Query 027964
Match_columns 216
No_of_seqs 196 out of 1746
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 6.9E-31 2.4E-35 206.9 10.3 129 6-136 12-143 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 1.8E-24 6E-29 207.2 14.2 128 3-134 141-280 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 7.2E-24 2.5E-28 207.3 14.7 128 3-134 452-592 (1330)
4 4dov_A ORC1, origin recognitio 99.9 5.6E-22 1.9E-26 151.2 16.1 124 8-134 21-159 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.8 1.1E-19 3.6E-24 174.4 14.0 128 5-134 319-500 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.8 5E-20 1.7E-24 174.4 10.9 125 6-133 43-178 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.7 6.3E-18 2.2E-22 165.6 10.7 126 6-133 632-810 (1330)
8 1wep_A PHF8; structural genomi 99.7 1.9E-18 6.6E-23 118.5 4.0 65 129-193 3-67 (79)
9 2fl7_A Regulatory protein SIR3 99.6 1.4E-15 4.7E-20 122.5 10.2 125 9-134 39-189 (232)
10 1m4z_A Origin recognition comp 99.6 1.3E-15 4.5E-20 123.1 9.9 125 9-134 39-189 (238)
11 1we9_A PHD finger family prote 99.6 1.5E-16 5.1E-21 104.7 3.0 56 136-191 4-60 (64)
12 3kqi_A GRC5, PHD finger protei 99.6 3.5E-17 1.2E-21 111.0 -0.0 59 135-193 7-65 (75)
13 3o70_A PHD finger protein 13; 99.5 2.2E-15 7.4E-20 100.0 2.4 55 132-189 13-67 (68)
14 3o7a_A PHD finger protein 13 v 99.5 2.4E-15 8.1E-20 94.8 2.1 49 137-188 3-51 (52)
15 1wee_A PHD finger family prote 99.5 3.7E-15 1.3E-19 100.2 1.8 56 135-191 13-68 (72)
16 1wem_A Death associated transc 99.5 2.4E-15 8.1E-20 102.2 -0.2 57 135-192 13-73 (76)
17 2kgg_A Histone demethylase jar 99.5 8.3E-15 2.8E-19 92.2 2.3 47 140-187 5-52 (52)
18 1wew_A DNA-binding family prot 99.4 1.2E-14 4E-19 99.2 0.8 55 136-191 14-74 (78)
19 2vpb_A Hpygo1, pygopus homolog 99.4 1.1E-14 3.8E-19 95.7 -0.9 49 140-188 11-65 (65)
20 2rsd_A E3 SUMO-protein ligase 99.4 8.5E-14 2.9E-18 92.4 1.4 54 136-190 8-66 (68)
21 2jmi_A Protein YNG1, ING1 homo 99.4 8.2E-14 2.8E-18 97.0 1.1 50 135-189 23-76 (90)
22 3kv4_A PHD finger protein 8; e 99.4 5E-14 1.7E-18 124.7 -1.0 60 136-195 3-62 (447)
23 2xb1_A Pygopus homolog 2, B-ce 99.3 1.5E-13 5.2E-18 98.8 1.1 50 142-191 8-63 (105)
24 1wen_A Inhibitor of growth fam 99.3 3.6E-13 1.2E-17 90.0 2.4 51 136-191 14-67 (71)
25 3kv5_D JMJC domain-containing 99.3 2E-13 6.8E-18 122.4 1.1 61 133-193 32-92 (488)
26 2ri7_A Nucleosome-remodeling f 99.3 1.5E-13 5E-18 107.7 -0.7 57 136-192 6-62 (174)
27 3c6w_A P28ING5, inhibitor of g 99.3 1.9E-13 6.4E-18 88.1 -0.3 49 136-189 7-58 (59)
28 1weu_A Inhibitor of growth fam 99.3 8E-13 2.7E-17 92.2 1.6 51 136-191 34-87 (91)
29 2g6q_A Inhibitor of growth pro 99.3 3.5E-13 1.2E-17 87.6 -0.3 50 136-190 9-61 (62)
30 3lqh_A Histone-lysine N-methyl 99.3 8.1E-13 2.8E-17 103.9 1.7 55 138-192 2-66 (183)
31 1x4i_A Inhibitor of growth pro 99.2 3.4E-13 1.2E-17 89.8 -1.2 51 136-191 4-57 (70)
32 2vnf_A ING 4, P29ING4, inhibit 99.2 6.2E-13 2.1E-17 86.0 -0.4 49 136-189 8-59 (60)
33 2k16_A Transcription initiatio 99.2 9.6E-13 3.3E-17 89.0 0.2 54 136-191 16-70 (75)
34 2lv9_A Histone-lysine N-methyl 99.1 2.7E-11 9.2E-16 86.0 3.3 51 136-189 26-76 (98)
35 3pur_A Lysine-specific demethy 99.0 7.3E-11 2.5E-15 105.4 3.2 48 146-193 51-98 (528)
36 3rsn_A SET1/ASH2 histone methy 98.8 4.6E-09 1.6E-13 81.4 3.9 55 136-190 3-60 (177)
37 1xwh_A Autoimmune regulator; P 98.6 2.6E-08 8.9E-13 65.3 2.8 52 137-193 7-59 (66)
38 1f62_A Transcription factor WS 98.5 1.1E-08 3.8E-13 63.6 0.5 46 142-189 5-50 (51)
39 3ask_A E3 ubiquitin-protein li 98.5 4.9E-07 1.7E-11 72.8 9.7 47 142-189 179-225 (226)
40 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 1.9E-08 6.5E-13 74.8 0.7 40 152-191 1-46 (140)
41 2l5u_A Chromodomain-helicase-D 98.5 2.8E-08 9.7E-13 64.1 0.9 49 136-189 9-58 (61)
42 2yql_A PHD finger protein 21A; 98.4 4.3E-08 1.5E-12 62.1 1.4 47 137-188 8-55 (56)
43 2yt5_A Metal-response element- 98.4 5.8E-08 2E-12 63.6 2.0 55 139-193 7-65 (66)
44 2puy_A PHD finger protein 21A; 98.4 2.9E-08 9.9E-13 63.9 0.1 48 139-191 6-54 (60)
45 2ku3_A Bromodomain-containing 98.4 2.7E-08 9.2E-13 66.1 -0.2 49 140-191 19-68 (71)
46 3asl_A E3 ubiquitin-protein li 98.4 8.2E-08 2.8E-12 63.7 2.0 47 142-189 23-69 (70)
47 2e6r_A Jumonji/ARID domain-con 98.4 7.2E-08 2.5E-12 67.4 1.5 51 138-190 16-67 (92)
48 1wev_A Riken cDNA 1110020M19; 98.4 2.2E-07 7.6E-12 64.3 3.2 55 138-192 16-75 (88)
49 1mm2_A MI2-beta; PHD, zinc fin 98.3 1.7E-07 5.8E-12 60.4 1.7 48 137-189 8-56 (61)
50 2e6s_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 61.9 3.2 46 142-188 31-76 (77)
51 1fp0_A KAP-1 corepressor; PHD 98.3 9.4E-07 3.2E-11 60.9 4.6 61 136-201 23-84 (88)
52 2l43_A N-teminal domain from h 98.2 6.6E-08 2.2E-12 67.0 -1.5 52 139-193 27-79 (88)
53 3shb_A E3 ubiquitin-protein li 98.2 5.3E-07 1.8E-11 60.8 2.1 46 142-188 31-76 (77)
54 3o36_A Transcription intermedi 98.1 3.1E-06 1.1E-10 66.3 4.4 48 139-191 5-53 (184)
55 2lri_C Autoimmune regulator; Z 98.0 8.7E-07 3E-11 57.9 0.9 43 142-189 17-59 (66)
56 3u5n_A E3 ubiquitin-protein li 98.0 2.3E-06 7.7E-11 68.4 3.0 49 138-191 7-56 (207)
57 2kwj_A Zinc finger protein DPF 97.9 1.9E-06 6.4E-11 62.5 0.8 49 142-192 63-111 (114)
58 3v43_A Histone acetyltransfera 97.9 4E-06 1.4E-10 60.5 2.4 46 142-188 66-111 (112)
59 4gne_A Histone-lysine N-methyl 97.9 3.3E-06 1.1E-10 60.4 1.8 45 137-187 14-60 (107)
60 4bbq_A Lysine-specific demethy 97.7 6E-06 2.1E-10 59.9 0.5 42 149-190 71-115 (117)
61 2ysm_A Myeloid/lymphoid or mix 97.7 1.2E-05 4E-10 57.9 1.4 49 140-190 56-105 (111)
62 2ro1_A Transcription intermedi 97.5 7.4E-05 2.5E-09 58.8 3.6 47 140-191 4-51 (189)
63 2ysm_A Myeloid/lymphoid or mix 97.3 0.00014 4.8E-09 52.2 2.7 48 138-187 7-55 (111)
64 3v43_A Histone acetyltransfera 97.0 0.0001 3.4E-09 53.1 -0.1 38 150-187 23-62 (112)
65 2kwj_A Zinc finger protein DPF 96.9 0.00028 9.7E-09 50.8 1.7 38 150-187 20-59 (114)
66 2lbm_A Transcriptional regulat 96.3 0.00025 8.7E-09 53.0 -2.1 51 135-189 60-117 (142)
67 3ql9_A Transcriptional regulat 95.6 0.00093 3.2E-08 49.1 -1.8 51 135-189 54-111 (129)
68 2m0o_A PHD finger protein 1; t 90.7 0.22 7.5E-06 32.6 3.2 29 21-51 25-53 (79)
69 4hcz_A PHD finger protein 1; p 90.6 0.36 1.2E-05 29.9 4.0 29 22-52 3-31 (58)
70 2eqj_A Metal-response element- 87.9 0.73 2.5E-05 29.4 4.0 28 22-51 13-40 (66)
71 2e5p_A Protein PHF1, PHD finge 87.4 0.93 3.2E-05 28.9 4.3 30 20-51 7-36 (68)
72 2d8s_A Cellular modulator of i 87.1 0.25 8.4E-06 32.9 1.6 53 138-193 15-71 (80)
73 2xk0_A Polycomb protein PCL; t 86.1 0.65 2.2E-05 29.8 3.0 25 21-47 14-38 (69)
74 2l8d_A Lamin-B receptor; DNA b 84.7 0.6 2E-05 29.6 2.4 29 20-49 7-35 (66)
75 1iym_A EL5; ring-H2 finger, ub 84.7 0.23 8E-06 29.8 0.5 43 142-189 10-52 (55)
76 2e5q_A PHD finger protein 19; 84.3 0.44 1.5E-05 29.9 1.6 30 20-51 5-34 (63)
77 3a1b_A DNA (cytosine-5)-methyl 83.9 0.074 2.5E-06 40.2 -2.5 54 133-190 74-135 (159)
78 2dig_A Lamin-B receptor; tudor 82.6 1.1 3.8E-05 28.4 3.0 28 21-49 11-38 (68)
79 2pv0_B DNA (cytosine-5)-methyl 82.3 0.1 3.5E-06 45.0 -2.5 53 134-190 89-149 (386)
80 2l7p_A Histone-lysine N-methyl 82.2 0.68 2.3E-05 32.2 2.1 37 147-185 22-58 (100)
81 1wil_A KIAA1045 protein; ring 82.1 0.071 2.4E-06 35.8 -2.8 47 140-188 17-75 (89)
82 2ect_A Ring finger protein 126 81.0 1.4 4.9E-05 28.2 3.3 50 138-193 15-65 (78)
83 2ep4_A Ring finger protein 24; 80.9 0.69 2.4E-05 29.5 1.7 48 138-191 15-63 (74)
84 1v87_A Deltex protein 2; ring- 80.1 0.34 1.2E-05 33.9 -0.0 40 154-193 56-95 (114)
85 2ecm_A Ring finger and CHY zin 78.5 0.38 1.3E-05 28.8 -0.2 43 142-189 10-52 (55)
86 1weq_A PHD finger protein 7; s 77.0 1.8 6E-05 29.1 2.7 48 137-188 25-78 (85)
87 2a7y_A Hypothetical protein RV 75.3 2.3 8E-05 28.2 2.9 39 24-63 7-45 (83)
88 3zzs_A Transcription attenuati 74.2 7.9 0.00027 24.1 4.9 47 58-104 13-59 (65)
89 3p8d_A Medulloblastoma antigen 73.4 3 0.0001 26.6 3.0 28 22-51 6-33 (67)
90 1gtf_A Trp RNA-binding attenua 71.6 11 0.00038 23.8 5.3 47 58-104 17-63 (74)
91 3zte_A Tryptophan operon RNA-b 71.2 11 0.00037 24.3 5.2 47 58-104 21-67 (78)
92 2e61_A Zinc finger CW-type PWW 69.9 3.1 0.00011 26.7 2.5 34 149-185 14-49 (69)
93 2lq6_A Bromodomain-containing 67.1 2 6.9E-05 28.9 1.2 33 135-169 14-49 (87)
94 3qii_A PHD finger protein 20; 67.0 4.8 0.00016 27.0 3.0 30 20-51 19-48 (85)
95 3llr_A DNA (cytosine-5)-methyl 64.1 3.5 0.00012 30.8 2.2 45 20-66 14-61 (154)
96 4fu6_A PC4 and SFRS1-interacti 63.7 4 0.00014 30.2 2.5 42 21-64 21-64 (153)
97 2gfu_A DNA mismatch repair pro 63.4 4.6 0.00016 29.2 2.7 45 19-65 19-69 (134)
98 1wfk_A Zinc finger, FYVE domai 61.6 5.6 0.00019 26.6 2.7 56 138-193 9-67 (88)
99 1nz9_A Transcription antitermi 61.3 8.2 0.00028 23.4 3.2 43 22-67 4-46 (58)
100 3t7l_A Zinc finger FYVE domain 60.5 1.7 5.7E-05 29.4 -0.2 61 133-193 15-77 (90)
101 2l0b_A E3 ubiquitin-protein li 58.7 1.2 4E-05 29.9 -1.2 48 138-191 40-88 (91)
102 2ct0_A Non-SMC element 1 homol 57.9 3.4 0.00012 26.8 1.0 47 139-191 16-63 (74)
103 1zbd_B Rabphilin-3A; G protein 56.6 2.8 9.4E-05 30.6 0.4 56 137-193 54-111 (134)
104 3qby_A Hepatoma-derived growth 56.2 6.3 0.00021 26.7 2.2 25 22-48 5-29 (94)
105 2yw8_A RUN and FYVE domain-con 55.5 3.7 0.00013 27.1 0.9 59 132-190 13-73 (82)
106 2e6z_A Transcription elongatio 55.1 5.4 0.00018 24.6 1.6 40 21-65 6-45 (59)
107 1ri0_A Hepatoma-derived growth 55.0 3.1 0.00011 29.2 0.4 42 20-63 17-60 (110)
108 6rxn_A Rubredoxin; electron tr 54.2 4.9 0.00017 23.6 1.2 36 154-190 5-40 (46)
109 2ro0_A Histone acetyltransfera 54.2 16 0.00053 24.8 3.9 28 22-52 23-50 (92)
110 2kiz_A E3 ubiquitin-protein li 53.9 3.3 0.00011 25.7 0.4 49 138-192 14-63 (69)
111 1x4u_A Zinc finger, FYVE domai 53.7 9.4 0.00032 25.1 2.7 61 131-191 7-77 (84)
112 1x4j_A Ring finger protein 38; 53.4 1.6 5.4E-05 27.9 -1.2 48 138-191 23-71 (75)
113 1joc_A EEA1, early endosomal a 53.1 5 0.00017 28.8 1.3 59 131-189 62-122 (125)
114 2l89_A PWWP domain-containing 52.0 15 0.00052 25.4 3.7 43 20-64 3-52 (108)
115 1khc_A DNA cytosine-5 methyltr 51.2 4 0.00014 30.2 0.5 43 20-64 9-54 (147)
116 1wgs_A MYST histone acetyltran 49.7 19 0.00064 26.1 4.0 38 21-60 11-49 (133)
117 2ct2_A Tripartite motif protei 48.4 3.6 0.00012 26.7 -0.1 53 138-193 15-69 (88)
118 1faq_A RAF-1; transferase, ser 47.8 9.9 0.00034 22.3 1.9 31 137-170 13-44 (52)
119 2equ_A PHD finger protein 20-l 46.7 16 0.00056 23.6 2.9 28 21-50 8-35 (74)
120 4a4f_A SurviVal of motor neuro 46.7 16 0.00054 22.7 2.8 29 21-50 7-35 (64)
121 1mhn_A SurviVal motor neuron p 46.5 37 0.0013 20.4 4.5 28 22-50 3-30 (59)
122 2daq_A WHSC1L1 protein, isofor 45.4 7.7 0.00026 26.9 1.3 29 18-48 4-32 (110)
123 1dx8_A Rubredoxin; electron tr 45.1 17 0.00058 23.3 2.8 39 154-193 8-53 (70)
124 2ecl_A Ring-box protein 2; RNF 44.5 0.96 3.3E-05 29.7 -3.5 35 153-192 42-76 (81)
125 3oa6_A MALE-specific lethal 3 44.2 40 0.0014 23.5 4.8 33 21-53 18-52 (110)
126 4rxn_A Rubredoxin; electron tr 43.8 11 0.00039 22.8 1.7 37 154-191 4-47 (54)
127 2f5k_A MORF-related gene 15 is 43.7 41 0.0014 23.1 4.8 36 21-60 21-56 (102)
128 2rnz_A Histone acetyltransfera 42.7 27 0.00093 23.7 3.7 28 22-52 25-52 (94)
129 4a0k_B E3 ubiquitin-protein li 41.9 5.4 0.00018 28.3 0.0 30 157-191 82-111 (117)
130 3m9q_A Protein MALE-specific l 41.4 44 0.0015 22.9 4.6 37 16-52 13-51 (101)
131 2enn_A NPKC-theta, protein kin 40.2 17 0.00058 23.4 2.3 34 137-170 33-68 (77)
132 1vq8_T 50S ribosomal protein L 37.5 37 0.0013 24.1 3.9 38 20-60 40-77 (120)
133 3p8b_B Transcription antitermi 37.4 29 0.00099 25.3 3.5 43 21-66 90-132 (152)
134 2lcc_A AT-rich interactive dom 37.2 10 0.00034 24.7 0.7 30 22-51 5-35 (76)
135 2yuu_A NPKC-delta, protein kin 37.1 20 0.00068 23.4 2.3 34 137-170 27-62 (83)
136 1v5n_A PDI-like hypothetical p 36.2 9 0.00031 25.7 0.4 34 140-175 49-83 (89)
137 2fnf_X Putative RAS effector N 35.8 17 0.00057 23.2 1.6 32 136-169 33-65 (72)
138 2enz_A NPKC-theta, protein kin 35.7 26 0.00089 21.6 2.5 34 137-170 22-57 (65)
139 3j21_U 50S ribosomal protein L 34.8 46 0.0016 23.6 4.0 30 21-52 44-73 (121)
140 1z2q_A LM5-1; membrane protein 34.7 30 0.001 22.6 2.8 61 131-191 14-78 (84)
141 1g5v_A SurviVal motor neuron p 34.6 36 0.0012 22.7 3.2 28 22-50 10-37 (88)
142 2v3b_B Rubredoxin 2, rubredoxi 34.6 18 0.00062 21.9 1.6 15 177-191 33-47 (55)
143 2eli_A Protein kinase C alpha 34.2 34 0.0012 22.4 3.1 34 137-170 27-62 (85)
144 3u5e_Y L33, YL33, 60S ribosoma 33.3 56 0.0019 23.4 4.2 37 21-60 48-84 (127)
145 2zkr_t 60S ribosomal protein L 32.6 41 0.0014 24.7 3.5 44 21-67 47-91 (145)
146 2kn9_A Rubredoxin; metalloprot 32.6 18 0.00062 23.8 1.4 40 153-192 27-72 (81)
147 1e8j_A Rubredoxin; iron-sulfur 32.2 22 0.00074 21.3 1.6 13 177-189 33-45 (52)
148 3v2d_Y 50S ribosomal protein L 32.1 41 0.0014 23.4 3.3 29 22-52 6-34 (110)
149 1ptq_A Protein kinase C delta 32.0 13 0.00045 21.5 0.6 34 137-170 10-45 (50)
150 1qd7_I S17 ribosomal protein; 31.4 1E+02 0.0035 20.5 5.1 27 13-39 40-66 (89)
151 2eko_A Histone acetyltransfera 31.1 39 0.0014 22.5 2.9 32 21-52 8-41 (87)
152 1k1z_A VAV; SH3, proto-oncogen 31.0 42 0.0015 21.1 3.1 27 19-45 33-59 (78)
153 2d8t_A Dactylidin, ring finger 30.9 5.1 0.00018 25.1 -1.5 49 138-195 15-64 (71)
154 3r8s_U 50S ribosomal protein L 30.8 50 0.0017 22.7 3.5 28 22-51 3-30 (102)
155 2zet_C Melanophilin; complex, 30.7 6.3 0.00022 29.4 -1.2 53 137-193 67-121 (153)
156 3mjh_B Early endosome antigen 30.1 18 0.00062 19.7 0.9 14 179-192 4-17 (34)
157 2qqr_A JMJC domain-containing 29.6 51 0.0017 23.3 3.5 27 22-50 5-31 (118)
158 2ldm_A Uncharacterized protein 35.7 11 0.00039 24.9 0.0 28 21-50 5-32 (81)
159 1yk4_A Rubredoxin, RD; electro 29.4 35 0.0012 20.3 2.2 14 177-190 32-45 (52)
160 1y02_A CARP2, FYVE-ring finger 29.0 11 0.00036 26.9 -0.2 52 134-190 15-67 (120)
161 3m9p_A MALE-specific lethal 3 28.9 1E+02 0.0036 21.4 4.9 35 18-52 15-51 (110)
162 3bcw_A Uncharacterized protein 28.9 69 0.0024 22.3 4.2 15 21-35 89-103 (123)
163 1o5u_A Novel thermotoga mariti 28.9 57 0.0019 21.9 3.6 22 14-35 62-84 (101)
164 2zjr_R 50S ribosomal protein L 28.2 40 0.0014 23.7 2.7 35 22-59 15-49 (115)
165 1yop_A KTI11P; zinc finger, me 28.1 14 0.00048 24.5 0.3 26 140-165 25-57 (83)
166 2vrw_B P95VAV, VAV1, proto-onc 27.7 25 0.00086 29.8 1.9 35 135-169 354-390 (406)
167 1bor_A Transcription factor PM 27.5 29 0.001 20.4 1.7 28 158-193 23-50 (56)
168 2ke9_A Caskin-2; SH3 domain, A 27.0 55 0.0019 21.1 3.1 27 19-46 34-60 (83)
169 1s24_A Rubredoxin 2; electron 26.6 42 0.0014 22.4 2.4 39 152-191 34-79 (87)
170 2opk_A Hypothetical protein; p 26.2 55 0.0019 22.1 3.2 22 14-35 66-89 (112)
171 1g2b_A Spectrin alpha chain; c 25.9 44 0.0015 19.9 2.3 26 19-45 36-61 (62)
172 4b6d_A RAC GTPase-activating p 25.6 25 0.00084 21.7 1.1 32 138-169 19-51 (61)
173 2z0t_A Putative uncharacterize 25.5 56 0.0019 22.7 3.1 40 6-50 17-56 (109)
174 2jvv_A Transcription antitermi 25.3 77 0.0026 23.6 4.1 45 22-69 127-171 (181)
175 1wge_A Hypothetical protein 26 24.9 23 0.0008 23.4 0.9 24 141-164 33-63 (83)
176 1vd4_A Transcription initiatio 24.9 33 0.0011 20.3 1.6 42 150-193 11-52 (62)
177 2oqk_A Putative translation in 24.7 55 0.0019 22.9 2.9 26 23-50 71-96 (117)
178 3iz5_Y 60S ribosomal protein L 24.6 85 0.0029 23.1 4.0 29 21-51 47-75 (150)
179 4hae_A CDY-like 2, chromodomai 24.0 1.4E+02 0.0049 19.2 4.7 30 37-66 21-50 (81)
180 2x3w_D Syndapin I, protein kin 23.8 49 0.0017 19.4 2.2 26 20-45 19-44 (60)
181 2jr7_A DPH3 homolog; DESR1, CS 23.7 14 0.00047 24.9 -0.4 14 151-164 43-56 (89)
182 1y8f_A UNC-13 homolog A, MUNC1 23.7 28 0.00095 21.6 1.1 33 137-169 23-57 (66)
183 1vyx_A ORF K3, K3RING; zinc-bi 23.5 7 0.00024 24.0 -1.8 33 156-191 26-58 (60)
184 1e4u_A Transcriptional repress 23.3 21 0.00073 23.0 0.5 51 138-193 11-63 (78)
185 2lrq_A Protein MRG15, NUA4 com 28.9 17 0.0006 24.1 0.0 28 21-51 11-38 (85)
186 2jwo_A RAG-2, V(D)J recombinat 23.0 56 0.0019 21.2 2.4 33 153-185 38-75 (82)
187 1wie_A RIM binding protein 2; 23.0 58 0.002 21.5 2.7 27 19-45 38-64 (96)
188 1gcq_C VAV proto-oncogene; SH3 22.9 59 0.002 19.8 2.6 26 20-45 26-51 (70)
189 4a17_S RPL26, 60S ribosomal pr 22.7 1E+02 0.0035 22.3 4.0 29 21-51 47-75 (135)
190 2yur_A Retinoblastoma-binding 22.7 17 0.00056 22.8 -0.2 47 138-190 15-62 (74)
191 2bud_A Males-absent on the fir 22.6 1.3E+02 0.0045 20.2 4.3 26 25-52 17-42 (92)
192 3lrq_A E3 ubiquitin-protein li 22.6 19 0.00064 24.2 0.1 47 140-193 24-71 (100)
193 2csi_A RIM-BP2, RIM binding pr 22.5 62 0.0021 20.2 2.7 27 19-45 29-55 (76)
194 3e9g_A Chromatin modification- 22.3 87 0.003 22.5 3.6 31 21-54 6-36 (130)
195 3lwc_A Uncharacterized protein 22.3 60 0.0021 22.4 2.8 21 15-35 73-93 (119)
196 2kxc_A Brain-specific angiogen 22.2 62 0.0021 19.5 2.5 27 20-46 23-49 (67)
197 3s6w_A Tudor domain-containing 22.2 47 0.0016 19.5 1.9 28 23-51 2-29 (54)
198 2a28_A BZZ1 protein; SH3 domai 21.9 64 0.0022 18.4 2.5 26 20-45 16-41 (54)
199 1rfh_A RAS association (ralgds 21.9 20 0.00069 21.8 0.1 32 137-170 21-53 (59)
200 2jt4_A Cytoskeleton assembly c 21.7 59 0.002 19.8 2.4 26 20-45 22-47 (71)
201 3nw0_A Non-structural maintena 21.6 17 0.00058 29.0 -0.4 47 138-190 180-227 (238)
202 2vqe_Q 30S ribosomal protein S 21.6 53 0.0018 22.7 2.2 24 13-36 41-64 (105)
203 2d8h_A SH3YL1 protein; SH3 dom 21.5 97 0.0033 19.4 3.5 27 19-45 32-59 (80)
204 1spk_A RSGI RUH-010, riken cDN 21.5 64 0.0022 19.8 2.5 27 19-45 23-49 (72)
205 2oaw_A Spectrin alpha chain, b 21.3 66 0.0023 19.1 2.5 27 19-46 16-42 (65)
206 2lj0_A Sorbin and SH3 domain-c 21.0 50 0.0017 20.3 1.9 26 19-45 21-46 (65)
207 2j5u_A MREC protein; bacterial 20.9 2.8E+02 0.0095 21.9 6.8 41 21-61 168-211 (255)
208 2l9z_A PR domain zinc finger p 20.6 38 0.0013 19.0 1.1 18 152-169 10-27 (39)
209 2bz8_A SH3-domain kinase bindi 20.5 68 0.0023 18.6 2.4 26 19-45 16-41 (58)
210 1ujy_A RHO guanine nucleotide 20.3 85 0.0029 19.4 3.0 26 19-45 25-50 (76)
211 3vhs_A ATPase wrnip1; zinc fin 20.3 51 0.0018 16.6 1.4 12 151-162 4-15 (29)
212 2eps_A POZ-, at HOOK-, and zin 20.2 45 0.0015 18.8 1.5 41 151-191 10-52 (54)
213 1tg0_A BBC1 protein, myosin ta 20.2 56 0.0019 19.8 2.0 27 19-46 22-48 (68)
214 3uej_A NPKC-delta, protein kin 20.2 28 0.00096 21.4 0.5 34 137-170 19-54 (65)
215 1jo8_A ABP1P, actin binding pr 20.2 67 0.0023 18.7 2.3 27 19-46 15-41 (58)
216 2do3_A Transcription elongatio 20.2 85 0.0029 19.9 2.8 27 22-50 17-43 (69)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.97 E-value=6.9e-31 Score=206.89 Aligned_cols=129 Identities=27% Similarity=0.429 Sum_probs=102.6
Q ss_pred CCCcceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeecccccCCcccccCCCCeeeee
Q 027964 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 85 (216)
Q Consensus 6 ~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~d~~~~~~~~~~~~ELF~s 85 (216)
+++.+|.++.++| ++|++||+|||.+++.+.++|||+|++||++.+|.++++|+|||||+||.++....+.++|||+|
T Consensus 12 ~~r~~y~~~~~~g--~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S 89 (174)
T 1w4s_A 12 LHRTYSQDCSFKN--SMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKS 89 (174)
T ss_dssp ----------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEE
T ss_pred CCcEEeEEEEECC--EEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEe
Confidence 3444444555664 69999999999998766789999999999999999999999999999999875555679999999
Q ss_pred CccceeecceeeeeeEEEeeeccccccC---CCCcceEEeeeeecccCcccCCC
Q 027964 86 DHYDVQSAHTIEGKCTVHTFKNYTKLEN---VGAEDYFCRFEYKAATGGFTPDR 136 (216)
Q Consensus 86 ~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~ffcr~~yd~~~~~f~p~~ 136 (216)
++.|++|+++|.|||.|++..+|.+..+ ...+.|||++.||..++.|.+-.
T Consensus 90 ~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~ 143 (174)
T 1w4s_A 90 DYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIK 143 (174)
T ss_dssp EEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECS
T ss_pred CCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCc
Confidence 9999999999999999999999976643 23466999999999999998643
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.91 E-value=1.8e-24 Score=207.23 Aligned_cols=128 Identities=27% Similarity=0.401 Sum_probs=111.1
Q ss_pred CCCCCCcceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeecccccCCcccccCCCCee
Q 027964 3 KTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82 (216)
Q Consensus 3 ~~~~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~d~~~~~~~~~~~~EL 82 (216)
|++.++.+|.++.++| ++|+|||+|||.+++++.++|||+|++||++.+|.++|+|+|||||+||.+++. ++++||
T Consensus 141 k~~~~~~~Y~s~~v~g--~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~~~El 216 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDA--ETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SDPLEL 216 (1002)
T ss_dssp CCBTTEEECSEEEETT--EEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SCTTEE
T ss_pred ccccCceeeeEEEECC--EEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CCCCce
Confidence 4556778888998875 699999999999988778889999999999998999999999999999999987 789999
Q ss_pred eeeCccceeecceeeeeeEEEeeec---cccc---------cCCCCcceEEeeeeecccCcccC
Q 027964 83 FLSDHYDVQSAHTIEGKCTVHTFKN---YTKL---------ENVGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 83 F~s~~~d~~~~~~I~gkc~V~~~~~---~~~~---------~~~~~~~ffcr~~yd~~~~~f~p 134 (216)
|+|+++|++++++|.|||.|++.+. |... .....++|||++.|++.++.|..
T Consensus 217 Flsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 217 FLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred EeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 9999999999999999999998654 2111 11235789999999999999984
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.91 E-value=7.2e-24 Score=207.26 Aligned_cols=128 Identities=23% Similarity=0.392 Sum_probs=108.1
Q ss_pred CCCCCCcceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeecccccCCcccccCCCCee
Q 027964 3 KTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82 (216)
Q Consensus 3 ~~~~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~d~~~~~~~~~~~~EL 82 (216)
|...|+.+|.++.++| ++|++||+|||.+++++.++|||+|++||++.+|..+|+|+|||||+||.+++. ++++||
T Consensus 452 k~~~~~~~Y~~~~v~g--~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~~rEl 527 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDE--EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SDPLEL 527 (1330)
T ss_dssp CCC--CEEECSEEEES--SEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SCTTEE
T ss_pred eccCCceeeeEEEECC--EEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cCCCeE
Confidence 4556778888999987 599999999999887666899999999999999999999999999999998875 889999
Q ss_pred eeeCccceeecceeeeeeEEEeeec---ccccc----------CCCCcceEEeeeeecccCcccC
Q 027964 83 FLSDHYDVQSAHTIEGKCTVHTFKN---YTKLE----------NVGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 83 F~s~~~d~~~~~~I~gkc~V~~~~~---~~~~~----------~~~~~~ffcr~~yd~~~~~f~p 134 (216)
|+|+++|++++.+|.|||.|++..+ |..+. ....++|||++.||+..+.|..
T Consensus 528 FlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~ 592 (1330)
T 3av4_A 528 FLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592 (1330)
T ss_dssp EEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEEC
T ss_pred EEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCC
Confidence 9999999999999999999999666 43221 1244679999999999998873
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.89 E-value=5.6e-22 Score=151.20 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=102.4
Q ss_pred CcceeeEEEcCCC---eEEccCCeEEEccCCCCCCCeEEEEeEEEEc---CCCCEEEEEEEeecccccCCccccc----C
Q 027964 8 KKDLDSYNIKGTN---KVVRPGDCVLMRPADSDKPPYVARVEKIEAD---HRNNVKVRVRWYYRPEESIGGRRQF----H 77 (216)
Q Consensus 8 ~~~y~~~~v~~~~---~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~---~~g~~~v~v~Wfyrp~d~~~~~~~~----~ 77 (216)
..+|+++.++..| .++++||+|+|.+.+. +.+|||+|++|+++ ....+.++||||+||+|++.+.... +
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 5678899886544 8999999999999885 67799999999885 2345889999999999999875443 4
Q ss_pred CCCeeeeeCccc---eeecceeeeeeEEEeeeccccc--cCCCCcceEEeeeeecccCcccC
Q 027964 78 GAKELFLSDHYD---VQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 78 ~~~ELF~s~~~d---~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p 134 (216)
+.+|||++++.+ .+++++|.|+|+|+.++.++.+ +....++||.|.++|.. .|.|
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~p 159 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAP 159 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEE
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--ccee
Confidence 578999998874 7999999999999999777666 44567899999999876 4544
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.81 E-value=1.1e-19 Score=174.35 Aligned_cols=128 Identities=23% Similarity=0.373 Sum_probs=104.6
Q ss_pred CCCCcceeeEEEcCCCeEEccCCeEEEccCC-----------------------------------------CCCCCeEE
Q 027964 5 KPGKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVA 43 (216)
Q Consensus 5 ~~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~I~ 43 (216)
.+|+..|.++..+ |..|++||+|||.++. .+.|++||
T Consensus 319 ~~~~~~~~~~~~~--g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKN--GILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEET--TEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEEC--CEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 3456667777765 5799999999999922 23478999
Q ss_pred EEeEEEEcCCCC-------EEEEEEEeecccccCCccc--ccCCCCeeeeeCccceeecceeeeeeEEEeeeccccccC-
Q 027964 44 RVEKIEADHRNN-------VKVRVRWYYRPEESIGGRR--QFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN- 113 (216)
Q Consensus 44 ~I~~i~~~~~g~-------~~v~v~Wfyrp~d~~~~~~--~~~~~~ELF~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~- 113 (216)
+|++|+.+..+. ++|+|+|||||+||+.+.. ...+.+|||+|++.+++|+.+|.|||.|++.+++.....
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999876554 9999999999999986532 235789999999999999999999999999988864433
Q ss_pred ---CCCcceEEeeeeecccCcccC
Q 027964 114 ---VGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 114 ---~~~~~ffcr~~yd~~~~~f~p 134 (216)
.+++.||++..||+.++.|.+
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~~ 500 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFED 500 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEEC
T ss_pred hccCCCCeEEEEEEEeCCCCeeec
Confidence 345889999999999999973
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.81 E-value=5e-20 Score=174.41 Aligned_cols=125 Identities=17% Similarity=0.334 Sum_probs=104.9
Q ss_pred CCCcceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeecccccCCcc-------cccCC
Q 027964 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGR-------RQFHG 78 (216)
Q Consensus 6 ~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~d~~~~~-------~~~~~ 78 (216)
+.++||.++.|+| ++|++||+|||..++ +.+++||+|.+|++..+|..+|+|+|||||+||..+. ...++
T Consensus 43 ~~~~~~~~~~~~~--~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d 119 (784)
T 4ft4_B 43 KARCHYRSAKVDN--VVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119 (784)
T ss_dssp CEEEECSEEEETT--EEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCC
T ss_pred ccceeeeeeeECC--EEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccc
Confidence 4578999999985 799999999999865 5789999999999999999999999999999998653 23468
Q ss_pred CCeeeeeCccceeecceeeeeeEEEeeeccccccC----CCCcceEEeeeeecccCccc
Q 027964 79 AKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN----VGAEDYFCRFEYKAATGGFT 133 (216)
Q Consensus 79 ~~ELF~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~----~~~~~ffcr~~yd~~~~~f~ 133 (216)
.+|||+|++.+++++.+|.|||.|++......... ....+|||+..|......|.
T Consensus 120 ~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 120 PRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp TTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred cceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCcc
Confidence 89999999999999999999999998765433222 12356999999988877765
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.73 E-value=6.3e-18 Score=165.59 Aligned_cols=126 Identities=24% Similarity=0.427 Sum_probs=102.7
Q ss_pred CCCcceeeEEEcCCCeEEccCCeEEEccCC-----------------------------------------CCCCCeEEE
Q 027964 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVAR 44 (216)
Q Consensus 6 ~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~I~~ 44 (216)
+|+..|.+++.+| +.|++||+|||.++. .+.+++||+
T Consensus 632 ~~~~~Y~~~~~~g--~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Igq 709 (1330)
T 3av4_A 632 DGRVYCSSITKNG--VVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGR 709 (1330)
T ss_dssp SSSEEEEEEEETT--EEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEE
T ss_pred cCceeeeEEEECC--EEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEE
Confidence 4556676777664 799999999998761 135689999
Q ss_pred EeEEEEcCC------CCEEEEEEEeecccccCCcc-c-ccCCCCeeeeeCccceeecceeeeeeEEEeeecccccc----
Q 027964 45 VEKIEADHR------NNVKVRVRWYYRPEESIGGR-R-QFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLE---- 112 (216)
Q Consensus 45 I~~i~~~~~------g~~~v~v~Wfyrp~d~~~~~-~-~~~~~~ELF~s~~~d~~~~~~I~gkc~V~~~~~~~~~~---- 112 (216)
|.+||...+ +.++|+|+|||||+||..+. . ...+.+|||+|++.++++++.|.|||.|.+..++....
T Consensus 710 I~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~ 789 (1330)
T 3av4_A 710 IKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYS 789 (1330)
T ss_dssp EEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHH
T ss_pred EEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccc
Confidence 999997654 57999999999999998763 2 24689999999999999999999999999988775421
Q ss_pred CCCCcceEEeeeeecccCccc
Q 027964 113 NVGAEDYFCRFEYKAATGGFT 133 (216)
Q Consensus 113 ~~~~~~ffcr~~yd~~~~~f~ 133 (216)
..+++.|||+..||+.++.|.
T Consensus 790 ~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 790 QGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HTSTTEEEESCEEETTTTEEE
T ss_pred cCCCCeEEEEEEecccCCeec
Confidence 124678999999999998885
No 8
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.72 E-value=1.9e-18 Score=118.48 Aligned_cols=65 Identities=38% Similarity=0.915 Sum_probs=58.4
Q ss_pred cCcccCCCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 129 TGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 129 ~~~f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
.+.|.++...++|+|++++++++.|||||.|++|||..||+++...+..++.|+|+.|....+..
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCC
Confidence 46788889999999999998889999999999999999999999887777899999999876543
No 9
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.63 E-value=1.4e-15 Score=122.55 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=96.8
Q ss_pred cceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcC-CCCEEEEEEEeecccccCC-------ccc------
Q 027964 9 KDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR------ 74 (216)
Q Consensus 9 ~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~-~g~~~v~v~Wfyrp~d~~~-------~~~------ 74 (216)
+..=......+|..+++||.|+|..++ .+.+.++.|.+|.... +.-+.+.|.||+|..|+.. ...
T Consensus 39 ~~~i~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~ 117 (232)
T 2fl7_A 39 GENVFLKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDH 117 (232)
T ss_dssp -CEEEEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTC
T ss_pred CceEEEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhccccc
Confidence 333345556789999999999998875 4677888888888765 5569999999999999965 111
Q ss_pred --cc--------CCCCeeeeeCccceeecceeeeeeEEEeeeccccc--cCCCCcceEEeeeeecccCcccC
Q 027964 75 --QF--------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 75 --~~--------~~~~ELF~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p 134 (216)
.+ ...+|||+|.+.+.+-+.+|+++|+|++.++|..+ +.....+||||+.+|+....|.+
T Consensus 118 ~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (232)
T 2fl7_A 118 PLEFYKDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVP 189 (232)
T ss_dssp CHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEE
T ss_pred chhhhhhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCcccc
Confidence 23 68999999999999999999999999999999876 44567889999999998777874
No 10
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.62 E-value=1.3e-15 Score=123.09 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=102.7
Q ss_pred cceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcC-CCCEEEEEEEeecccccCC-------ccc------
Q 027964 9 KDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR------ 74 (216)
Q Consensus 9 ~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~-~g~~~v~v~Wfyrp~d~~~-------~~~------ 74 (216)
+..=......+|..|++||.|+|..++ .+.+.++.|.+|.... +..+.+.|.||+|..|+.. ...
T Consensus 39 ~~~i~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~ 117 (238)
T 1m4z_A 39 KTEHYLKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNR 117 (238)
T ss_dssp -CEEEEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCC
T ss_pred cccEEEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhccccc
Confidence 333345556789999999999998875 4678888889998766 5568899999999999965 111
Q ss_pred --cc--------CCCCeeeeeCccceeecceeeeeeEEEeeeccccc--cCCCCcceEEeeeeecccCcccC
Q 027964 75 --QF--------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (216)
Q Consensus 75 --~~--------~~~~ELF~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p 134 (216)
.+ ...+|||+|.+.+.+-+..|+++|.|++.++|..+ +.....+||||+.+|+....|.+
T Consensus 118 ~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (238)
T 1m4z_A 118 PLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVD 189 (238)
T ss_dssp CHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEE
T ss_pred chhhhhhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCcccc
Confidence 23 68999999999999999999999999999999866 45567889999999998777875
No 11
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.62 E-value=1.5e-16 Score=104.71 Aligned_cols=56 Identities=27% Similarity=0.771 Sum_probs=50.2
Q ss_pred CCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
....+| +|+++++++++|||||.|++|||..||+++...++.++.|+|+.|..++.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 467899 99999988899999999999999999999988776778999999987644
No 12
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.62 E-value=3.5e-17 Score=111.02 Aligned_cols=59 Identities=41% Similarity=1.059 Sum_probs=52.6
Q ss_pred CCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
+..++||+|++++++++.|||||.|++|||..|||++...+..++.|+|+.|...++..
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~ 65 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKS 65 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCC
Confidence 46789999999998889999999999999999999998877677899999999876543
No 13
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.53 E-value=2.2e-15 Score=100.04 Aligned_cols=55 Identities=25% Similarity=0.663 Sum_probs=46.4
Q ss_pred ccCCCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 132 FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 132 f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
...+...++|+|+++++ +++||+||.|+.|||+.|||++...+ ++.|+|+.|..+
T Consensus 13 ~~~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~--~~~~~C~~C~~s 67 (68)
T 3o70_A 13 NLYFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRDS 67 (68)
T ss_dssp -CTTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSC--CSSCCCHHHHTC
T ss_pred cCCCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcccC--CCcEECCCCCCC
Confidence 34457789999999986 77999999999999999999998643 479999999764
No 14
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=94.76 Aligned_cols=49 Identities=29% Similarity=0.815 Sum_probs=43.1
Q ss_pred CcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 137 ~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
..++|+|+++++ +++||+||.|+.|||..|||++..++ ++.|+|+.|..
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~--~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGC--CSSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcccC--CCcEECcCCCC
Confidence 468999999986 78999999999999999999998743 47999999975
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.50 E-value=3.7e-15 Score=100.24 Aligned_cols=56 Identities=32% Similarity=0.758 Sum_probs=47.7
Q ss_pred CCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
+...++|+|+++++.+..||+||.|+.|||..||+++...+ .++.|+|+.|..+.+
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~-~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADA-LPSKFLCFRCIELSG 68 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC-CCSCCCCHHHHHHCS
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCcccc-CCCcEECCCccCCCC
Confidence 46789999999987677999999999999999999987543 457999999987643
No 16
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.48 E-value=2.4e-15 Score=102.25 Aligned_cols=57 Identities=30% Similarity=0.931 Sum_probs=47.8
Q ss_pred CCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhc----CCCeEEcccccccccc
Q 027964 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK----KLDHFLCSDCSSDVDA 192 (216)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~----~~~~~~C~~C~~~~~~ 192 (216)
+...+||+|+++++ +++||+||.|++|||..||+++...++ ..+.|+|+.|....++
T Consensus 13 d~~~~~C~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 13 DPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CTTCCCSTTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCCCEEECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 34579999999986 679999999999999999999987643 2468999999987653
No 17
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.48 E-value=8.3e-15 Score=92.22 Aligned_cols=47 Identities=34% Similarity=0.970 Sum_probs=41.0
Q ss_pred eEEeCCCCCCCCceEeCc-cccceecCcCCCCChhhhcCCCeEEccccc
Q 027964 140 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187 (216)
Q Consensus 140 ~C~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 187 (216)
.|+|++|++++..||+|| .|++|||+.|||++...++. +.|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~-~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAEN-EDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHH-SCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCC-CCEECCCCC
Confidence 368999998889999999 89999999999999876544 789999984
No 18
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.44 E-value=1.2e-14 Score=99.23 Aligned_cols=55 Identities=27% Similarity=0.628 Sum_probs=47.5
Q ss_pred CCcceEEeCCCCCCCCceEeCc--cccceecCcCCCCChhhh----cCCCeEEccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEA----KKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~~~~~----~~~~~~~C~~C~~~~~ 191 (216)
...++|+|+++. .+++||+|| .|..|||+.|||++...+ +.++.|+|+.|.....
T Consensus 14 ~~~~~CiC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCCSSCCCC-CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEeECCCcC-CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 578999999995 467999999 999999999999998764 4567999999988654
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.41 E-value=1.1e-14 Score=95.65 Aligned_cols=49 Identities=33% Similarity=0.697 Sum_probs=43.0
Q ss_pred eEEeCCCCCCCCceEeCc-cccceecCcCCCCChhhhcCCC-----eEEcccccc
Q 027964 140 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLD-----HFLCSDCSS 188 (216)
Q Consensus 140 ~C~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~~-----~~~C~~C~~ 188 (216)
.++|++|++++.+||+|| .|++|||..|||++...++.+. .|+|+.|.+
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 459999999999999999 9999999999999987765544 999999963
No 20
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.37 E-value=8.5e-14 Score=92.44 Aligned_cols=54 Identities=28% Similarity=0.636 Sum_probs=44.0
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--ccceecCcCCCCChhhhcC---CCeEEcccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CKDWFHPSCMGMTIEEAKK---LDHFLCSDCSSDV 190 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~~w~H~~Cv~~~~~~~~~---~~~~~C~~C~~~~ 190 (216)
...++|+|+.+.+ ++.||+||. |+.|||..|||++...+.. ++.|+|+.|..++
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 4578999999764 679999995 9999999999998765433 3589999998654
No 21
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.37 E-value=8.2e-14 Score=96.98 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=41.3
Q ss_pred CCCcceEEeCCCCCCCCceEeCcccc---ceecCcCCCCChhhhcCCCeEEccc-cccc
Q 027964 135 DRVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSD-CSSD 189 (216)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~~i~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~-C~~~ 189 (216)
....+||+|+++.. +.||+||.|+ +|||+.|||++..+. ..|+|+. |...
T Consensus 23 ~~~~~yCiC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~---~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPK---GKWYCSKDCKEI 76 (90)
T ss_dssp -CCSCCSTTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTT---SCCCSSHHHHHH
T ss_pred CCCCcEEEeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCC---CCccCChhhcch
Confidence 35788999999864 4799999977 999999999987543 5899999 8754
No 22
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.35 E-value=5e-14 Score=124.70 Aligned_cols=60 Identities=37% Similarity=0.953 Sum_probs=53.8
Q ss_pred CCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRS 195 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~ 195 (216)
..++||+|++++++++.|||||.|++|||+.|||++...+..++.|+|+.|...++...+
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~ 62 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIM 62 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred CCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCchh
Confidence 568899999999888999999999999999999999988877789999999988776533
No 23
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.34 E-value=1.5e-13 Score=98.84 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=44.3
Q ss_pred EeCCCCCCCCceEeCc-cccceecCcCCCCChhhhcCC-----CeEEccccccccc
Q 027964 142 KCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKL-----DHFLCSDCSSDVD 191 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~-----~~~~C~~C~~~~~ 191 (216)
+|++|+++++.||+|+ .|++|||+.|||++...++.+ ..|+|+.|.....
T Consensus 8 iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp TTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 8999998889999998 999999999999998765554 7999999998754
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.33 E-value=3.6e-13 Score=89.99 Aligned_cols=51 Identities=29% Similarity=0.894 Sum_probs=43.0
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--cc-ceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
....||+|+++.+ +.||+||. |. +|||+.||+++..+. ..|+|+.|.....
T Consensus 14 ~~~~~C~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~---g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCSTTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCS---SCCCCTTTSSCSS
T ss_pred CCCCEEECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCC---CCEECCCCCcccc
Confidence 5788999999864 68999999 77 899999999987543 5899999987654
No 25
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.32 E-value=2e-13 Score=122.39 Aligned_cols=61 Identities=36% Similarity=0.942 Sum_probs=54.4
Q ss_pred cCCCCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 133 TPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 133 ~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
.++....||+|++++++++.|||||.|++|||+.|||++...++.++.|+|+.|...++..
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 4567889999999998889999999999999999999999887777899999999876643
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.30 E-value=1.5e-13 Score=107.66 Aligned_cols=57 Identities=32% Similarity=0.963 Sum_probs=50.2
Q ss_pred CCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (216)
....+|+|+++++.++.||+||.|.+|||..|+|++..+++..+.|+|+.|......
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 62 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhcc
Confidence 467899999999888999999999999999999999887766789999999987643
No 27
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.30 E-value=1.9e-13 Score=88.09 Aligned_cols=49 Identities=27% Similarity=0.858 Sum_probs=41.1
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--cc-ceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
....||+|++++ +++||+||. |. +|||+.|||++..+. ..|+|+.|..+
T Consensus 7 ~e~~yC~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~---~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPK---GKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHCC
T ss_pred CCCcEEECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCC---CCEECcCccCc
Confidence 568899999986 368999999 77 899999999987654 58999999764
No 28
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.27 E-value=8e-13 Score=92.16 Aligned_cols=51 Identities=29% Similarity=0.894 Sum_probs=43.0
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--cc-ceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
....||+|+++++ ++||+||. |. +|||+.||+++..+. ..|+|+.|.....
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~---g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCC---SSCCCTTTCCCCS
T ss_pred CCCcEEECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCC---CCEECcCccCcCC
Confidence 5788999999874 68999999 76 899999999987543 5899999987654
No 29
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.27 E-value=3.5e-13 Score=87.64 Aligned_cols=50 Identities=30% Similarity=0.848 Sum_probs=40.9
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--cc-ceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
...+||+|+++.+ ++||+||. |. +|||+.||+++..+ ...|+|+.|..++
T Consensus 9 ~e~~yC~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p---~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 9 NEPTYCLCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKP---KGKWYCPKCRGDN 61 (62)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCC---SSCCCCHHHHTCC
T ss_pred CCCcEEECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCC---CCCEECcCcccCC
Confidence 4678999999854 58999999 54 99999999998754 2689999997653
No 30
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.27 E-value=8.1e-13 Score=103.91 Aligned_cols=55 Identities=31% Similarity=0.789 Sum_probs=45.5
Q ss_pred cceE-EeCCCCCCCCc---eEeCccccceecCcCCCCChhhhcCC------CeEEcccccccccc
Q 027964 138 AVYC-KCEMPYNPDDL---MVQCEGCKDWFHPSCMGMTIEEAKKL------DHFLCSDCSSDVDA 192 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~---~i~C~~C~~w~H~~Cv~~~~~~~~~~------~~~~C~~C~~~~~~ 192 (216)
+.+| +|+++|++++. ||+||.|+.|||+.|+|++.+.++.+ ..|+|+.|....+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4678 89999987764 99999999999999999998654333 27999999987663
No 31
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-13 Score=89.85 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=42.9
Q ss_pred CCcceEEeCCCCCCCCceEeCcccc---ceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
...+||+|+++. +++||+||.|+ +|||+.||+++..+ ...|+|+.|.....
T Consensus 4 ~~~~yC~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p---~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAP---KGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCSTTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCC---SSCCCCHHHHHHHH
T ss_pred CCCeEEEcCCCC--CCCEeEeCCCCCCccCCcccccccCcCC---CCCEECCCCCcccc
Confidence 568899999985 45999999974 99999999998753 36899999987654
No 32
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.24 E-value=6.2e-13 Score=85.98 Aligned_cols=49 Identities=31% Similarity=0.927 Sum_probs=40.3
Q ss_pred CCcceEEeCCCCCCCCceEeCcc--cc-ceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
....+|+|+++. ++.||+||. |. +|||+.|||++..+. ..|+|+.|..+
T Consensus 8 ~e~~~C~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~---g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYCLCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQE 59 (60)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHC-
T ss_pred CCCCEEECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCC---CCEECcCccCc
Confidence 468899999986 368999999 65 899999999987543 57999999764
No 33
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.23 E-value=9.6e-13 Score=89.04 Aligned_cols=54 Identities=24% Similarity=0.841 Sum_probs=44.4
Q ss_pred CCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
....+| +|+++++ ++.||+||.|+.|||..||+++...... ..|+|+.|..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEE-MQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSS-SCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCC-CCEEChhccCchh
Confidence 356679 9999874 5689999999999999999998765433 6899999987644
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=85.99 Aligned_cols=51 Identities=29% Similarity=0.799 Sum_probs=42.4
Q ss_pred CCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
...+.|+|+.+.+ ++.||+|+.|..|||..|++++.... ++.|+|+.|...
T Consensus 26 ~d~vrCiC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~--p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRCICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHI--PDTYLCERCQPR 76 (98)
T ss_dssp CCBCCCTTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSC--CSSBCCTTTSSS
T ss_pred CCCEEeECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCC--CCCEECCCCcCC
Confidence 3467899999875 67999999999999999999986543 358999999754
No 35
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=99.03 E-value=7.3e-11 Score=105.38 Aligned_cols=48 Identities=23% Similarity=0.623 Sum_probs=43.2
Q ss_pred CCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 146 PYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 146 ~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
+.+++..||+||.|++|||+.|||++...++.++.|+|+.|....+.-
T Consensus 51 ~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps 98 (528)
T 3pur_A 51 HKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHS 98 (528)
T ss_dssp TTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSC
T ss_pred CCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCCCc
Confidence 356889999999999999999999999988888999999999876655
No 36
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.75 E-value=4.6e-09 Score=81.40 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=38.7
Q ss_pred CCcceEEeCCCCCCCCceEeCccccceecCcCCCCChhhh---cCCCeEEcccccccc
Q 027964 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA---KKLDHFLCSDCSSDV 190 (216)
Q Consensus 136 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~---~~~~~~~C~~C~~~~ 190 (216)
....||.|+.+.+.+..|+||..|.+|||.+|++...... .....|.|..|....
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 4567999999999999999999999999999998654222 234689999998743
No 37
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.57 E-value=2.6e-08 Score=65.34 Aligned_cols=52 Identities=23% Similarity=0.580 Sum_probs=39.3
Q ss_pred CcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 137 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
...+| +|+.. +.|+.||.|..|||..|++++...... ..|+|+.|.......
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPS-GTWRCSSCLQATVQE 59 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCS-SCCCCHHHHHTCCCC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCC-CCeECccccCccccc
Confidence 34456 68763 579999999999999999976543322 589999998765544
No 38
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.55 E-value=1.1e-08 Score=63.60 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=35.4
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|++..+ ++.|+.||.|..|||..|++++...... ..|+|+.|...
T Consensus 5 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 6777653 5689999999999999999866443322 58999999754
No 39
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.52 E-value=4.9e-07 Score=72.79 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=32.2
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|+...+ ++.|+.||.|..+||+.|++++.........|+|+.|...
T Consensus 179 vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 179 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 6766543 5689999999999999999977654333238999999753
No 40
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.49 E-value=1.9e-08 Score=74.80 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=31.2
Q ss_pred ceEeCccccceecCcCCCCChhhh------cCCCeEEccccccccc
Q 027964 152 LMVQCEGCKDWFHPSCMGMTIEEA------KKLDHFLCSDCSSDVD 191 (216)
Q Consensus 152 ~~i~C~~C~~w~H~~Cv~~~~~~~------~~~~~~~C~~C~~~~~ 191 (216)
.||+||.|++|||..|++++.+.. .....|.|+.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 499999999999999999986421 1123699999987644
No 41
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=2.8e-08 Score=64.11 Aligned_cols=49 Identities=22% Similarity=0.702 Sum_probs=37.9
Q ss_pred CCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
....+| +|++. +.|+.||.|..|||..|++++...... ..|+|+.|...
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCC-CceECcccccc
Confidence 445677 58763 589999999999999999987543322 58999999864
No 42
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=4.3e-08 Score=62.12 Aligned_cols=47 Identities=19% Similarity=0.716 Sum_probs=35.9
Q ss_pred CcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 137 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
...+| +|+.. +.|+.||.|..|||..|++++...... ..|+|+.|..
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCC-CceEChhhhC
Confidence 34456 67764 489999999999999999976543322 5899999965
No 43
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.44 E-value=5.8e-08 Score=63.59 Aligned_cols=55 Identities=25% Similarity=0.617 Sum_probs=40.4
Q ss_pred ceE-EeCCCCC-CCCceEeCccccceecCcCCCCChhh--hcCCCeEEccccccccccc
Q 027964 139 VYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEE--AKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 139 ~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~--~~~~~~~~C~~C~~~~~~~ 193 (216)
..| +|+.... .++.|+.||.|..+||..|++++... ......|+|+.|......|
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 345 8887642 35799999999999999999986532 1112579999998765543
No 44
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.42 E-value=2.9e-08 Score=63.85 Aligned_cols=48 Identities=19% Similarity=0.704 Sum_probs=36.7
Q ss_pred ceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 139 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
.+| +|+.. +.|+.||.|..|||..|++++...... ..|+|+.|.....
T Consensus 6 ~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCC-SCCCCHHHHHHHH
T ss_pred CCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCC-CceEChhccChhh
Confidence 445 67663 589999999999999999976543322 5899999987654
No 45
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.41 E-value=2.7e-08 Score=66.14 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=38.6
Q ss_pred eEEeCCCC-CCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 140 YCKCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 140 ~C~C~~~~-~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
..+|+... ..++.||.||.|..|||..|++++..+ ...|+|+.|.....
T Consensus 19 C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP---~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 19 CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP---EGQWLCRHCLQSRA 68 (71)
T ss_dssp CSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCC---SSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCC---CCCcCCccCcCcCc
Confidence 33888765 346799999999999999999998522 15799999987644
No 46
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.41 E-value=8.2e-08 Score=63.66 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=36.2
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|++.. .++.|+.||.|..+||+.|++.+.......+.|+|+.|..+
T Consensus 23 ~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566654 35799999999999999999976554433348999999854
No 47
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=7.2e-08 Score=67.38 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=39.5
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
...| +|+...+ ...||.||.|..|||..|++++...... ..|+|+.|....
T Consensus 16 ~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~ 67 (92)
T 2e6r_A 16 SYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPR-GIWRCPKCILAE 67 (92)
T ss_dssp CCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred CCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCC-CCcCCccCcCcc
Confidence 3456 8888753 4689999999999999999976543322 589999998754
No 48
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.35 E-value=2.2e-07 Score=64.33 Aligned_cols=55 Identities=16% Similarity=0.579 Sum_probs=41.1
Q ss_pred cceE-EeCCCCCC-CCceEeCccccceecCcCCCCChhh---hcCCCeEEcccccccccc
Q 027964 138 AVYC-KCEMPYNP-DDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 138 ~~~C-~C~~~~~~-~~~~i~C~~C~~w~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~~~ 192 (216)
..+| +|+..... ++.|+.||.|...||..|++++... ......|+|+.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3355 88876543 4689999999999999999987542 112258999999987653
No 49
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.31 E-value=1.7e-07 Score=60.43 Aligned_cols=48 Identities=21% Similarity=0.687 Sum_probs=36.5
Q ss_pred CcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 137 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
...+| +|+. .+.|+.||.|..+||..|++++...... ..|+|+.|...
T Consensus 8 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCS-SCCCCTTTTTT
T ss_pred CCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCC-CccCChhhcCc
Confidence 44456 5765 3579999999999999999976543322 58999999865
No 50
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=3.2e-07 Score=61.86 Aligned_cols=46 Identities=15% Similarity=0.566 Sum_probs=35.9
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
+|++.. .++.|+.||.|..+||..|++++.........|+|+.|..
T Consensus 31 vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 677654 3679999999999999999997655433333799999974
No 51
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.26 E-value=9.4e-07 Score=60.85 Aligned_cols=61 Identities=25% Similarity=0.506 Sum_probs=44.0
Q ss_pred CCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccccccccCCCCCC
Q 027964 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNTFSV 201 (216)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~ 201 (216)
....+| +|+.. +.++.||.|...||..|+.++...... ..|+|+.|......|...+.+++
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~~ke~~~~l~~ 84 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDLKEEDVDLQA 84 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCS-SSCCCCSCCCCCSSCCSSTTSCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcC-CCcCCccccCCCccchhhccccc
Confidence 345566 67654 469999999999999999776544322 57999999988776644444443
No 52
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.24 E-value=6.6e-08 Score=67.01 Aligned_cols=52 Identities=19% Similarity=0.454 Sum_probs=40.4
Q ss_pred ceEEeCCCC-CCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 139 VYCKCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 139 ~~C~C~~~~-~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
..++|+... ..++.||.||.|..|||..|++++..+ ...|+|+.|......+
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP---~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP---EGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCC---SSCCCCHHHHHHTTSC
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccC---CCceECccccCccchh
Confidence 344888764 335699999999999999999998522 1589999999876544
No 53
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.19 E-value=5.3e-07 Score=60.75 Aligned_cols=46 Identities=22% Similarity=0.590 Sum_probs=35.0
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
+|++..+ .+.|+.||.|..+||..|++.+.......+.|+|+.|..
T Consensus 31 vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred ccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5666543 468999999999999999997765443434599999975
No 54
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.05 E-value=3.1e-06 Score=66.35 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=36.5
Q ss_pred ceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 139 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
.+| +|+.+ +.++.||.|..+||..|++++...... ..|+|+.|.....
T Consensus 5 ~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~-~~W~C~~C~~~~~ 53 (184)
T 3o36_A 5 DWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPS-GEWICTFCRDLSK 53 (184)
T ss_dssp SSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CccccCCCC----CeeeecCCCCcccCccccCCCCCCCCC-CCEECccccCccc
Confidence 345 67653 469999999999999999876554322 4799999997654
No 55
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.05 E-value=8.7e-07 Score=57.93 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=33.6
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|+. ++.|+.||.|..+||..|++.+...... ..|+|+.|...
T Consensus 17 vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 59 (66)
T 2lri_C 17 VCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPG-TGLRCRSCSGD 59 (66)
T ss_dssp TTSC----CTTCEECSSSCCEECHHHHCTTTCCCCS-SSCCCTTTTTC
T ss_pred CCCC----CCeEEECCCCCCceecccCCCccCcCCC-CCEECccccCC
Confidence 6764 3469999999999999999877544322 47999999754
No 56
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.02 E-value=2.3e-06 Score=68.44 Aligned_cols=49 Identities=22% Similarity=0.536 Sum_probs=37.2
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
..+| +|+.+ +.++.||.|..+||..|++++...... ..|+|+.|.....
T Consensus 7 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 7 EDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPS-GDWICTFCRDIGK 56 (207)
T ss_dssp CSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCC-CCEEeCceeCccc
Confidence 3456 67654 469999999999999999876554322 4799999997654
No 57
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.92 E-value=1.9e-06 Score=62.53 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=37.7
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (216)
+|++.. .++.|+.||.|..+||..|++.+...... ..|+|+.|......
T Consensus 63 ~C~~~~-~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 63 LCGTSE-NDDQLLFCDDCDRGYHMYCLNPPVAEPPE-GSWSCHLCWELLKE 111 (114)
T ss_dssp TTTCCT-TTTTEEECSSSCCEEETTTSSSCCSSCCS-SCCCCHHHHHHHHH
T ss_pred cccccC-CCCceEEcCCCCccccccccCCCccCCCC-CCeECccccchhhc
Confidence 677654 35789999999999999999976543322 47999999876543
No 58
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.91 E-value=4e-06 Score=60.53 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=36.2
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
+|+.....++.|+.||.|..+||..|++.+...... ..|+|+.|..
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~-~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS-SCCCCTTTSC
T ss_pred cccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC-CCeECCCCCC
Confidence 677665556789999999999999999876544323 4799999975
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.90 E-value=3.3e-06 Score=60.37 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=33.6
Q ss_pred CcceEEeCCCCCCCCceEeCc--cccceecCcCCCCChhhhcCCCeEEccccc
Q 027964 137 VAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187 (216)
Q Consensus 137 ~~~~C~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 187 (216)
...+|.+.+ .++.||.|| .|..|||..|+++...+. ..|+|+.|.
T Consensus 14 ~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~---g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPPY---GKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCCS---SCCCCGGGB
T ss_pred CCCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCCC---CCEECCCCC
Confidence 456785444 256899999 899999999999765432 478888775
No 60
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.71 E-value=6e-06 Score=59.92 Aligned_cols=42 Identities=21% Similarity=0.565 Sum_probs=31.6
Q ss_pred CCCceEeCccccceecCcCCCCChhh---hcCCCeEEcccccccc
Q 027964 149 PDDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDV 190 (216)
Q Consensus 149 ~~~~~i~C~~C~~w~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~ 190 (216)
.+..|++|+.|+.|||..|+++..+. .+.++.|.|+.|....
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 34579999999999999999987543 2335679999998764
No 61
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.66 E-value=1.2e-05 Score=57.88 Aligned_cols=49 Identities=20% Similarity=0.665 Sum_probs=37.4
Q ss_pred eE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 140 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
.| +|++..+ +..|+.|+.|..+||..|++.+...... ..|+|+.|....
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPT-NGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCS-SCCCCHHHHCCS
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCC-CCcCCcCCcCcC
Confidence 34 5777654 4689999999999999999976544322 589999997653
No 62
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.45 E-value=7.4e-05 Score=58.76 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=35.1
Q ss_pred eE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 140 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
+| +|+.. +.++.||.|...||..|+..+...... ..|+|+.|.....
T Consensus 4 ~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 4 ICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 51 (189)
T ss_dssp CBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCC-TTCCTTTTSCSCC
T ss_pred cCccCCCC----CceeECCCCCchhccccCCCCcccCCC-CCCCCcCccCCCC
Confidence 35 56543 468999999999999999766543322 4799999997744
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=52.16 Aligned_cols=48 Identities=21% Similarity=0.641 Sum_probs=35.7
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 187 (216)
...| +|+...+ ...||.|+.|...||..|++++...... ..|.|+.|.
T Consensus 7 ~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~-~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKR-AGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTS-TTCCCTTTC
T ss_pred CCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccc-cCccCCcCC
Confidence 3445 6777643 3568999999999999999998754322 579988875
No 64
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.00 E-value=0.0001 Score=53.08 Aligned_cols=38 Identities=26% Similarity=0.656 Sum_probs=29.6
Q ss_pred CCceEeCccccceecCcCCCCChhhhc--CCCeEEccccc
Q 027964 150 DDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCS 187 (216)
Q Consensus 150 ~~~~i~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~ 187 (216)
.+.||.|+.|...||..|+++.....+ ....|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 468999999999999999998643221 23579999885
No 65
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.92 E-value=0.00028 Score=50.85 Aligned_cols=38 Identities=26% Similarity=0.706 Sum_probs=29.0
Q ss_pred CCceEeCccccceecCcCCCCChhhhc--CCCeEEccccc
Q 027964 150 DDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCS 187 (216)
Q Consensus 150 ~~~~i~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~ 187 (216)
.+.||.|+.|...||..|++++..... .-..|.|+.|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468999999999999999999854211 12479888773
No 66
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.33 E-value=0.00025 Score=53.00 Aligned_cols=51 Identities=18% Similarity=0.524 Sum_probs=37.1
Q ss_pred CCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhh--h----cCCCeEEccccccc
Q 027964 135 DRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEE--A----KKLDHFLCSDCSSD 189 (216)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~--~----~~~~~~~C~~C~~~ 189 (216)
+....+| +|+. ++.++.||.|-.-||..|+.++..+ . ...+.|.|+.|...
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4455677 5654 5678999999999999999865421 1 12368999999854
No 67
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=95.61 E-value=0.00093 Score=49.10 Aligned_cols=51 Identities=18% Similarity=0.530 Sum_probs=36.8
Q ss_pred CCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCCh-----hhh-cCCCeEEccccccc
Q 027964 135 DRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI-----EEA-KKLDHFLCSDCSSD 189 (216)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~-----~~~-~~~~~~~C~~C~~~ 189 (216)
+....+| +|+. ++.++.||.|-.-||..|+..+. ... ...+.|.|..|..+
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4455667 6654 46789999999999999998541 122 12368999999765
No 68
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=90.73 E-value=0.22 Score=32.63 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=26.4
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
..|.+||.|++...| ..+|+|.|.++...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 578999999999998 89999999999874
No 69
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=90.62 E-value=0.36 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.5
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
.+++||.|++...| ..+|.|.|+++....
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecCC
Confidence 46789999999998 899999999997753
No 70
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=87.87 E-value=0.73 Score=29.38 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=25.5
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
.+++||.|+....| ..+|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999999976 89999999999985
No 71
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.37 E-value=0.93 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.6
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
.-.+.+||.|+....| ..+|+|.|.++...
T Consensus 7 ~~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred CcccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 4578999999999998 89999999999864
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.12 E-value=0.25 Score=32.87 Aligned_cols=53 Identities=19% Similarity=0.500 Sum_probs=34.4
Q ss_pred cceE-EeCCCCCCCCceEe---CccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQ---CEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~---C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
...| ||...+..++.++. |.+...+||..|+..=.... ....|+.|.......
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeecC
Confidence 3445 88776655555553 23345999999995433322 246899999987655
No 73
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=86.07 E-value=0.65 Score=29.77 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.1
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEK 47 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~ 47 (216)
..|.+||.|++...| ..+|+|.|++
T Consensus 14 ~~~~~geDVL~rw~D--G~fYLGtIVd 38 (69)
T 2xk0_A 14 VTYALQEDVFIKCND--GRFYLGTIID 38 (69)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEEEE
T ss_pred cccccCCeEEEEecC--CCEEEEEEEe
Confidence 468899999999988 8999999955
No 74
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=84.74 E-value=0.6 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.3
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~ 49 (216)
...|.+||.|+-..+. +..+|-|+|.+|-
T Consensus 7 ~~~~~vgd~VmaRW~G-d~~yYparI~Si~ 35 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPG-SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSSCSSCEEEEECTT-SSCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEcCC-CccceEEEEEEec
Confidence 3578999999999954 6899999999998
No 75
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=84.72 E-value=0.23 Score=29.77 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=29.5
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|...+..+...+.-..|+..||..|+..-... ...||.|...
T Consensus 10 IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 10 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp TTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred cCCccccCCCceEECCCCCCcccHHHHHHHHHc-----CCcCcCCCCE
Confidence 777766555555556679999999998533221 3479999765
No 76
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.31 E-value=0.44 Score=29.88 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.0
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
+..+.+||.|+....| ..+|+|.|.++...
T Consensus 5 ~~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred ccceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 4578999999999988 89999999998754
No 77
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=83.86 E-value=0.074 Score=40.22 Aligned_cols=54 Identities=24% Similarity=0.500 Sum_probs=39.7
Q ss_pred cCCCCcceE-EeCCCCCCCCceEeCc--cccceecCcCCCCC-----hhhhcCCCeEEcccccccc
Q 027964 133 TPDRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMT-----IEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 133 ~p~~~~~~C-~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~-----~~~~~~~~~~~C~~C~~~~ 190 (216)
.++....|| +|+. ++.++.|+ .|..-|...||... .......+.|.|-.|..+.
T Consensus 74 DeDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 74 DDDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp CTTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CCCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 345567788 6765 56899999 89999999999532 1222345899999998764
No 78
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=82.56 E-value=1.1 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=25.4
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~ 49 (216)
..|.+||.|+-.... +..+|-|+|.+|-
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEec
Confidence 578999999999984 6899999999998
No 79
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=82.33 E-value=0.1 Score=45.03 Aligned_cols=53 Identities=17% Similarity=0.564 Sum_probs=39.1
Q ss_pred CCCCcceE-EeCCCCCCCCceEeCc--cccceecCcCCCCCh-----hhhcCCCeEEcccccccc
Q 027964 134 PDRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTI-----EEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 134 p~~~~~~C-~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~~-----~~~~~~~~~~C~~C~~~~ 190 (216)
.+....|| +|+. ++.++.|+ .|..-|...|+.... ......+.|.|-.|..+.
T Consensus 89 ~DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 89 DDGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 34567788 6665 46889999 999999999995432 222334789999999775
No 80
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=82.24 E-value=0.68 Score=32.16 Aligned_cols=37 Identities=16% Similarity=0.599 Sum_probs=23.5
Q ss_pred CCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccc
Q 027964 147 YNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSD 185 (216)
Q Consensus 147 ~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~ 185 (216)
..+...+|||+.|.+|=-.. .++. .....++.|+|..
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP-~~~~-~~~~~pd~W~C~m 58 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIP-ASVV-GSIDESSRWICMN 58 (100)
T ss_dssp CSSSSEEEECTTTCCEEEEC-HHHH-TTSTTSSCCCGGG
T ss_pred CCCCCeEEeeCCCCccccCC-hhHc-cccCCCCCceeCC
Confidence 34577899999999997653 1110 0111357899965
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.12 E-value=0.071 Score=35.81 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=32.0
Q ss_pred eE-EeCCCCCCCCceEeCccccceecCcCCCCC---hhh--------hcCCCeEEcccccc
Q 027964 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMT---IEE--------AKKLDHFLCSDCSS 188 (216)
Q Consensus 140 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~---~~~--------~~~~~~~~C~~C~~ 188 (216)
.| +|... +.+.++.|..|.+-||..|+... ..+ +..-.-|.|..|..
T Consensus 17 ~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVW--TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCccccc--cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45 66654 36788999999999999999432 111 11123699999944
No 82
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=80.96 E-value=1.4 Score=28.24 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=31.6
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
...| +|...+......+. -.|+..||..|+..-... ...|+.|.......
T Consensus 15 ~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEE-eCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCc
Confidence 3445 88777654333222 258999999999643221 24899999876654
No 83
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.89 E-value=0.69 Score=29.51 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=30.9
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
...| +|...+......+.. .|+..||..|+..-... ...||.|.....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV-----RKVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH-----CSBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc-----CCcCCCcCcccc
Confidence 3445 887776544443332 48999999998643322 238999987654
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.07 E-value=0.34 Score=33.86 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=26.9
Q ss_pred EeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 154 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
+.-..|+..||..|+..-...........||.|....+.+
T Consensus 56 ~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred eecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3345799999999997433221112357999999887755
No 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=78.54 E-value=0.38 Score=28.76 Aligned_cols=43 Identities=19% Similarity=0.481 Sum_probs=29.1
Q ss_pred EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccc
Q 027964 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (216)
Q Consensus 142 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (216)
+|...+......+....|+..||..|+..-... ...||.|...
T Consensus 10 IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~ 52 (55)
T 2ecm_A 10 ICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-----GYRCPLCSGP 52 (55)
T ss_dssp TTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-----TCCCTTSCCS
T ss_pred ccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-----CCcCCCCCCc
Confidence 676666444444555679999999999643332 2579999765
No 86
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.00 E-value=1.8 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=35.9
Q ss_pred CcceEEeCCCCCCC-----CceEeCccc-cceecCcCCCCChhhhcCCCeEEcccccc
Q 027964 137 VAVYCKCEMPYNPD-----DLMVQCEGC-KDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (216)
Q Consensus 137 ~~~~C~C~~~~~~~-----~~~i~C~~C-~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (216)
.+..|+|....+.. -.+|.|..| ..=-|..|..+... .+.|.|..|..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~~----~~~weC~~C~~ 78 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPN----SKKWECNECLP 78 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCTT----CSCCCCTTTSC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcCC----CCCEECCcCcc
Confidence 35568886654432 377999999 58999999998642 36899999983
No 87
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=75.30 E-value=2.3 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=33.2
Q ss_pred ccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEe
Q 027964 24 RPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWY 63 (216)
Q Consensus 24 ~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wf 63 (216)
.+||.+.|.....+.+...|.|+++... +|..-..|+|+
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~ 45 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWL 45 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEET
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEec
Confidence 6899999999887889999999999884 46667788995
No 88
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=74.20 E-value=7.9 Score=24.09 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEEEEeecccccCCcccccCCCCeeeeeCccceeecceeeeeeEEEe
Q 027964 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (216)
Q Consensus 58 v~v~Wfyrp~d~~~~~~~~~~~~ELF~s~~~d~~~~~~I~gkc~V~~ 104 (216)
|.|.=+-|..|+.-......++.||.+...++-.++..|+|++.++.
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t 59 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 59 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEE
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEe
Confidence 66666778888854444446899999999999999999999999985
No 89
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=73.37 E-value=3 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=24.7
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
.+++||-|+-..+| ..+|-|+|.+|-.+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD 33 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC
Confidence 57899999999955 89999999999775
No 90
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=71.63 E-value=11 Score=23.84 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=37.1
Q ss_pred EEEEEeecccccCCcccccCCCCeeeeeCccceeecceeeeeeEEEe
Q 027964 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (216)
Q Consensus 58 v~v~Wfyrp~d~~~~~~~~~~~~ELF~s~~~d~~~~~~I~gkc~V~~ 104 (216)
|.|.=+-|..|+.--...-.+..||.+....+-.++..|+||+.++.
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t 63 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 63 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEe
Confidence 56666778888764433346899999999888889999999999985
No 91
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=71.15 E-value=11 Score=24.32 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=37.0
Q ss_pred EEEEEeecccccCCcccccCCCCeeeeeCccceeecceeeeeeEEEe
Q 027964 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (216)
Q Consensus 58 v~v~Wfyrp~d~~~~~~~~~~~~ELF~s~~~d~~~~~~I~gkc~V~~ 104 (216)
|.|.=+-|..|+.-......+..||.+...++-.++..|+|++.++.
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t 67 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQT 67 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEe
Confidence 55566677777754333346899999999999999999999999986
No 92
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=69.86 E-value=3.1 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCceEeCc--cccceecCcCCCCChhhhcCCCeEEccc
Q 027964 149 PDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCSD 185 (216)
Q Consensus 149 ~~~~~i~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~~ 185 (216)
....+|||+ .|.+|=-..= ++.. ...++.|+|..
T Consensus 14 ~~~~WVQCd~p~C~KWR~LP~-~~~~--~~lpd~W~C~m 49 (69)
T 2e61_A 14 QCLVWVQCSFPNCGKWRRLCG-NIDP--SVLPDNWSCDQ 49 (69)
T ss_dssp CCCCEEECSSTTTCCEEECCS-SCCT--TTSCTTCCGGG
T ss_pred CCCeEEEeCccccCcccCCcc-cccc--ccCCCcCEeCC
Confidence 456899999 9999976522 1211 12457899963
No 93
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=67.09 E-value=2 Score=28.87 Aligned_cols=33 Identities=27% Similarity=0.619 Sum_probs=24.2
Q ss_pred CCCcceE-EeCCCCCCCCceEeCc--cccceecCcCCC
Q 027964 135 DRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMG 169 (216)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~ 169 (216)
+++.+.| +|++. ..+--|||. .|...||..|..
T Consensus 14 ~R~~l~C~iC~~~--~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 14 ARWKLTCYLCKQK--GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCBTTTTBC--CSSCEEECSCTTTCCEEEHHHHH
T ss_pred HHhcCCCcCCCCC--CCcEeEecCCCCCCCcCcHHHHH
Confidence 4555666 88653 136789998 599999999973
No 94
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=67.03 E-value=4.8 Score=26.96 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=25.2
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
...+.+||-|+-..+| ..+|-|+|.+|-.+
T Consensus 19 ~~~f~vGd~VlArW~D--~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 19 SSEFQINEQVLACWSD--CRFYPAKVTAVNKD 48 (85)
T ss_dssp --CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred CcccccCCEEEEEeCC--CCEeeEEEEEECCC
Confidence 3578999999999955 89999999999775
No 95
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=64.12 E-value=3.5 Score=30.82 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=32.2
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCC---CCEEEEEEEeecc
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYYRP 66 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~---g~~~v~v~Wfyrp 66 (216)
+..+.+||.|...-.. -+.|-|+|........ ..-.+.|+||-..
T Consensus 14 g~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~ 61 (154)
T 3llr_A 14 GRGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG 61 (154)
T ss_dssp SCCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred CCCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCCC
Confidence 4589999999999876 7999999998653211 1235667776443
No 96
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=63.65 E-value=4 Score=30.24 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=28.0
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcC--CCCEEEEEEEee
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH--RNNVKVRVRWYY 64 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~--~g~~~v~v~Wfy 64 (216)
..|.+||.|...-.. -+.|-|+|....... .....+.|.||-
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~~~~~V~FfG 64 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPTNKLPIFFFG 64 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCTTCEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCCCEEEEEecC
Confidence 368999999999976 799999997654321 111235565553
No 97
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=63.36 E-value=4.6 Score=29.21 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEEeEEEEcC-----CC-CEEEEEEEeec
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-----RN-NVKVRVRWYYR 65 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~-----~g-~~~v~v~Wfyr 65 (216)
++..|.+||.|...-.. -+.|-|+|...-... .+ ...+.|+||-.
T Consensus 19 ~~~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 19 TSSDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp SSCCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred cCCCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 35689999999999886 799999998753221 11 24566777653
No 98
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=61.61 E-value=5.6 Score=26.63 Aligned_cols=56 Identities=14% Similarity=0.447 Sum_probs=37.9
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhc--CCCeEEccccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~~~~~~~ 193 (216)
...| .|+.++..-..-.-|-.|+..|...|.......+. ....-+|..|.......
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 4456 77777765555678999999999999865322111 11368999999875544
No 99
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=61.29 E-value=8.2 Score=23.41 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=33.1
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeeccc
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPE 67 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~ 67 (216)
.+.+||.|.|..+. -.-+.|.|.++.. ..+.+.+.+..|-|.-
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~-~k~~v~V~v~~~Gr~t 46 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINP-ERGKVKVMVTIFGRET 46 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEET-TTTEEEEEEESSSSEE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcC-CCCEEEEEEEeCCCEE
Confidence 46789999999986 5678999999864 3456778887776653
No 100
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.51 E-value=1.7 Score=29.41 Aligned_cols=61 Identities=18% Similarity=0.446 Sum_probs=40.6
Q ss_pred cCCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhc-CCCeEEccccccccccc
Q 027964 133 TPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK-KLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 133 ~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~-~~~~~~C~~C~~~~~~~ 193 (216)
.|+.....| .|+.++.....-..|-.|+..|...|.......+. ....-+|..|.......
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA 77 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred cccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence 344555667 78887765455578999999999999875432111 11368999998765433
No 101
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=58.67 E-value=1.2 Score=29.91 Aligned_cols=48 Identities=21% Similarity=0.586 Sum_probs=30.7
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
...| +|...+..+...+.- .|+..||..|+..-... ...||.|.....
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK-----SGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT-----TCBCTTTCCBSS
T ss_pred CCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc-----CCcCcCcCccCC
Confidence 3456 887766544433333 49999999998543221 248999987644
No 102
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.87 E-value=3.4 Score=26.83 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=30.7
Q ss_pred ceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 139 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
..| +|.....++ +.|..|..-||..|+.-=... . ..=.||.|...-.
T Consensus 16 ~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~--~-~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQS--N-AEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTT--C-SSCCCTTTCSCCC
T ss_pred CcCcchhhHcccC---CccCCCCchhhHHHHHHHHHh--c-CCCCCCCCcCcCC
Confidence 345 887766432 578899999999999521110 0 1137999996644
No 103
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.57 E-value=2.8 Score=30.62 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=40.2
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
....| +|..+.. .+..-..|..|+.-+...|-+...... .-..|+|..|......+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~-~~~~W~C~vC~k~rel~ 111 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR-PHPVWLCKICLEQREVW 111 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS-SSCCEEEHHHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCC-CccceechhhHHHHHHH
Confidence 34556 8888873 334558999999999999987553211 22479999999987665
No 104
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=56.24 E-value=6.3 Score=26.71 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=22.3
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKI 48 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i 48 (216)
.+.+||.|...-.. -+.|-|+|.++
T Consensus 5 ~f~~GdlVwaK~~g--~p~WPa~V~~~ 29 (94)
T 3qby_A 5 AFKPGDLVFAKMKG--YPHWPARIDDI 29 (94)
T ss_dssp CCCTTCEEEECCTT--SCCEEEEECCC
T ss_pred cCccCCEEEEecCC--CCCCCEEEeec
Confidence 68899999999976 79999999875
No 105
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.46 E-value=3.7 Score=27.08 Aligned_cols=59 Identities=19% Similarity=0.453 Sum_probs=38.4
Q ss_pred ccCCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhh-cCCCeEEcccccccc
Q 027964 132 FTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA-KKLDHFLCSDCSSDV 190 (216)
Q Consensus 132 f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~-~~~~~~~C~~C~~~~ 190 (216)
+.|+.....| .|+.++.....-..|-.|+..|...|.......+ .....-+|..|....
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 4456666677 7888776444557799999999999976432111 122468999998754
No 106
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.14 E-value=5.4 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=31.3
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeec
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYR 65 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyr 65 (216)
..+.+||.|.|..++ -.-..|.|+++.. ..+.+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~---e~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDG---NKITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBT---TEEEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeC---CEEEEEEEecCC
Confidence 468899999999997 6889999999864 256677765555
No 107
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=54.99 E-value=3.1 Score=29.20 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=29.4
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEc--CCCCEEEEEEEe
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD--HRNNVKVRVRWY 63 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~--~~g~~~v~v~Wf 63 (216)
+..+.+||.|...-.. -+.|-|+|.++-+. +.....+.|+||
T Consensus 17 ~~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp SSSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred cCCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 4578999999998876 79999999865322 112234666666
No 108
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.19 E-value=4.9 Score=23.61 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=21.2
Q ss_pred EeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 154 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
.+|..|+--|... .|-+....+.++.|.|+.|....
T Consensus 5 y~C~vCGyvyd~~-~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 5 YVCNVCGYEYDPA-EHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp EEETTTCCEECGG-GGTTCCGGGSCTTCBCTTTCCBG
T ss_pred EECCCCCeEEeCC-cCCCcchhhCCCCCcCcCCCCcH
Confidence 4677887666532 12211122345789999998753
No 109
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=54.16 E-value=16 Score=24.76 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=23.9
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
.|.+|+.|++..+ +..|-|+|+++....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 589999999999754
No 110
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=53.94 E-value=3.3 Score=25.74 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=30.3
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (216)
...| +|...+..+.. +..-.|+..||..|+..-... ...||.|......
T Consensus 14 ~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLIT-----NKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHH-----CSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHc-----CCCCcCcCccccC
Confidence 3345 77766643333 333359999999998643322 2359999876543
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.69 E-value=9.4 Score=25.13 Aligned_cols=61 Identities=18% Similarity=0.528 Sum_probs=40.7
Q ss_pred cccCCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhc---------CCCeEEccccccccc
Q 027964 131 GFTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK---------KLDHFLCSDCSSDVD 191 (216)
Q Consensus 131 ~f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~---------~~~~~~C~~C~~~~~ 191 (216)
.+.|+.....| .|+.++..-..---|-.|+..|...|.......+. ....-+|..|.....
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHh
Confidence 45566777777 78888755455577999999999999753211110 123679999987543
No 112
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.42 E-value=1.6 Score=27.89 Aligned_cols=48 Identities=19% Similarity=0.565 Sum_probs=30.8
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
...| +|...+.... .+..-.|+..||..|+..-... ...||.|.....
T Consensus 23 ~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKA-----NRTCPICRADSG 71 (75)
T ss_dssp CCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHc-----CCcCcCcCCcCC
Confidence 4456 8877665333 3344459999999998643322 247999986543
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.06 E-value=5 Score=28.78 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=38.8
Q ss_pred cccCCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhh-cCCCeEEccccccc
Q 027964 131 GFTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA-KKLDHFLCSDCSSD 189 (216)
Q Consensus 131 ~f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~-~~~~~~~C~~C~~~ 189 (216)
.+.|+.....| .|+.++.....-..|-.|+..|...|.......+ .....-+|..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~ 122 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 122 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHH
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHH
Confidence 34566666677 7888776555557899999999999976432111 12246788888653
No 114
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=51.96 E-value=15 Score=25.41 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.6
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEcC-------CCCEEEEEEEee
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-------RNNVKVRVRWYY 64 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~-------~g~~~v~v~Wfy 64 (216)
+..+.+||.|...-.. -+.|-|+|..-.... .+...+.|++|-
T Consensus 3 ~~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 3 DDRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp SCCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CCcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 3578999999998886 799999997654321 112456776664
No 115
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=51.24 E-value=4 Score=30.24 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=30.7
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCC---CCEEEEEEEee
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYY 64 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~---g~~~v~v~Wfy 64 (216)
+..+.+||.|...-.. -+.|-|+|.+...... ..-.+.|.||-
T Consensus 9 ~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 4589999999998876 7999999987544211 12356677764
No 116
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=49.70 E-value=19 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=28.5
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcC-CCCEEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRV 60 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~-~g~~~v~v 60 (216)
..|.+|+.|++...+ ...|-|+|+++.... ++.....|
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~~~~~~~YyV 49 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVNDQEGREEFYV 49 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEETTTTEEEEEE
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEeccCCCceEEEE
Confidence 468999999999874 589999999998753 44433333
No 117
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.41 E-value=3.6 Score=26.75 Aligned_cols=53 Identities=15% Similarity=0.377 Sum_probs=33.6
Q ss_pred cceE-EeCCCCCCCCc-eEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 138 AVYC-KCEMPYNPDDL-MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~-~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
...| +|...+..... .+.- .|+..||..|+..-.... .....|+.|.......
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccch
Confidence 3456 78777654332 3332 699999999986543321 1357999999876543
No 118
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=47.82 E-value=9.9 Score=22.28 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=23.1
Q ss_pred CcceE-EeCCCCCCCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- .-.+|..|+.-.|..|+..
T Consensus 13 ~pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL---NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC---SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc---cCCEeCCCCCeEChhHHhh
Confidence 35667 6666432 4679999999999999864
No 119
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.73 E-value=16 Score=23.56 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=24.0
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
..+++||.|+-...| ...|-|+|.+|-.
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 368999999999874 7899999999853
No 120
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=46.71 E-value=16 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
..+++||.++..-.. +...|=|+|++|..
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 468999999988753 37899999999885
No 121
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=46.46 E-value=37 Score=20.43 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
.+++||.++..-.. ++..|=|+|.++..
T Consensus 3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE-DGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTT-TSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 47899998888653 36899999999843
No 122
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=45.40 E-value=7.7 Score=26.89 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=24.8
Q ss_pred CCCeEEccCCeEEEccCCCCCCCeEEEEeEE
Q 027964 18 GTNKVVRPGDCVLMRPADSDKPPYVARVEKI 48 (216)
Q Consensus 18 ~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i 48 (216)
+.|..+.+||.|...-.. -+.|-|+|.+.
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~ 32 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNP 32 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCCh
Confidence 456688999999999887 79999999875
No 123
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=45.05 E-value=17 Score=23.26 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=22.1
Q ss_pred EeCccccceecCcCCCCCh-------hhhcCCCeEEccccccccccc
Q 027964 154 VQCEGCKDWFHPSCMGMTI-------EEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~-------~~~~~~~~~~C~~C~~~~~~~ 193 (216)
-+|..|+-.|...= |-+. ...+.++.|.|+.|.......
T Consensus 8 y~C~vCGyiYd~~~-Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F 53 (70)
T 1dx8_A 8 YECEACGYIYEPEK-GDKFAGIPPGTPFVDLSDSFMCPACRSPKNQF 53 (70)
T ss_dssp EEETTTCCEECTTT-CCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGE
T ss_pred EEeCCCCEEEcCCC-CCcccCcCCCCchhhCCCCCcCCCCCCCHHHc
Confidence 56777775554321 1111 112345789999999865444
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.45 E-value=0.96 Score=29.69 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=23.5
Q ss_pred eEeCccccceecCcCCCCChhhhcCCCeEEcccccccccc
Q 027964 153 MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 153 ~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (216)
.+.-..|+..||..|+..=... .-.||.|......
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQ-----NNRCPLCQQDWVV 76 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTT-----CCBCTTTCCBCCE
T ss_pred EEEeCCCCCccChHHHHHHHHh-----CCCCCCcCCCcch
Confidence 3444479999999998632221 2389999987543
No 125
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=44.22 E-value=40 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.1
Q ss_pred eEEccCCeEEEccCCC--CCCCeEEEEeEEEEcCC
Q 027964 21 KVVRPGDCVLMRPADS--DKPPYVARVEKIEADHR 53 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~I~~I~~i~~~~~ 53 (216)
..|.+|+-|++.-.++ +...|=|+|+++....+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~ 52 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKD 52 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccC
Confidence 3688999999987553 34579999999976443
No 126
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=43.78 E-value=11 Score=22.81 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=21.2
Q ss_pred EeCccccceecCcCCCCCh-------hhhcCCCeEEccccccccc
Q 027964 154 VQCEGCKDWFHPSCMGMTI-------EEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~-------~~~~~~~~~~C~~C~~~~~ 191 (216)
.+|..|+--|... .|-+. ...+.++.|.|+.|.....
T Consensus 4 y~C~vCGyvYd~~-~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 4 YTCTVCGYIYDPE-DGDPDDGVNPGTDFKDIPDDWVCPLCGVGKD 47 (54)
T ss_dssp EEETTTCCEECTT-TCBGGGTBCTTCCGGGSCTTCBCTTTCCBGG
T ss_pred eECCCCCeEECCC-cCCcccCcCCCCChhHCCCCCcCcCCCCcHH
Confidence 3567776555543 22211 1123467899999987543
No 127
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=43.71 E-value=41 Score=23.10 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.0
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRV 60 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v 60 (216)
..|.+|+.|++..+ ...|-|+|+++... ++.....|
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~-~~~~~Y~V 56 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK-DKQVKYFI 56 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE-TTEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc-CCCcEEEE
Confidence 36889999999884 58999999999974 34333333
No 128
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=42.67 E-value=27 Score=23.67 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=23.7
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
.|.+|+.|++..+ +..+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 5889999999963 589999999999753
No 129
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=41.94 E-value=5.4 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 157 EGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 157 ~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
..|+..||..|+..=... .-.||.|.....
T Consensus 82 ~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT-----RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------
T ss_pred CCcCceEcHHHHHHHHHc-----CCcCCCCCCeee
Confidence 479999999998654322 358999987644
No 130
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=41.44 E-value=44 Score=22.93 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.2
Q ss_pred EcCCCeEEccCCeEEEccCCC--CCCCeEEEEeEEEEcC
Q 027964 16 IKGTNKVVRPGDCVLMRPADS--DKPPYVARVEKIEADH 52 (216)
Q Consensus 16 v~~~~~~~~vGD~V~v~~~~~--~~~~~I~~I~~i~~~~ 52 (216)
+.+....|.+|+-|++.-+++ ....|-|+|++|....
T Consensus 13 ~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 13 LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 344456789999999998631 2578999999998754
No 131
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=40.23 E-value=17 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=24.7
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+++| .|....- -...-.+|..|+.-.|..|+..
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 46777 6766432 1235588999999999999864
No 132
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=37.53 E-value=37 Score=24.07 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=28.9
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRV 60 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v 60 (216)
...|+.||.|.|..+. +.--.|+|.++... .+.+.|+.
T Consensus 40 ~~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k-~~~V~VEg 77 (120)
T 1vq8_T 40 NVRVNAGDTVEVLRGD--FAGEEGEVINVDLD-KAVIHVED 77 (120)
T ss_dssp EEECCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEETT
T ss_pred cccccCCCEEEEEecC--CCCCEEEEEEEECC-CCEEEEeC
Confidence 3578999999999987 56789999999863 34444443
No 133
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.41 E-value=29 Score=25.28 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=33.3
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeecc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRP 66 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp 66 (216)
..+.+||.|.|..+. -.-..|.|.++... .+.+.|.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~-k~~v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDES-KDEVVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCC-CCEEEEEEEeccee
Confidence 357899999999986 57789999999863 45577777777554
No 134
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=37.18 E-value=10 Score=24.71 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=23.8
Q ss_pred EEccCCeEEEccCC-CCCCCeEEEEeEEEEc
Q 027964 22 VVRPGDCVLMRPAD-SDKPPYVARVEKIEAD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~-~~~~~~I~~I~~i~~~ 51 (216)
.+.+|+.|++..++ ..+..|-|+|+++...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 67899999999764 1247899999998864
No 135
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.14 E-value=20 Score=23.38 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=24.9
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- -...-++|..|+.-.|..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 46677 6766542 1235689999999999999865
No 136
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=36.23 E-value=9 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=25.1
Q ss_pred eE-EeCCCCCCCCceEeCccccceecCcCCCCChhhh
Q 027964 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA 175 (216)
Q Consensus 140 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~ 175 (216)
.| .|+.. ..+....|..|+...|..|+..+....
T Consensus 49 ~C~~C~~~--~~~~~Y~C~~C~f~lH~~Ca~~p~~~~ 83 (89)
T 1v5n_A 49 TCDKCEEE--GTIWSYHCDECDFDLHAKCALNEDTKE 83 (89)
T ss_dssp CCTTTSCC--CCSCEEECTTTCCCCCHHHHHCSSCSS
T ss_pred EeCCCCCc--CCCcEEEcCCCCCeEcHHhcCCCCccc
Confidence 45 56654 356778999999999999987765443
No 137
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=35.80 E-value=17 Score=23.24 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCcceE-EeCCCCCCCCceEeCccccceecCcCCC
Q 027964 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMG 169 (216)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~ 169 (216)
..+++| .|+... ...-.+|..|+.-.|..|..
T Consensus 33 ~~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 33 GGPGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SSCCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CCCcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 346677 666654 44557899999999999975
No 138
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=35.71 E-value=26 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.465 Sum_probs=24.4
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- -...-.+|..|+.-.|..|+..
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 46677 6766542 1235578999999999999864
No 139
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.83 E-value=46 Score=23.65 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
..|+.||.|.|..+. +.--.|+|.++....
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLKR 73 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETTT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEecC
Confidence 578899999999987 566789999998643
No 140
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.74 E-value=30 Score=22.62 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=41.7
Q ss_pred cccCCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcC---CCeEEccccccccc
Q 027964 131 GFTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKK---LDHFLCSDCSSDVD 191 (216)
Q Consensus 131 ~f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~---~~~~~C~~C~~~~~ 191 (216)
.+.|+.....| .|+.++..-..--.|-.|+..|...|.......+.. ...-+|..|.....
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred ccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 44566677778 788887655556789999999999998654322111 13578999986543
No 141
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=34.62 E-value=36 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=23.4
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
.+++||.++..-.. +...|=|+|.+|..
T Consensus 10 ~~kvGd~C~A~ys~-Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIWSE-DGCIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred CCCCCCEEEEEECC-CCCEEEEEEEEecC
Confidence 57899999998853 37899999999965
No 142
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=34.57 E-value=18 Score=21.91 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.6
Q ss_pred CCCeEEccccccccc
Q 027964 177 KLDHFLCSDCSSDVD 191 (216)
Q Consensus 177 ~~~~~~C~~C~~~~~ 191 (216)
.++.|.|+.|.....
T Consensus 33 lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 33 IPADWVCPDCGVGKI 47 (55)
T ss_dssp SCTTCCCTTTCCCGG
T ss_pred CCCCCcCCCCCCCHH
Confidence 457899999987543
No 143
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.21 E-value=34 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=24.6
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- -...-.+|..|+.-.|..|+..
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 46677 6766541 1235588999999999999875
No 144
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=33.27 E-value=56 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=27.3
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRV 60 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v 60 (216)
..|+.||.|.|.++. +.--.|+|..+.... +.+.|+.
T Consensus 48 ~~IkkgD~V~Vi~Gk--dKGk~GkV~~V~~kk-~~V~VEg 84 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGS--KKGQEGKISSVYRLK-FAVQVDK 84 (127)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEEGGG-TEEEEET
T ss_pred ccccCCCEEEEeecC--CCCccceEEEEECCC-CEEEEeC
Confidence 478899999999997 455579999998743 3344443
No 145
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.59 E-value=41 Score=24.68 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=30.1
Q ss_pred eEEccCCeEEEccCCCCCCCeE-EEEeEEEEcCCCCEEEEEEEeeccc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYV-ARVEKIEADHRNNVKVRVRWYYRPE 67 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I-~~I~~i~~~~~g~~~v~v~Wfyrp~ 67 (216)
..|+.||.|.|..+. +.--. |+|..+... .+.+.|++.=..+|.
T Consensus 47 ~~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k-~~~V~VEgvn~~Kp~ 91 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGH--YKGQQIGKVVQVYRK-KYVIYIERVQREKAN 91 (145)
T ss_dssp CBCCTTCEEEECSST--TTTCCSEEEEEEETT-TTEEEETTCEEECSS
T ss_pred cccCCCCEEEEeecC--CCCcceeEEEEEECC-CCEEEEeeeEeEcCC
Confidence 468999999999987 55667 999999864 333444433333443
No 146
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.55 E-value=18 Score=23.85 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEeCccccceecCcCC----CCCh--hhhcCCCeEEcccccccccc
Q 027964 153 MVQCEGCKDWFHPSCM----GMTI--EEAKKLDHFLCSDCSSDVDA 192 (216)
Q Consensus 153 ~i~C~~C~~w~H~~Cv----~~~~--~~~~~~~~~~C~~C~~~~~~ 192 (216)
..+|..|+-.|-..== +++. ...+.++.|.|+.|......
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~ 72 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGG
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHH
Confidence 3567777765553210 1111 11224578999999975443
No 147
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.16 E-value=22 Score=21.27 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.5
Q ss_pred CCCeEEccccccc
Q 027964 177 KLDHFLCSDCSSD 189 (216)
Q Consensus 177 ~~~~~~C~~C~~~ 189 (216)
.++.|.|+.|...
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 3578999999875
No 148
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=32.10 E-value=41 Score=23.44 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.4
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
.|+.||.|.|.++. +.--.|+|.++....
T Consensus 6 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 6 HVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp SCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred ccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 57889999999987 566789999998753
No 149
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=31.96 E-value=13 Score=21.48 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=23.8
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- -...-.+|..|+.-.|..|+..
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 45666 6666442 1246688999999999999763
No 150
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=31.35 E-value=1e+02 Score=20.53 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=20.0
Q ss_pred eEEEcCCCeEEccCCeEEEccCCCCCC
Q 027964 13 SYNIKGTNKVVRPGDCVLMRPADSDKP 39 (216)
Q Consensus 13 ~~~v~~~~~~~~vGD~V~v~~~~~~~~ 39 (216)
.+.+++.+...++||.|.|...-|.++
T Consensus 40 k~~aHDe~n~~k~GD~V~I~E~RPlSK 66 (89)
T 1qd7_I 40 KYKAHDEHNEAKVGDIVKIMETRPLSA 66 (89)
T ss_pred EEEEeCCccCCCCCCEEEEEEcccCCC
Confidence 455666666899999999998765444
No 151
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.12 E-value=39 Score=22.46 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=24.6
Q ss_pred eEEccCCeEEEccC--CCCCCCeEEEEeEEEEcC
Q 027964 21 KVVRPGDCVLMRPA--DSDKPPYVARVEKIEADH 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~--~~~~~~~I~~I~~i~~~~ 52 (216)
..|.+|+-|++.-. +.++..|-|+|+++....
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~ 41 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS 41 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC
Confidence 36889999999863 123689999999988743
No 152
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=31.03 E-value=42 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|...+.++..|.|++
T Consensus 33 ~eLsf~~Gd~i~v~~~~~~~gWw~g~~ 59 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAEAEHNWWEGRN 59 (78)
T ss_dssp CCCCBCTTCEEEEEECCSSCSCEEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCCeEEEEE
Confidence 456789999999998743467888876
No 153
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.88 E-value=5.1 Score=25.06 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRS 195 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~ 195 (216)
...| +|...+. ..+.- .|+..||..|+..-.. ....|+.|........+
T Consensus 15 ~~~C~IC~~~~~---~~~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 15 VPECAICLQTCV---HPVSL-PCKHVFCYLCVKGASW-----LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CCBCSSSSSBCS---SEEEE-TTTEEEEHHHHHHCTT-----CSSBCSSSCCBCCHHHH
T ss_pred CCCCccCCcccC---CCEEc-cCCCHHHHHHHHHHHH-----CCCcCcCcCchhCHhhc
Confidence 3445 7766542 12222 5899999999853222 12589999988765533
No 154
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=30.81 E-value=50 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
.|+.||.|.|.++. +.--.|+|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 36789999999987 56678999999875
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.68 E-value=6.3 Score=29.35 Aligned_cols=53 Identities=26% Similarity=0.486 Sum_probs=38.2
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
....| +|..++. -+..-..|..|+.-+...|-..... ...|.|..|......+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~----~~~W~C~vC~k~rel~ 121 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE----EQGWLCDPCHLARVVK 121 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS----SSSCEEHHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC----CCcEeeHHHHHHHHHH
Confidence 35567 7888753 2345688999999999999754432 2479999999887655
No 156
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.08 E-value=18 Score=19.69 Aligned_cols=14 Identities=21% Similarity=0.895 Sum_probs=10.5
Q ss_pred CeEEcccccccccc
Q 027964 179 DHFLCSDCSSDVDA 192 (216)
Q Consensus 179 ~~~~C~~C~~~~~~ 192 (216)
+-|+||.|+.....
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 35999999876543
No 157
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=29.63 E-value=51 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.6
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
.+++||.|+....+ ..+|=|+|+++..
T Consensus 5 ~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 5 SITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp CCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred eeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 67899999988876 7999999999865
No 158
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=35.68 E-value=11 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=23.9
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
..+++||.|+-...| ..+|-|+|.++-.
T Consensus 5 ~~~kvGd~clAkwsD--g~wY~A~I~~v~~ 32 (81)
T 2ldm_A 5 SEFQINEQVLASWSD--SRFYPAKVTAVNK 32 (81)
Confidence 368899999998884 7899999999864
No 159
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.36 E-value=35 Score=20.32 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=11.1
Q ss_pred CCCeEEcccccccc
Q 027964 177 KLDHFLCSDCSSDV 190 (216)
Q Consensus 177 ~~~~~~C~~C~~~~ 190 (216)
.++.|.|+.|....
T Consensus 32 lP~dw~CP~Cg~~K 45 (52)
T 1yk4_A 32 LPDDWVCPLCGAPK 45 (52)
T ss_dssp SCTTCBCTTTCCBG
T ss_pred CCCCCcCCCCCCCH
Confidence 45789999998753
No 160
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.03 E-value=11 Score=26.92 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCCCcceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 134 PDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 134 p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
|+.....| .|+.++..-..--.|-.|+..|...|....... .-+|..|-...
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-----vRVC~~C~~~~ 67 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-----PRLCLLCQRFR 67 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-----ceECHHHHHHH
Confidence 55566677 888877654455789999999999998765432 56899997653
No 161
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=28.94 E-value=1e+02 Score=21.39 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCeEEccCCeEEEccCCC--CCCCeEEEEeEEEEcC
Q 027964 18 GTNKVVRPGDCVLMRPADS--DKPPYVARVEKIEADH 52 (216)
Q Consensus 18 ~~~~~~~vGD~V~v~~~~~--~~~~~I~~I~~i~~~~ 52 (216)
|....|.+|+-|++.-+++ ....|-|+|++|...+
T Consensus 15 ~~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 3345789999999997642 1357999999998754
No 162
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=28.86 E-value=69 Score=22.34 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.8
Q ss_pred eEEccCCeEEEccCC
Q 027964 21 KVVRPGDCVLMRPAD 35 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~ 35 (216)
..++.||++++.++.
T Consensus 89 ~~l~~GD~~~ip~g~ 103 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGY 103 (123)
T ss_dssp EEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCC
Confidence 578899999998876
No 163
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=28.85 E-value=57 Score=21.87 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.0
Q ss_pred EEEc-CCCeEEccCCeEEEccCC
Q 027964 14 YNIK-GTNKVVRPGDCVLMRPAD 35 (216)
Q Consensus 14 ~~v~-~~~~~~~vGD~V~v~~~~ 35 (216)
+.++ +....++.||.+++.++.
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 3455 445678889999998876
No 164
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=28.20 E-value=40 Score=23.71 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=26.6
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVR 59 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~ 59 (216)
.|+.||.|.|.++. +.--.|+|.++... .+.+.|+
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~-~~~V~VE 49 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPR-DQKVVVE 49 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETT-TTEEEES
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECC-CCEEEEe
Confidence 47889999999987 67789999999864 3334443
No 165
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=28.09 E-value=14 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=17.5
Q ss_pred eEEeCCCC-------CCCCceEeCccccceecC
Q 027964 140 YCKCEMPY-------NPDDLMVQCEGCKDWFHP 165 (216)
Q Consensus 140 ~C~C~~~~-------~~~~~~i~C~~C~~w~H~ 165 (216)
.|.|+..+ ..++..++|++|.-|...
T Consensus 25 pCrCGd~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 25 PCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EETTTEEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred eCCCCCeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 36676544 124578999999888754
No 166
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.74 E-value=25 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCCcceE-EeCCCCC-CCCceEeCccccceecCcCCC
Q 027964 135 DRVAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMG 169 (216)
Q Consensus 135 ~~~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~ 169 (216)
...+++| .|+.... -...-..|..|+..+|..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 4567888 7777653 234557899999999999976
No 167
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.51 E-value=29 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=20.5
Q ss_pred cccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 158 GCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 158 ~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
.|+..|+..|+.. ....|+.|.......
T Consensus 23 ~CgH~fC~~Ci~~--------~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 23 PCLHTLCSGCLEA--------SGMQCPICQAPWPLG 50 (56)
T ss_dssp TTSCCSBTTTCSS--------SSSSCSSCCSSSSCC
T ss_pred CCCCcccHHHHcc--------CCCCCCcCCcEeecC
Confidence 4788899999866 135799998775543
No 168
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=27.04 E-value=55 Score=21.09 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEEe
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARVE 46 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I~ 46 (216)
+...++.||.|.|.... ++..|.|++.
T Consensus 34 ~eLsf~~GDiI~V~~~~-~~gWw~G~~~ 60 (83)
T 2ke9_A 34 TALNVRAGDVITVLEQH-PDGRWKGHIH 60 (83)
T ss_dssp TBCCBCTTCEEEESCSS-CSSCEEEEEC
T ss_pred CcccccCCCEEEEEEec-CCCeEEEEEC
Confidence 45678999999999875 3458888753
No 169
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.60 E-value=42 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=22.8
Q ss_pred ceEeCccccceecCcCCCCCh-------hhhcCCCeEEccccccccc
Q 027964 152 LMVQCEGCKDWFHPSCMGMTI-------EEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 152 ~~i~C~~C~~w~H~~Cv~~~~-------~~~~~~~~~~C~~C~~~~~ 191 (216)
....|..|+-.|... .|-+. ...+.++.|.|+.|.....
T Consensus 34 ~~y~C~vCGyvYD~~-~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 79 (87)
T 1s24_A 34 LKWICITCGHIYDEA-LGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 79 (87)
T ss_dssp CEEEETTTTEEEETT-SCCTTTTCCSCCCGGGCCTTCCCSSSCCCGG
T ss_pred ceEECCCCCeEecCC-cCCcccCcCCCCChhHCCCCCCCCCCCCCHH
Confidence 346788887666543 12111 1123457899999987543
No 170
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.15 E-value=55 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=16.0
Q ss_pred EEEcCCC--eEEccCCeEEEccCC
Q 027964 14 YNIKGTN--KVVRPGDCVLMRPAD 35 (216)
Q Consensus 14 ~~v~~~~--~~~~vGD~V~v~~~~ 35 (216)
+.+.+.. ..++.||+|+|.+..
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 3445555 678999999998875
No 171
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=25.94 E-value=44 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=19.3
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|.... ++.-|.|++
T Consensus 36 ~eLsf~~Gd~i~v~~~~-~~~Ww~g~~ 61 (62)
T 1g2b_A 36 REVTMKKGDILTLLNST-NKDWWKVEV 61 (62)
T ss_dssp TBCCBCTTCEEEEEECC-SSSEEEEEE
T ss_pred CccCCCCCCEEEEEEec-CCCEEEEEe
Confidence 35678899999999875 356777765
No 172
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=25.62 E-value=25 Score=21.69 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=23.5
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCC
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMG 169 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~ 169 (216)
+..| .|+....-+.....|..|...-|..|-.
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 4566 6666554455778999999999999954
No 173
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=25.55 E-value=56 Score=22.66 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCCcceeeEEEcCCCeEEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 6 ~~~~~y~~~~v~~~~~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
+|+|.+---.-+.+-..+++||.+.+. +....++|.+|..
T Consensus 17 ~G~KtiEiRlnd~k~~~ikvGD~I~f~-----~~~l~~~V~~v~~ 56 (109)
T 2z0t_A 17 AGKKKIEGRLYDEKRRQIKPGDIIIFE-----GGKLKVKVKGIRV 56 (109)
T ss_dssp TTSCCEEEEECCTTGGGCCTTCEEEEG-----GGTEEEEEEEEEE
T ss_pred cCCCEEEEEecchhhhcCCCCCEEEEC-----CCEEEEEEEEEEc
Confidence 566666655444443467899999992 2356777777765
No 174
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=25.32 E-value=77 Score=23.60 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=34.9
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEeeccccc
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEES 69 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp~d~ 69 (216)
.+.+||.|.|..+. -.-+.|.|.++... .+.+.|.+..|-|.-.+
T Consensus 127 ~~~~Gd~V~V~~GP--f~g~~G~v~~v~~~-k~r~~V~v~ifgr~t~v 171 (181)
T 2jvv_A 127 LFEPGEMVRVNDGP--FADFNGVVEEVDYE-KSRLKVSVSIFGRATPV 171 (181)
T ss_dssp CCCTTEEEEECSST--TTTEEEEEEEEETT-TTEEEEEEEETTEEEEE
T ss_pred cCCCCCEEEEeccC--CCCcEEEEEEEeCC-CCEEEEEEEECCCCEEE
Confidence 57799999999986 57789999998763 35688888887765443
No 175
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=24.94 E-value=23 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.569 Sum_probs=15.9
Q ss_pred EEeCCCCC-------CCCceEeCccccceec
Q 027964 141 CKCEMPYN-------PDDLMVQCEGCKDWFH 164 (216)
Q Consensus 141 C~C~~~~~-------~~~~~i~C~~C~~w~H 164 (216)
|.|+..+. .+...++|+.|.-|..
T Consensus 33 CrCGd~F~it~edL~~ge~iv~C~sCSL~I~ 63 (83)
T 1wge_A 33 CPCGDNFAITKEDLENGEDVATCPSCSLIIK 63 (83)
T ss_dssp CSSSSCEEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred CCCCCEEEECHHHHhCCCEEEECCCCceEEE
Confidence 66666441 2346788999988764
No 176
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.90 E-value=33 Score=20.27 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 150 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 150 ~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
++....|+.|+..|-..-.-. .. -.....|.|+.|......+
T Consensus 11 ~~k~~~C~~C~k~F~~~~~l~-~~-H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEANQ-LF-DPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSSEEECSSSCCEEEHHHHHH-HE-ETTTTEEBCSSSCCBCEEC
T ss_pred CCCCccCCCCCchhccHHHhH-hh-cCCCCCEECCCCCCccccC
Confidence 345578999988774211000 00 0011469999999876655
No 177
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=24.75 E-value=55 Score=22.92 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=17.5
Q ss_pred EccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 23 VRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
+.+||.|.|...+ ...--|.|+.+..
T Consensus 71 i~~GD~V~ve~~~--~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 71 VNPGDIVLVSLRD--FQDSKGDIILKYT 96 (117)
T ss_dssp CCTTCEEEEEECT--TCTTEEEEEEECC
T ss_pred CCCCCEEEEEEEc--CCCCeEEEEEEec
Confidence 3489999998763 1123677877765
No 178
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=24.63 E-value=85 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=24.1
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
..|+.||.|.|.++. +.--.|+|..+...
T Consensus 47 ~~IkKGD~V~Vi~Gk--dKGk~GkVl~V~~k 75 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGS--YKGREGKVVQVYRR 75 (150)
T ss_dssp EECCSSSEEEECSST--TTTCEEEEEEEETT
T ss_pred cccCCCCEEEEeecC--CCCccceEEEEEcC
Confidence 478899999999987 45558999999864
No 179
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=23.96 E-value=1.4e+02 Score=19.22 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCCeEEEEeEEEEcCCCCEEEEEEEeecc
Q 027964 37 DKPPYVARVEKIEADHRNNVKVRVRWYYRP 66 (216)
Q Consensus 37 ~~~~~I~~I~~i~~~~~g~~~v~v~Wfyrp 66 (216)
++.+-|-+|+.-....+|.....|.|--.|
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~ 50 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYG 50 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCC
Confidence 356778888887777788899999995443
No 180
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=23.76 E-value=49 Score=19.41 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=18.0
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
...++.||.|.|.....++..|.|+.
T Consensus 19 eLs~~~Gd~i~v~~~~~~~~W~~g~~ 44 (60)
T 2x3w_D 19 ELSFKAGDELTKLGEEDEQGWCRGRL 44 (60)
T ss_dssp BCCBCTTCEEEECSCCCSSSEEEEEC
T ss_pred cccCCCCCEEEEEEccCCCCceEEEe
Confidence 46788999999987642335666654
No 181
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=23.71 E-value=14 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=10.0
Q ss_pred CceEeCccccceec
Q 027964 151 DLMVQCEGCKDWFH 164 (216)
Q Consensus 151 ~~~i~C~~C~~w~H 164 (216)
...++|++|.-|..
T Consensus 43 e~iv~C~sCSL~Ik 56 (89)
T 2jr7_A 43 EDVATCPSCSLIIK 56 (89)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CEEEECCCCccEEE
Confidence 45788888877764
No 182
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.68 E-value=28 Score=21.55 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=23.1
Q ss_pred CcceE-EeCCCCCC-CCceEeCccccceecCcCCC
Q 027964 137 VAVYC-KCEMPYNP-DDLMVQCEGCKDWFHPSCMG 169 (216)
Q Consensus 137 ~~~~C-~C~~~~~~-~~~~i~C~~C~~w~H~~Cv~ 169 (216)
.+++| .|+...-. ...-.+|..|+.-.|..|+.
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 45667 66665411 23558899999999999975
No 183
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=23.48 E-value=7 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=21.8
Q ss_pred CccccceecCcCCCCChhhhcCCCeEEccccccccc
Q 027964 156 CEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 156 C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (216)
|.+...++|..|+..=.... ....|+.|.....
T Consensus 26 C~gs~~~~H~~Cl~~W~~~~---~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 26 CTGELENVHRSCLSTWLTIS---RNTACQICGVVYN 58 (60)
T ss_dssp CSSGGGSCCHHHHHHHHHHH---TCSBCTTTCCBCC
T ss_pred CCCchhhhHHHHHHHHHHhC---CCCccCCCCCeee
Confidence 44556799999995433221 2468999987654
No 184
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=23.32 E-value=21 Score=22.96 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=31.1
Q ss_pred cceE-EeCCCCCC-CCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 138 AVYC-KCEMPYNP-DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 138 ~~~C-~C~~~~~~-~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
...| +|-.+... +.....| .|+.-|+..|+..-... ..+.||.|.+.....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~----~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTD----ENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTS----SCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhc----CCCCCCCCCCccCCC
Confidence 4456 77776642 2222233 58888888887422111 357999999877654
No 185
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=28.86 E-value=17 Score=24.09 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=23.6
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
..|.+|+.|++..++ ..|-|+|++|...
T Consensus 11 ~~~~~Gekv~~~~~~---~~y~AkIl~i~~~ 38 (85)
T 2lrq_A 11 TLFVDGERVLCFHGP---LIYEAKVLKTKPD 38 (85)
Confidence 478899999999864 5799999999874
No 186
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=23.03 E-value=56 Score=21.18 Aligned_cols=33 Identities=24% Similarity=0.777 Sum_probs=22.3
Q ss_pred eEeCc-cccceecCcCCCCChhhh----cCCCeEEccc
Q 027964 153 MVQCE-GCKDWFHPSCMGMTIEEA----KKLDHFLCSD 185 (216)
Q Consensus 153 ~i~C~-~C~~w~H~~Cv~~~~~~~----~~~~~~~C~~ 185 (216)
||.|. .=+.|.|..|+.+++... +.-.+|+|..
T Consensus 38 mi~cs~g~ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 38 MIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp CEECCSSSCCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred hhhcCCCcchHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 77775 238999999999986542 2224677653
No 187
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.98 E-value=58 Score=21.50 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=19.0
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|+|.....++..|.|++
T Consensus 38 ~eLsf~~Gd~i~v~~~~~~~gWw~g~~ 64 (96)
T 1wie_A 38 AELPLTAGKYLYVYGDMDEDGFYEGEL 64 (96)
T ss_dssp TBCCCCTTCEEEEESSCCSSSCCEEEE
T ss_pred CeeeECCCCEEEEeEecCCCCEEEEEE
Confidence 346688999999993322466788775
No 188
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=22.90 E-value=59 Score=19.76 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=18.8
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
...++.||.|.|.....++.-|.|+.
T Consensus 26 eLsf~~Gd~i~v~~~~~~~~Ww~g~~ 51 (70)
T 1gcq_C 26 FLRLNPGDIVELTKAEAEHNWWEGRN 51 (70)
T ss_dssp BCCBCTTCEEEEEECCTTCSEEEEEE
T ss_pred cCCcCCCCEEEEEeCCCCCCCeEEEe
Confidence 56788999999988733456677754
No 189
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=22.71 E-value=1e+02 Score=22.25 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=23.8
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
..|+.||.|.|.++. +.--.|+|..+...
T Consensus 47 ~~IkkgD~V~Vi~Gk--dKGk~GkV~~V~~k 75 (135)
T 4a17_S 47 MPVRKDDEVLIVRGK--FKGNKGKVTQVYRK 75 (135)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEeecC--CCCceeeEEEEEcC
Confidence 468899999999987 45557999999864
No 190
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=22.69 E-value=17 Score=22.85 Aligned_cols=47 Identities=19% Similarity=0.489 Sum_probs=30.0
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
...| +|...+. ..+.-..|+..||..|+..-.... ....|+.|....
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSS
T ss_pred CCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcC
Confidence 3445 7766653 223334599999999986544321 246899999853
No 191
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=22.63 E-value=1.3e+02 Score=20.16 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.5
Q ss_pred cCCeEEEccCCCCCCCeEEEEeEEEEcC
Q 027964 25 PGDCVLMRPADSDKPPYVARVEKIEADH 52 (216)
Q Consensus 25 vGD~V~v~~~~~~~~~~I~~I~~i~~~~ 52 (216)
.|..|++...+ +..+-|+|+++....
T Consensus 17 ~~e~vlc~~~d--g~~yeAeIl~ir~~~ 42 (92)
T 2bud_A 17 PDKIYFIRRED--GTVHRGQVLQSRTTE 42 (92)
T ss_dssp TTSCEEEECTT--SCEEEEEEEEEECTT
T ss_pred CCCEEEEEeCC--CCEEEEEEEEEeecc
Confidence 47799999964 689999999999765
No 192
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=22.60 E-value=19 Score=24.15 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=33.0
Q ss_pred eE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEccccccccccc
Q 027964 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (216)
Q Consensus 140 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 193 (216)
.| +|..... ..+.|..|+..||..|+..-.... ...||.|.......
T Consensus 24 ~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 24 RCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLR 71 (100)
T ss_dssp BCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGG
T ss_pred CCccCCcccc---CccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHH
Confidence 45 7766543 467788999999999996543321 26899999876544
No 193
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.53 E-value=62 Score=20.18 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=19.1
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|......+..|.|++
T Consensus 29 ~eLsf~~Gd~i~v~~~~~~~gWw~g~~ 55 (76)
T 2csi_A 29 AELTFCTGDIITVFGEIDEDGFYYGEL 55 (76)
T ss_dssp TSCCCCTTCEEEEESSCCSSSEEEEEE
T ss_pred CcccCCCCCEEEEeEecCCCCeEEEEE
Confidence 456789999999998752234677764
No 194
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=22.34 E-value=87 Score=22.45 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=25.1
Q ss_pred eEEccCCeEEEccCCCCCCCeEEEEeEEEEcCCC
Q 027964 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRN 54 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~~I~~i~~~~~g 54 (216)
..|.+|.-|+..-++ .+|=|+|++||...+.
T Consensus 6 p~f~~gE~VlcfHg~---~~YeAKIl~i~d~~~~ 36 (130)
T 3e9g_A 6 QEFALGGRCLAFHGP---LMYEAKILKIWDPSSK 36 (130)
T ss_dssp -CCCTTCEEEEEETT---EEEEEEEEEEEETTTT
T ss_pred ccccCCCEEEEEeCC---cceeeEEEEeeCCCcc
Confidence 368899999999886 5899999999875543
No 195
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=22.27 E-value=60 Score=22.37 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=15.7
Q ss_pred EEcCCCeEEccCCeEEEccCC
Q 027964 15 NIKGTNKVVRPGDCVLMRPAD 35 (216)
Q Consensus 15 ~v~~~~~~~~vGD~V~v~~~~ 35 (216)
.+++...+++.||.|+|.++.
T Consensus 73 ~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 73 STDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 345545678899999999886
No 196
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=22.22 E-value=62 Score=19.50 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=19.1
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEEe
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARVE 46 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I~ 46 (216)
...++.||.|.|...+.++..|.|+..
T Consensus 23 eLs~~~Gd~i~v~~~~~~~~Ww~g~~~ 49 (67)
T 2kxc_A 23 LLSFAQGDVITLLIPEEKDGWLYGEHD 49 (67)
T ss_dssp BCCBCTTCEEEESSSSCBTTEEEEEES
T ss_pred CCcCCCCCEEEEeECCCCCCcEEEEEC
Confidence 467899999999974223566777653
No 197
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=22.17 E-value=47 Score=19.48 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=20.0
Q ss_pred EccCCeEEEccCCCCCCCeEEEEeEEEEc
Q 027964 23 VRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (216)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~I~~I~~i~~~ 51 (216)
+++||.++..-.+ ++..|=|+|.++..+
T Consensus 2 wk~G~~c~A~~s~-Dg~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYWE-DNKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEETT-TTEEEEEEEEEC--C
T ss_pred CCCCCEEEEEECC-CCCEEEEEEEEEeCC
Confidence 4789998888643 267899999998653
No 198
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=21.93 E-value=64 Score=18.42 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.4
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
...++.||.|.|......+..|.|+.
T Consensus 16 eLs~~~Gd~i~v~~~~~~~~W~~g~~ 41 (54)
T 2a28_A 16 EISIDPGDIITVIRGDDGSGWTYGEC 41 (54)
T ss_dssp BCCBCTTCEEEEEECCCSSSEEEEEE
T ss_pred CccCCCCCEEEEEEecCCCCEEEEEE
Confidence 45688999999988763245666665
No 199
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=21.89 E-value=20 Score=21.79 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=22.3
Q ss_pred CcceE-EeCCCCCCCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+... .....+|..|+.-.|..|...
T Consensus 21 ~pt~C~~C~~~i--~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 21 GPGWCDLCGREV--LRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CCEECTTTCSEE--CSCCEECTTTSCEECHHHHTT
T ss_pred CCeEchhcchhh--hhCccEeCCCCCeEehhhhhh
Confidence 45666 555544 345578999999999988653
No 200
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=21.68 E-value=59 Score=19.80 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=18.3
Q ss_pred CeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 20 NKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
...++.||.|.|.....++..|.|+.
T Consensus 22 eLs~~~Gd~i~v~~~~~~~~Ww~g~~ 47 (71)
T 2jt4_A 22 ELTIKSGDKVYILDDKKSKDWWMCQL 47 (71)
T ss_dssp BCCBCTTCEEEEEESSSCSSEEEEEE
T ss_pred cccCCCCCEEEEEECCCCCCCEEEEE
Confidence 46788999999988642355666655
No 201
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.65 E-value=17 Score=28.96 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=31.8
Q ss_pred cceE-EeCCCCCCCCceEeCccccceecCcCCCCChhhhcCCCeEEcccccccc
Q 027964 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (216)
Q Consensus 138 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (216)
...| +|...--++ +.|..|+.-||..|+.--... -..-.||.|...-
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~---~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQS---NAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTT---CSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHh---CCCCCCCCCCCCC
Confidence 4455 787765433 789999999999999431111 1245899998763
No 202
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=21.58 E-value=53 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.0
Q ss_pred eEEEcCCCeEEccCCeEEEccCCC
Q 027964 13 SYNIKGTNKVVRPGDCVLMRPADS 36 (216)
Q Consensus 13 ~~~v~~~~~~~~vGD~V~v~~~~~ 36 (216)
.+.+++.+...++||.|.|...-|
T Consensus 41 k~~aHDe~n~~k~GD~V~I~E~RP 64 (105)
T 2vqe_Q 41 KYLAHDPEEKYKLGDVVEIIESRP 64 (105)
T ss_dssp EEEEECTTCCCCTTCEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEccc
Confidence 556677667899999999887643
No 203
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.54 E-value=97 Score=19.37 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=19.9
Q ss_pred CCeEEccCCeEEEccCCC-CCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADS-DKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~-~~~~~I~~I 45 (216)
+...++.||.|.|..... ++..|.|+.
T Consensus 32 ~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~ 59 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKTDSHFDWWEGKL 59 (80)
T ss_dssp TBCEECTTCEEEEEECCSCSSSEEEEEE
T ss_pred CeeeEcCCCEEEEeECcCCCCCeEEEEE
Confidence 457899999999988652 245677765
No 204
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.53 E-value=64 Score=19.76 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=19.0
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|...+.++..|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~~~~~~gWw~g~~ 49 (72)
T 1spk_A 23 TLLSFAQGDVLTLLIPEEKDGWLYGEH 49 (72)
T ss_dssp SBCCBCTTCEEEECCSSCBTTEEEEEE
T ss_pred CCCcCCCCCEEEEeEccCCCCcEEEEE
Confidence 346789999999987522356677764
No 205
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=21.28 E-value=66 Score=19.05 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEEe
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARVE 46 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I~ 46 (216)
+...++.||.|.|.... ++..|.|+..
T Consensus 16 ~eLs~~~Gd~i~v~~~~-~~~Ww~g~~~ 42 (65)
T 2oaw_A 16 REVTMKKGDILTLLNST-NKDWWKVEVK 42 (65)
T ss_dssp TBCCBCTTCEEEEEECC-SSSEEEEEEE
T ss_pred CCCCCCCCCEEEEEEcC-CCCEEEEEEc
Confidence 35678899999999875 3567777665
No 206
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=21.05 E-value=50 Score=20.32 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=18.6
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|.... ++.-|.|++
T Consensus 21 ~ELs~~~Gd~i~v~~~~-~~gWw~g~~ 46 (65)
T 2lj0_A 21 DELELRDGDIVDVMEKC-DDGWFVGTS 46 (65)
T ss_dssp TBCCBCTTCEEEEEEEC-TTSEEEEEE
T ss_pred CCcCCCCCCEEEEeEeC-CCCEEEEEE
Confidence 45688999999998754 245666665
No 207
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.88 E-value=2.8e+02 Score=21.91 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.4
Q ss_pred eEEccCCeEEEccCC--CCCCCeEEEEeEEEEcCCCC-EEEEEE
Q 027964 21 KVVRPGDCVLMRPAD--SDKPPYVARVEKIEADHRNN-VKVRVR 61 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~--~~~~~~I~~I~~i~~~~~g~-~~v~v~ 61 (216)
..+++||.|.-..-+ -+....||+|.++..+.++. ..+.|.
T Consensus 168 ~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~ 211 (255)
T 2j5u_A 168 MKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIK 211 (255)
T ss_dssp SCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEE
Confidence 478999988876643 23568999999999876553 444444
No 208
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=20.58 E-value=38 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=15.4
Q ss_pred ceEeCccccceecCcCCC
Q 027964 152 LMVQCEGCKDWFHPSCMG 169 (216)
Q Consensus 152 ~~i~C~~C~~w~H~~Cv~ 169 (216)
.++-|+.|+..|=.+|-.
T Consensus 10 ~yl~CE~C~~~~~~~Cp~ 27 (39)
T 2l9z_A 10 FTIWCTLCDRAYPSDCPE 27 (39)
T ss_dssp CSEEEGGGTEEESSSBTT
T ss_pred hhhHHHHHhhhchhhchh
Confidence 668899999999999964
No 209
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=20.48 E-value=68 Score=18.62 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=19.0
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|.... ++..|.|+.
T Consensus 16 ~eLs~~~Gd~i~v~~~~-~~~Ww~g~~ 41 (58)
T 2bz8_A 16 DELTISVGEIITNIRKE-DGGWWEGQI 41 (58)
T ss_dssp TBCCBCTTCEEEEEECC-TTTEEEEEE
T ss_pred CEeeECCCCEEEEEEeC-CCCEEEEEE
Confidence 35678899999998875 355677764
No 210
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.33 E-value=85 Score=19.42 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=19.8
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEE
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I 45 (216)
+...++.||.|.|.... ++..|.|++
T Consensus 25 ~eLs~~~Gd~i~v~~~~-~~~Ww~g~~ 50 (76)
T 1ujy_A 25 DELSVCKGDIIYVTRVE-EGGWWEGTL 50 (76)
T ss_dssp TSCCBCSSCCEEESSCC-SSSCEEEEE
T ss_pred CcccCCCCCEEEEEEec-CCCEEEEEE
Confidence 35678999999999865 356777774
No 211
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.27 E-value=51 Score=16.63 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=8.5
Q ss_pred CceEeCccccce
Q 027964 151 DLMVQCEGCKDW 162 (216)
Q Consensus 151 ~~~i~C~~C~~w 162 (216)
++-+||..|+..
T Consensus 4 ef~vqcpvcqq~ 15 (29)
T 3vhs_A 4 EFQVQCPVCQQM 15 (29)
T ss_dssp -CEEECTTTCCE
T ss_pred ceeeeChHHHHh
Confidence 567889888764
No 212
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.25 E-value=45 Score=18.80 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=21.5
Q ss_pred CceEeCccccceecCcC-CCCChh-hhcCCCeEEccccccccc
Q 027964 151 DLMVQCEGCKDWFHPSC-MGMTIE-EAKKLDHFLCSDCSSDVD 191 (216)
Q Consensus 151 ~~~i~C~~C~~w~H~~C-v~~~~~-~~~~~~~~~C~~C~~~~~ 191 (216)
+....|+.|++.|-..- +..... .-.....|.|..|.+...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 34578999988773211 000000 000113589999987643
No 213
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=20.25 E-value=56 Score=19.82 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEEe
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARVE 46 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I~ 46 (216)
+...++.||.|.|.... ++..|.|++.
T Consensus 22 ~eLsf~~Gd~i~v~~~~-~~~Ww~g~~~ 48 (68)
T 1tg0_A 22 DDLNFEKDQEIIVTSVE-DAEWYFGEYQ 48 (68)
T ss_dssp TBCCBCTTCEEEEEEEC-SSSEEEEEEE
T ss_pred CCCCCCCCCEEEEEEec-CCCeEEEEEC
Confidence 34678899999998754 3567777764
No 214
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=20.24 E-value=28 Score=21.40 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=23.6
Q ss_pred CcceE-EeCCCCC-CCCceEeCccccceecCcCCCC
Q 027964 137 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (216)
Q Consensus 137 ~~~~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~ 170 (216)
.+.+| .|+...- -...-.+|..|+.-.|..|...
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 45666 5666431 1235588999999999999764
No 215
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=20.20 E-value=67 Score=18.66 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=19.1
Q ss_pred CCeEEccCCeEEEccCCCCCCCeEEEEe
Q 027964 19 TNKVVRPGDCVLMRPADSDKPPYVARVE 46 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~~I~ 46 (216)
+...++.||.|.|.... ++..|.|+..
T Consensus 15 ~eLs~~~Gd~i~v~~~~-~~~Ww~g~~~ 41 (58)
T 1jo8_A 15 NELTFVENDKIINIEFV-DDDWWLGELE 41 (58)
T ss_dssp TBCCBCTTCEEEEEECC-SSSEEEEEET
T ss_pred CCcccCCCCEEEEEEec-CCCcEEEEEC
Confidence 34678899999998864 3556666654
No 216
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=20.16 E-value=85 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=20.6
Q ss_pred EEccCCeEEEccCCCCCCCeEEEEeEEEE
Q 027964 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~~I~~i~~ 50 (216)
.+++||+|-|..+. -.--.|.|..+..
T Consensus 17 ~F~~GDHVkVi~G~--~~getGlVV~v~~ 43 (69)
T 2do3_A 17 YFKMGDHVKVIAGR--FEGDTGLIVRVEE 43 (69)
T ss_dssp SCCTTCEEEESSST--TTTCEEEEEEECS
T ss_pred eccCCCeEEEeccE--EcCceEEEEEEeC
Confidence 68899999999986 3445777777664
Done!