccceEEE-ECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc
Confidence 78899999999988 8999999999873 4567899999999999984432 0
Q ss_pred --cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 144 --MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 144 --~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
.+..||+.+++|+.+.+. |.+|.+|++++ .+++|||+||....... . ..+++++||..
T Consensus 405 ~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~~~-----~--~~~~v~~yd~~ 464 (534)
T PHA03098 405 LKTVECFSLNTNKWSKGSPL---PISHYGGCAIY--HDGKIYVIGGISYIDNI-----K--VYNIVESYNPV 464 (534)
T ss_pred cceEEEEeCCCCeeeecCCC---CccccCceEEE--ECCEEEEECCccCCCCC-----c--ccceEEEecCC
Confidence 167899999999998754 77898898877 58899999998533110 0 12457777754
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=8.1e-20 Score=152.50 Aligned_cols=158 Identities=25% Similarity=0.475 Sum_probs=130.3
Q ss_pred cceEEcc--cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCce
Q 027962 25 GSWQQLV--THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS 102 (216)
Q Consensus 25 ~~W~~~~--~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~ 102 (216)
.+|+++. +++.|.||-+|.+++|+ .-|+||||-++ -..+.+..|+..+ ++|..-. ..++.|.+.+.|.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaik-ELiviFGGGNE--GiiDELHvYNTat--nqWf~Pa-----vrGDiPpgcAA~G 86 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIK-ELIVIFGGGNE--GIIDELHVYNTAT--NQWFAPA-----VRGDIPPGCAAFG 86 (830)
T ss_pred cceEEEecccCCCCCccccchheeee-eeEEEecCCcc--cchhhhhhhcccc--ceeecch-----hcCCCCCchhhcc
Confidence 4899998 78899999999999995 57999998843 4567899999999 9997543 4589999998888
Q ss_pred EEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC----CCCCCCCcceeEEEecC
Q 027962 103 ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE----GYKPNCRSFHRACPDYS 178 (216)
Q Consensus 103 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~r~~h~~~~~~~ 178 (216)
+++ .+.+||+|||.-+.+.+.+|++.+... .+.|+++.+. |..|+||.+|+..+ .
T Consensus 87 fvc-dGtrilvFGGMvEYGkYsNdLYELQas------------------RWeWkrlkp~~p~nG~pPCPRlGHSFsl--~ 145 (830)
T KOG4152|consen 87 FVC-DGTRILVFGGMVEYGKYSNDLYELQAS------------------RWEWKRLKPKTPKNGPPPCPRLGHSFSL--V 145 (830)
T ss_pred eEe-cCceEEEEccEeeeccccchHHHhhhh------------------hhhHhhcCCCCCCCCCCCCCccCceeEE--e
Confidence 888 999999999999999999999887766 6688887654 56688999999998 6
Q ss_pred CCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962 179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 179 ~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 214 (216)
+++.|+|||..++..+..... -+|.||+|.+++.+
T Consensus 146 gnKcYlFGGLaNdseDpknNv-PrYLnDlY~leL~~ 180 (830)
T KOG4152|consen 146 GNKCYLFGGLANDSEDPKNNV-PRYLNDLYILELRP 180 (830)
T ss_pred ccEeEEeccccccccCccccc-chhhcceEEEEecc
Confidence 899999999976544433333 35999999999873
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=6.6e-19 Score=147.11 Aligned_cols=172 Identities=23% Similarity=0.381 Sum_probs=138.8
Q ss_pred ccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 9 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
-..++..|+.++| +|-... .++.|++-+-|.++..+ ++||+|||..+...+.|++|.+.... -.|.++. .+
T Consensus 55 iiDELHvYNTatn----qWf~PavrGDiPpgcAA~GfvcdG-trilvFGGMvEYGkYsNdLYELQasR--WeWkrlk-p~ 126 (830)
T KOG4152|consen 55 IIDELHVYNTATN----QWFAPAVRGDIPPGCAAFGFVCDG-TRILVFGGMVEYGKYSNDLYELQASR--WEWKRLK-PK 126 (830)
T ss_pred chhhhhhhccccc----eeecchhcCCCCCchhhcceEecC-ceEEEEccEeeeccccchHHHhhhhh--hhHhhcC-CC
Confidence 3678889999998 998777 78999999999999995 79999999977788899998877665 6677764 22
Q ss_pred CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--------CCCCCceEEEecCCCCccccccccccccCcccCCceEee
Q 027962 88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR 159 (216)
Q Consensus 88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 159 (216)
....+.+|++|.+|+..+ .+.+-|+|||...+ ..+++|++++++.. ....-.|+.+.
T Consensus 127 ~p~nG~pPCPRlGHSFsl-~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~--------------Gsgvv~W~ip~ 191 (830)
T KOG4152|consen 127 TPKNGPPPCPRLGHSFSL-VGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRP--------------GSGVVAWDIPI 191 (830)
T ss_pred CCCCCCCCCCccCceeEE-eccEeEEeccccccccCcccccchhhcceEEEEecc--------------CCceEEEeccc
Confidence 334567899999999988 99999999997321 24689999998862 22256899999
Q ss_pred cCCCCCCCCcceeEEEecCC----CEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962 160 AEGYKPNCRSFHRACPDYSG----RYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 214 (216)
Q Consensus 160 ~~~~~~~~r~~h~~~~~~~~----~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~ 214 (216)
..|-.|.+|..|++++...+ .++||+||++.. ..+|+|.+|++.
T Consensus 192 t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-----------RLgDLW~Ldl~T 239 (830)
T KOG4152|consen 192 TYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-----------RLGDLWTLDLDT 239 (830)
T ss_pred ccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-----------cccceeEEecce
Confidence 88999999999999987443 389999999755 568999999874
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.67 E-value=1.2e-15 Score=132.50 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=88.1
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 89 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~ 89 (216)
.+++++||+.++ +|..+ .++|.+|.+|+++++ +++||++||... . .+.+.+||+.+ ++|+.+
T Consensus 330 ~~sve~ydp~~n----~W~~~--~~l~~~r~~~~~~~~-~g~IYviGG~~~-~--~~~ve~ydp~~--~~W~~~------ 391 (480)
T PHA02790 330 PTSVERWFHGDA----AWVNM--PSLLKPRCNPAVASI-NNVIYVIGGHSE-T--DTTTEYLLPNH--DQWQFG------ 391 (480)
T ss_pred CCceEEEECCCC----eEEEC--CCCCCCCcccEEEEE-CCEEEEecCcCC-C--CccEEEEeCCC--CEEEeC------
Confidence 367999999997 99988 478899999999999 689999999842 2 36789999999 999999
Q ss_pred CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc
Q 027962 90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ 141 (216)
Q Consensus 90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.++|.+|.+|++++ .+++||++||. +++||+++++|+..+
T Consensus 392 --~~m~~~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 392 --PSTYYPHYKSCALV-FGRRLFLVGRN---------AEFYCESSNTWTLID 431 (480)
T ss_pred --CCCCCccccceEEE-ECCEEEEECCc---------eEEecCCCCcEeEcC
Confidence 78999999998888 99999999984 478999999998443
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=1.1e-13 Score=111.69 Aligned_cols=173 Identities=19% Similarity=0.267 Sum_probs=121.6
Q ss_pred CccCCCCcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCC----CceeCcEEEEecCCC
Q 027962 1 MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVG----YEVLNDVWFLDVYEG 76 (216)
Q Consensus 1 ~~~g~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~d~~~~ 76 (216)
+|+|+.++ +.+.+|++.. ...|+++.. -+..+|.+.+++.+ +++||+|||.+.. ...++++|+||+.+
T Consensus 51 VGLGs~G~---afy~ldL~~~--~k~W~~~a~-FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~- 122 (381)
T COG3055 51 VGLGSAGT---AFYVLDLKKP--GKGWTKIAD-FPGGARNQAVAAVI-GGKLYVFGGYGKSVSSSPQVFNDAYRYDPST- 122 (381)
T ss_pred EEeccCCc---cceehhhhcC--CCCceEccc-CCCcccccchheee-CCeEEEeeccccCCCCCceEeeeeEEecCCC-
Confidence 35665555 7888888752 248999863 34568999999999 6899999998532 34699999999999
Q ss_pred CccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--CCCCCceEEEecCCCCccccc-------c-----
Q 027962 77 FFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--RRRKDDFWVLDTKAIPFTSVQ-------Q----- 142 (216)
Q Consensus 77 ~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~~~~~~~~-------~----- 142 (216)
++|.++. ...|....++.++...+.+++++||.+.. +.++.|+-..+-+...+.... .
T Consensus 123 -nsW~kl~-------t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~ 194 (381)
T COG3055 123 -NSWHKLD-------TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFF 194 (381)
T ss_pred -Chhheec-------cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcc
Confidence 9999995 55677888888888444499999998642 334455555444433332211 0
Q ss_pred -ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCC
Q 027962 143 -SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLV 193 (216)
Q Consensus 143 -~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~ 193 (216)
..++.|+|.+++|+.+...+ -.++++++.+. .++++.++-|+.-+..
T Consensus 195 n~ev~sy~p~~n~W~~~G~~p--f~~~aGsa~~~--~~n~~~lInGEiKpGL 242 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENP--FYGNAGSAVVI--KGNKLTLINGEIKPGL 242 (381)
T ss_pred cccccccccccchhhhcCcCc--ccCccCcceee--cCCeEEEEcceecCCc
Confidence 24999999999999886442 24556543333 7788999988865544
No 28
>PF13964 Kelch_6: Kelch motif
Probab=99.35 E-value=3.4e-12 Score=76.31 Aligned_cols=50 Identities=32% Similarity=0.463 Sum_probs=45.0
Q ss_pred CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCC
Q 027962 38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR 98 (216)
Q Consensus 38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r 98 (216)
||.+|+++.+ +++|||+||.......++++++||+++ ++|+++ +++|.+|
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~--------~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQL--------PPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCC--CcEEEC--------CCCCCCC
Confidence 6899999999 589999999964477899999999999 999999 7888887
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.30 E-value=7e-12 Score=105.23 Aligned_cols=157 Identities=24% Similarity=0.372 Sum_probs=114.4
Q ss_pred ccceEEcc-cC-------CCCCCCcCceEEEEc-CCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCC
Q 027962 24 FGSWQQLV-TH-------PSPPARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGF 94 (216)
Q Consensus 24 ~~~W~~~~-~~-------~~p~~r~~h~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 94 (216)
+..|.++. .. .-|--|.+|-|+.-. ++.+|++||.+ .-+.+.|.|.|...+ ++|+.+. .....
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e--~~W~~iN-----~~t~~ 309 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKE--NQWTCIN-----RDTEG 309 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCc--ceeEEee-----cCCCC
Confidence 45888876 22 356779999999873 34799999995 566689999999999 9999996 66668
Q ss_pred CCCCCCceEEEE-eCCEEEEEeCcCCC-----CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCC---CCC
Q 027962 95 SLPRVGHSATLI-LGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG---YKP 165 (216)
Q Consensus 95 p~~r~~~~~~~~-~~~~l~v~GG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~ 165 (216)
|..|.+|-+++. .+.+||+.|-+-.. .....|+|+||.. ++.|.-+.-.. -.|
T Consensus 310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~------------------~~~W~~ls~dt~~dGGP 371 (723)
T KOG2437|consen 310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID------------------TNTWMLLSEDTAADGGP 371 (723)
T ss_pred CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC------------------CceeEEecccccccCCc
Confidence 999999999883 33489999865321 2335799999999 66777665432 246
Q ss_pred CCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 166 NCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 166 ~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
..-+.|.++++...+.+|||||..-...+ . -..-+|.|+..
T Consensus 372 ~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e--~-----~f~GLYaf~~~ 412 (723)
T KOG2437|consen 372 KLVFDHQMCVDSEKHMIYVFGGRILTCNE--P-----QFSGLYAFNCQ 412 (723)
T ss_pred ceeecceeeEecCcceEEEecCeeccCCC--c-----cccceEEEecC
Confidence 66789999997555579999999543221 1 22356666654
No 30
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.22 E-value=1.8e-11 Score=72.84 Aligned_cols=44 Identities=39% Similarity=0.770 Sum_probs=30.6
Q ss_pred CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
||.+|+++.+++++||||||.......++++|+||+++ ++|+++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC
Confidence 79999999996689999999976667899999999999 999999
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.21 E-value=5e-12 Score=106.09 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=116.0
Q ss_pred cccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEc-CCeEEEEccCCC-----CCceeCcEEEEecCCCCccEEE
Q 027962 10 LGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIG-GNRTVLFGGRGV-----GYEVLNDVWFLDVYEGFFKWVQ 82 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~-~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~~~W~~ 82 (216)
+.|+|.|....+ +|..+. -+..|-.|+-|.|+... ..++|+.|-+-. ....-+|+|+||..+ +.|..
T Consensus 287 l~DFW~Y~v~e~----~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~--~~W~~ 360 (723)
T KOG2437|consen 287 LADFWAYSVKEN----QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDT--NTWML 360 (723)
T ss_pred HHHHHhhcCCcc----eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCC--ceeEE
Confidence 789999999998 999887 34578899999999862 238999998721 122357899999999 99999
Q ss_pred eccCcCCCC-CCCCCCCCCceEEEEeCCE--EEEEeCcCC--CCCCCCceEEEecCCCCccccccccccccCcccCCceE
Q 027962 83 IPYELQNIP-AGFSLPRVGHSATLILGGR--VLIYGGEDS--ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKR 157 (216)
Q Consensus 83 ~~~~~~~~~-~~~p~~r~~~~~~~~~~~~--l~v~GG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 157 (216)
++ +++. ..-|...+.|.+++ .+++ +|||||+.- +......+++|++. ...|+.
T Consensus 361 ls---~dt~~dGGP~~vfDHqM~V-d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~------------------~~~w~~ 418 (723)
T KOG2437|consen 361 LS---EDTAADGGPKLVFDHQMCV-DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ------------------CQTWKL 418 (723)
T ss_pred ec---ccccccCCcceeecceeeE-ecCcceEEEecCeeccCCCccccceEEEecC------------------CccHHH
Confidence 85 3232 23588899999999 5555 999999842 33567889999998 668876
Q ss_pred eecC-----C--CCCCCCcceeEEEecCCCEEEEEcccc
Q 027962 158 LRAE-----G--YKPNCRSFHRACPDYSGRYLYVFGGMV 189 (216)
Q Consensus 158 ~~~~-----~--~~~~~r~~h~~~~~~~~~~l~i~GG~~ 189 (216)
+... + +....|.+|.+.+...++++|+|||..
T Consensus 419 l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 419 LREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 5432 1 113458899999988888999999975
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.20 E-value=3.1e-10 Score=91.97 Aligned_cols=162 Identities=19% Similarity=0.302 Sum_probs=116.1
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCC-----------------------------
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV----------------------------- 60 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~----------------------------- 60 (216)
++|+|+||+++| +|.++.+ ..|....+++++.+++.+||++||.+.
T Consensus 112 ~nd~Y~y~p~~n----sW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 112 FNDAYRYDPSTN----SWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred eeeeEEecCCCC----hhheecc-ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 799999999998 9999974 445668999999996558999999732
Q ss_pred ----CCceeCcEEEEecCCCCccEEEeccCcCCCCC-CCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecC--
Q 027962 61 ----GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPA-GFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK-- 133 (216)
Q Consensus 61 ----~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~-- 133 (216)
+......++.|++++ ++|+.+ + .+-.++++++.+. .++++.++-|.-.++.+...+++++..
T Consensus 187 ~~~~dy~~n~ev~sy~p~~--n~W~~~--------G~~pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPST--NQWRNL--------GENPFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred CCHHHhccccccccccccc--chhhhc--------CcCcccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccC
Confidence 122466788999999 999988 5 4445677755444 778899999986666666666666544
Q ss_pred CCCcccccc----c----c-----------------------------------------------ccccCcccCCceEe
Q 027962 134 AIPFTSVQQ----S----M-----------------------------------------------LDSRGLLLNMWKRL 158 (216)
Q Consensus 134 ~~~~~~~~~----~----~-----------------------------------------------~~~~~~~~~~W~~~ 158 (216)
..+|..... . + |..++ .+.|+.+
T Consensus 256 ~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~ 333 (381)
T COG3055 256 NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV 333 (381)
T ss_pred ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee
Confidence 556653311 0 0 55555 7888887
Q ss_pred ecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCC
Q 027962 159 RAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQ 194 (216)
Q Consensus 159 ~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~ 194 (216)
... |.++..-.++. .++.+|++||+..+...
T Consensus 334 GeL---p~~l~YG~s~~--~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 334 GEL---PQGLAYGVSLS--YNNKVLLIGGETSGGKA 364 (381)
T ss_pred ccc---CCCccceEEEe--cCCcEEEEccccCCCee
Confidence 554 66765444444 68999999999766543
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.19 E-value=9.1e-11 Score=69.72 Aligned_cols=46 Identities=41% Similarity=0.777 Sum_probs=41.9
Q ss_pred CeEEEEccCC-CCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEE
Q 027962 50 NRTVLFGGRG-VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL 105 (216)
Q Consensus 50 ~~iyv~GG~~-~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~ 105 (216)
+++|||||.+ .....++++|+||+.+ .+|+++ +++|.+|.+|++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~--------~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI--------GDLPPPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC--------CCCCCCccceEEEE
Confidence 6899999996 4678899999999999 999999 78999999999986
No 34
>PLN02772 guanylate kinase
Probab=99.10 E-value=6.9e-10 Score=92.60 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeE
Q 027962 94 FSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRA 173 (216)
Q Consensus 94 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~ 173 (216)
-+.++..|+++. .++++||+||.++.....+++++||.. +..|..+...|..|.+|-+|++
T Consensus 21 ~~~~~~~~tav~-igdk~yv~GG~~d~~~~~~~v~i~D~~------------------t~~W~~P~V~G~~P~~r~GhSa 81 (398)
T PLN02772 21 GVKPKNRETSVT-IGDKTYVIGGNHEGNTLSIGVQILDKI------------------TNNWVSPIVLGTGPKPCKGYSA 81 (398)
T ss_pred cCCCCCcceeEE-ECCEEEEEcccCCCccccceEEEEECC------------------CCcEecccccCCCCCCCCcceE
Confidence 455888899999 999999999998755578999999999 7899999999999999999999
Q ss_pred EEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962 174 CPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213 (216)
Q Consensus 174 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 213 (216)
+++ .++.|+|+++.... ++++|.+++.
T Consensus 82 ~v~-~~~rilv~~~~~~~------------~~~~w~l~~~ 108 (398)
T PLN02772 82 VVL-NKDRILVIKKGSAP------------DDSIWFLEVD 108 (398)
T ss_pred EEE-CCceEEEEeCCCCC------------ccceEEEEcC
Confidence 986 67788998866433 3678887775
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.07 E-value=1.9e-10 Score=67.66 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=39.1
Q ss_pred CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
||.+|+++.+ +++|||+||.......++++++||+.+ ++|+++
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~ 43 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPET--NTWEEL 43 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBESTSSBEEEEEEEETTT--TEEEEE
T ss_pred CCccCEEEEE-CCEEEEEeeecccCceeeeEEEEeCCC--CEEEEc
Confidence 6899999999 589999999976578899999999999 999998
No 36
>PF13964 Kelch_6: Kelch motif
Probab=99.06 E-value=6e-10 Score=66.44 Aligned_cols=50 Identities=36% Similarity=0.753 Sum_probs=42.9
Q ss_pred CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCC
Q 027962 97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR 168 (216)
Q Consensus 97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r 168 (216)
+|.+|++++ .+++||++||........+++++||++ +++|+++.++ |.+|
T Consensus 1 pR~~~s~v~-~~~~iyv~GG~~~~~~~~~~v~~yd~~------------------t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVV-VGGKIYVFGGYDNSGKYSNDVERYDPE------------------TNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEE-ECCEEEEECCCCCCCCccccEEEEcCC------------------CCcEEECCCC---CCCC
Confidence 688999988 999999999997656789999999999 7799999765 5555
No 37
>PLN02772 guanylate kinase
Probab=99.04 E-value=3.1e-09 Score=88.78 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=74.7
Q ss_pred CCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEE
Q 027962 34 PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLI 113 (216)
Q Consensus 34 ~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v 113 (216)
-.+.|+..|+++.++ +++|||||........+.+++||..+ .+|..-. ..+..|.+|.+|+++++.+++|+|
T Consensus 20 ~~~~~~~~~tav~ig-dk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~-----V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 20 FGVKPKNRETSVTIG-DKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPI-----VLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred ccCCCCCcceeEEEC-CEEEEEcccCCCccccceEEEEECCC--CcEeccc-----ccCCCCCCCCcceEEEECCceEEE
Confidence 345689999999995 79999999865444789999999999 9998765 559999999999999978899999
Q ss_pred EeCcCCCCCCCCceEEEecCC
Q 027962 114 YGGEDSARRRKDDFWVLDTKA 134 (216)
Q Consensus 114 ~GG~~~~~~~~~~~~~~~~~~ 134 (216)
+++.... -.++|.+.+.+
T Consensus 92 ~~~~~~~---~~~~w~l~~~t 109 (398)
T PLN02772 92 IKKGSAP---DDSIWFLEVDT 109 (398)
T ss_pred EeCCCCC---ccceEEEEcCC
Confidence 9876433 37788888774
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.03 E-value=6.7e-10 Score=65.96 Aligned_cols=47 Identities=38% Similarity=0.740 Sum_probs=40.4
Q ss_pred CCEEEEEeCcC-CCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEE
Q 027962 108 GGRVLIYGGED-SARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACP 175 (216)
Q Consensus 108 ~~~l~v~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~ 175 (216)
+++||||||++ .....++++|+||+. +.+|+++ ++.|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~------------------~~~W~~~---~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD------------------TNTWTRI---GDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC------------------CCEEEEC---CCCCCCccceEEEE
Confidence 46899999998 456788999999999 7799988 55699999999886
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.03 E-value=1e-09 Score=65.18 Aligned_cols=43 Identities=33% Similarity=0.652 Sum_probs=38.8
Q ss_pred CCcCceEEEEcCCeEEEEccC--CCCCceeCcEEEEecCCCCccEEEe
Q 027962 38 ARSGHSLTRIGGNRTVLFGGR--GVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 38 ~r~~h~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
||.+|+++++ +++||||||+ .......++++.||+++ ++|+.+
T Consensus 1 ~r~~hs~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t--~~W~~~ 45 (49)
T PF07646_consen 1 PRYGHSAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTET--NQWTEL 45 (49)
T ss_pred CccceEEEEE-CCEEEEECCcccCCCCcccceeEEEECCC--CEEeec
Confidence 6899999999 6899999999 44567799999999999 999998
No 40
>PF13854 Kelch_5: Kelch motif
Probab=98.98 E-value=1.8e-09 Score=61.84 Aligned_cols=40 Identities=35% Similarity=0.588 Sum_probs=35.4
Q ss_pred CCCCCcCceEEEEcCCeEEEEccCC-CCCceeCcEEEEecCC
Q 027962 35 SPPARSGHSLTRIGGNRTVLFGGRG-VGYEVLNDVWFLDVYE 75 (216)
Q Consensus 35 ~p~~r~~h~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~d~~~ 75 (216)
+|.||.+|+++.+ +++||||||.. .....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999 58999999997 3678899999999876
No 41
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.97 E-value=1.6e-08 Score=79.82 Aligned_cols=118 Identities=17% Similarity=0.287 Sum_probs=80.1
Q ss_pred EEEEccCCCCCceeCcEEEEecCCCC-ccEEEeccCcCCCCCCCCCCCCCceEEEE-eC--CEEEEEeCcCCC-------
Q 027962 52 TVLFGGRGVGYEVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLI-LG--GRVLIYGGEDSA------- 120 (216)
Q Consensus 52 iyv~GG~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~------- 120 (216)
.++.||++.+.+..+++|.+.+.+.. ++=..+.+.+....++.|.+|++|++.++ .. ...++|||+.-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 67789999888999999999776511 22222333344567999999999999886 22 348999998531
Q ss_pred ------CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962 121 ------RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 190 (216)
Q Consensus 121 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~ 190 (216)
.....+++.+|++ -..+. .-..++...+.+.|.+.+ .++.+|++||+.-
T Consensus 121 enWNsVvDC~P~VfLiDle------------------FGC~t-ah~lpEl~dG~SFHvsla--r~D~VYilGGHsl 175 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLE------------------FGCCT-AHTLPELQDGQSFHVSLA--RNDCVYILGGHSL 175 (337)
T ss_pred hhcceeccCCCeEEEEecc------------------ccccc-cccchhhcCCeEEEEEEe--cCceEEEEccEEc
Confidence 1123456666665 43333 233344456778888877 7899999999953
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.94 E-value=6.8e-10 Score=65.90 Aligned_cols=46 Identities=39% Similarity=0.822 Sum_probs=30.0
Q ss_pred CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeec
Q 027962 97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA 160 (216)
Q Consensus 97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 160 (216)
||++|+++.+.+++||||||++.....++++++||++ +++|+++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~------------------~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIE------------------TNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETT------------------TTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECC------------------CCEEEECCC
Confidence 6999999985579999999998766789999999999 779988844
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.90 E-value=4.5e-09 Score=62.35 Aligned_cols=46 Identities=41% Similarity=0.894 Sum_probs=39.3
Q ss_pred CCCCceEEEEeCCEEEEEeCc--CCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC
Q 027962 97 PRVGHSATLILGGRVLIYGGE--DSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE 161 (216)
Q Consensus 97 ~r~~~~~~~~~~~~l~v~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 161 (216)
+|++|++++ .+++||||||+ .......+++++||++ +++|+.++++
T Consensus 1 ~r~~hs~~~-~~~kiyv~GG~~~~~~~~~~~~v~~~d~~------------------t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVV-LDGKIYVFGGYGTDNGGSSSNDVWVFDTE------------------TNQWTELSPM 48 (49)
T ss_pred CccceEEEE-ECCEEEEECCcccCCCCcccceeEEEECC------------------CCEEeecCCC
Confidence 689999998 99999999999 4456778999999999 6788887664
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.83 E-value=9.9e-09 Score=58.77 Aligned_cols=39 Identities=36% Similarity=0.718 Sum_probs=35.3
Q ss_pred CCCCCCCceEEEEeCCEEEEEeCcC-CCCCCCCceEEEecC
Q 027962 94 FSLPRVGHSATLILGGRVLIYGGED-SARRRKDDFWVLDTK 133 (216)
Q Consensus 94 ~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~~~~~ 133 (216)
+|.+|++|++++ .+++||||||.+ ......+|+|++|+.
T Consensus 1 ~P~~R~~hs~~~-~~~~iyi~GG~~~~~~~~~~d~~~l~l~ 40 (42)
T PF13854_consen 1 IPSPRYGHSAVV-VGNNIYIFGGYSGNNNSYSNDLYVLDLP 40 (42)
T ss_pred CCCCccceEEEE-ECCEEEEEcCccCCCCCEECcEEEEECC
Confidence 488999999999 899999999998 367789999999987
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.75 E-value=1.1e-08 Score=59.93 Aligned_cols=46 Identities=30% Similarity=0.649 Sum_probs=39.6
Q ss_pred CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC
Q 027962 97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE 161 (216)
Q Consensus 97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 161 (216)
+|.+|++++ .+++||++||.+......+++++||+. +++|++++++
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~------------------~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDGNNQPTNSVEVYDPE------------------TNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBESTSSBEEEEEEEETT------------------TTEEEEEEEE
T ss_pred CCccCEEEE-ECCEEEEEeeecccCceeeeEEEEeCC------------------CCEEEEcCCC
Confidence 588899988 999999999998767788999999999 7788888764
No 46
>smart00612 Kelch Kelch domain.
Probab=98.59 E-value=1.3e-07 Score=55.03 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=38.5
Q ss_pred eEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEE
Q 027962 51 RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL 105 (216)
Q Consensus 51 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~ 105 (216)
+||++||.. .....+++++||+.+ ++|+.+ .++|.+|..|++++
T Consensus 1 ~iyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~--------~~~~~~r~~~~~~~ 44 (47)
T smart00612 1 KIYVVGGFD-GGQRLKSVEVYDPET--NKWTPL--------PSMPTPRSGHGVAV 44 (47)
T ss_pred CEEEEeCCC-CCceeeeEEEECCCC--CeEccC--------CCCCCccccceEEE
Confidence 489999985 356689999999999 999998 78999999998877
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.46 E-value=1.1e-05 Score=63.96 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=74.9
Q ss_pred cccEEEEeccCCcc----ccceEEcc-cCCCCCCCcCceEEEE---cCCeEEEEccCCC-------------CCceeCcE
Q 027962 10 LGDTWVLELSENFC----FGSWQQLV-THPSPPARSGHSLTRI---GGNRTVLFGGRGV-------------GYEVLNDV 68 (216)
Q Consensus 10 ~~~~~~~d~~~~~~----~~~W~~~~-~~~~p~~r~~h~~~~~---~~~~iyv~GG~~~-------------~~~~~~~~ 68 (216)
.+++|++...+..+ +....... .++.|.+|++|++-++ ++.-.++|||+.- --++...+
T Consensus 54 S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~V 133 (337)
T PF03089_consen 54 SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQV 133 (337)
T ss_pred ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeE
Confidence 56788877664321 23333333 6899999999998776 2234899999820 11245668
Q ss_pred EEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCC-CCCCCCceEEEecC
Q 027962 69 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS-ARRRKDDFWVLDTK 133 (216)
Q Consensus 69 ~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~~~~~ 133 (216)
+++|++- ...+.- .-+...-+...|.+.. .++.+|++||..- .+.+...++++.++
T Consensus 134 fLiDleF--GC~tah------~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 134 FLIDLEF--GCCTAH------TLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred EEEeccc--cccccc------cchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEe
Confidence 8888876 544433 1134455667787777 9999999999853 24456677776554
No 48
>smart00612 Kelch Kelch domain.
Probab=98.13 E-value=3.8e-06 Score=48.66 Aligned_cols=45 Identities=29% Similarity=0.408 Sum_probs=35.8
Q ss_pred EEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEe
Q 027962 110 RVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPD 176 (216)
Q Consensus 110 ~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~ 176 (216)
+||++||.+. ....+++++||+. +++|+++..+ +.+|..|+++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~------------------~~~W~~~~~~---~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPE------------------TNKWTPLPSM---PTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCC------------------CCeEccCCCC---CCccccceEEEe
Confidence 4899999864 4567889999988 7799988754 788988887763
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.41 E-value=0.0018 Score=51.32 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=61.2
Q ss_pred EEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCC--CCccEEEeccCcCCC
Q 027962 13 TWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE--GFFKWVQIPYELQNI 90 (216)
Q Consensus 13 ~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~~~ 90 (216)
-..||+.++ +++.+. ...-..-.+...+.++++++.||... . .+.+-.|++.. ....|.+..
T Consensus 48 s~~yD~~tn----~~rpl~---v~td~FCSgg~~L~dG~ll~tGG~~~-G--~~~ir~~~p~~~~~~~~w~e~~------ 111 (243)
T PF07250_consen 48 SVEYDPNTN----TFRPLT---VQTDTFCSGGAFLPDGRLLQTGGDND-G--NKAIRIFTPCTSDGTCDWTESP------ 111 (243)
T ss_pred EEEEecCCC----cEEecc---CCCCCcccCcCCCCCCCEEEeCCCCc-c--ccceEEEecCCCCCCCCceECc------
Confidence 345899997 888764 22222223334455789999999843 2 23455666531 125798874
Q ss_pred CCCCCCCCCCceEEEEeCCEEEEEeCcC
Q 027962 91 PAGFSLPRVGHSATLILGGRVLIYGGED 118 (216)
Q Consensus 91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 118 (216)
..|..+|.+.++..+.+++++|+||..
T Consensus 112 -~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 112 -NDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred -ccccCCCccccceECCCCCEEEEeCcC
Confidence 458999999999888999999999986
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.38 E-value=0.0072 Score=47.94 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=62.5
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecC-C---CCccEEEecc
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-E---GFFKWVQIPY 85 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~-~---~~~~W~~~~~ 85 (216)
.+.+-.|++.+....-.|.... ..+..+|.+.+++.+.+++++|+||... ..+.|-+. . ....|..+.
T Consensus 90 ~~~ir~~~p~~~~~~~~w~e~~-~~m~~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~- 161 (243)
T PF07250_consen 90 NKAIRIFTPCTSDGTCDWTESP-NDMQSGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLS- 161 (243)
T ss_pred ccceEEEecCCCCCCCCceECc-ccccCCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecch-
Confidence 4567778876522234787764 3488999999999999999999999952 11222221 1 002222221
Q ss_pred CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecC
Q 027962 86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 133 (216)
Q Consensus 86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 133 (216)
......+..-|-+...+ .+++|++|+... ..+||..
T Consensus 162 ---~~~~~~~~nlYP~~~ll-PdG~lFi~an~~--------s~i~d~~ 197 (243)
T PF07250_consen 162 ---QTSDTLPNNLYPFVHLL-PDGNLFIFANRG--------SIIYDYK 197 (243)
T ss_pred ---hhhccCccccCceEEEc-CCCCEEEEEcCC--------cEEEeCC
Confidence 01112344445444444 999999998863 2677776
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.17 E-value=0.38 Score=37.62 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=57.9
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEE-eccCcCC
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQN 89 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~ 89 (216)
..+.+|+..++ +|+.+.. .++........+.+ ++.+|-+.-... ......|..||+.+ .+|+. +.
T Consensus 70 ~~~~Vys~~~~----~Wr~~~~-~~~~~~~~~~~v~~-~G~lyw~~~~~~-~~~~~~IvsFDl~~--E~f~~~i~----- 135 (230)
T TIGR01640 70 SEHQVYTLGSN----SWRTIEC-SPPHHPLKSRGVCI-NGVLYYLAYTLK-TNPDYFIVSFDVSS--ERFKEFIP----- 135 (230)
T ss_pred ccEEEEEeCCC----Ccccccc-CCCCccccCCeEEE-CCEEEEEEEECC-CCCcEEEEEEEccc--ceEeeeee-----
Confidence 46788999996 9999852 12211122236677 578888764421 11112689999999 99995 63
Q ss_pred CCCCCCCCCC----CceEEEEeCCEEEEEeCcCCCCCCCCceEEEe
Q 027962 90 IPAGFSLPRV----GHSATLILGGRVLIYGGEDSARRRKDDFWVLD 131 (216)
Q Consensus 90 ~~~~~p~~r~----~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 131 (216)
+|..+. ...... .+++|.+....... ..-++|+++
T Consensus 136 ----~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~--~~~~IWvl~ 174 (230)
T TIGR01640 136 ----LPCGNSDSVDYLSLIN-YKGKLAVLKQKKDT--NNFDLWVLN 174 (230)
T ss_pred ----cCccccccccceEEEE-ECCEEEEEEecCCC--CcEEEEEEC
Confidence 233221 222333 67888776553221 124677775
No 52
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.77 E-value=0.57 Score=38.15 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=61.9
Q ss_pred ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
.+..+..||..+. +|..+..+ -.... .++...+++++|+.|-.+........+..||.++ .+|+.+...
T Consensus 14 ~C~~lC~yd~~~~----qW~~~g~~--i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~-- 82 (281)
T PF12768_consen 14 PCPGLCLYDTDNS----QWSSPGNG--ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGG-- 82 (281)
T ss_pred CCCEEEEEECCCC----EeecCCCC--ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCc--
Confidence 4778889999996 99987432 11221 3344445667888876643332456688999999 999988400
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEe
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD 131 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 131 (216)
.....|.+.............+++.|.. ..+ ..-+..||
T Consensus 83 -~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d 121 (281)
T PF12768_consen 83 -SSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD 121 (281)
T ss_pred -ccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc
Confidence 0013455542222222144567776654 211 33455565
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.21 E-value=3.2 Score=32.34 Aligned_cols=109 Identities=11% Similarity=0.040 Sum_probs=55.8
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCC-CcCc-eEEEE----cCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPA-RSGH-SLTRI----GGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~-r~~h-~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
..+.+.||.|. +|..++..+.+.. ...+ ....+ ++=+++.+.... .......+..|++.+ +.|+.+.
T Consensus 14 ~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~--~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTG----QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGS--NSWRTIE 86 (230)
T ss_pred CcEEEECCCCC----CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCC--CCccccc
Confidence 46788888885 9998852111101 1111 12222 111344443321 111234678999999 9999983
Q ss_pred cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
...+........+. .++.+|-+.-... ......+..||+.++
T Consensus 87 -------~~~~~~~~~~~~v~-~~G~lyw~~~~~~-~~~~~~IvsFDl~~E 128 (230)
T TIGR01640 87 -------CSPPHHPLKSRGVC-INGVLYYLAYTLK-TNPDYFIVSFDVSSE 128 (230)
T ss_pred -------cCCCCccccCCeEE-ECCEEEEEEEECC-CCCcEEEEEEEcccc
Confidence 11222111222444 7887777764321 111236889999943
No 54
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.33 E-value=2.5 Score=34.43 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred eeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCce--EEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc
Q 027962 64 VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS--ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ 141 (216)
Q Consensus 64 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.-+.+-.||... .+|+... .- ..+.. .....+++||+.|-....+.....+..||++
T Consensus 14 ~C~~lC~yd~~~--~qW~~~g--------~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~-------- 72 (281)
T PF12768_consen 14 PCPGLCLYDTDN--SQWSSPG--------NG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK-------- 72 (281)
T ss_pred CCCEEEEEECCC--CEeecCC--------CC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC--------
Confidence 357789999999 9999883 22 22222 2222577888877554434346678899998
Q ss_pred cccccccCcccCCceEeecC--CCCCCCCcceeEEEe-cCCCEEEEEccc
Q 027962 142 QSMLDSRGLLLNMWKRLRAE--GYKPNCRSFHRACPD-YSGRYLYVFGGM 188 (216)
Q Consensus 142 ~~~~~~~~~~~~~W~~~~~~--~~~~~~r~~h~~~~~-~~~~~l~i~GG~ 188 (216)
+.+|..+... ...|.+- .+..+. .....+++.|..
T Consensus 73 ----------~~~w~~~~~~~s~~ipgpv--~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 73 ----------NQTWSSLGGGSSNSIPGPV--TALTFISNDGSNFWVAGRS 110 (281)
T ss_pred ----------CCeeeecCCcccccCCCcE--EEEEeeccCCceEEEecee
Confidence 6688877652 1233332 223222 123466766654
No 55
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.28 E-value=27 Score=31.21 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=40.9
Q ss_pred eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCC---CCCCCceEEEEeCCEEEEEeCcCC
Q 027962 43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFS---LPRVGHSATLILGGRVLIYGGEDS 119 (216)
Q Consensus 43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p---~~r~~~~~~~~~~~~l~v~GG~~~ 119 (216)
+-++. ++.+|+.... +.++.+|.++++..|+.-... .....+ ........++ .++++|+ +..
T Consensus 64 tPvv~-~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~---~~~~~~~~~~~~~~rg~av-~~~~v~v-~t~-- 128 (527)
T TIGR03075 64 QPLVV-DGVMYVTTSY-------SRVYALDAKTGKELWKYDPKL---PDDVIPVMCCDVVNRGVAL-YDGKVFF-GTL-- 128 (527)
T ss_pred CCEEE-CCEEEEECCC-------CcEEEEECCCCceeeEecCCC---CcccccccccccccccceE-ECCEEEE-EcC--
Confidence 34455 5788885432 258999999888889865200 000001 1111122334 6777776 222
Q ss_pred CCCCCCceEEEecCCC
Q 027962 120 ARRRKDDFWVLDTKAI 135 (216)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (216)
...+.++|.++-
T Consensus 129 ----dg~l~ALDa~TG 140 (527)
T TIGR03075 129 ----DARLVALDAKTG 140 (527)
T ss_pred ----CCEEEEEECCCC
Confidence 246899998876
No 56
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.92 E-value=11 Score=26.46 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=44.6
Q ss_pred cccEEEEeccCCccccceEEcccC-CCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEe-cCCCCccEEEec
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTH-PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD-VYEGFFKWVQIP 84 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~-~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d-~~~~~~~W~~~~ 84 (216)
.+.+-.||+++. +|+.+..+ ..........++.+ ++++.++.-........-++|.++ ..+ .+|++..
T Consensus 19 ~~~IvsFDv~~E----~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~~k--~~Wsk~~ 88 (129)
T PF08268_consen 19 NNVIVSFDVRSE----KFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDYEK--QEWSKKH 88 (129)
T ss_pred CcEEEEEEcCCc----eEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecccc--ceEEEEE
Confidence 467888999997 99888531 23344566677888 578777654422222345788885 556 8899774
No 57
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=82.28 E-value=15 Score=28.02 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeE-EEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRT-VLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
..++|++|..++ .|.++...+-+...+.=-+..+++.+| +++|-.-..-.--..+|.|++.+ ..-+.+
T Consensus 87 iGkIYIkn~~~~----~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t--g~~~~l 155 (200)
T PF15525_consen 87 IGKIYIKNLNNN----NWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT--GNLTEL 155 (200)
T ss_pred ceeEEEEecCCC----ceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccC--CceeEe
Confidence 679999999997 776654222221112224566755564 44553211223345699999999 777777
No 58
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.42 E-value=16 Score=25.66 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred EEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCC
Q 027962 46 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKD 125 (216)
Q Consensus 46 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 125 (216)
.+ |+-+|...-. .....+.+..||+.+ .+|+.+. .+............+. .+|+|-++.-........-
T Consensus 3 ci-nGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~-----~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~~ 71 (129)
T PF08268_consen 3 CI-NGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIK-----LPEDPYSSDCSSTLIE-YKGKLALVSYNDQGEPDSI 71 (129)
T ss_pred EE-CcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEE-----eeeeeccccCccEEEE-eCCeEEEEEecCCCCcceE
Confidence 45 4555555444 223356789999999 9999985 1111223333334444 8888777654332212345
Q ss_pred ceEEEe
Q 027962 126 DFWVLD 131 (216)
Q Consensus 126 ~~~~~~ 131 (216)
++|+++
T Consensus 72 ~iWvLe 77 (129)
T PF08268_consen 72 DIWVLE 77 (129)
T ss_pred EEEEee
Confidence 788874
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=80.43 E-value=33 Score=28.74 Aligned_cols=129 Identities=11% Similarity=0.108 Sum_probs=66.9
Q ss_pred cEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCce----eCcEEEE--ec------CCCCcc
Q 027962 12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV----LNDVWFL--DV------YEGFFK 79 (216)
Q Consensus 12 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~--d~------~~~~~~ 79 (216)
.+.+||+++. .-... ..++.+...-.++.++ ++||+.-........ ....+.+ +. ....-.
T Consensus 87 ~t~vyDt~t~----av~~~--P~l~~pk~~pisv~VG-~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~ 159 (342)
T PF07893_consen 87 RTLVYDTDTR----AVATG--PRLHSPKRCPISVSVG-DKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWS 159 (342)
T ss_pred CeEEEECCCC----eEecc--CCCCCCCcceEEEEeC-CeEEEeeccCccccccCccceeEEEeccccccccccCCCcce
Confidence 4778999885 33332 2244445555777785 579999776321110 0133343 21 121134
Q ss_pred EEEeccCcCCCCCCCCCCCCC------ceE-EEEeCCEEEE-EeCcCCCCCCCCceEEEecCCCCcccccc-----cccc
Q 027962 80 WVQIPYELQNIPAGFSLPRVG------HSA-TLILGGRVLI-YGGEDSARRRKDDFWVLDTKAIPFTSVQQ-----SMLD 146 (216)
Q Consensus 80 W~~~~~~~~~~~~~~p~~r~~------~~~-~~~~~~~l~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 146 (216)
|+.+ +.+|..+.. -++ ++..+..|+| .-|.. ...+.||+.+.+|...-. .+-=
T Consensus 160 W~~L--------P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW~LPF~G~a 225 (342)
T PF07893_consen 160 WRSL--------PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDWMLPFHGQA 225 (342)
T ss_pred EEcC--------CCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccceecCcCCcc
Confidence 6666 334444332 122 2213666777 33321 347999999887774431 2344
Q ss_pred ccCcccCCceEeecC
Q 027962 147 SRGLLLNMWKRLRAE 161 (216)
Q Consensus 147 ~~~~~~~~W~~~~~~ 161 (216)
.|++.-+.|--+...
T Consensus 226 ~y~~el~~W~Gls~~ 240 (342)
T PF07893_consen 226 EYVPELDLWFGLSSD 240 (342)
T ss_pred EECCCcCeEEEeccC
Confidence 556666666655443
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=75.80 E-value=48 Score=28.08 Aligned_cols=32 Identities=19% Similarity=-0.029 Sum_probs=22.9
Q ss_pred EEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 44 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 44 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
.++. ++.+|+.... ..++.||.++++..|+.-
T Consensus 65 Pvv~-~~~vy~~~~~-------g~l~ald~~tG~~~W~~~ 96 (394)
T PRK11138 65 PAVA-YNKVYAADRA-------GLVKALDADTGKEIWSVD 96 (394)
T ss_pred cEEE-CCEEEEECCC-------CeEEEEECCCCcEeeEEc
Confidence 3445 6788887643 258899998877889864
No 61
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.00 E-value=66 Score=28.79 Aligned_cols=106 Identities=10% Similarity=0.095 Sum_probs=55.0
Q ss_pred ccEEEEeccCCccccceEEcccCCC-CCC-----CcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPS-PPA-----RSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~-p~~-----r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
+.++.+|.++- +..|+.-...+. ..+ ......++. ++++|+.. . ...++.+|.++++..|+.-.
T Consensus 79 g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t-~------dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 79 SRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGT-L------DARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE-CCEEEEEc-C------CCEEEEEECCCCCEEeeccc
Confidence 46889998863 357875421110 000 111223334 45666532 2 13589999999888897652
Q ss_pred cCcCCCCCCCCCC-CCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 85 YELQNIPAGFSLP-RVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 85 ~~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
.+.... ....+.++ .++.||+-... ........+.+||+++-
T Consensus 149 -------~~~~~~~~~tssP~v-~~g~Vivg~~~-~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 149 -------GDYKAGYTITAAPLV-VKGKVITGISG-GEFGVRGYVTAYDAKTG 191 (527)
T ss_pred -------ccccccccccCCcEE-ECCEEEEeecc-cccCCCcEEEEEECCCC
Confidence 222211 11122334 67776663221 11234567888988864
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.87 E-value=40 Score=25.80 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=52.1
Q ss_pred ccEEEEeccCCccccceEE-cccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962 11 GDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 89 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~ 89 (216)
+.++.+|.++. +..|+. ... .++.+........+.++.+|+... ...++.+|++++...|..-.
T Consensus 86 ~~l~~~d~~tG--~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~----- 150 (238)
T PF13360_consen 86 GSLYALDAKTG--KVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV----- 150 (238)
T ss_dssp SEEEEEETTTS--CEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES-----
T ss_pred eeeEecccCCc--ceeeeecccc-ccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec-----
Confidence 36889997753 358884 422 222222223333332445555442 24589999998778887762
Q ss_pred CCCCCCCCC-----C-CceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 90 IPAGFSLPR-----V-GHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 90 ~~~~~p~~r-----~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
...+..- . ..+..++.++.+|+..+.. .+..+|+.+.
T Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg 193 (238)
T PF13360_consen 151 --GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATG 193 (238)
T ss_dssp --STT-SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTT
T ss_pred --CCCCCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCC
Confidence 1111100 0 0122232567777765543 1566688854
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=69.42 E-value=66 Score=28.13 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=51.3
Q ss_pred cccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962 10 LGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ 88 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 88 (216)
-.-+|.||+.+. +-.++. ....+.+-...-.+.. ++.++++-|.. .-|+++...| ..|..-
T Consensus 279 rky~ysyDle~a----k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~------G~I~lLhakT--~eli~s----- 340 (514)
T KOG2055|consen 279 RKYLYSYDLETA----KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNN------GHIHLLHAKT--KELITS----- 340 (514)
T ss_pred ceEEEEeecccc----ccccccCCCCcccchhheeEecC-CCCeEEEcccC------ceEEeehhhh--hhhhhe-----
Confidence 346788999885 666664 1122212222223334 34566666663 2356666666 656321
Q ss_pred CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecC
Q 027962 89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 133 (216)
Q Consensus 89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 133 (216)
-.++......+... .+..|++.||.. .+|++|+.
T Consensus 341 ---~KieG~v~~~~fsS-dsk~l~~~~~~G-------eV~v~nl~ 374 (514)
T KOG2055|consen 341 ---FKIEGVVSDFTFSS-DSKELLASGGTG-------EVYVWNLR 374 (514)
T ss_pred ---eeeccEEeeEEEec-CCcEEEEEcCCc-------eEEEEecC
Confidence 12333333333333 556788887753 67999998
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=68.80 E-value=69 Score=26.86 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcC
Q 027962 49 GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGED 118 (216)
Q Consensus 49 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 118 (216)
+++|+..+.. ....+||.++ ..-... +.++.+...-.+.. .+++||++....
T Consensus 76 gskIv~~d~~-------~~t~vyDt~t--~av~~~--------P~l~~pk~~pisv~-VG~~LY~m~~~~ 127 (342)
T PF07893_consen 76 GSKIVAVDQS-------GRTLVYDTDT--RAVATG--------PRLHSPKRCPISVS-VGDKLYAMDRSP 127 (342)
T ss_pred CCeEEEEcCC-------CCeEEEECCC--CeEecc--------CCCCCCCcceEEEE-eCCeEEEeeccC
Confidence 5788888544 2378999998 544444 33444333333444 678899998764
No 65
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.86 E-value=1.4e+02 Score=28.24 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCCCcccccEEEEeccCCcc-ccceEEcccCCCCCCC------cCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCC
Q 027962 4 GLYGLRLGDTWVLELSENFC-FGSWQQLVTHPSPPAR------SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEG 76 (216)
Q Consensus 4 g~~~~~~~~~~~~d~~~~~~-~~~W~~~~~~~~p~~r------~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 76 (216)
+..+.|.+.+-.++.++-.. +..|+.- ++..+.++ ...+-+++ ++.+|+.-.. +.++.+|..++
T Consensus 144 ~~~~~RySpL~qIn~~NV~~L~~aWt~~-tGd~~~~~~~~~~~~e~TPlvv-gg~lYv~t~~-------~~V~ALDa~TG 214 (764)
T TIGR03074 144 TQAGQRYSPLDQINPDNVGNLKVAWTYH-TGDLKTPDDPGEATFQATPLKV-GDTLYLCTPH-------NKVIALDAATG 214 (764)
T ss_pred CCcccccCcccccCcccccCceEEEEEE-CCCccccccccccccccCCEEE-CCEEEEECCC-------CeEEEEECCCC
Confidence 33444544434443332111 3477753 33333322 22345556 5788887432 45889999888
Q ss_pred CccEEEe
Q 027962 77 FFKWVQI 83 (216)
Q Consensus 77 ~~~W~~~ 83 (216)
+..|+.-
T Consensus 215 k~lW~~d 221 (764)
T TIGR03074 215 KEKWKFD 221 (764)
T ss_pred cEEEEEc
Confidence 8889865
No 66
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=60.53 E-value=1.2e+02 Score=26.73 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=37.3
Q ss_pred ccEEEEeccCCccccceEEcccCCC-CCCCcCceEEEEcCCeEEEEccCCCCC---ceeCcEEEEecCCCCccEEEe
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPS-PPARSGHSLTRIGGNRTVLFGGRGVGY---EVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~-p~~r~~h~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~~~~~W~~~ 83 (216)
..++.+|.++- +..|+.-..... +.-....+.++. ++.+| +|..+... .....++.+|..+++..|+.-
T Consensus 120 g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 120 GRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 57888998863 357876421110 000122333444 44444 55332111 224578999999988899764
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=60.04 E-value=75 Score=24.24 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=55.0
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEE-EeccCcC
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWV-QIPYELQ 88 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~ 88 (216)
...++++|.++. +..|+.- ++ .+.....+.. ++.+|+.... +.++.+|..+++..|+ ...
T Consensus 45 ~~~l~~~d~~tG--~~~W~~~----~~-~~~~~~~~~~-~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~---- 105 (238)
T PF13360_consen 45 DGNLYALDAKTG--KVLWRFD----LP-GPISGAPVVD-GGRVYVGTSD-------GSLYALDAKTGKVLWSIYLT---- 105 (238)
T ss_dssp TSEEEEEETTTS--EEEEEEE----CS-SCGGSGEEEE-TTEEEEEETT-------SEEEEEETTTSCEEEEEEE-----
T ss_pred CCEEEEEECCCC--CEEEEee----cc-ccccceeeec-ccccccccce-------eeeEecccCCcceeeeeccc----
Confidence 357888998763 2477764 21 2222223444 5778777522 2689999888889999 452
Q ss_pred CCCCCCCC-CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 89 NIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 89 ~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
...+. .+......+ .++.+++... ...+.++|+++-
T Consensus 106 ---~~~~~~~~~~~~~~~-~~~~~~~~~~-------~g~l~~~d~~tG 142 (238)
T PF13360_consen 106 ---SSPPAGVRSSSSPAV-DGDRLYVGTS-------SGKLVALDPKTG 142 (238)
T ss_dssp ---SSCTCSTB--SEEEE-ETTEEEEEET-------CSEEEEEETTTT
T ss_pred ---cccccccccccCceE-ecCEEEEEec-------cCcEEEEecCCC
Confidence 11112 223333334 6676666443 356788888865
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=55.10 E-value=1.3e+02 Score=25.45 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred ccEEEEeccCCccccceEEcccCC-CC-----CCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHP-SP-----PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~-~p-----~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
..+++||.++. +..|+.-.... .. .++.....+.. ++++|+.+ . ...++.+|.++++..|+.-.
T Consensus 79 g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~-~------~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 79 GLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS-E------KGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc-C------CCEEEEEECCCCCCcccccC
Confidence 46888998753 35787542110 00 11222223344 56777643 2 13589999988888897652
Q ss_pred cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
.+ . ...+.++ .++.+|+..+ ...++++|+++-
T Consensus 149 ------~~----~-~~ssP~v-~~~~v~v~~~-------~g~l~ald~~tG 180 (394)
T PRK11138 149 ------AG----E-ALSRPVV-SDGLVLVHTS-------NGMLQALNESDG 180 (394)
T ss_pred ------CC----c-eecCCEE-ECCEEEEECC-------CCEEEEEEccCC
Confidence 11 1 1122234 6777777432 235889998865
No 69
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=54.72 E-value=22 Score=18.06 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=13.2
Q ss_pred cCceEEEEcCCeEEEEcc
Q 027962 40 SGHSLTRIGGNRTVLFGG 57 (216)
Q Consensus 40 ~~h~~~~~~~~~iyv~GG 57 (216)
..|+++...++++|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 467888877889999984
No 70
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=53.34 E-value=1.2e+02 Score=24.65 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred EEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceE--EEEeCCEEEEEeCcCC--
Q 027962 44 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSA--TLILGGRVLIYGGEDS-- 119 (216)
Q Consensus 44 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~--~~~~~~~l~v~GG~~~-- 119 (216)
+-.+ ++.+|+.--.+.....-+.+.+-+..- ..|+.+. .|.. .+|+- ....++.||+||-.-.
T Consensus 196 vkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G--~~w~slr---------fp~n-vHhtnlPFakvgD~l~mFgsERA~~ 262 (367)
T PF12217_consen 196 VKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNG--QNWSSLR---------FPNN-VHHTNLPFAKVGDVLYMFGSERAEN 262 (367)
T ss_dssp EEEE-TTEEEEEEEES-TTS---EEEEESSTT--SS-EEEE----------TT----SS---EEEETTEEEEEEE-SSTT
T ss_pred hhhh-CCEEEEEEcCcCCCCCcceeeeecccC--Cchhhcc---------cccc-ccccCCCceeeCCEEEEEecccccc
Confidence 3345 578888743322334455677776655 6799884 3322 22322 2228899999985321
Q ss_pred ---CCCC-------CCceEEEecCCCCccccccccccccCcccCCceEeecC---CCCCCCCcceeEEEecCCC-EEEEE
Q 027962 120 ---ARRR-------KDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE---GYKPNCRSFHRACPDYSGR-YLYVF 185 (216)
Q Consensus 120 ---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~~r~~h~~~~~~~~~-~l~i~ 185 (216)
.+.. ....+...+.-. ..++...+|..+... |.....-.+-+.+++ .++ .-|||
T Consensus 263 EWE~G~~D~RY~~~yPRtF~~k~nv~-----------~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~-KD~~lyy~F 330 (367)
T PF12217_consen 263 EWEGGEPDNRYRANYPRTFMLKVNVS-----------DWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVV-KDGWLYYIF 330 (367)
T ss_dssp -SSTT-----SS-B--EEEEEEEETT-----------T---TT---EEEEE-BB--SSS---SEEEEEEE-ETTEEEEEE
T ss_pred ccccCCCcccccccCCceEEEEeecc-----------cCCccceEEEEeecceeccccccccccceeEEE-ECCEEEEEe
Confidence 1110 112222222211 223335677766542 444444455555555 345 45689
Q ss_pred cccc
Q 027962 186 GGMV 189 (216)
Q Consensus 186 GG~~ 189 (216)
||+.
T Consensus 331 GgED 334 (367)
T PF12217_consen 331 GGED 334 (367)
T ss_dssp EEB-
T ss_pred cCcc
Confidence 9884
No 71
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.83 E-value=1.4e+02 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=31.1
Q ss_pred cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCC
Q 027962 10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 75 (216)
Q Consensus 10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 75 (216)
-+.+-++|+.++ ..++.... ++.-.+++.--++.-++++|... ..++.||+..
T Consensus 215 ~nkiki~dlet~------~~vssy~a--~~~~wSC~wDlde~h~IYaGl~n-----G~VlvyD~R~ 267 (463)
T KOG1645|consen 215 GNKIKIMDLETS------CVVSSYIA--YNQIWSCCWDLDERHVIYAGLQN-----GMVLVYDMRQ 267 (463)
T ss_pred CceEEEEecccc------eeeeheec--cCCceeeeeccCCcceeEEeccC-----ceEEEEEccC
Confidence 467778888875 11211122 23334444433567888998842 3488999864
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=39.79 E-value=2.7e+02 Score=24.60 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCe-EEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcC
Q 027962 49 GNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGED 118 (216)
Q Consensus 49 ~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 118 (216)
+++ .++++|+. . =+|.||+.+ .+-+++. ....++..-...-.+. ..+.++++-|..
T Consensus 268 ~G~~~i~~s~rr-k-----y~ysyDle~--ak~~k~~-----~~~g~e~~~~e~FeVS-hd~~fia~~G~~ 324 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-K-----YLYSYDLET--AKVTKLK-----PPYGVEEKSMERFEVS-HDSNFIAIAGNN 324 (514)
T ss_pred CCceEEEecccc-e-----EEEEeeccc--ccccccc-----CCCCcccchhheeEec-CCCCeEEEcccC
Confidence 444 66677662 2 268899998 7777774 1111221111111222 666778887864
No 73
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=39.60 E-value=1.3e+02 Score=24.83 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=36.2
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEc-CCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
..+.+||+++. +|...+ +|.....--...++ .+.+++. .-..+.+.+||+.+ .+.+.+
T Consensus 254 g~l~rfdPs~~----sW~eyp---LPgs~arpys~rVD~~grVW~s------ea~agai~rfdpet--a~ftv~ 312 (353)
T COG4257 254 GSLHRFDPSVT----SWIEYP---LPGSKARPYSMRVDRHGRVWLS------EADAGAIGRFDPET--ARFTVL 312 (353)
T ss_pred ceeeEeCcccc----cceeee---CCCCCCCcceeeeccCCcEEee------ccccCceeecCccc--ceEEEe
Confidence 47889999997 898874 33333333344442 2223332 12357799999999 777766
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.51 E-value=2.3e+02 Score=23.59 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=48.8
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCC
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 90 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 90 (216)
..+++||+++. +..|+.-. + ...+.+.. ++.+|+.... ..++.+|..+++..|+.-.
T Consensus 251 g~l~a~d~~tG--~~~W~~~~----~---~~~~p~~~-~~~vyv~~~~-------G~l~~~d~~tG~~~W~~~~------ 307 (377)
T TIGR03300 251 GRVAALDLRSG--RVLWKRDA----S---SYQGPAVD-DNRLYVTDAD-------GVVVALDRRSGSELWKNDE------ 307 (377)
T ss_pred CEEEEEECCCC--cEEEeecc----C---CccCceEe-CCEEEEECCC-------CeEEEEECCCCcEEEcccc------
Confidence 36788898763 24676531 1 11223334 5788876422 3588999888667786531
Q ss_pred CCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 91 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
.. .+...+.++ .++.||+. .. ...++++|..+.
T Consensus 308 ---~~-~~~~ssp~i-~g~~l~~~-~~------~G~l~~~d~~tG 340 (377)
T TIGR03300 308 ---LK-YRQLTAPAV-VGGYLVVG-DF------EGYLHWLSREDG 340 (377)
T ss_pred ---cc-CCccccCEE-ECCEEEEE-eC------CCEEEEEECCCC
Confidence 11 111122233 66666663 22 235788887654
No 75
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=37.66 E-value=2.2e+02 Score=23.13 Aligned_cols=60 Identities=12% Similarity=-0.028 Sum_probs=29.0
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCe-EEEEccCCCCCceeCcEEEEecC-CCCccEEEe
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVY-EGFFKWVQI 83 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~-~~~~~W~~~ 83 (216)
+.+.+||+.++ ++++.+.. .+.....+.++.-.+++ +|+. +.. .+.+..|++. + .+++.+
T Consensus 12 ~~I~~~~~~~~---g~l~~~~~--~~~~~~~~~l~~spd~~~lyv~-~~~-----~~~i~~~~~~~~--g~l~~~ 73 (330)
T PRK11028 12 QQIHVWNLNHE---GALTLLQV--VDVPGQVQPMVISPDKRHLYVG-VRP-----EFRVLSYRIADD--GALTFA 73 (330)
T ss_pred CCEEEEEECCC---CceeeeeE--EecCCCCccEEECCCCCEEEEE-ECC-----CCcEEEEEECCC--CceEEe
Confidence 57888888654 46665542 11111122232222344 5554 331 1456666664 4 556655
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.40 E-value=2.3e+02 Score=22.28 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=39.2
Q ss_pred cceEEcccCCCCCCCcC-ceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceE
Q 027962 25 GSWQQLVTHPSPPARSG-HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSA 103 (216)
Q Consensus 25 ~~W~~~~~~~~p~~r~~-h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~ 103 (216)
.+|....... ...... .+.+...++.++++-... ... .++......+-.+|+... ....|........
T Consensus 145 ~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~------~~~~~~~~~~~~~ 213 (275)
T PF13088_consen 145 KTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQ------PTNLPNPNSSISL 213 (275)
T ss_dssp SSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEE------EEECSSCCEEEEE
T ss_pred ceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCce------ecccCcccCCceE
Confidence 4798764211 222333 334445667888886442 111 444443333335798762 1234444433333
Q ss_pred EEEeCCEEEEEeC
Q 027962 104 TLILGGRVLIYGG 116 (216)
Q Consensus 104 ~~~~~~~l~v~GG 116 (216)
....+++++++..
T Consensus 214 ~~~~~g~~~~~~~ 226 (275)
T PF13088_consen 214 VRLSDGRLLLVYN 226 (275)
T ss_dssp EECTTSEEEEEEE
T ss_pred EEcCCCCEEEEEE
Confidence 3335678888777
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=32.75 E-value=2.3e+02 Score=21.90 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=49.4
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEE-cCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI-GGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 89 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~ 89 (216)
+.++++|+++. .-+.+. .+. -..++.. .++.+|+....+ +.++|+.+ .+++.+...
T Consensus 22 ~~i~~~~~~~~----~~~~~~---~~~---~~G~~~~~~~g~l~v~~~~~--------~~~~d~~~--g~~~~~~~~--- 78 (246)
T PF08450_consen 22 GRIYRVDPDTG----EVEVID---LPG---PNGMAFDRPDGRLYVADSGG--------IAVVDPDT--GKVTVLADL--- 78 (246)
T ss_dssp TEEEEEETTTT----EEEEEE---SSS---EEEEEEECTTSEEEEEETTC--------EEEEETTT--TEEEEEEEE---
T ss_pred CEEEEEECCCC----eEEEEe---cCC---CceEEEEccCCEEEEEEcCc--------eEEEecCC--CcEEEEeec---
Confidence 46777888774 333222 111 2233333 456787775432 35568888 888877300
Q ss_pred CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCC--CceEEEecC
Q 027962 90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRK--DDFWVLDTK 133 (216)
Q Consensus 90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~~ 133 (216)
.....+..+.+-.+ +..++.||+.--........ ..+++++..
T Consensus 79 ~~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 79 PDGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp ETTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred cCCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC
Confidence 00111333443333 33788888853211111112 568888866
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=31.74 E-value=3.6e+02 Score=23.75 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=53.2
Q ss_pred ccEEEEeccCCccccceEEcccCC--CCCCC-cCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHP--SPPAR-SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 87 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~--~p~~r-~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 87 (216)
..++.+|.++- +..|+.-.... ...+. ....++..+++.+|+-. . ...++.+|.++++..|+.-.
T Consensus 71 g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~------~g~v~AlD~~TG~~~W~~~~--- 138 (488)
T cd00216 71 SALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-F------DGRLVALDAETGKQVWKFGN--- 138 (488)
T ss_pred CcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEec-C------CCeEEEEECCCCCEeeeecC---
Confidence 56788998763 35787642111 00000 11112233215666532 2 13689999998888898652
Q ss_pred CCCCCCC-CCCCCCceEEEEeCCEEEEEeCcCCCC---CCCCceEEEecCCC
Q 027962 88 QNIPAGF-SLPRVGHSATLILGGRVLIYGGEDSAR---RRKDDFWVLDTKAI 135 (216)
Q Consensus 88 ~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~~~~~~~~~~~ 135 (216)
.... +......+.++ .++.+|+ |..+... .....++++|.++-
T Consensus 139 ---~~~~~~~~~i~ssP~v-~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 139 ---NDQVPPGYTMTGAPTI-VKKLVII-GSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred ---CCCcCcceEecCCCEE-ECCEEEE-eccccccccCCCCcEEEEEECCCC
Confidence 1110 00011222334 5665554 4322111 23467899998865
No 79
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.48 E-value=83 Score=24.86 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred cceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 25 GSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 25 ~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
.+|+.+.....|.+.....++...++.++++.... .....-.++.-.-.- .+|++.
T Consensus 194 ~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~r~~l~l~~S~D~g--~tW~~~ 249 (275)
T PF13088_consen 194 RTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNP-DGRSNLSLYVSEDGG--KTWSRP 249 (275)
T ss_dssp SS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECS-STSEEEEEEEECTTC--EEEEEE
T ss_pred CcCCCceecccCcccCCceEEEcCCCCEEEEEECC-CCCCceEEEEEeCCC--CcCCcc
Confidence 58987653356666666677777667888777632 222222222222224 789865
No 80
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=30.33 E-value=3.4e+02 Score=23.01 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=40.5
Q ss_pred CeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcC---CCCCCCCc
Q 027962 50 NRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGED---SARRRKDD 126 (216)
Q Consensus 50 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---~~~~~~~~ 126 (216)
..+||.-..... ..+.+..+|..+ . +.+ +..+.+...+....-.+..||+.-.+- ..+...+.
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~--~--~v~--------g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEA--G--RVL--------GMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCC--C--EEE--------EEEEccCCCceeECCCCCEEEEEeccccccccCCCCCE
Confidence 346665433111 127899999887 4 333 334444444444221445688876632 22344577
Q ss_pred eEEEecCCC
Q 027962 127 FWVLDTKAI 135 (216)
Q Consensus 127 ~~~~~~~~~ 135 (216)
+.++|+.+.
T Consensus 79 V~v~D~~t~ 87 (352)
T TIGR02658 79 VEVIDPQTH 87 (352)
T ss_pred EEEEECccC
Confidence 899998854
No 81
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.98 E-value=2.7e+02 Score=21.43 Aligned_cols=18 Identities=6% Similarity=0.298 Sum_probs=13.2
Q ss_pred CcCCCCCCCCceEEEecC
Q 027962 116 GEDSARRRKDDFWVLDTK 133 (216)
Q Consensus 116 G~~~~~~~~~~~~~~~~~ 133 (216)
|-+....-..++|++|+.
T Consensus 79 g~~a~eEgiGkIYIkn~~ 96 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLN 96 (200)
T ss_pred CCccccccceeEEEEecC
Confidence 444445567899999988
No 82
>PRK00178 tolB translocation protein TolB; Provisional
Probab=27.54 E-value=3.9e+02 Score=22.79 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=13.4
Q ss_pred CcEEEEecCCCCccEEEe
Q 027962 66 NDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 66 ~~~~~~d~~~~~~~W~~~ 83 (216)
.++|++|+.+ .+.+++
T Consensus 267 ~~Iy~~d~~~--~~~~~l 282 (430)
T PRK00178 267 PEIYVMDLAS--RQLSRV 282 (430)
T ss_pred ceEEEEECCC--CCeEEc
Confidence 5799999998 777777
No 83
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.02 E-value=3.7e+02 Score=22.43 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=50.9
Q ss_pred cEEEEeccCCcccc-ceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCC
Q 027962 12 DTWVLELSENFCFG-SWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 90 (216)
Q Consensus 12 ~~~~~d~~~~~~~~-~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 90 (216)
.++.+|+.+. . .|+..... ....-.+-+.+.+++||+-...+ .+++||..+++..|+.-.
T Consensus 79 ~i~A~d~~~g---~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~------ 139 (370)
T COG1520 79 NIFALNPDTG---LVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNV------ 139 (370)
T ss_pred cEEEEeCCCC---cEEecccCcC---cceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEec------
Confidence 7888999985 2 48764321 00111111222245655443222 789999987779998773
Q ss_pred CCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962 91 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 135 (216)
Q Consensus 91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~ 135 (216)
.. . ++....++. .++.+|+-- ..+.+++++..+-
T Consensus 140 -~~-~-~~~~~~~v~-~~~~v~~~s-------~~g~~~al~~~tG 173 (370)
T COG1520 140 -GG-S-PYYASPPVV-GDGTVYVGT-------DDGHLYALNADTG 173 (370)
T ss_pred -CC-C-eEEecCcEE-cCcEEEEec-------CCCeEEEEEccCC
Confidence 22 1 333333333 555555532 2456778877765
No 84
>PRK04792 tolB translocation protein TolB; Provisional
Probab=26.71 E-value=4.3e+02 Score=22.98 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=31.2
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCe-EEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 84 (216)
..+|++|+.+. +-+++.. . +..........+++ |++....+ . ..++|++|+.+ .+.+++.
T Consensus 242 ~~L~~~dl~tg----~~~~lt~--~--~g~~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~t--g~~~~lt 302 (448)
T PRK04792 242 AEIFVQDIYTQ----VREKVTS--F--PGINGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIAT--KALTRIT 302 (448)
T ss_pred cEEEEEECCCC----CeEEecC--C--CCCcCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCC--CCeEECc
Confidence 35778887763 4444421 1 11111222222344 55443221 1 25799999988 7777773
No 85
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=26.33 E-value=2e+02 Score=23.55 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCeEEEEccCCCCCc-eeCcEEEEecC-CCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCc
Q 027962 49 GNRTVLFGGRGVGYE-VLNDVWFLDVY-EGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 117 (216)
Q Consensus 49 ~~~iyv~GG~~~~~~-~~~~~~~~d~~-~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 117 (216)
+++.+++|-...... ..+.+.+|.-. . .+|+.++ ..+....-..-.+- .+++ ++|||.
T Consensus 36 ~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~--~~w~~v~-------~~~~~~LqDPF~t~-I~ge-lifGGv 95 (298)
T PF08950_consen 36 NGKTVIAGRVEKRDSWEHSEVRFFEETGK--DEWTPVE-------GAPVFQLQDPFVTR-IQGE-LIFGGV 95 (298)
T ss_dssp TTEEEEEEEEE-TT-SS--EEEEEEEEET--TEEEE-T-------T---BS-EEEEEEE-ETTE-EEEEEE
T ss_pred CCEEEEEeeeecCCchhccEEEEEEEeCC--CeEEECC-------CcceEEecCcceee-ECCE-EEEeeE
Confidence 678999988754444 46778888654 6 8999994 32322222222233 5565 455775
No 86
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.33 E-value=3.8e+02 Score=21.98 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=41.4
Q ss_pred ceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC
Q 027962 42 HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121 (216)
Q Consensus 42 h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 121 (216)
.-.+++++.+-+++=|... ..+-..|++++...|+.+. ..|....+.+ .++.++ .|=+
T Consensus 14 spLVV~~dskT~v~igSHs-----~~~~avd~~sG~~~We~il-----------g~RiE~sa~v-vgdfVV-~GCy---- 71 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHS-----GIVIAVDPQSGNLIWEAIL-----------GVRIECSAIV-VGDFVV-LGCY---- 71 (354)
T ss_pred CcEEEecCCceEEEEecCC-----ceEEEecCCCCcEEeehhh-----------CceeeeeeEE-ECCEEE-EEEc----
Confidence 3356665556555544421 2355678888778898873 3566666666 777644 3433
Q ss_pred CCCCceEEEecCCC
Q 027962 122 RRKDDFWVLDTKAI 135 (216)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (216)
...++.++.++.
T Consensus 72 --~g~lYfl~~~tG 83 (354)
T KOG4649|consen 72 --SGGLYFLCVKTG 83 (354)
T ss_pred --cCcEEEEEecch
Confidence 345677776654
No 87
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=22.87 E-value=6e+02 Score=23.33 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCCCCcCceEEEEcCCe-EEEEccCCCCCceeCcEEEEecCCCCccEEE-eccCcCCCCCCCCCCCCCceEEEEeCCEEE
Q 027962 35 SPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQNIPAGFSLPRVGHSATLILGGRVL 112 (216)
Q Consensus 35 ~p~~r~~h~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~ 112 (216)
...|+.+..+++..-+. +|+.| .+ +++|+|+++. ..|-. .. . ..+-..++... ....|+
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~g-sg------~evYRlNLEq--GrfL~P~~-------~--~~~~lN~v~in-~~hgLl 190 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVG-SG------SEVYRLNLEQ--GRFLNPFE-------T--DSGELNVVSIN-EEHGLL 190 (703)
T ss_pred eecCcCCccccccCCCccEEEee-cC------cceEEEEccc--cccccccc-------c--ccccceeeeec-CccceE
Confidence 45566666666654333 55443 32 4689999988 76632 21 1 11112222222 556789
Q ss_pred EEeCcC
Q 027962 113 IYGGED 118 (216)
Q Consensus 113 v~GG~~ 118 (216)
.+||.+
T Consensus 191 a~Gt~~ 196 (703)
T KOG2321|consen 191 ACGTED 196 (703)
T ss_pred EecccC
Confidence 998864
No 88
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=20.91 E-value=4.9e+02 Score=21.61 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=32.6
Q ss_pred ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962 11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 83 (216)
Q Consensus 11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 83 (216)
..++++|+++. +..|+.....+....+...+.+.. ++.+ ++|... ..++.+|+.+++..|+.-
T Consensus 155 g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~~-~~~v-~~~~~~------g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 155 GRLTALDAATG--ERLWTYSRVTPALTLRGSASPVIA-DGGV-LVGFAG------GKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEEE-CCEE-EEECCC------CEEEEEEccCCCEeeeec
Confidence 35788888753 246775421111111222333444 3444 444331 247889988866778643
Done!