Query 027965
Match_columns 216
No_of_seqs 129 out of 1075
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3384 Aromatic ring-opening 100.0 3.7E-57 8E-62 385.9 16.8 195 16-213 7-202 (268)
2 cd07363 45_DOPA_Dioxygenase Th 100.0 3.8E-56 8.2E-61 384.2 20.4 194 19-216 1-195 (253)
3 PRK10628 LigB family dioxygena 100.0 2.6E-52 5.7E-57 357.3 18.9 181 30-215 2-183 (246)
4 PF02900 LigB: Catalytic LigB 100.0 5E-51 1.1E-55 354.6 7.8 195 19-216 1-216 (272)
5 TIGR02298 HpaD_Fe 3,4-dihydrox 100.0 9.6E-48 2.1E-52 336.5 19.7 180 36-216 30-221 (282)
6 cd07370 HPCD The Class III ext 100.0 2E-46 4.4E-51 327.8 20.9 199 16-216 9-219 (280)
7 cd07373 2A5CPDO_A The alpha su 100.0 2E-46 4.4E-51 326.5 19.7 191 18-216 3-213 (271)
8 cd07362 HPCD_like Class III ex 100.0 4.8E-46 1.1E-50 324.3 19.7 194 20-216 3-216 (272)
9 cd07371 2A5CPDO_AB The alpha a 100.0 2.5E-45 5.4E-50 319.2 20.6 194 21-216 3-210 (268)
10 cd07952 ED_3B_like Uncharacter 100.0 7.5E-43 1.6E-47 301.8 18.6 186 20-216 2-201 (256)
11 cd07367 CarBb CarBb is the B s 100.0 1.7E-41 3.7E-46 295.1 18.7 182 20-216 7-209 (268)
12 cd07372 2A5CPDO_B The beta sub 100.0 5.6E-40 1.2E-44 288.8 19.9 193 20-216 6-231 (294)
13 cd07320 Extradiol_Dioxygenase_ 100.0 5E-40 1.1E-44 283.4 17.0 191 20-216 2-203 (260)
14 cd07949 PCA_45_Doxase_B_like_1 100.0 1.6E-39 3.4E-44 283.7 18.0 181 21-213 8-215 (276)
15 cd07359 PCA_45_Doxase_B_like S 100.0 3.7E-39 8E-44 280.4 19.5 184 20-216 5-212 (271)
16 cd07364 PCA_45_Dioxygenase_B S 100.0 8.4E-39 1.8E-43 279.3 17.6 184 21-214 8-217 (277)
17 PRK13366 protocatechuate 4,5-d 100.0 2E-38 4.4E-43 277.5 18.1 184 20-214 7-217 (284)
18 cd07368 PhnC_Bs_like PhnC is a 100.0 1.8E-38 3.9E-43 277.4 16.5 185 20-216 7-218 (277)
19 PRK03881 hypothetical protein; 100.0 2.2E-38 4.8E-43 294.4 17.8 190 19-216 5-215 (467)
20 cd07951 ED_3B_N_AMMECR1 The N- 100.0 4.5E-38 9.8E-43 271.3 17.6 187 22-216 1-201 (256)
21 PRK13358 protocatechuate 4,5-d 100.0 7.6E-38 1.7E-42 272.2 17.9 182 20-216 7-209 (269)
22 cd07369 PydA_Rs_like PydA is a 100.0 9.6E-38 2.1E-42 277.8 18.4 191 20-216 7-270 (329)
23 cd07950 Gallate_Doxase_N The N 100.0 7.6E-38 1.6E-42 273.4 16.3 182 21-214 8-217 (277)
24 PRK13372 pcmA protocatechuate 100.0 2.4E-37 5.2E-42 281.5 18.9 185 18-214 152-365 (444)
25 PRK13364 protocatechuate 4,5-d 100.0 3E-37 6.5E-42 269.5 18.8 183 20-214 7-216 (278)
26 PRK13367 protocatechuate 4,5-d 100.0 1.5E-36 3.2E-41 275.9 17.7 181 21-209 8-216 (420)
27 PRK13365 protocatechuate 4,5-d 100.0 2.1E-36 4.6E-41 264.4 17.1 182 21-213 8-216 (279)
28 PRK13370 mhpB 3-(2,3-dihydroxy 100.0 6.6E-36 1.4E-40 264.9 19.2 188 20-216 5-248 (313)
29 cd07365 MhpB_like Subunit B of 100.0 1.3E-35 2.8E-40 262.7 19.4 188 20-216 5-248 (310)
30 cd07366 3MGA_Dioxygenase Subun 100.0 1.1E-34 2.3E-39 258.3 17.3 163 37-216 70-267 (328)
31 PRK13363 protocatechuate 4,5-d 100.0 1.9E-34 4.1E-39 257.3 17.2 167 37-216 72-271 (335)
32 PRK13373 putative dioxygenase; 100.0 1.7E-32 3.6E-37 242.5 16.1 164 21-188 8-195 (344)
33 COG3885 Uncharacterized conser 99.8 1.3E-20 2.8E-25 157.7 12.3 183 20-216 5-203 (261)
34 cd07361 MEMO_like Memo (mediat 99.8 1.7E-19 3.7E-24 156.7 15.8 165 20-216 38-204 (266)
35 PRK00782 hypothetical protein; 99.7 9.3E-16 2E-20 133.6 15.6 160 20-216 39-203 (267)
36 COG1355 Predicted dioxygenase 98.8 2.5E-07 5.4E-12 80.4 15.0 139 52-216 73-216 (279)
37 PF01875 Memo: Memo-like prote 98.7 3.5E-08 7.6E-13 86.5 6.7 148 51-216 59-215 (276)
38 KOG3086 Predicted dioxygenase 88.7 2.7 5.9E-05 36.6 8.0 115 96-216 100-226 (296)
39 PRK03995 hypothetical protein; 86.2 8.1 0.00018 33.9 9.7 115 53-187 63-193 (267)
40 PF04414 tRNA_deacylase: D-ami 82.0 3.7 7.9E-05 34.9 5.6 117 51-187 10-142 (213)
41 TIGR02017 hutG_amidohyd N-form 79.6 35 0.00075 29.7 11.1 117 40-170 122-253 (263)
42 PRK05723 flavodoxin; Provision 79.4 11 0.00025 29.9 7.4 78 100-185 14-97 (151)
43 PRK14866 hypothetical protein; 78.7 19 0.0004 34.1 9.6 116 53-187 69-197 (451)
44 PRK09004 FMN-binding protein M 77.8 13 0.00028 29.2 7.3 74 100-185 15-95 (146)
45 PRK08105 flavodoxin; Provision 70.8 33 0.00072 27.0 8.0 76 100-185 15-97 (149)
46 PRK06703 flavodoxin; Provision 67.8 26 0.00056 27.2 6.8 75 100-184 15-94 (151)
47 TIGR01370 cysRS possible cyste 67.0 23 0.00049 31.9 7.0 82 37-118 188-300 (315)
48 COG0426 FpaA Uncharacterized f 65.1 57 0.0012 30.3 9.2 78 101-185 261-343 (388)
49 PRK09271 flavodoxin; Provision 61.0 48 0.001 26.1 7.3 80 100-185 14-98 (160)
50 PF00258 Flavodoxin_1: Flavodo 59.8 45 0.00097 25.3 6.7 96 100-210 10-116 (143)
51 COG2039 Pcp Pyrrolidone-carbox 58.9 75 0.0016 26.8 8.1 98 38-140 45-155 (207)
52 PRK10991 fucI L-fucose isomera 57.5 25 0.00054 34.3 5.7 111 42-181 66-181 (588)
53 PF05013 FGase: N-formylglutam 56.1 18 0.00039 30.4 4.2 99 40-153 114-217 (222)
54 COG4558 ChuT ABC-type hemin tr 55.9 20 0.00044 31.9 4.5 47 16-62 177-241 (300)
55 TIGR01931 cysJ sulfite reducta 51.0 62 0.0014 31.5 7.5 76 100-185 72-155 (597)
56 TIGR03565 alk_sulf_monoox alka 49.0 1.5E+02 0.0032 26.6 9.2 87 98-185 23-111 (346)
57 cd03556 L-fucose_isomerase L-f 47.7 33 0.00072 33.3 4.9 110 42-180 62-176 (584)
58 PRK07308 flavodoxin; Validated 47.7 1.2E+02 0.0025 23.3 7.3 74 100-183 15-93 (146)
59 PRK13193 pyrrolidone-carboxyla 47.7 1.4E+02 0.003 25.2 8.2 78 41-122 48-134 (209)
60 cd03416 CbiX_SirB_N Sirohydroc 46.4 40 0.00087 24.2 4.2 29 20-54 2-30 (101)
61 cd03409 Chelatase_Class_II Cla 45.1 38 0.00083 24.0 3.9 27 20-51 2-28 (101)
62 PF06506 PrpR_N: Propionate ca 43.8 37 0.00079 27.4 4.0 99 100-215 18-125 (176)
63 cd03413 CbiK_C Anaerobic cobal 41.9 49 0.0011 24.5 4.1 28 20-54 3-30 (103)
64 PF02991 Atg8: Autophagy prote 40.5 34 0.00073 25.7 3.1 51 4-62 15-69 (104)
65 PRK00923 sirohydrochlorin coba 40.4 62 0.0013 24.3 4.6 30 19-54 3-32 (126)
66 PRK10953 cysJ sulfite reductas 39.8 1E+02 0.0023 30.1 7.1 76 100-185 75-158 (600)
67 cd03414 CbiX_SirB_C Sirohydroc 39.2 67 0.0015 23.6 4.6 29 20-54 3-31 (117)
68 cd07409 MPP_CD73_N CD73 ecto-5 39.0 38 0.00083 29.4 3.6 26 39-65 168-193 (281)
69 cd03412 CbiK_N Anaerobic cobal 38.7 57 0.0012 24.9 4.2 33 20-58 3-35 (127)
70 TIGR03559 F420_Rv3520c probabl 38.0 2.9E+02 0.0062 24.5 10.0 85 100-186 11-98 (325)
71 cd07405 MPP_UshA_N Escherichia 36.9 44 0.00094 29.2 3.7 27 39-66 159-185 (285)
72 cd07406 MPP_CG11883_N Drosophi 34.7 52 0.0011 28.1 3.7 28 37-65 155-182 (257)
73 PF12500 TRSP: TRSP domain C t 34.7 39 0.00084 27.3 2.8 28 160-187 44-72 (155)
74 PRK00719 alkanesulfonate monoo 34.5 2.8E+02 0.0061 25.2 8.7 89 99-188 25-115 (378)
75 cd07410 MPP_CpdB_N Escherichia 33.8 53 0.0011 28.2 3.7 27 39-66 169-195 (277)
76 cd01611 GABARAP Ubiquitin doma 33.6 38 0.00082 25.7 2.4 56 4-63 23-78 (112)
77 cd03415 CbiX_CbiC Archaeal sir 33.4 78 0.0017 24.4 4.2 27 19-51 2-28 (125)
78 TIGR01918 various_sel_PB selen 32.8 1.5E+02 0.0033 27.9 6.6 52 100-151 321-372 (431)
79 cd00501 Peptidase_C15 Pyroglut 31.3 2.9E+02 0.0062 22.5 9.5 109 40-152 47-168 (194)
80 COG4245 TerY Uncharacterized p 31.2 2E+02 0.0043 24.2 6.4 171 15-215 1-187 (207)
81 cd07382 MPP_DR1281 Deinococcus 30.8 26 0.00057 30.4 1.2 67 105-180 48-114 (255)
82 PRK05948 precorrin-2 methyltra 30.0 2.5E+02 0.0054 23.9 7.2 82 98-185 13-105 (238)
83 TIGR01089 fucI L-fucose isomer 29.9 1.1E+02 0.0025 29.8 5.4 65 42-116 65-130 (587)
84 TIGR01753 flav_short flavodoxi 28.3 2.5E+02 0.0053 20.8 6.4 76 100-185 12-93 (140)
85 PRK13195 pyrrolidone-carboxyla 28.2 3.2E+02 0.0068 23.3 7.4 95 41-139 49-158 (222)
86 PF01488 Shikimate_DH: Shikima 28.2 15 0.00032 28.3 -0.7 19 167-185 7-25 (135)
87 TIGR03619 F420_Rv2161c probabl 27.6 3E+02 0.0064 23.4 7.2 54 131-184 46-102 (246)
88 COG0673 MviM Predicted dehydro 27.6 32 0.00069 30.0 1.3 64 42-116 56-119 (342)
89 cd07408 MPP_SA0022_N Staphyloc 27.4 83 0.0018 26.8 3.8 27 39-66 156-183 (257)
90 TIGR00504 pyro_pdase pyrogluta 27.4 3.7E+02 0.0081 22.5 7.7 110 39-152 44-166 (212)
91 cd07412 MPP_YhcR_N Bacillus su 26.6 82 0.0018 27.4 3.7 27 39-66 177-203 (288)
92 PF01075 Glyco_transf_9: Glyco 26.5 1.1E+02 0.0023 25.3 4.3 22 43-64 2-23 (247)
93 TIGR03620 F420_MSMEG_4141 prob 26.3 4.4E+02 0.0095 23.0 8.5 85 98-185 14-101 (278)
94 TIGR03858 LLM_2I7G probable ox 26.2 4.2E+02 0.0092 23.4 8.3 79 107-185 31-115 (337)
95 PRK00005 fmt methionyl-tRNA fo 25.9 39 0.00084 29.9 1.5 70 45-132 70-147 (309)
96 COG0400 Predicted esterase [Ge 25.7 1.8E+02 0.0039 24.3 5.5 106 11-139 11-118 (207)
97 PF00296 Bac_luciferase: Lucif 25.2 2.3E+02 0.0049 24.3 6.2 90 100-189 21-117 (307)
98 cd01096 Alkanal_monooxygenase 24.5 3.8E+02 0.0082 23.4 7.5 81 105-185 25-112 (315)
99 cd00491 4Oxalocrotonate_Tautom 24.4 1.3E+02 0.0027 19.0 3.4 26 145-170 1-26 (58)
100 cd02911 arch_FMN Archeal FMN-b 24.3 2E+02 0.0044 24.3 5.6 79 100-186 124-203 (233)
101 PF04918 DltD_M: DltD central 24.2 32 0.0007 27.6 0.6 24 43-68 16-39 (163)
102 PF06180 CbiK: Cobalt chelatas 24.2 1.3E+02 0.0028 26.2 4.4 30 16-52 140-169 (262)
103 PRK06756 flavodoxin; Provision 24.2 3.3E+02 0.0071 20.8 6.8 76 100-184 15-95 (148)
104 PRK13197 pyrrolidone-carboxyla 24.1 4.3E+02 0.0094 22.1 7.8 110 40-152 48-169 (215)
105 PF10035 DUF2179: Uncharacteri 24.0 93 0.002 19.9 2.7 22 41-62 28-49 (55)
106 PRK13194 pyrrolidone-carboxyla 24.0 4.2E+02 0.009 22.2 7.3 107 41-152 48-168 (208)
107 PRK13196 pyrrolidone-carboxyla 23.9 4.4E+02 0.0095 22.1 7.4 111 40-152 48-172 (211)
108 TIGR01917 gly_red_sel_B glycin 23.6 1.3E+02 0.0027 28.4 4.4 52 100-151 321-372 (431)
109 PF13812 PPR_3: Pentatricopept 23.6 1E+02 0.0022 16.7 2.6 21 97-117 13-33 (34)
110 TIGR03558 oxido_grp_1 lucifera 23.3 5.1E+02 0.011 22.7 9.4 105 106-211 24-135 (323)
111 TIGR03130 malonate_delta malon 22.7 42 0.00092 25.0 0.9 16 174-189 20-35 (98)
112 TIGR01754 flav_RNR ribonucleot 22.7 3.5E+02 0.0075 20.5 6.6 75 101-184 15-93 (140)
113 PF06792 UPF0261: Uncharacteri 22.5 1.6E+02 0.0035 27.5 4.9 54 155-214 312-369 (403)
114 PLN02757 sirohydrochlorine fer 22.4 1.7E+02 0.0037 23.3 4.4 27 19-51 15-41 (154)
115 PRK01220 malonate decarboxylas 22.4 43 0.00094 25.0 0.9 15 174-188 19-33 (99)
116 PRK00170 azoreductase; Reviewe 22.2 1.1E+02 0.0023 24.7 3.4 25 40-66 75-100 (201)
117 PRK05990 precorrin-2 C(20)-met 22.2 4.8E+02 0.01 22.0 7.7 23 163-185 87-111 (241)
118 TIGR03567 FMN_reduc_SsuE FMN r 21.9 1.1E+02 0.0024 24.3 3.3 21 41-63 55-75 (171)
119 PRK02289 4-oxalocrotonate taut 21.8 1.5E+02 0.0033 19.3 3.5 27 144-170 1-27 (60)
120 cd07491 Peptidases_S8_7 Peptid 21.6 1.1E+02 0.0023 26.1 3.4 45 142-186 101-148 (247)
121 TIGR00639 PurN phosphoribosylg 21.6 60 0.0013 26.8 1.7 20 44-63 70-89 (190)
122 PRK05782 bifunctional sirohydr 21.4 1.7E+02 0.0036 26.6 4.7 30 16-51 5-34 (335)
123 PRK00745 4-oxalocrotonate taut 21.3 1.5E+02 0.0033 19.0 3.4 27 144-170 1-27 (62)
124 PRK13523 NADPH dehydrogenase N 21.3 2.6E+02 0.0057 25.1 5.9 30 36-65 138-167 (337)
125 PRK01964 4-oxalocrotonate taut 21.3 1.4E+02 0.0031 19.5 3.3 27 144-170 1-27 (64)
126 PF06925 MGDG_synth: Monogalac 21.2 97 0.0021 24.5 2.9 20 41-60 77-96 (169)
127 PF02684 LpxB: Lipid-A-disacch 21.0 1.3E+02 0.0028 27.6 4.0 25 40-64 69-94 (373)
128 PRK06988 putative formyltransf 20.8 56 0.0012 29.1 1.5 69 45-131 69-145 (312)
129 COG2257 Uncharacterized homolo 20.5 1.1E+02 0.0024 22.5 2.7 26 96-122 26-51 (92)
130 PRK02103 malonate decarboxylas 20.5 50 0.0011 25.0 0.9 15 174-188 22-36 (105)
131 PRK02220 4-oxalocrotonate taut 20.2 1.7E+02 0.0037 18.7 3.4 27 144-170 1-27 (61)
132 TIGR03751 conj_TIGR03751 conju 20.2 1.5E+02 0.0033 22.8 3.5 53 40-100 61-114 (116)
No 1
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-57 Score=385.88 Aligned_cols=195 Identities=47% Similarity=0.880 Sum_probs=183.2
Q ss_pred CcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-CeEEEccCCCccCCCCCCCccccccc
Q 027965 16 SVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDF-PSVNVVQRNDTIHDFYGFPKQMYDLK 94 (216)
Q Consensus 16 ~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~-~~i~~~~~~~~~~Df~Gfp~~~~~~~ 94 (216)
..+|++|+|||||++.+ +.++++++++++++++.+.+||+|||+|+||.++. ..|++.+.++++|||+|||+++|+++
T Consensus 7 ~~~p~LflshgsP~~~~-~~n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~ 85 (268)
T COG3384 7 TMMPALFLSHGSPMLAL-EDNAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVK 85 (268)
T ss_pred hhccceeecCCCccccc-CccHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhcc
Confidence 35699999999999999 55789999999999999999999999999999987 88999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCC
Q 027965 95 YPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEG 174 (216)
Q Consensus 95 y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~r 174 (216)
|+++|+|+||++|+++|.+.|++ ... .+||+|||+|+||++|||++++||||||+++..+++.||++|++|+++++|.
T Consensus 86 Y~a~G~peLa~~i~~~l~~~~v~-a~~-~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~ 163 (268)
T COG3384 86 YPAPGSPELAQRIVELLAKLGVP-ADA-PSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEG 163 (268)
T ss_pred CCCCCCHHHHHHHHHHhcccCcc-ccC-CccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999994 333 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHH
Q 027965 175 VLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 213 (216)
Q Consensus 175 v~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~ 213 (216)
|+|||||+++|||....+.+.+.+||+.+||+|+++.|.
T Consensus 164 vlilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~ 202 (268)
T COG3384 164 VLILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVV 202 (268)
T ss_pred EEEEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHH
Confidence 999999999999999988655577999999999999996
No 2
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=100.00 E-value=3.8e-56 Score=384.17 Aligned_cols=194 Identities=58% Similarity=1.041 Sum_probs=180.9
Q ss_pred cEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCC
Q 027965 19 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP 98 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~ 98 (216)
|++|+|||+|++.+++ +...++++++++++. +||+||||||||++....|+++..++++|||+|||+++|+++|+++
T Consensus 1 p~~fi~HG~p~~~~~~-~~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~ 77 (253)
T cd07363 1 PVLFISHGSPMLALED-NPATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP 77 (253)
T ss_pred CeEEeCCCCcccccCC-ChHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence 7999999999999855 444589999999986 9999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEE
Q 027965 99 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLII 178 (216)
Q Consensus 99 gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iI 178 (216)
||++||++|++.+++.||| +....++++|||+|+||++|+|+.++||||||+|...++++||+||++|++++++||+||
T Consensus 78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii 156 (253)
T cd07363 78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII 156 (253)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence 9999999999999999996 666678999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccCC-CCCChhHHHHHHHHHHHHHcCC
Q 027965 179 GSGSATHNLRALQFES-SSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 179 aSG~lSH~l~~~~~~~-~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|||++||||...+++. .++.+|+.+||+|++++|++||
T Consensus 157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d 195 (253)
T cd07363 157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGD 195 (253)
T ss_pred ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCC
Confidence 9999999999888741 3578999999999999999986
No 3
>PRK10628 LigB family dioxygenase; Provisional
Probab=100.00 E-value=2.6e-52 Score=357.29 Aligned_cols=181 Identities=38% Similarity=0.724 Sum_probs=162.9
Q ss_pred CCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHH
Q 027965 30 LSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKD 109 (216)
Q Consensus 30 ~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~ 109 (216)
+.+ ++++++++|+++++.+ .+|++|||||+||++..++|+....++++|||+|||+++|+++|+++|+++||++|.+
T Consensus 2 ~~l-e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~~ 78 (246)
T PRK10628 2 NVL-EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVE 78 (246)
T ss_pred ccc-cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHHH
Confidence 445 4467889999999986 5899999999999999999999989999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEEEecCCcccccc
Q 027965 110 LLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRA 189 (216)
Q Consensus 110 ~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iIaSG~lSH~l~~ 189 (216)
.|++.|+. ..+.++|+|||+||||++|||++||||||||++...+++.||+||++|+++|+++|+|||||+++|||+.
T Consensus 79 ll~~~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~ 156 (246)
T PRK10628 79 LLAPVPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRT 156 (246)
T ss_pred HhhhcCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchhh
Confidence 99998872 2334599999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccc-CCCCCChhHHHHHHHHHHHHHcC
Q 027965 190 LQF-ESSSISSWALEFDNWLKDALLEG 215 (216)
Q Consensus 190 ~~~-~~~~~~~~~~~FD~~v~~~l~~g 215 (216)
..+ .+....+|+.+||+|+.++|+++
T Consensus 157 ~~~~~~~~~~~wa~~F~~wl~~~l~~~ 183 (246)
T PRK10628 157 VKWHGDSSPYPWAESFNQFVKANLTWQ 183 (246)
T ss_pred hcccCCCCCchHHHHHHHHHHHHHhcC
Confidence 653 12335689999999999999843
No 4
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=100.00 E-value=5e-51 Score=354.59 Aligned_cols=195 Identities=42% Similarity=0.817 Sum_probs=150.7
Q ss_pred cEEEEcCCCCCCCCCCC------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEEccCCCccCCCCC
Q 027965 19 DTFFISHGSPTLSIDES------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDTIHDFYG 85 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~--~~i~~~~~~~~~~Df~G 85 (216)
|++|+|||.|++..++. +.+.++++++++++++.+||+||||||||+++ . .+|+..+.++.+|||+|
T Consensus 1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g 80 (272)
T PF02900_consen 1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG 80 (272)
T ss_dssp -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence 89999998877655332 25678999999999999999999999999992 2 24666666789999999
Q ss_pred CCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC----CCCHHHHH
Q 027965 86 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM----HHTGTYHY 161 (216)
Q Consensus 86 fp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~----~~~~~~~~ 161 (216)
||++.|+++|+++||++||++|++.|+++||| ++...++++|||+|+||+||+|++++|||||++|+ ..++++||
T Consensus 81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~ 159 (272)
T PF02900_consen 81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY 159 (272)
T ss_dssp --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence 99999999999999999999999999999996 66788999999999999999999999999999998 78999999
Q ss_pred HHHHHhhccc---cCCeEEEEecCCcccccccccCCCCCC-hhHHHHHHHHHHHHHcCC
Q 027965 162 NIGKALAPLK---EEGVLIIGSGSATHNLRALQFESSSIS-SWALEFDNWLKDALLEGR 216 (216)
Q Consensus 162 ~lG~aL~~~~---d~rv~iIaSG~lSH~l~~~~~~~~~~~-~~~~~FD~~v~~~l~~g~ 216 (216)
+||++|++++ ++||+|||||++||||...++++ +. +++.+||+|++++|++||
T Consensus 160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~--~~~~~~~~fD~~i~~~l~~gd 216 (272)
T PF02900_consen 160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPGG--YDPPWAEEFDEWILDALESGD 216 (272)
T ss_dssp HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS-----CHHHHHHHHHHCCCCH-H
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccc--hhhHhHHHHHHHHHHHHHcCC
Confidence 9999999998 89999999999999999998854 34 599999999999998875
No 5
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=100.00 E-value=9.6e-48 Score=336.55 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhC
Q 027965 36 LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS 114 (216)
Q Consensus 36 ~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~ 114 (216)
+++.++++++++++++.+||+||||||||.++ ...|+..+..++.|||+|||+++|+++|+++||++||++|++.+++.
T Consensus 30 ~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~ 109 (282)
T TIGR02298 30 QGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEH 109 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHC
Confidence 46789999999999999999999999999997 57888888888999999999999999999999999999999999999
Q ss_pred CCCccc--ccCCCCcccchhhhhhhhccCCCCCeeEeeeC-CCCCHHHHHHHHHHhhcc---ccCCeEEEEecCCccccc
Q 027965 115 GIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQ-MHHTGTYHYNIGKALAPL---KEEGVLIIGSGSATHNLR 188 (216)
Q Consensus 115 g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~-~~~~~~~~~~lG~aL~~~---~d~rv~iIaSG~lSH~l~ 188 (216)
||+ +. .+.++++|||+||||+||+|+.++||||||+| ..++++++|+||++|+++ +++||+|||||+|||||.
T Consensus 110 gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~ 188 (282)
T TIGR02298 110 GVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFW 188 (282)
T ss_pred CCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecC
Confidence 995 54 45789999999999999999999999999997 567999999999999999 789999999999999998
Q ss_pred cccc-CCCCCChhHHHH----HHHHHHHHHcCC
Q 027965 189 ALQF-ESSSISSWALEF----DNWLKDALLEGR 216 (216)
Q Consensus 189 ~~~~-~~~~~~~~~~~F----D~~v~~~l~~g~ 216 (216)
..+. ...++.+|+.+| |+.+++.+++||
T Consensus 189 ~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd 221 (282)
T TIGR02298 189 DNKDLAPEGMTTIASEFNRQVDLRVLELWRERD 221 (282)
T ss_pred cccCCCcccCCchhhHHHHHHHHHHHHHHHcCC
Confidence 7651 113367887665 888888999886
No 6
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=100.00 E-value=2e-46 Score=327.81 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=174.5
Q ss_pred CcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEEccCCCccCCCCCCCccccccc
Q 027965 16 SVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFYGFPKQMYDLK 94 (216)
Q Consensus 16 ~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-~~~i~~~~~~~~~~Df~Gfp~~~~~~~ 94 (216)
+-.|++|+|||.++... ..+.+.++++++++++.+.+||+||||||||++. ...|+..+..++.|||+|||.++|+++
T Consensus 9 ~H~P~i~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~ 87 (280)
T cd07370 9 THVPTMMLSEQPGPNKG-CRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMP 87 (280)
T ss_pred CCCCeEEecCCCCCccc-hHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCC
Confidence 34488999998754432 2246789999999999888999999999999886 577878778889999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhcc--
Q 027965 95 YPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPL-- 170 (216)
Q Consensus 95 y~~~gd~~lA~~l~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~-- 170 (216)
|+++||++||++|++.+.+.|+| +. .+.++++|||+||||++|+|+.++|||||++|...+++++++||++|+++
T Consensus 88 ~~~~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~ 166 (280)
T cd07370 88 YDYAGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIA 166 (280)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 44 46679999999999999999999999999999999999999999999998
Q ss_pred -ccCCeEEEEecCCcccccccccCCC------CCChhHHHHHHHHHHHHHcCC
Q 027965 171 -KEEGVLIIGSGSATHNLRALQFESS------SISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 171 -~d~rv~iIaSG~lSH~l~~~~~~~~------~~~~~~~~FD~~v~~~l~~g~ 216 (216)
+++||+|||||||||++....+++. ...||+++||+|+++.|++||
T Consensus 167 ~~~~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD 219 (280)
T cd07370 167 ASDRRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGR 219 (280)
T ss_pred hcCCCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCC
Confidence 5679999999999999987666432 146899999999999999987
No 7
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=100.00 E-value=2e-46 Score=326.52 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=161.6
Q ss_pred ccEEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC--CCeEEEc-----cCCCccCCCCCC
Q 027965 18 MDTFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD--FPSVNVV-----QRNDTIHDFYGF 86 (216)
Q Consensus 18 ~P~~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~--~~~i~~~-----~~~~~~~Df~Gf 86 (216)
+=++|++||+|++.+.+. ..+.++++++++++++.+||+||||||||+++ .++|+.. ...+++|||+||
T Consensus 3 iv~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~ 82 (271)
T cd07373 3 IVSAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGEL 82 (271)
T ss_pred eEEEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCc
Confidence 346899999998777443 26789999999999888999999999999984 4555431 235688899998
Q ss_pred CcccccccCCCCCcHHHHHHHHHHHHhCCCCccc-ccCC-CCcccchhhhhhhh-ccCCCCCeeEeeeCCCCCHHHHHHH
Q 027965 87 PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN-EDRK-RGLDHGAWVPLMLM-YPEADIPVCQLSVQMHHTGTYHYNI 163 (216)
Q Consensus 87 p~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~-~~~~-~~lDHG~~vPL~~l-~p~~~iPVV~isi~~~~~~~~~~~l 163 (216)
|. +++||++||++|.+.++++|++ +. .+.+ +++|||+||||+|| +|+.++||||+|+|..+++++||+|
T Consensus 83 p~-------~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~l 154 (271)
T cd07373 83 PY-------DIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKL 154 (271)
T ss_pred cc-------ccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHH
Confidence 83 6899999999999999999996 65 5554 59999999999999 7789999999999988999999999
Q ss_pred HHHhhc-ccc--CCeEEEEecCCccccccccc--C-CCCCChhHHHHHHHHHHHHHcCC
Q 027965 164 GKALAP-LKE--EGVLIIGSGSATHNLRALQF--E-SSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 164 G~aL~~-~~d--~rv~iIaSG~lSH~l~~~~~--~-~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|++|++ +++ +||+|||||+|||||...++ . ..+++||+.+||+|+++.+++||
T Consensus 155 G~al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd 213 (271)
T cd07373 155 GAIAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGD 213 (271)
T ss_pred HHHHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCC
Confidence 999996 666 99999999999999976542 1 23478999999999999999986
No 8
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=100.00 E-value=4.8e-46 Score=324.32 Aligned_cols=194 Identities=24% Similarity=0.322 Sum_probs=163.5
Q ss_pred EEEEcCCCCCCCCCCC-----h----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-eEEEccCCCccCCCCCCCcc
Q 027965 20 TFFISHGSPTLSIDES-----L----PARGFLQAWQAKVFSQRPNSILVISAHWDTDFP-SVNVVQRNDTIHDFYGFPKQ 89 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~-----~----~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~-~i~~~~~~~~~~Df~Gfp~~ 89 (216)
++++|| ||+++++. + ++.++++++++++++.+||+||||||||+++.. .+.........+|++|||+.
T Consensus 3 a~~~pH--~P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~ 80 (272)
T cd07362 3 AMLAPH--VPSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL 80 (272)
T ss_pred ccccCC--CCEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence 477899 76666442 1 357899999999988999999999999999863 33333333346899999999
Q ss_pred cccccCCCCCcHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhccCCCCCeeEeeeCC-CCCHHHHHHHHHH
Q 027965 90 MYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-HHTGTYHYNIGKA 166 (216)
Q Consensus 90 ~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~-~~~~~~~~~lG~a 166 (216)
+|+++|+++||++||++|++.++++||+ +. .+.++++|||+||||+||+|+.++||||||+|. .+++++||+||++
T Consensus 81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a 159 (272)
T cd07362 81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV 159 (272)
T ss_pred hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999996 54 345799999999999999999999999999998 7899999999976
Q ss_pred hhccc---cCCeEEEEecCCcccccccccC--C-CCC-ChhHHHHHHHHHHHHHcCC
Q 027965 167 LAPLK---EEGVLIIGSGSATHNLRALQFE--S-SSI-SSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 167 L~~~~---d~rv~iIaSG~lSH~l~~~~~~--~-~~~-~~~~~~FD~~v~~~l~~g~ 216 (216)
|+++. ++||+|||||+|||||....++ | .++ .+|+++||+|+++.+++||
T Consensus 160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd 216 (272)
T cd07362 160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQ 216 (272)
T ss_pred HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCC
Confidence 65542 6999999999999999877662 1 233 5899999999999999987
No 9
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=100.00 E-value=2.5e-45 Score=319.21 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=164.0
Q ss_pred EEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEcc-CCCccCCCCCCCcccccccC
Q 027965 21 FFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKY 95 (216)
Q Consensus 21 ~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y 95 (216)
.|++||+|.+.+++. ..+.++|+++++++.+.+||+||||||||++..+.+++.. ..+..++..+|+ .+|+++|
T Consensus 3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y 81 (268)
T cd07371 3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY 81 (268)
T ss_pred eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence 578888888876442 2567899999999988899999999999999876554432 234445556885 7889999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCcccc--cCCCCcccchhhhhhhhccCCCCCeeEeeeCCC-CCHHHHHHHHHHhhcc-c
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALAPL-K 171 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~~--~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~-~~~~~~~~lG~aL~~~-~ 171 (216)
+++||++||++|.+.++++||+ +.. +.++++|||+||||+||+|+.++||||+|+|.. +++++||+||++|+++ +
T Consensus 82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~ 160 (268)
T cd07371 82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR 160 (268)
T ss_pred cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999996 653 678999999999999999999999999999875 8999999999999854 6
Q ss_pred c--CCeEEEEecCCcccccccccCC---CCCChhHHHHHHHHHHHHHcCC
Q 027965 172 E--EGVLIIGSGSATHNLRALQFES---SSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 172 d--~rv~iIaSG~lSH~l~~~~~~~---~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
+ +||+|||||+|||||...+++. .++.+++++||+++++.+++||
T Consensus 161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd 210 (268)
T cd07371 161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGD 210 (268)
T ss_pred HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCC
Confidence 6 8999999999999998766531 1356999999999999999986
No 10
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=100.00 E-value=7.5e-43 Score=301.76 Aligned_cols=186 Identities=22% Similarity=0.242 Sum_probs=156.3
Q ss_pred EEEEcCCCCCCCCCCC--hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCC
Q 027965 20 TFFISHGSPTLSIDES--LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPA 97 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~--~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~ 97 (216)
++|+|||+|++..... +++++++++++.+ ..+||+||||||||.+....+++... +.++|++|||...|+++|
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~-~~~~g~~~~p~~~~~~~~-- 76 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILT-EYLEGTLRTNKVLIRSKY-- 76 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeec-CeeeeecccCCCceEEec--
Confidence 4899999987776332 4566777775543 56899999999999987666666543 458999999999987777
Q ss_pred CCcHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhh
Q 027965 98 PGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALA 168 (216)
Q Consensus 98 ~gd~~lA~~l~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~ 168 (216)
+||++||++|.+.++++|++ +.. ...+++|||+||||+||+|. |||++|++..++++++++||++|+
T Consensus 77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~ 152 (256)
T cd07952 77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG 152 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence 69999999999999999985 432 24688999999999999985 999999976679999999999999
Q ss_pred cc---ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 169 PL---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 169 ~~---~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++ +++||+||||||||||+....+++ +++|+++||+|+++.|++||
T Consensus 153 ~~~~~~~~~vliIaSGdlSH~l~~~~p~~--~~~~a~~fD~~~~~~l~~~d 201 (256)
T cd07952 153 KALEGYEKRVAVIISADHAHTHDPDGPYG--YSPDAAEYDAAIVEAIENND 201 (256)
T ss_pred HHHHhcCCcEEEEEecCccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence 98 567999999999999998666643 57999999999999999986
No 11
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=100.00 E-value=1.7e-41 Score=295.13 Aligned_cols=182 Identities=26% Similarity=0.343 Sum_probs=148.3
Q ss_pred EEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCC-CCC----CCeEEEccCCCccCCCC--CCCc
Q 027965 20 TFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHW-DTD----FPSVNVVQRNDTIHDFY--GFPK 88 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~H~-~~~----~~~i~~~~~~~~~~Df~--Gfp~ 88 (216)
++++|| +++.-... +++.++++++++++++.+||+|||||||| .+. .+.+.++..+ ..+||+ |||+
T Consensus 7 ~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~-~~~~~~~~g~p~ 83 (268)
T cd07367 7 AAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTAD-SYTPFGDMDIPR 83 (268)
T ss_pred EEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeecc-ccccCCcCCCCc
Confidence 467899 54332111 25678999999999989999999999955 442 2445443322 234554 8886
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC----CHHHHHHHH
Q 027965 89 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYHYNIG 164 (216)
Q Consensus 89 ~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~----~~~~~~~lG 164 (216)
. .++||++||++|++.++++||| +....++++|||+||||+||+|+.++||||||+|... ++++||+||
T Consensus 84 ~------~~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG 156 (268)
T cd07367 84 E------LFPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALG 156 (268)
T ss_pred c------cCCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence 5 4699999999999999999996 7777789999999999999999999999999998765 589999999
Q ss_pred HHhhcc------ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 165 KALAPL------KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 165 ~aL~~~------~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++|+++ +++||+|||||||||||.... ..+++++||+|+++++++||
T Consensus 157 ~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd 209 (268)
T cd07367 157 KVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGN 209 (268)
T ss_pred HHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCC
Confidence 999999 789999999999999995432 23688999999999999987
No 12
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=100.00 E-value=5.6e-40 Score=288.84 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=154.6
Q ss_pred EEEEcCCCCCCCCCCC------------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCC--
Q 027965 20 TFFISHGSPTLSIDES------------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYG-- 85 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~------------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~G-- 85 (216)
++++|| .|++.+.+. ..+.++++++++++++.+||+|||+||||.++.. ..+...++..+||.+
T Consensus 6 a~~~pH-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~ 83 (294)
T cd07372 6 GFLAPH-PPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPI 83 (294)
T ss_pred EEecCC-CCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccc
Confidence 567789 454543221 1256899999999999999999999999998764 223335556677764
Q ss_pred CCcccccccCCCCCcHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhccCCCCCeeEeeeCC-------CCC
Q 027965 86 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-------HHT 156 (216)
Q Consensus 86 fp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~-------~~~ 156 (216)
+| ++|+++|+++||++||++|.+.++++||+ +. .+.++++|||+||||+||+|+.++|||+||+|. ..+
T Consensus 84 ~p-~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~ 161 (294)
T cd07372 84 FP-NLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEG 161 (294)
T ss_pred cc-cceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCC
Confidence 34 57888999999999999999999999996 54 367789999999999999999999999999853 245
Q ss_pred HHHHHHHHHHhhcc-c--cCCeEEEEecCCccccc---ccccCCC-CCCh---hHHHHHHHHHHHHHcCC
Q 027965 157 GTYHYNIGKALAPL-K--EEGVLIIGSGSATHNLR---ALQFESS-SISS---WALEFDNWLKDALLEGR 216 (216)
Q Consensus 157 ~~~~~~lG~aL~~~-~--d~rv~iIaSG~lSH~l~---~~~~~~~-~~~~---~~~~FD~~v~~~l~~g~ 216 (216)
++++|+||++|+++ + ++||+|||||||||++. ...+++. ++++ .+++||+.+++.+++||
T Consensus 162 ~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd 231 (294)
T cd07372 162 LGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGR 231 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCC
Confidence 89999999999995 3 48899999999999984 3344332 2233 89999999999999997
No 13
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=100.00 E-value=5e-40 Score=283.40 Aligned_cols=191 Identities=25% Similarity=0.318 Sum_probs=159.4
Q ss_pred EEEEcCCCCCCCCCCCh--hHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEEccCCCccCCCCCCCcccccccC
Q 027965 20 TFFISHGSPTLSIDESL--PARGFLQAWQAKVFSQRPNSILVISAHWDT--DFPSVNVVQRNDTIHDFYGFPKQMYDLKY 95 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~--~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~--~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y 95 (216)
++|+|||+|++..+... ...++++++++++.+.+||+|||+||||.. ....|+..+..++.|||. ..|+..|
T Consensus 2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~ 77 (260)
T cd07320 2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQ----WGRRPVY 77 (260)
T ss_pred CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccc----cCCCCCc
Confidence 47999999888774432 112468889988877899999999999995 445666666778888883 3566778
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCcccccCC-CCcccchhhhhhhhccC-CCCCeeEeeeCCCC-CHHHHHHHHHHhhccc-
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVNEDRK-RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH-TGTYHYNIGKALAPLK- 171 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~~~~~-~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~-~~~~~~~lG~aL~~~~- 171 (216)
++++|++||++|++.+.+ |++ +....+ +++|||+||||.||+|+ .++|||||+++... ++++|++||++|++++
T Consensus 78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~ 155 (260)
T cd07320 78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE 155 (260)
T ss_pred CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 995 554433 68999999999999998 89999999998776 8999999999999998
Q ss_pred --cCCeEEEEecCCcccccccccC-CCCCChhHHHHHHHHHHHHHcCC
Q 027965 172 --EEGVLIIGSGSATHNLRALQFE-SSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 172 --d~rv~iIaSG~lSH~l~~~~~~-~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++||+||||||||||+...++. .....+|+++||+++++.|++||
T Consensus 156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d 203 (260)
T cd07320 156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELD 203 (260)
T ss_pred hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCC
Confidence 7899999999999999877641 12356899999999999999986
No 14
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.6e-39 Score=283.75 Aligned_cols=181 Identities=20% Similarity=0.342 Sum_probs=148.9
Q ss_pred EEEcCCCCCCCCCCC---------hhHHHHHHHHHHHhhcCCCCEEEEEe-CC----CCCCCCeEEEccCCCccCC--CC
Q 027965 21 FFISHGSPTLSIDES---------LPARGFLQAWQAKVFSQRPNSILVIS-AH----WDTDFPSVNVVQRNDTIHD--FY 84 (216)
Q Consensus 21 ~fisHG~P~~~~~~~---------~~~~~~l~~l~~~l~~~~Pd~IVviS-~H----~~~~~~~i~~~~~~~~~~D--f~ 84 (216)
+++|| .|.+-..+. .+..++++++++++++.+||+||||| +| |....++|.++..++..+| ++
T Consensus 8 ~~~sH-vP~ig~~~~~~~~~t~~~~~~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~ 86 (276)
T cd07949 8 ITTSH-VPAIGGAIAKGLQQTPYWKPFFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGW 86 (276)
T ss_pred hcCCC-CCcccccccccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCccccc
Confidence 56799 665542111 13368999999999999999999999 59 5555677877765655555 35
Q ss_pred CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCC--CCCeeEeeeCCCC----CHH
Q 027965 85 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA--DIPVCQLSVQMHH----TGT 158 (216)
Q Consensus 85 Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~--~iPVV~isi~~~~----~~~ 158 (216)
|+|+ +|+++||++||++|.+.+.++||| +....++++|||+||||+||+|+. ++|||||++|... +++
T Consensus 87 g~~~-----~~~~~g~~~LA~~i~~~~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~ 160 (276)
T cd07949 87 GIPA-----LAPFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPK 160 (276)
T ss_pred CCCC-----CCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHH
Confidence 7776 468999999999999999999996 777788999999999999999985 5999999998765 889
Q ss_pred HHHHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHH
Q 027965 159 YHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 213 (216)
Q Consensus 159 ~~~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~ 213 (216)
+||+||++|+++ +++||+|||||||||||.... + ..|+++||+|+++.|+
T Consensus 161 ~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~-~----g~~~~~fD~~~~~~l~ 215 (276)
T cd07949 161 RCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGER-A----GFINKDFDRYCLDKMV 215 (276)
T ss_pred HHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-c----ccchHHHHHHHHHHHh
Confidence 999999999998 457999999999999995422 2 2468999999999998
No 15
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=100.00 E-value=3.7e-39 Score=280.40 Aligned_cols=184 Identities=23% Similarity=0.322 Sum_probs=150.0
Q ss_pred EEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CC--eEEEccCCCccCCCC
Q 027965 20 TFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FP--SVNVVQRNDTIHDFY 84 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~~--~i~~~~~~~~~~Df~ 84 (216)
++++|| ||+++++. +++.++|+++++++++.+||+||||||||.+. .+ +|++.+.. ..++.
T Consensus 5 ~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~--~~~~~ 80 (271)
T cd07359 5 GIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSY--EGPDE 80 (271)
T ss_pred EEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccc--cCCcc
Confidence 467899 77665332 25678999999999989999999999965443 33 44443333 22222
Q ss_pred CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC----CHHHH
Q 027965 85 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYH 160 (216)
Q Consensus 85 Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~----~~~~~ 160 (216)
++ ++...|+++||++||++|.+.+.+.||| ++.+.++++|||+||||+||+|+.++|||||++|... ++++|
T Consensus 81 ~~---~~~~~~~~~~d~elA~~i~~~~~~~g~~-~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~ 156 (271)
T cd07359 81 GW---LGIPRAPVPGDADLARHLLAGLVEDGFD-VAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRC 156 (271)
T ss_pred cc---ccCcCCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHH
Confidence 22 4567889999999999999999999995 7777789999999999999999999999999997654 78999
Q ss_pred HHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 161 YNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 161 ~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|+||++|+++ +++||+||||||||||+.... +.+++++||++++++|++||
T Consensus 157 ~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~-----~g~~~~~fD~~~~~~l~~~d 212 (271)
T cd07359 157 YALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPR-----HGEINEEFDREFLDLLERGD 212 (271)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCcc-----ccccCHHHHHHHHHHHHhCC
Confidence 9999999997 578999999999999997642 22679999999999999986
No 16
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=100.00 E-value=8.4e-39 Score=279.33 Aligned_cols=184 Identities=23% Similarity=0.338 Sum_probs=149.8
Q ss_pred EEEcCCCCCCCC---CC--C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEEccCCCccCCCCCC
Q 027965 21 FFISHGSPTLSI---DE--S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDTIHDFYGF 86 (216)
Q Consensus 21 ~fisHG~P~~~~---~~--~----~~~~~~l~~l~~~l~~~~Pd~IVvi-S~H~~~~----~~~i~~~~~~~~~~Df~Gf 86 (216)
+.+|| .|.+.. .+ . ..+.++++++++++++.+||+|||| |+|...+ .|.|.++..++..+++++|
T Consensus 8 ~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~ 86 (277)
T cd07364 8 VGTSH-VPAIGAAMDNGKTDEPYWKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGY 86 (277)
T ss_pred hcCCC-CccccccccCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCcccc
Confidence 45678 665554 21 1 2567899999999999999999999 6786543 3577776666667676666
Q ss_pred CcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCC----CCHHH
Q 027965 87 PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH----HTGTY 159 (216)
Q Consensus 87 p~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~----~~~~~ 159 (216)
...-.. +++||++||++|.+.+.++||| +....++++|||+|+||+||+|+.+ +||||+|+|.. .++++
T Consensus 87 g~~~~~---~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~ 162 (277)
T cd07364 87 GPRPVP---DVQGHPDLAWHIAQSLILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKR 162 (277)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHHHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHH
Confidence 543222 6799999999999999999996 7777789999999999999999764 78999999876 68999
Q ss_pred HHHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 160 HYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 160 ~~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
||+||++|+++ +++||+|||||+|||||.... ++ .++++||+|+++++++
T Consensus 163 ~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~-~g----~~~~eFD~~i~~~l~~ 217 (277)
T cd07364 163 CFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGER-AG----LINKEFDNRFLDKLIS 217 (277)
T ss_pred HHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCC-cc----CchHHHHHHHHHHHHh
Confidence 99999999999 679999999999999997653 22 3599999999999985
No 17
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2e-38 Score=277.47 Aligned_cols=184 Identities=21% Similarity=0.322 Sum_probs=148.5
Q ss_pred EEEEcCCCCCCCCCC-C---------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEEccCCCccCCCC
Q 027965 20 TFFISHGSPTLSIDE-S---------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDTIHDFY 84 (216)
Q Consensus 20 ~~fisHG~P~~~~~~-~---------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~H~~~~----~~~i~~~~~~~~~~Df~ 84 (216)
++.+|| ||++..+ + +++.++++++++++++.+||+|||| |+|+..+ .+.|.++...+...++.
T Consensus 7 a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~ 84 (284)
T PRK13366 7 SVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADE 84 (284)
T ss_pred EeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCccc
Confidence 467899 6666542 1 2667899999999999999999999 7898654 34666665555545544
Q ss_pred CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCCC----CH
Q 027965 85 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH----TG 157 (216)
Q Consensus 85 Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~~----~~ 157 (216)
+|... ++. +++||++||++|.+.+.++||| +....++++|||+|+||+||+|+.+ +||||||+|... ++
T Consensus 85 ~~g~~--~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~ 160 (284)
T PRK13366 85 GWGPR--PVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSG 160 (284)
T ss_pred ccCCC--CCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCH
Confidence 33321 244 7799999999999999999996 7777789999999999999999754 899999999876 89
Q ss_pred HHHHHHHHHhhccc-----cCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 158 TYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 158 ~~~~~lG~aL~~~~-----d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
++||+||++|++++ ++||+|||||+|||||...+ +| +. +++||+++++.+++
T Consensus 161 ~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~-~g--~~--~~~fD~~~l~~l~~ 217 (284)
T PRK13366 161 RRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPR-AG--LI--NREWDNAFLDRLIA 217 (284)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCC-CC--CC--cHHHHHHHHHHHhc
Confidence 99999999999993 68999999999999998432 23 22 79999999999975
No 18
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.8e-38 Score=277.37 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=147.8
Q ss_pred EEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCC----CCeEEEccCCCccCCCCCC
Q 027965 20 TFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVISA-HWDTD----FPSVNVVQRNDTIHDFYGF 86 (216)
Q Consensus 20 ~~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~~----~~~i~~~~~~~~~~Df~Gf 86 (216)
++++|| ||+++ ++. ..+.++++++++++++.+||+|||||+ ||..+ .+++.++... ..+||..|
T Consensus 7 a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~g~~~~~ 83 (277)
T cd07368 7 GFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VDGPYDPL 83 (277)
T ss_pred EeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-ccCCcccc
Confidence 578899 66664 331 266789999999999999999999985 77653 3455555433 45565433
Q ss_pred CcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-----CCCCeeEeeeCC----CCCH
Q 027965 87 PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQM----HHTG 157 (216)
Q Consensus 87 p~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-----~~iPVV~isi~~----~~~~ 157 (216)
+... +..++|+++||++|.+.+.++||| +..+.++++|||+|+||+||+|+ .++|+|||++|. ..++
T Consensus 84 ~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~ 159 (277)
T cd07368 84 PGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITS 159 (277)
T ss_pred CCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCH
Confidence 3321 225799999999999999999996 77777899999999999999985 478888888753 5678
Q ss_pred HHHHHHHHHhhc-----cccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 158 TYHYNIGKALAP-----LKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 158 ~~~~~lG~aL~~-----~~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++||+||++|++ .+++||+|||||+|||||.... ..+|+++||+|+++.+++||
T Consensus 160 ~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~-----~~~~~~~fD~~~~~~l~~gd 218 (277)
T cd07368 160 WRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAE-----MGAVNEGFDREIMKLVAQGD 218 (277)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCcc-----ccccCHHHHHHHHHHHHcCC
Confidence 999999999999 4679999999999999996543 23789999999999999986
No 19
>PRK03881 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=294.38 Aligned_cols=190 Identities=23% Similarity=0.341 Sum_probs=166.9
Q ss_pred cEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCccc
Q 027965 19 DTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQM 90 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~ 90 (216)
=++++|| ||+++++. +++.++++++++++.+.+||+|||+||||......+.+...+...+||+||+.
T Consensus 5 ~a~~~PH--~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~-- 80 (467)
T PRK03881 5 GAYLMPH--PPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA-- 80 (467)
T ss_pred EEEEcCC--CCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC--
Confidence 3678899 67777642 36789999999999888999999999999987778888778889999998874
Q ss_pred ccccCCCCCcHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhccC-CCCCeeEeeeCCCCCHHHH
Q 027965 91 YDLKYPAPGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYH 160 (216)
Q Consensus 91 ~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~~~~~~ 160 (216)
|+++|+++||++||++|++.+++.||+ +.. +.++++|||+||||.||++. .++|||||++ ...++++|
T Consensus 81 ~~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~-~~~~~~~~ 158 (467)
T PRK03881 81 PEVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY-GGLSPEEL 158 (467)
T ss_pred CCccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC-CCCCHHHH
Confidence 789999999999999999999999996 554 56789999999999999998 7999999999 57899999
Q ss_pred HHHHHHhhcccc---CCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 161 YNIGKALAPLKE---EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 161 ~~lG~aL~~~~d---~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++||++|+++++ +||+|||||||||++....++| +.+++.+||++++++|++||
T Consensus 159 ~~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~g--~~~~a~~fD~~ii~~i~~gD 215 (467)
T PRK03881 159 YKFGMAIREAAEELGRKVVLIASGDLSHRLTPDGPYG--YAPEGPEFDRAIVELLSKGD 215 (467)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence 999999999864 5999999999999997665543 67899999999999999987
No 20
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=100.00 E-value=4.5e-38 Score=271.27 Aligned_cols=187 Identities=24% Similarity=0.333 Sum_probs=162.2
Q ss_pred EEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccc
Q 027965 22 FISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDL 93 (216)
Q Consensus 22 fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~ 93 (216)
|+|| ||+++++. .+++++++++++.+.+.+||+|||+||||.+....|++...++..+||+||+ .|++
T Consensus 1 ~~ph--~p~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~ 76 (256)
T cd07951 1 LVPH--PPLLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV 76 (256)
T ss_pred CCCC--CCcccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence 4689 66665332 2567899999999988899999999999999888898888889999999997 4889
Q ss_pred cCCCCCcHHHHHHHHHHHHhCCCCcccccCC--CCcccchhhhhhhhccC-CCCCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 94 KYPAPGAPELAKRVKDLLKASGIKHVNEDRK--RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 94 ~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~--~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
+|++++|++||++|.+.+++.|++ +....+ +++|||+|+||.||++. .++|||||+++ ..+++++++||++|+++
T Consensus 77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~ 154 (256)
T cd07951 77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA 154 (256)
T ss_pred eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999999999999999999995 554433 68999999999999998 79999999994 67999999999999998
Q ss_pred ---ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 171 ---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 171 ---~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
+++||+||||||+|||+...+++ ...+++.+||++++++|++||
T Consensus 155 ~~~~~~~vlii~SgdlsH~l~~~~p~--~~~~~a~~~D~~~~~~l~~~D 201 (256)
T cd07951 155 AEELGRRVALIASGDLSHRLTEDAPG--GYDPRGPEFDAAIAEALAKGD 201 (256)
T ss_pred HHhcCCcEEEEEecccccccCCCCCC--CCCcchHHHHHHHHHHHHcCC
Confidence 46899999999999999766553 246789999999999999986
No 21
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=7.6e-38 Score=272.16 Aligned_cols=182 Identities=23% Similarity=0.349 Sum_probs=150.6
Q ss_pred EEEEcCCCCCCCC-CCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEEccCCCccCCCCCCCc
Q 027965 20 TFFISHGSPTLSI-DES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDTIHDFYGFPK 88 (216)
Q Consensus 20 ~~fisHG~P~~~~-~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~--~~i~~~~~~~~~~Df~Gfp~ 88 (216)
++++|| +.+.- ++. .++.++++++++++.+.+||+|||+||||.+. . .+|+........+|| |||+
T Consensus 7 ~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd~-g~~~ 83 (269)
T PRK13358 7 AFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGDM-DIPR 83 (269)
T ss_pred ehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCcccc-CCCc
Confidence 467899 42211 111 36788999999999888999999999999754 2 345555555678888 9998
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC----CHHHHHHHH
Q 027965 89 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYHYNIG 164 (216)
Q Consensus 89 ~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~----~~~~~~~lG 164 (216)
+ .++||++||++|.+.+.+.|+| ++...++++|||+|+||++|+|+.++|||||++|+.. +.++||+||
T Consensus 84 ~------~~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG 156 (269)
T PRK13358 84 E------LVPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAKRCAALG 156 (269)
T ss_pred c------cCCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence 7 4699999999999999999996 6666789999999999999999999999999998644 459999999
Q ss_pred HHhhccc------cCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 165 KALAPLK------EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 165 ~aL~~~~------d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++|+++. ++||+|||||||||++...+ +.+++++||+|+++++++||
T Consensus 157 ~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D 209 (269)
T PRK13358 157 EVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGD 209 (269)
T ss_pred HHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCC
Confidence 9999974 57999999999999997432 34789999999999999987
No 22
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=9.6e-38 Score=277.79 Aligned_cols=191 Identities=16% Similarity=0.257 Sum_probs=156.0
Q ss_pred EEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCC----CCCeEEEccCCCccCCCC--
Q 027965 20 TFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDT----DFPSVNVVQRNDTIHDFY-- 84 (216)
Q Consensus 20 ~~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~H~~~----~~~~i~~~~~~~~~~Df~-- 84 (216)
++++|| ||+++ ++. ..+.++++++++++++.+||+|||| |+||.. +.+.|.++..+...+||.
T Consensus 7 a~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~ 84 (329)
T cd07369 7 AIGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQL 84 (329)
T ss_pred eeecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhc
Confidence 367899 76665 442 2677899999999999999999997 889973 335666665556556643
Q ss_pred --CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC----CCHH
Q 027965 85 --GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGT 158 (216)
Q Consensus 85 --Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~ 158 (216)
+|+-. .+|+++||++||++|.+.+.+.||| +....++.+|||+++||++|+|+.++|||||++|.. ++++
T Consensus 85 ~~~~~~~---~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~p~~~~~ 160 (329)
T cd07369 85 MEALRVP---KKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSPPLMKYS 160 (329)
T ss_pred cccCCCC---cccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCCCCCCHH
Confidence 22211 3578899999999999999999996 777778899999999999999988999999999877 7899
Q ss_pred HHHHHHHHhhccc-----cCCeEEEEecCCcc-----------------cccccccCCCCC-------------------
Q 027965 159 YHYNIGKALAPLK-----EEGVLIIGSGSATH-----------------NLRALQFESSSI------------------- 197 (216)
Q Consensus 159 ~~~~lG~aL~~~~-----d~rv~iIaSG~lSH-----------------~l~~~~~~~~~~------------------- 197 (216)
+||+||++|++++ |+||+||||||||| +|.+.+++|+..
T Consensus 161 r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 240 (329)
T cd07369 161 RAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAAYEIEMA 240 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhhhhhhhh
Confidence 9999999999986 48999999999999 666666655311
Q ss_pred ----------Ch-hHHHHHHHHHHHHHcCC
Q 027965 198 ----------SS-WALEFDNWLKDALLEGR 216 (216)
Q Consensus 198 ----------~~-~~~~FD~~v~~~l~~g~ 216 (216)
+| .+++||+++++++++||
T Consensus 241 ~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd 270 (329)
T cd07369 241 KKNQWPLNSKHPLVNAAWDRKFLKAYCRGD 270 (329)
T ss_pred hhhcccccccCCccCHHHHHHHHHHHHcCC
Confidence 56 49999999999999987
No 23
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=100.00 E-value=7.6e-38 Score=273.37 Aligned_cols=182 Identities=21% Similarity=0.302 Sum_probs=142.7
Q ss_pred EEEcCCCCCCCCCCC----------hhHHHHHHHHHHHhhcCCCCEEEEEeCCC-CCC----CCeEEEccCCCc-cCCCC
Q 027965 21 FFISHGSPTLSIDES----------LPARGFLQAWQAKVFSQRPNSILVISAHW-DTD----FPSVNVVQRNDT-IHDFY 84 (216)
Q Consensus 21 ~fisHG~P~~~~~~~----------~~~~~~l~~l~~~l~~~~Pd~IVviS~H~-~~~----~~~i~~~~~~~~-~~Df~ 84 (216)
+++|| ||++.... +++.++++++++++++.+||+|||+|+|| ... .+.|.++...+. .+|+.
T Consensus 8 ~~~sH--~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~ 85 (277)
T cd07950 8 IGSSH--TPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEG 85 (277)
T ss_pred hhcCC--CCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccc
Confidence 56799 66554211 26778999999999999999999999544 332 245655544443 66777
Q ss_pred CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCC---C-CH
Q 027965 85 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH---H-TG 157 (216)
Q Consensus 85 Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~---~-~~ 157 (216)
++|+.. |+++||++||++|.+.+.+.||| +....++++|||+||||+||+|+.+ +|||||++|.. + ++
T Consensus 86 ~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~ 160 (277)
T cd07950 86 GGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTA 160 (277)
T ss_pred cCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCH
Confidence 788765 48899999999999999999996 7777889999999999999999866 78999998743 3 79
Q ss_pred HHHHHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 158 TYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 158 ~~~~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
++||+||++|+++ +|+||+|||||||||||. ..++|. .+ ++||+++++++++
T Consensus 161 ~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~-~~~~g~--~~--~~~D~~f~~~l~~ 217 (277)
T cd07950 161 RRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVH-GERAGF--NN--TEWDMEFLDLIEN 217 (277)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCC-CCCCCC--CC--HHHHHHHHHHHHh
Confidence 9999999999999 578999999999999997 334332 22 5566666666653
No 24
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=2.4e-37 Score=281.53 Aligned_cols=185 Identities=24% Similarity=0.341 Sum_probs=148.7
Q ss_pred ccEEEEcCCCCCCCC--CC--C-----hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEEccCCCcc-CC
Q 027965 18 MDTFFISHGSPTLSI--DE--S-----LPARGFLQAWQAKVFSQRPNSILVISA-HWDT----DFPSVNVVQRNDTI-HD 82 (216)
Q Consensus 18 ~P~~fisHG~P~~~~--~~--~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~----~~~~i~~~~~~~~~-~D 82 (216)
+..+..|| +|.+-. +. . .+..++++++++++++.+||+||||++ |... ..++|.++...+.. +|
T Consensus 152 v~g~~tSH-~P~ig~A~d~~~~~~~~~~~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~p~d 230 (444)
T PRK13372 152 SAALFSSH-VPAIGAAIDLGKTEEDYWKKLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFPPAD 230 (444)
T ss_pred eeeeccCc-ccccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccCCCc
Confidence 34567799 665443 11 1 255688999999999999999999998 5433 23566555444433 66
Q ss_pred CC-CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCC---CCCeeEeeeCCCC---
Q 027965 83 FY-GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA---DIPVCQLSVQMHH--- 155 (216)
Q Consensus 83 f~-Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~---~iPVV~isi~~~~--- 155 (216)
++ | |... .++||+++||++|++.|.++||| ++.+.++++|||+|+||.+|+|+. ++||||||+|...
T Consensus 231 ~g~G-~~~v----~~~pG~peLA~~I~~~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~~Pl 304 (444)
T PRK13372 231 EGWG-PRPV----PDVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQYPV 304 (444)
T ss_pred ccCC-CCCC----CCCCCCHHHHHHHHHHHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCCCCC
Confidence 53 4 2221 27899999999999999999997 778889999999999999999995 4999999999884
Q ss_pred -CHHHHHHHHHHhhcccc------CCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 156 -TGTYHYNIGKALAPLKE------EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 156 -~~~~~~~lG~aL~~~~d------~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
++++||+||++|+++++ +||+|||||+|||||...+. ..|+++||+|+++.|++
T Consensus 305 ps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~ 365 (444)
T PRK13372 305 PSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA 365 (444)
T ss_pred CCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh
Confidence 89999999999999987 99999999999999985332 26899999999999985
No 25
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=3e-37 Score=269.47 Aligned_cols=183 Identities=21% Similarity=0.305 Sum_probs=150.5
Q ss_pred EEEEcCCCCCCCCCC------C---hhHHHHHHHHHHHhhcCCCCEEEEEe-CCCCC----CCCeEEEccCCCccCCCC-
Q 027965 20 TFFISHGSPTLSIDE------S---LPARGFLQAWQAKVFSQRPNSILVIS-AHWDT----DFPSVNVVQRNDTIHDFY- 84 (216)
Q Consensus 20 ~~fisHG~P~~~~~~------~---~~~~~~l~~l~~~l~~~~Pd~IVviS-~H~~~----~~~~i~~~~~~~~~~Df~- 84 (216)
++++|| .|.+--.+ + .+..++++++++++++.+||+||||| +|... ..++|.++...+..+|+.
T Consensus 7 ~~~~sH-~P~vg~~~~~~~~~~~~~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~ 85 (278)
T PRK13364 7 GITTSH-VPAIGGAIAKGLQQDPYWKPFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEG 85 (278)
T ss_pred eeecCC-CCccccccccccccChhHHHHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhh
Confidence 367899 66443111 1 13378999999999999999999999 79755 245787777777777754
Q ss_pred -CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC--CCeeEeeeCCCC----CH
Q 027965 85 -GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD--IPVCQLSVQMHH----TG 157 (216)
Q Consensus 85 -Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~--iPVV~isi~~~~----~~ 157 (216)
|.|.. .+++||++||++|.+.+.+.||| +....++++|||+|+||+||+|+.+ +|||||++|+.. ++
T Consensus 86 ~g~~~~-----~~~~~~~~lA~~i~~~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~ 159 (278)
T PRK13364 86 WGIPTL-----APFKGDTELSWHIIESLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSA 159 (278)
T ss_pred cCCCCC-----CCCCCCHHHHHHHHHHHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCH
Confidence 44443 37899999999999999999996 7777789999999999999999876 889999998765 79
Q ss_pred HHHHHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 158 TYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 158 ~~~~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
++||+||++|+++ +++||+|||||||||||. ..++| +. +++||+++++.+++
T Consensus 160 ~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~-~~p~G--~~--~~~fD~~~l~~l~~ 216 (278)
T PRK13364 160 RRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLD-GERAG--FI--NKDFDLQCMDSLVS 216 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCC-CCCcc--cC--CHHHHHHHHHHHHh
Confidence 9999999999999 569999999999999998 55654 33 49999999999986
No 26
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=1.5e-36 Score=275.91 Aligned_cols=181 Identities=22% Similarity=0.381 Sum_probs=141.9
Q ss_pred EEEcCCCCCCCCC----CC-----hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCC----CCeE--EEccCCCccCCCC
Q 027965 21 FFISHGSPTLSID----ES-----LPARGFLQAWQAKVFSQRPNSILVISA-HWDTD----FPSV--NVVQRNDTIHDFY 84 (216)
Q Consensus 21 ~fisHG~P~~~~~----~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~~----~~~i--~~~~~~~~~~Df~ 84 (216)
++.|| +|.+-.. .. .+..++++.+++++++.+||+||+|++ |...+ .++| ++++.. ..|||+
T Consensus 8 ~~~SH-~P~ig~a~~~~~~~~~~~~~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~-~~~D~~ 85 (420)
T PRK13367 8 IAVSH-TPTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY-AVADEG 85 (420)
T ss_pred hcCCC-CcccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEecccc-cccccC
Confidence 55788 6644332 11 155689999999999999999999998 54332 3444 444433 379999
Q ss_pred CCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCC----CCH
Q 027965 85 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH----HTG 157 (216)
Q Consensus 85 Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~----~~~ 157 (216)
|||+++| +++|+++||++|++.|.++||| ++.+.++++|||+||||++|+|+.+ +|||||++|.. .++
T Consensus 86 g~P~~ly----~~~G~peLA~~I~~~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq~Plps~ 160 (420)
T PRK13367 86 GGPRDLP----PVRGHAALSRHIGASLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQFPIPSA 160 (420)
T ss_pred CCccccC----CCCCCHHHHHHHHHHHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeeceeecCCCCH
Confidence 9999875 9999999999999999999997 7888899999999999999999865 66999998753 279
Q ss_pred HHHHHHHHHhhccc-----cCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHH
Q 027965 158 TYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLK 209 (216)
Q Consensus 158 ~~~~~lG~aL~~~~-----d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~ 209 (216)
++||+||++|++++ |+||+|||||+|||||.... .|....+|+.+|.+|+.
T Consensus 161 ~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~-~g~~n~~wD~~Fld~L~ 216 (420)
T PRK13367 161 RRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGER-CGFNNPEWDAQFLDLLV 216 (420)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-CCCCCHHHHHHHHHHHH
Confidence 99999999999995 58999999999999996443 23323345555555554
No 27
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2.1e-36 Score=264.45 Aligned_cols=182 Identities=20% Similarity=0.310 Sum_probs=139.3
Q ss_pred EEEcCCCCCCCCCC-----C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEEccCCCc-cCCCCC
Q 027965 21 FFISHGSPTLSIDE-----S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDT-IHDFYG 85 (216)
Q Consensus 21 ~fisHG~P~~~~~~-----~----~~~~~~l~~l~~~l~~~~Pd~IVvi-S~H~~~~----~~~i~~~~~~~~-~~Df~G 85 (216)
+++|| .|.+...+ . .++.++++++++++++.+||+|||| |+|...+ .+.|.++..... ..|| |
T Consensus 8 ~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~-g 85 (279)
T PRK13365 8 IGTSH-VPTIGVAYDKGKQQDPAWKPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADE-G 85 (279)
T ss_pred hcCCC-CcccccccccCcccchHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEeccccccccc-c
Confidence 55788 66555411 1 3677899999999999999999999 5564332 345655443333 4444 2
Q ss_pred CCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCCC----CHH
Q 027965 86 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH----TGT 158 (216)
Q Consensus 86 fp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~~----~~~ 158 (216)
.+..- ..+++||++||++|.+.+.+.||| +....++++|||+||||+||+|+.+ +|||||++|+.. +++
T Consensus 86 ~~~~~---~~~~~g~~eLA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~ 161 (279)
T PRK13365 86 AGLRP---LPPIRGDVQLQAHIAECLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTAR 161 (279)
T ss_pred cCCCC---CCCCCCCHHHHHHHHHHHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHH
Confidence 22221 126799999999999999999996 7777789999999999999999766 999999998543 789
Q ss_pred HHHHHHHHhhccc-----cCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHH
Q 027965 159 YHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 213 (216)
Q Consensus 159 ~~~~lG~aL~~~~-----d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~ 213 (216)
+||+||++|++++ |+||+|||||||||||... ++| +.+ ++||++++++++
T Consensus 162 ~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~-~~g--~~~--~~~D~~f~~~l~ 216 (279)
T PRK13365 162 RCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGE-RSG--FNN--TEWDMEFLDRFQ 216 (279)
T ss_pred HHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCC-Ccc--CCC--HHHHHHHHHHHh
Confidence 9999999999984 6899999999999999963 333 332 778888888876
No 28
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=100.00 E-value=6.6e-36 Score=264.89 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=156.0
Q ss_pred EEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEEccCCCccCCCCCCCcc
Q 027965 20 TFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPKQ 89 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~~~i~~~~~~~~~~Df~Gfp~~ 89 (216)
.++.|| +|.+-.++. ....++++++++++++.+||+|||+||||.+. .++|.++......+||++|+.
T Consensus 5 ~~~~sH-~P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g- 82 (313)
T PRK13370 5 LVCLSH-SPLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAG- 82 (313)
T ss_pred eeecCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCC-
Confidence 467899 776655332 25568999999999999999999999977664 467888777788999998765
Q ss_pred cccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCC----CCCHHHHHHHH
Q 027965 90 MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQM----HHTGTYHYNIG 164 (216)
Q Consensus 90 ~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~----~~~~~~~~~lG 164 (216)
++++|++||++|.+.+.+.||| +....++++|||+|+||+||+++ .++|||||++|+ ..++++||+||
T Consensus 83 ------~~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG 155 (313)
T PRK13370 83 ------PLPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLG 155 (313)
T ss_pred ------CCCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHH
Confidence 4688999999999999999997 66677899999999999999987 459999999985 46789999999
Q ss_pred HHhhccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCChhHHH
Q 027965 165 KALAPLK---EEGVLIIGSGSATHNLRALQ--------------------------------------FESSSISSWALE 203 (216)
Q Consensus 165 ~aL~~~~---d~rv~iIaSG~lSH~l~~~~--------------------------------------~~~~~~~~~~~~ 203 (216)
++|+++. ++||+|||||||||++.... .+.+++.|.+++
T Consensus 156 ~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~ 235 (313)
T PRK13370 156 EAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPE 235 (313)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHH
Confidence 9999873 68999999999999831110 112447899999
Q ss_pred HHHHHHHHHHcCC
Q 027965 204 FDNWLKDALLEGR 216 (216)
Q Consensus 204 FD~~v~~~l~~g~ 216 (216)
||+++++.+++||
T Consensus 236 ~D~~~l~~l~~gd 248 (313)
T PRK13370 236 WDRAFLDLLESGD 248 (313)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999987
No 29
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=100.00 E-value=1.3e-35 Score=262.70 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=155.0
Q ss_pred EEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEEccCCCccCCCCCCCcc
Q 027965 20 TFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPKQ 89 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~~~i~~~~~~~~~~Df~Gfp~~ 89 (216)
+++.|| +|.+....+ .+..++++++++++++.+||+||||||||... .++|+++......+||.+|+.
T Consensus 5 ~~~~sH-~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g- 82 (310)
T cd07365 5 LICMSH-SPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAG- 82 (310)
T ss_pred eeeeCC-CcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCC-
Confidence 577899 775543222 25568999999999999999999999998773 357877777788999998776
Q ss_pred cccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCC----CCHHHHHHHH
Q 027965 90 MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMH----HTGTYHYNIG 164 (216)
Q Consensus 90 ~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~----~~~~~~~~lG 164 (216)
+.++|++||++|.+.+.+.||| ++...++++|||+||||+||++. .++|||||++|.. .++++|++||
T Consensus 83 ------~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~lG 155 (310)
T cd07365 83 ------PLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARALG 155 (310)
T ss_pred ------CCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHHH
Confidence 3568999999999999999996 77777899999999999999987 4699999999764 6789999999
Q ss_pred HHhhccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCChhHHH
Q 027965 165 KALAPLK---EEGVLIIGSGSATHNLRALQ--------------------------------------FESSSISSWALE 203 (216)
Q Consensus 165 ~aL~~~~---d~rv~iIaSG~lSH~l~~~~--------------------------------------~~~~~~~~~~~~ 203 (216)
++|+++. ++||+|||||||||++.... .+..++.|.+++
T Consensus 156 ~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~~ 235 (310)
T cd07365 156 EAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNPE 235 (310)
T ss_pred HHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCHH
Confidence 9999974 57999999999999941110 122346789999
Q ss_pred HHHHHHHHHHcCC
Q 027965 204 FDNWLKDALLEGR 216 (216)
Q Consensus 204 FD~~v~~~l~~g~ 216 (216)
||+++++++++||
T Consensus 236 fD~~~l~~~~~gd 248 (310)
T cd07365 236 WDRAFLDLLASGD 248 (310)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999987
No 30
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.1e-34 Score=258.35 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCC-CC----CCeEEEccCCCccCCCC----------------CCCcccccccC
Q 027965 37 PARGFLQAWQAKVFSQRPNSILVISAHWD-TD----FPSVNVVQRNDTIHDFY----------------GFPKQMYDLKY 95 (216)
Q Consensus 37 ~~~~~l~~l~~~l~~~~Pd~IVviS~H~~-~~----~~~i~~~~~~~~~~Df~----------------Gfp~~~~~~~y 95 (216)
...++++++++++++.+||+|||||||+. .+ .++|+++..++..+|+. |.| ++++
T Consensus 70 ~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 145 (328)
T cd07366 70 RCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAP----DEAR 145 (328)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCC----CCCc
Confidence 55689999999999999999999999543 32 35777776666666643 233 3566
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCcccc----cCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC-----CHHHHHHHHHH
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVNE----DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-----TGTYHYNIGKA 166 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~~----~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~-----~~~~~~~lG~a 166 (216)
+++||++||++|++.+.+.||| +.. ..++++|||+|+|+++++|+.++|||||++|... ++++||+||++
T Consensus 146 ~~~gd~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~a 224 (328)
T cd07366 146 TYPCHPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRA 224 (328)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHH
Confidence 8899999999999999999996 654 3345789999999999999999999999998854 77999999999
Q ss_pred hhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 167 LAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 167 L~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|+++ +++||+||||||||||| ++++||+|+++.+++||
T Consensus 225 L~~ai~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD 267 (328)
T cd07366 225 VARAIRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRD 267 (328)
T ss_pred HHHHHHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCC
Confidence 9998 47999999999999998 36999999999999986
No 31
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.9e-34 Score=257.27 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEEccCCCccCCCCCC--------------CcccccccCCC
Q 027965 37 PARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGF--------------PKQMYDLKYPA 97 (216)
Q Consensus 37 ~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~-----~~~i~~~~~~~~~~Df~Gf--------------p~~~~~~~y~~ 97 (216)
...++++++++++++.+||+|||||||+... .++|+++..+...+|+..| |....++++++
T Consensus 72 ~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 151 (335)
T PRK13363 72 ACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY 151 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC
Confidence 5568999999999999999999999988442 4777777666777665433 22334467789
Q ss_pred CCcHHHHHHHHHHHHhCCCCccc----ccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC-----CHHHHHHHHHHhh
Q 027965 98 PGAPELAKRVKDLLKASGIKHVN----EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-----TGTYHYNIGKALA 168 (216)
Q Consensus 98 ~gd~~lA~~l~~~l~~~g~d~~~----~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~-----~~~~~~~lG~aL~ 168 (216)
+||++||++|++.+.++||| +. ...++++|||+|+||++++|+.++|||||++|... ++++||+||++|+
T Consensus 152 ~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~ 230 (335)
T PRK13363 152 PVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLR 230 (335)
T ss_pred CCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999996 65 23446699999999999999999999999998754 4599999999999
Q ss_pred cc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 169 PL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 169 ~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++ +++||+|||||||||++. +++||+|+++.|++||
T Consensus 231 ~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D 271 (335)
T PRK13363 231 RAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKD 271 (335)
T ss_pred HHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCC
Confidence 98 458999999999999984 5799999999999986
No 32
>PRK13373 putative dioxygenase; Provisional
Probab=100.00 E-value=1.7e-32 Score=242.47 Aligned_cols=164 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred EEEcCCCCCCC-CCC-C-----hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCC----CCeEEEccCCCccCCCCC---
Q 027965 21 FFISHGSPTLS-IDE-S-----LPARGFLQAWQAKVFSQRPNSILVISA-HWDTD----FPSVNVVQRNDTIHDFYG--- 85 (216)
Q Consensus 21 ~fisHG~P~~~-~~~-~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~~----~~~i~~~~~~~~~~Df~G--- 85 (216)
+++|| +|.+. .++ + ....++++++++++++.+||+||||++ ||..+ .++|.++......+|+.|
T Consensus 8 ~~~SH-sPl~~g~~d~p~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~ 86 (344)
T PRK13373 8 IGMSH-APGALGWPDAPSASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLE 86 (344)
T ss_pred hcCCC-CCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccCCcccccc
Confidence 56799 77662 222 1 255689999999999999999999966 87653 356666555555566653
Q ss_pred CCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHH
Q 027965 86 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHY 161 (216)
Q Consensus 86 fp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~ 161 (216)
.|... ..-+++|+++||++|++.+.+.||| ++.+.++.+|||+++||.+|+++..+|||||.+|+. .+++|||
T Consensus 87 ~~~~~--~~~~~~g~~elA~~l~~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~~~R~~ 163 (344)
T PRK13373 87 ALRLT--RQERFGGAPEIAERLLRSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMPYRRAY 163 (344)
T ss_pred ccCCC--CCCCCCCCHHHHHHHHHHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCCHHHHH
Confidence 11100 0116799999999999999999998 888889999999999999999998889999999974 4689999
Q ss_pred HHHHHhhccc-----cCCeEEEEecCCccccc
Q 027965 162 NIGKALAPLK-----EEGVLIIGSGSATHNLR 188 (216)
Q Consensus 162 ~lG~aL~~~~-----d~rv~iIaSG~lSH~l~ 188 (216)
+||++|+++. |+||+|||||+|||++.
T Consensus 164 ~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~ 195 (344)
T PRK13373 164 AFGAALRNAAEALDADLRVAFMATGGMSHWPP 195 (344)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCcccCCCc
Confidence 9999999983 48999999999999753
No 33
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.3e-20 Score=157.72 Aligned_cols=183 Identities=18% Similarity=0.151 Sum_probs=139.5
Q ss_pred EEEEcCCCCCCCC-CCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccC
Q 027965 20 TFFISHGSPTLSI-DES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKY 95 (216)
Q Consensus 20 ~~fisHG~P~~~~-~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y 95 (216)
.+.+|||. -.+ +++ +.+.++++++++.+ ..+|++||||||.......+++.-...+.+-++.+-....+.
T Consensus 5 iyv~PHgd--Eii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~i~~-- 78 (261)
T COG3885 5 IYVIPHGD--EIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHPIRK-- 78 (261)
T ss_pred EEeccCCc--cccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccCcchh--
Confidence 36789963 333 222 36678888888875 339999999999988777666644444444333333333333
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCccc---c------cCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHH
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVN---E------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKA 166 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~---~------~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~a 166 (216)
.+..|.+||+.|.+..+.. | ++. . ..+..||||+++||+|+ ....||.+.... ++-...++||..
T Consensus 79 ey~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Fl---k~rrIV~lt~ar-l~~~~l~~Fg~~ 152 (261)
T COG3885 79 EYKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFL---KRRRIVLLTPAR-LSREILVKFGDN 152 (261)
T ss_pred hhhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhc---cceeEEEechhh-ccHHHHHHHHHH
Confidence 4478999999999988766 6 332 1 23467999999999999 345688888755 999999999999
Q ss_pred hhccc---cCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 167 LAPLK---EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 167 L~~~~---d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|.++. +++|.+|.|+|.+|+..+.+|+| |++.+.+||+-+++.+.+||
T Consensus 153 l~~~le~~~~ki~lIiSaD~aHth~edGPYG--Ys~~se~yDk~iv~~lks~n 203 (261)
T COG3885 153 LGKALEEYERKISLIISADHAHTHDEDGPYG--YSEESEEYDKIIVDSLKSGN 203 (261)
T ss_pred HHHHHHHhhcceEEEEecccccccCCCCCCC--CChhHHHHHHHHHHHhcccC
Confidence 99884 48999999999999999999966 78999999999999999986
No 34
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=99.83 E-value=1.7e-19 Score=156.65 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=124.8
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPG 99 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~g 99 (216)
++.+||.+..... .-+..+++.+. ..+||+|||++||+......+.+.........++ +++.
T Consensus 38 ~~i~PHagy~ysG---~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~v 99 (266)
T cd07361 38 AIIVPHAGYVYSG---PVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVPV 99 (266)
T ss_pred EEEeCCCCccccH---HHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCcc
Confidence 5777996644433 12334555554 5799999999997777655555544333333332 6678
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCCCCHHHHHHHHHHhhcc-ccCCeEE
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLI 177 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~~-~d~rv~i 177 (216)
|.+++++|.+.. +++ .........|||+.|||.||..- .++|||||.+ ...+++.+++||++|+++ .++|++|
T Consensus 100 d~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~v-g~~~~~~~~~~g~~l~~~~~~~~~~i 174 (266)
T cd07361 100 DRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILV-GDQSPEAAEALAEALSKYLLDPDTLI 174 (266)
T ss_pred CHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEe-CCCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 999999987653 553 22235677999999999997543 4899999999 566999999999999997 5799999
Q ss_pred EEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 178 IGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 178 IaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
|+||||||++.. +.+++||+.+++.|+++|
T Consensus 175 V~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d 204 (266)
T cd07361 175 VISSDFSHYGPR---------ESAERLDRKAIEAILALD 204 (266)
T ss_pred EEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCC
Confidence 999999998765 568999999999999876
No 35
>PRK00782 hypothetical protein; Provisional
Probab=99.69 E-value=9.3e-16 Score=133.58 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=114.3
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPG 99 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~g 99 (216)
.+.+||-+-.... .-+..+++.+ ..||+|||++||+......+.+... +| ..|=. +++.
T Consensus 39 ~ii~PHAGy~ySG---~~aa~ay~~l------~~p~~vvilGp~H~~~~~~~av~~~-----~~-~TPlG------~v~v 97 (267)
T PRK00782 39 GAVVPHAGYVYSG---RTAARVYAAL------PEAETFVIIGPNHTGLGSPVAVSPE-----GW-KTPLG------DVEV 97 (267)
T ss_pred EEEeCCCCCcccH---HHHHHHHHhc------CCCCEEEEECCCCCCCCCCeEEecC-----cc-cCCCc------CCcC
Confidence 4667994422222 1122344433 3499999999977777766766432 22 22322 6788
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC--CCCCeeEeeeCCCCCHHHHHHHHHHhhccc---cCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE--ADIPVCQLSVQMHHTGTYHYNIGKALAPLK---EEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~--~~iPVV~isi~~~~~~~~~~~lG~aL~~~~---d~r 174 (216)
|.+++++|...+ + ...+.....||++-|+|-||..- .++|||||.+ ...+++++++||++|+++. +++
T Consensus 98 D~~l~~~L~~~~----~--~~~~~ah~~EHSiEvqlPFLq~~~~~~~~iVPI~v-g~~~~~~~~~lg~~L~~~~~~~~~~ 170 (267)
T PRK00782 98 DEELAKALASGI----I--DLDELAHKYEHSIEVQLPFLQYLFGKDFKIVPICL-GMQDEETAREVGEAIAEAIEELGKK 170 (267)
T ss_pred CHHHHHHHHHhh----h--ccchhhhhhhceEEecHHHhhHhhcCCCeEEEEEc-CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999997221 1 11122356899999999776443 4899999998 5788999999999999873 578
Q ss_pred eEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 175 VLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 175 v~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++||+||||||+.. .+.+++||+.+++.|+++|
T Consensus 171 vliIaSsDlSH~~~---------~~~a~~~D~~~i~~I~~~d 203 (267)
T PRK00782 171 VVVIASSDFTHYEP---------AERAKEKDMILIEAILDLD 203 (267)
T ss_pred EEEEEeCCCcCcCC---------HHHHHHHHHHHHHHHHcCC
Confidence 99999999999653 3678999999999999986
No 36
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=98.79 E-value=2.5e-07 Score=80.44 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=100.0
Q ss_pred CCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccch
Q 027965 52 QRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGA 131 (216)
Q Consensus 52 ~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~ 131 (216)
.+||+|||++|-+...+..+.+.+.. +|. .|=- +++.|.|+++.|.+. .++. ........-.|+.
T Consensus 73 ~~~~~vVIlGPnHtg~g~~vsv~~~g----~w~-TPLG------~v~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHSi 137 (279)
T COG1355 73 GEPDTVVILGPNHTGLGSPVSVSPEG----EWE-TPLG------DVKVDSELAEELVKH---SGII-DLDELAHLYEHSI 137 (279)
T ss_pred CCCCEEEEECCCCCCCCCceEEecCC----ccc-cCCC------CeeeCHHHHHHHHHh---cCCC-CchhhhhhhhceE
Confidence 79999999999333455556664322 221 1221 567799999988765 4552 2222335567887
Q ss_pred hhhhhhh---ccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccc-cC-CeEEEEecCCcccccccccCCCCCChhHHHHHH
Q 027965 132 WVPLMLM---YPEADIPVCQLSVQMHHTGTYHYNIGKALAPLK-EE-GVLIIGSGSATHNLRALQFESSSISSWALEFDN 206 (216)
Q Consensus 132 ~vPL~~l---~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~-d~-rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~ 206 (216)
=|=|-|| |++ +..||||.+ ...+.+-..++|+++.++. +. +++||+|=|++|... +..++++|+
T Consensus 138 EvQlPFLqy~f~~-~fKIVPi~m-~~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYep---------~~~~~~~D~ 206 (279)
T COG1355 138 EVQLPFLQYLFGD-EFKIVPICM-GMQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYEP---------QDIVRRKDR 206 (279)
T ss_pred EeehHHHHHHccC-CcEEEeEEE-ecccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccCc---------hhhhhhhHH
Confidence 6655554 554 899999999 7788999999999999985 34 599999999999822 356889999
Q ss_pred HHHHHHHcCC
Q 027965 207 WLKDALLEGR 216 (216)
Q Consensus 207 ~v~~~l~~g~ 216 (216)
.+.++|+++|
T Consensus 207 ~~I~~I~~~d 216 (279)
T COG1355 207 ILIKAILALD 216 (279)
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 37
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=98.69 E-value=3.5e-08 Score=86.46 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=85.6
Q ss_pred cCCCCEEEEEeC-CCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCccc
Q 027965 51 SQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDH 129 (216)
Q Consensus 51 ~~~Pd~IVviS~-H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDH 129 (216)
..+||.|||++| |.... ..+.+.... +| ..|=- +++.|.+++++|.+.... + ...+.....+|
T Consensus 59 ~~~~~~vvilGpsH~~~~-~~~~~~~~~----~~-~TPlG------~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~EH 122 (276)
T PF01875_consen 59 ESKPKRVVILGPSHTGYG-DGIAVSPFD----SW-ETPLG------EVPVDSELAEELAKNFPF--F--EFDDEAHEEEH 122 (276)
T ss_dssp TTT--EEEEEEE-SSS---SSEEE-SSS----EE---SS--------EEB-HHHHHHHHHTT-E-----EE--HHHHH--
T ss_pred hcCCCEEEEECCCccCCC-CCeEeccCC----eE-ECCCc------ccccCHHHHHHHHhcCCC--c--ccchhhccccC
Confidence 478999999998 76443 444443211 12 22322 566799999888764321 2 11122235789
Q ss_pred chhhhhhhh---ccC-CCCCeeEeeeCCCCCHHHHHHHHHHhhccc-cCCeEEEEecCCcccccccccCCCCCChhHHH-
Q 027965 130 GAWVPLMLM---YPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPLK-EEGVLIIGSGSATHNLRALQFESSSISSWALE- 203 (216)
Q Consensus 130 G~~vPL~~l---~p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~~~-d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~- 203 (216)
..=+-|=|| +|+ .+++||||.+ ...+.+.+.++|++|.++. +++++||+|-|+||.....+... ...+.+++
T Consensus 123 SlEvqlPFLq~~~~~~~~~~IVPI~v-g~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~-~~~~~~~~~ 200 (276)
T PF01875_consen 123 SLEVQLPFLQYLFPDRRDFKIVPILV-GDQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDAP-KPEEIAEKI 200 (276)
T ss_dssp TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT--G-GGSSHHHHH
T ss_pred cEEEHHHHHHHHhccCCceEEEEEEe-cCCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCCC-CCHHHHHHH
Confidence 988887775 566 5799999999 5678888999999999984 66799999999999986655211 12244444
Q ss_pred --HHHHHHHHHHcCC
Q 027965 204 --FDNWLKDALLEGR 216 (216)
Q Consensus 204 --FD~~v~~~l~~g~ 216 (216)
.|+..++.|+++|
T Consensus 201 ~~~D~~~i~~i~~~d 215 (276)
T PF01875_consen 201 EALDREAIEAIEALD 215 (276)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccC
Confidence 4999999999875
No 38
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=88.70 E-value=2.7 Score=36.59 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=72.1
Q ss_pred CCCCcHHHHHHHHHHHHhCC-CCcccccCCCCcccchhhhhhhhc----cC-CCCCeeEeeeCCCCCHHHHHHHHHHhhc
Q 027965 96 PAPGAPELAKRVKDLLKASG-IKHVNEDRKRGLDHGAWVPLMLMY----PE-ADIPVCQLSVQMHHTGTYHYNIGKALAP 169 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g-~d~~~~~~~~~lDHG~~vPL~~l~----p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~ 169 (216)
+++.|.++-++ |.+.| |+.+..+ +-.-.|..-+=|-++- +. -.+.||||-+ ..+++..--..|+.|++
T Consensus 100 dLkVD~~i~~e----L~~tg~F~~Mdl~-tde~EHSiEM~lP~lak~l~~~~~~~kivPilv-g~ls~~~e~~~g~lls~ 173 (296)
T KOG3086|consen 100 DLKVDQKICKE----LWATGMFERMDLD-TDEAEHSIEMQLPYLAKVLESRKDTVKIVPILV-GALSPSVEQCYGKLLSK 173 (296)
T ss_pred cccccHHHHHH----HHHcCCccccccc-cccchhhhhhhhHHHHHHHhhcCceEEEEeeEe-cccChHHHHHHHHHHHH
Confidence 56667665554 44554 4422111 1123455544444432 22 3488999999 78899999999999999
Q ss_pred c-ccCCeEEEEecCCcccccccccCCC-----CCChhHHHHHHHHHHHHHcCC
Q 027965 170 L-KEEGVLIIGSGSATHNLRALQFESS-----SISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 170 ~-~d~rv~iIaSG~lSH~l~~~~~~~~-----~~~~~~~~FD~~v~~~l~~g~ 216 (216)
. .|.+=+++-|-|.-||=..++...+ +.+.--+..|+.=+++|+.+|
T Consensus 174 Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~ 226 (296)
T KOG3086|consen 174 YIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLD 226 (296)
T ss_pred HhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCC
Confidence 7 4667788888899999876653111 112333567777777777654
No 39
>PRK03995 hypothetical protein; Provisional
Probab=86.22 E-value=8.1 Score=33.93 Aligned_cols=115 Identities=23% Similarity=0.270 Sum_probs=72.6
Q ss_pred CCCEEEEEeCCCC-CCCCeEEEcc--CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhC----CCCcccccCCC
Q 027965 53 RPNSILVISAHWD-TDFPSVNVVQ--RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS----GIKHVNEDRKR 125 (216)
Q Consensus 53 ~Pd~IVviS~H~~-~~~~~i~~~~--~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~----g~d~~~~~~~~ 125 (216)
++|.||++|=|-- ...+.+|+-. .. ...+|+|-|.+ -++.+|.+...+.+.+++. +|+ +....
T Consensus 63 ~~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~~ye-vt~Ea-- 132 (267)
T PRK03995 63 KGEYIIFLSRHSSKAKKPSLTVHTPGNP-GEASYGGKPKE------LAIANPRLMTSLLRNLKKLAKELGFE-VTFEA-- 132 (267)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCC-chhhcCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCcE-EEEEc--
Confidence 8999999999975 4456665532 22 33458888887 4577888888888877543 343 33322
Q ss_pred CcccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHHHHHHHhhccc-----cCCeEEEEecCCcccc
Q 027965 126 GLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHYNIGKALAPLK-----EEGVLIIGSGSATHNL 187 (216)
Q Consensus 126 ~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~~lG~aL~~~~-----d~rv~iIaSG~lSH~l 187 (216)
.=||-. +.+.|.+=|=|-+. -++..+-.+.+++-++. ++...+||-||. |-.
T Consensus 133 -THHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGg-HYa 193 (267)
T PRK03995 133 -THHGPT--------ELKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGG-HYA 193 (267)
T ss_pred -cccCCC--------CCCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCC-Ccc
Confidence 235532 46889888877433 24455556666655552 344677788886 544
No 40
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=81.99 E-value=3.7 Score=34.89 Aligned_cols=117 Identities=24% Similarity=0.366 Sum_probs=59.5
Q ss_pred cCCCCEEEEEeCCCCCCC-CeEEEc--cCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHh---CCCCcccccCC
Q 027965 51 SQRPNSILVISAHWDTDF-PSVNVV--QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKA---SGIKHVNEDRK 124 (216)
Q Consensus 51 ~~~Pd~IVviS~H~~~~~-~~i~~~--~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~---~g~d~~~~~~~ 124 (216)
..++|.||++|=|--.++ +.+++- .... ..+|+|-|.+ =.+.+|.+...+.+.|++ .||+ +....+
T Consensus 10 ~~~~d~iIf~SrH~s~~~~p~LTvH~tGN~~-~a~~GG~p~~------la~a~P~~~~~~l~~l~~~~~e~y~-v~~EaT 81 (213)
T PF04414_consen 10 FEDPDLIIFLSRHSSESGRPSLTVHTTGNFG-EAEYGGKPGE------LAPANPRLMKALLRALKKHAPEGYE-VSYEAT 81 (213)
T ss_dssp TS--SEEEEEEEEE-TT---EEEEE--EESS---TTSS-TTE------E-BB-HHHHHHHHHHHHHHGGCT-E-EEE--S
T ss_pred cCCCCEEEEEeeccCCCCCceEEEeCCCCCC-ccccCCCCCc------cccCCHHHHHHHHHHHHHhccCCCE-EEEEee
Confidence 578999999999976654 555542 2222 2678898887 346688888877777752 3674 554433
Q ss_pred CCcccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHHHHHHHhhcccc----C--CeEEEEecCCcccc
Q 027965 125 RGLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHYNIGKALAPLKE----E--GVLIIGSGSATHNL 187 (216)
Q Consensus 125 ~~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~~lG~aL~~~~d----~--rv~iIaSG~lSH~l 187 (216)
. || |. +.++|.+=|=|-+. -+++.+-.+.+++-++.+ . +..+||-||. |-.
T Consensus 82 H---HG---Pt-----~~~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~-HYa 142 (213)
T PF04414_consen 82 H---HG---PT-----DLSVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGG-HYA 142 (213)
T ss_dssp ----SS-------------SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S--TT-
T ss_pred c---cC---CC-----CCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCc-ccc
Confidence 3 55 21 25788777776333 234445555555555422 2 2788898886 544
No 41
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=79.56 E-value=35 Score=29.74 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHHHHHHHHhh--cCCCCEEEEEeCCCCCCC-CeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHH-hCC
Q 027965 40 GFLQAWQAKVF--SQRPNSILVISAHWDTDF-PSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK-ASG 115 (216)
Q Consensus 40 ~~l~~l~~~l~--~~~Pd~IVviS~H~~~~~-~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~-~~g 115 (216)
.+.+++.+.+. ..+-...|+++.|-+-.. +....+ ..|+-.....+...-+++|++.+.+.++ +.|
T Consensus 122 PYH~al~~~L~~~~~~~g~~~liD~HSm~s~~p~~~~g----------~~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g 191 (263)
T TIGR02017 122 PYHAALQAEIERLRAQHGYAVLYDAHSIRSVIPRLFEG----------KLPDFNIGTNDGASCDPALTDAVEAVCAKATG 191 (263)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCCccCCCcCCC----------CCCCEEEeCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 34455555553 346678899999954331 111101 1122222222333449999999999996 678
Q ss_pred CCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC--CC---------HHHHHHHHHHhhcc
Q 027965 116 IKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH--HT---------GTYHYNIGKALAPL 170 (216)
Q Consensus 116 ~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~--~~---------~~~~~~lG~aL~~~ 170 (216)
+ .+..+..+ .|.++.-+|=.|+..+..|||-+|.. ++ .++.-+|.+.|+.+
T Consensus 192 ~-~v~~N~Py---~Gg~itr~yg~p~~~vhaiQiEi~r~lYm~e~~~~~~~~~~~~~~l~~~l~~~ 253 (263)
T TIGR02017 192 Y-SHVLNGRF---KGGWITRHYGQPQNGVHAVQMELAQRGYMAEEAEPFAYRPDRAAPLRAVLKQL 253 (263)
T ss_pred c-eEEeCCCC---CCcceecccCCCCCCCceEeeeEchhhhcCCCCCCCCcCHhHHHHHHHHHHHH
Confidence 8 46554433 67888888888999999999999832 22 23556666666654
No 42
>PRK05723 flavodoxin; Provisional
Probab=79.40 E-value=11 Score=29.85 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC-CCCHHHHHHHHHHhh-----ccccC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-HHTGTYHYNIGKALA-----PLKEE 173 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~-~~~~~~~~~lG~aL~-----~~~d~ 173 (216)
..++|++|.+.|.+.|++ +.......+ .-+.- + +.+.=|+-+|.-. +-.|.....|=+.|. .+.+.
T Consensus 14 ae~~A~~la~~l~~~g~~-~~~~~~~~~-----~~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~ 85 (151)
T PRK05723 14 AEEVARHAESLLKAAGFE-AWHNPRASL-----QDLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL 85 (151)
T ss_pred HHHHHHHHHHHHHHCCCc-eeecCcCCH-----hHHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence 467899999999988885 432111111 01100 0 1121133333311 122444444444555 35568
Q ss_pred CeEEEEecCCcc
Q 027965 174 GVLIIGSGSATH 185 (216)
Q Consensus 174 rv~iIaSG~lSH 185 (216)
+++|+|.||.++
T Consensus 86 ~~aVfGLGDs~Y 97 (151)
T PRK05723 86 PGAVIALGDSSY 97 (151)
T ss_pred EEEEEeEeCCcc
Confidence 999999999987
No 43
>PRK14866 hypothetical protein; Provisional
Probab=78.75 E-value=19 Score=34.06 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCCCC-CCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHh---CCCCcccccCCCCc
Q 027965 53 RPNSILVISAHWDT-DFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKA---SGIKHVNEDRKRGL 127 (216)
Q Consensus 53 ~Pd~IVviS~H~~~-~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~---~g~d~~~~~~~~~l 127 (216)
++|.||++|=|--. ..+.+|+-. .+-...+|+|-|.. -++.+|.+...+.+.+++ .||+ +....+
T Consensus 69 ~~d~iIf~SRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~ye-vt~EaT--- 138 (451)
T PRK14866 69 DPDLLIFASRHSSVDTGPLLTAHFTGNFGPAEYGGEPGS------LAPAAPNAMKAVLEALAEHAPEGYD-VSMECT--- 138 (451)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCCChhhcCCCCCc------cccCCHHHHHHHHHHHHHhCcCCcE-EEEEcc---
Confidence 89999999999764 456665532 12233457788876 456678888888776643 3563 443332
Q ss_pred ccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHHHHHHHhhccc----cCCeEEEEecCCcccc
Q 027965 128 DHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHYNIGKALAPLK----EEGVLIIGSGSATHNL 187 (216)
Q Consensus 128 DHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~~lG~aL~~~~----d~rv~iIaSG~lSH~l 187 (216)
-||-. +.+.|.+=|-|-+. -++..+-.+.+++-++. ++...+||-||. |--
T Consensus 139 HHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~GGg-HYa 197 (451)
T PRK14866 139 HHGPT--------DVGVPSLFVELGSTEKEWDDPDAARAVARAILDLRGVPPHTDRPLVGFGGG-HYA 197 (451)
T ss_pred ccCCC--------CCCCceEEEEeCCCHHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEeCCC-Ccc
Confidence 35542 35788887777433 23445555556555543 234577788886 544
No 44
>PRK09004 FMN-binding protein MioC; Provisional
Probab=77.81 E-value=13 Score=29.22 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHHHHHHHHHHhhc----ccc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALAP----LKE 172 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~~~~~lG~aL~~----~~d 172 (216)
..++|++|.+.+++.|++ +.... .+. +-. .++ ...+.+.+.+. -.|.....|=+.|.+ +.+
T Consensus 15 ae~~A~~l~~~~~~~g~~-~~~~~---~~~----~~~--l~~--~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g 82 (146)
T PRK09004 15 AEYVADHLAEKLEEAGFS-TETLH---GPL----LDD--LSA--SGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQ 82 (146)
T ss_pred HHHHHHHHHHHHHHcCCc-eEEec---cCC----HHH--hcc--CCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCC
Confidence 467899999999999984 44211 111 111 122 33343333222 234555666666644 456
Q ss_pred CCeEEEEecCCcc
Q 027965 173 EGVLIIGSGSATH 185 (216)
Q Consensus 173 ~rv~iIaSG~lSH 185 (216)
.+++|+|.||.+.
T Consensus 83 ~~~aVfGlGds~Y 95 (146)
T PRK09004 83 VRFAAIGIGSSEY 95 (146)
T ss_pred CEEEEEeecCCCH
Confidence 8899999999874
No 45
>PRK08105 flavodoxin; Provisional
Probab=70.80 E-value=33 Score=26.96 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHHHHHHHHHHhhc----ccc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALAP----LKE 172 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~~~~~lG~aL~~----~~d 172 (216)
..++|++|.+.|++.|++ +.... ++. .-++ ...+..+|.+.+.+. -.|.....|=+.|.+ +.+
T Consensus 15 te~~A~~l~~~l~~~g~~-~~~~~---~~~--~~~~----~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~ 84 (149)
T PRK08105 15 ALLVAEEAEAILTAQGHE-VTLFE---DPE--LSDW----QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPN 84 (149)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEec---hhh--CCch----hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCC
Confidence 467899999999989984 43211 111 1111 111123343333222 234444444445543 345
Q ss_pred CCeEEEEecCCcc
Q 027965 173 EGVLIIGSGSATH 185 (216)
Q Consensus 173 ~rv~iIaSG~lSH 185 (216)
.+++|+|.||.++
T Consensus 85 ~~~avfGlGds~Y 97 (149)
T PRK08105 85 LRYGVIALGDSSY 97 (149)
T ss_pred CEEEEEeeecCCH
Confidence 7899999999875
No 46
>PRK06703 flavodoxin; Provisional
Probab=67.76 E-value=26 Score=27.21 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHHHHHHHHHHhhc--cccCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALAP--LKEEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~~~~~lG~aL~~--~~d~r 174 (216)
-..+|+.|.+.+.+.|++ +....-...+... + .+...|-+..++. ..|.....|=..|.+ +.+++
T Consensus 15 T~~iA~~ia~~l~~~g~~-v~~~~~~~~~~~~------l---~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~ 84 (151)
T PRK06703 15 TEDIADLIKVSLDAFDHE-VVLQEMDGMDAEE------L---LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKK 84 (151)
T ss_pred HHHHHHHHHHHHHhcCCc-eEEEehhhCCHHH------H---hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCE
Confidence 456899999999888874 4321111111110 1 2334455544332 124445555444543 45678
Q ss_pred eEEEEecCCc
Q 027965 175 VLIIGSGSAT 184 (216)
Q Consensus 175 v~iIaSG~lS 184 (216)
++++|||+.+
T Consensus 85 ~~vfg~g~~~ 94 (151)
T PRK06703 85 VAVFGSGDTA 94 (151)
T ss_pred EEEEccCCCC
Confidence 9999999886
No 47
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=67.03 E-value=23 Score=31.88 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeC--CCCCC-----CCeEEEccCCCccCCCCCCC-------------------ccc
Q 027965 37 PARGFLQAWQAKVFSQRPNSILVISA--HWDTD-----FPSVNVVQRNDTIHDFYGFP-------------------KQM 90 (216)
Q Consensus 37 ~~~~~l~~l~~~l~~~~Pd~IVviS~--H~~~~-----~~~i~~~~~~~~~~Df~Gfp-------------------~~~ 90 (216)
...+++++|.+.+++..|+.+||.-. ..... ...|.......+.++.++-. ...
T Consensus 188 ~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~V 267 (315)
T TIGR01370 188 EMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFV 267 (315)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcE
Confidence 34567788877778888998887522 22221 12222211223333332211 124
Q ss_pred ccccCCCCC-----cHHHHHHHHHHHHhCCCCc
Q 027965 91 YDLKYPAPG-----APELAKRVKDLLKASGIKH 118 (216)
Q Consensus 91 ~~~~y~~~g-----d~~lA~~l~~~l~~~g~d~ 118 (216)
+-++|-.+| +.++++.+.+.+++.||-+
T Consensus 268 l~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~p 300 (315)
T TIGR01370 268 LTVDYVDDGTKTNENPARMKDAAEKARAAGLIP 300 (315)
T ss_pred EEEEecCCcccchhhHHHHHHHHHHHHHcCCee
Confidence 568888877 5688899999999999843
No 48
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=65.05 E-value=57 Score=30.28 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCC---CCCHHHHHHHHHHhhcc-ccCCe
Q 027965 101 PELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQM---HHTGTYHYNIGKALAPL-KEEGV 175 (216)
Q Consensus 101 ~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~---~~~~~~~~~lG~aL~~~-~d~rv 175 (216)
..+|++|++.|++.|++ +..-.-..-|.+ .+..+ .+-.-+-|..++ ...+.-...||..++.. .++.+
T Consensus 261 ~~ma~aiaegl~~~gv~-v~~~~~~~~~~~------eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~ 333 (388)
T COG0426 261 EKMAQAIAEGLMKEGVD-VEVINLEDADPS------EIVEEILDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLA 333 (388)
T ss_pred HHHHHHHHHHhhhcCCc-eEEEEcccCCHH------HHHHHHhhcceEEEecCcccCCCCchHHHHHHHHHhccCcCceE
Confidence 34789999999999986 442110001222 22222 345555566543 34466667777777765 35779
Q ss_pred EEEEecCCcc
Q 027965 176 LIIGSGSATH 185 (216)
Q Consensus 176 ~iIaSG~lSH 185 (216)
+++||+|.|=
T Consensus 334 ~vfgS~GW~g 343 (388)
T COG0426 334 GVFGSYGWSG 343 (388)
T ss_pred EEEeccCCCC
Confidence 9999998764
No 49
>PRK09271 flavodoxin; Provisional
Probab=61.01 E-value=48 Score=26.15 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC---CCCHHHHHHHHHHhhcc--ccCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGTYHYNIGKALAPL--KEEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~---~~~~~~~~~lG~aL~~~--~d~r 174 (216)
-..+|+.|.+.|++.|++ +... +....+ ..+. ...-.+.-+|-|..++ +..|.....|=+.|... ..++
T Consensus 14 Te~~A~~ia~~l~~~g~~-v~~~-~~~~~~--~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~ 87 (160)
T PRK09271 14 TREVAREIEERCEEAGHE-VDWV-ETDVQT--LAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPN 87 (160)
T ss_pred HHHHHHHHHHHHHhCCCe-eEEE-eccccc--cccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCe
Confidence 366899999999999984 4311 111111 0010 0011234566666543 23344455555555443 3578
Q ss_pred eEEEEecCCcc
Q 027965 175 VLIIGSGSATH 185 (216)
Q Consensus 175 v~iIaSG~lSH 185 (216)
++++||||.++
T Consensus 88 ~avfgsgd~~~ 98 (160)
T PRK09271 88 VAVFGTGETQW 98 (160)
T ss_pred EEEEecCCCCc
Confidence 99999997554
No 50
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=59.80 E-value=45 Score=25.27 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeee-CCC-CC--HH-HHHHHHHHhh------
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV-QMH-HT--GT-YHYNIGKALA------ 168 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi-~~~-~~--~~-~~~~lG~aL~------ 168 (216)
...+|++|.+.|++.|++ +....-...|.. +..+. +.+.=++-++. +.+ .+ .. ...++-....
T Consensus 10 te~~A~~ia~~l~~~g~~-~~~~~~~~~~~~----~~~~~-~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~ 83 (143)
T PF00258_consen 10 TEKMAEAIAEGLRERGVE-VRVVDLDDFDDS----PSDLS-EYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKP 83 (143)
T ss_dssp HHHHHHHHHHHHHHTTSE-EEEEEGGGSCHH----HHHHC-TTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHcCCc-eeeechhhhhhh----hhhhh-hhceeeEeecccCCCcchhhhhhhhhhcccccccccccc
Confidence 456899999999999984 442111112222 22221 11221222222 112 22 11 3345554442
Q ss_pred ccccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHH
Q 027965 169 PLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKD 210 (216)
Q Consensus 169 ~~~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~ 210 (216)
.+...+++|+|+|+.+-.- +...++.+|+++.+
T Consensus 84 ~l~~~~~avfg~Gd~~~~~---------f~~~~k~l~~~l~~ 116 (143)
T PF00258_consen 84 DLKGKKYAVFGLGDSGYGG---------FCAAAKKLDERLEE 116 (143)
T ss_dssp HCTTCEEEEEEEEETTSST---------TTHHHHHHHHHHHH
T ss_pred ccccceeeeeecCCccchh---------hhhHHHHHHHHHHH
Confidence 3456889999999764311 44667788877765
No 51
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=58.93 E-value=75 Score=26.77 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHH-----HHHH
Q 027965 38 ARGFLQAWQAKVFSQRPNSILVISA-HWDT----DFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPEL-----AKRV 107 (216)
Q Consensus 38 ~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~----~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~l-----A~~l 107 (216)
..+..+.+.+.+.+.+||+++.++= -.-+ ...+|++.+ .-+-|-.|.-.. +......|..+. .+++
T Consensus 45 f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERVAINv~D--arIpDN~G~qpi--DepI~~dGpaAYfstlPvkam 120 (207)
T COG2039 45 FKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPERVAINVDD--ARIPDNAGNQPI--DEPIDPDGPAAYFSTLPVKAM 120 (207)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChhheeecccc--ccCCCCCCCCcC--CCccCCCCchhhhhcCcHHHH
Confidence 3456667777788899999999972 1111 123455533 235565543211 122233333332 4678
Q ss_pred HHHHHhCCCCcccccCC---CCcccchhhhhhhhcc
Q 027965 108 KDLLKASGIKHVNEDRK---RGLDHGAWVPLMLMYP 140 (216)
Q Consensus 108 ~~~l~~~g~d~~~~~~~---~~lDHG~~vPL~~l~p 140 (216)
++.++++|+ |...+.+ +--.|-.+.-|+++..
T Consensus 121 v~~~~~~Gi-PA~vS~sAGTyvCNhvmY~~l~~~~~ 155 (207)
T COG2039 121 VQAIREAGI-PASVSNSAGTYVCNHVMYGLLHHLAK 155 (207)
T ss_pred HHHHHHcCC-ChhhhcccchhhhHHHHHHHHHHHHH
Confidence 999999999 6765443 4456777777777643
No 52
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=57.54 E-value=25 Score=34.27 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=60.9
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCCCccc
Q 027965 42 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 120 (216)
Q Consensus 42 l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~ 120 (216)
.++..+++++.++|++|+++++|.....+..... .|.+++ ||++. +.||...|+..+ ..+++.|+ +.
T Consensus 66 A~~~aekFk~e~Vd~~I~vt~cw~fG~Et~d~~~~~PvllW---g~~dp------erPGav~L~A~l-aa~~Q~Gi-p~- 133 (588)
T PRK10991 66 AAACEEKFSSENVGLTITVTPCWCYGSETIDMDPTRPKAIW---GFNGT------ERPGAVYLAAAL-AAHSQKGI-PA- 133 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCcccchhHHHhcCCCCCEEEe---CCCCC------CCCcHHHHHHHH-HHHHhcCC-Ce-
Confidence 4455666777899999999999965433332221 133333 55543 347777776433 33444555 22
Q ss_pred ccCCCCcccchhhhhhhhcc----CCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEEEec
Q 027965 121 EDRKRGLDHGAWVPLMLMYP----EADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSG 181 (216)
Q Consensus 121 ~~~~~~lDHG~~vPL~~l~p----~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iIaSG 181 (216)
.+++. +.+=+-+|=.+ .-...+..+-+.+++.++.++++.||+=
T Consensus 134 ---------------~~IyGh~vqd~dd~~i~~dv--~ekLl~FaRAa~aV~~LRg~syl~IG~r 181 (588)
T PRK10991 134 ---------------FSIYGHDVQDADDTSIPADV--EEKLLRFARAGLAVASMKGKSYLSIGGV 181 (588)
T ss_pred ---------------EEEeCCCccccccccchHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 22221 11111111000 0123456677777888899999999874
No 53
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=56.07 E-value=18 Score=30.38 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHHhh--cCCCCEEEEEeCCCCCCCC-eEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHH-hC
Q 027965 40 GFLQAWQAKVF--SQRPNSILVISAHWDTDFP-SVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK-AS 114 (216)
Q Consensus 40 ~~l~~l~~~l~--~~~Pd~IVviS~H~~~~~~-~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~-~~ 114 (216)
.+.+++.+.+. ..+...+|+++.|-++... ...... .+-.+++-+| ..-++++++.+.+.++ +.
T Consensus 114 Pyh~~l~~~l~~~~~~~g~~illd~HS~~~~~~~~~~~~~~~~~lG~~~~-----------~s~~~~l~~~~~~~l~~~~ 182 (222)
T PF05013_consen 114 PYHRALAALLERLRARFGKVILLDCHSMPPVPPGREDDPRPDIVLGTLHG-----------PSCDPELVDALAEALEASD 182 (222)
T ss_dssp HHHHHHHHHHHHHHHCCS-EEEEEEEEE-TCCCCCCT----SECEECCTT-----------TSS-HHHHHHHHHHCC-CT
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeccCCCcccccccCCCCCeEEEcCCC-----------CCCCHHHHHHHHHHhhccc
Confidence 44555555553 4567788999988765421 110000 0001122112 1227899999999999 77
Q ss_pred CCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC
Q 027965 115 GIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM 153 (216)
Q Consensus 115 g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~ 153 (216)
|+ .+..+..+ .|..++-++=.|+..++.|+|-+|.
T Consensus 183 g~-~v~~N~Py---~Gg~~~~~~~~~~~~v~~iqiEi~~ 217 (222)
T PF05013_consen 183 GY-SVRVNEPY---SGGYITRYYGRPARGVHAIQIEINR 217 (222)
T ss_dssp TS--EEETSS-----GGHCCCHHHCCCCTEEEEEEEEEG
T ss_pred Cc-EEeeCCCC---CCcchhcEEecCCCCceEEEEEEEH
Confidence 88 47665544 3455555677788899999998864
No 54
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=55.90 E-value=20 Score=31.86 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=27.4
Q ss_pred CcccEEEE-cCCC--CCCCCCCCh--------------hHHHHHHHH-HHHhhcCCCCEEEEEeC
Q 027965 16 SVMDTFFI-SHGS--PTLSIDESL--------------PARGFLQAW-QAKVFSQRPNSILVISA 62 (216)
Q Consensus 16 ~~~P~~fi-sHG~--P~~~~~~~~--------------~~~~~l~~l-~~~l~~~~Pd~IVviS~ 62 (216)
.+.+++|+ +|++ +.....+.. .....++-+ .+.+.+.+||+|||+|-
T Consensus 177 ~~~~Vlfvls~~Gg~~~vaG~~t~ad~iI~lAGG~~a~~~~~~yKpls~EAliaa~PDvivm~~r 241 (300)
T COG4558 177 EPKKVLFVLSHGGGAPLVAGKGTAADAIIELAGGVNAAAGIEGYKPLSAEALIAANPDVIVMMSR 241 (300)
T ss_pred ccceEEEEEecCCCceEeecCCccHHHHHHhccCcccccccccccccCHHHHhhcCCCEEEEecC
Confidence 45678885 9988 444442221 011122222 35566889999999984
No 55
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=51.05 E-value=62 Score=31.50 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC---CCCHHHHHHHHHHhhc-----cc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGTYHYNIGKALAP-----LK 171 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~---~~~~~~~~~lG~aL~~-----~~ 171 (216)
...+|++|.+.+++.|++ +... .+|. +-+ .- . .+...|-+-+.+ +-.|.....|=+.|.. +.
T Consensus 72 ae~~A~~l~~~l~~~g~~-~~v~---~~~d--~~~-~~-l--~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~~~L~ 141 (597)
T TIGR01931 72 ARRLAKRLAEKLEAAGFS-VRLS---SADD--YKF-KQ-L--KKERLLLLVISTQGEGEPPEEAISFHKFLHSKKAPKLE 141 (597)
T ss_pred HHHHHHHHHHHHHhCCCc-cEEe---chHH--CCH-hh-c--ccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCCcccC
Confidence 445899999999999984 4321 1111 000 00 1 122333332222 2235556666666643 35
Q ss_pred cCCeEEEEecCCcc
Q 027965 172 EEGVLIIGSGSATH 185 (216)
Q Consensus 172 d~rv~iIaSG~lSH 185 (216)
+.+++|+|.||.|.
T Consensus 142 ~~~~aVfGLGDssY 155 (597)
T TIGR01931 142 NLRYSVLGLGDSSY 155 (597)
T ss_pred CCeEEEEeCCcCCH
Confidence 68899999999985
No 56
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=49.02 E-value=1.5e+02 Score=26.56 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeE
Q 027965 98 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL 176 (216)
Q Consensus 98 ~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~ 176 (216)
+.+.+...++++.+.+.|||.+... +...-...|+-+..+-.. ..+.+.....+...+|....+--..|..+.+.|+.
T Consensus 23 ~~~~~~~~~~a~~AE~~Gfd~~~~~-~~~~~~~p~~~laalA~~T~rI~l~~~v~~~~~~P~~~A~~~AtLD~lS~GR~~ 101 (346)
T TIGR03565 23 AVDHGYLKQIAQAADRLGYTGVLLP-TGRSCEDSWVTASALAPVTERLKFLVAVRPGLMSPTVAARMAATLDRLSGGRLL 101 (346)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHhcCeeEEEEEecCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 3467788889999999999844332 111223345555555444 45666554344466787777777777777888888
Q ss_pred E-EEecCCcc
Q 027965 177 I-IGSGSATH 185 (216)
Q Consensus 177 i-IaSG~lSH 185 (216)
+ ||+|..-.
T Consensus 102 lgvg~G~~~~ 111 (346)
T TIGR03565 102 INVVTGGDPV 111 (346)
T ss_pred EEEeCCCCHH
Confidence 8 89987543
No 57
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=47.73 E-value=33 Score=33.32 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCCCccc
Q 027965 42 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 120 (216)
Q Consensus 42 l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~ 120 (216)
.++..++++..++|++|+++|+|.....++.... .+..++ ||++. +.||..-|+..+..+. +.|++ .
T Consensus 62 A~~~a~kf~~~~Vd~tI~vtpcWcygset~dm~~~~P~alW---gfn~p------erpGaVyLaA~lAaha-Q~Glp-~- 129 (584)
T cd03556 62 AAACAEKFTRENVGATITVTPCWCYGSETMDMDPNTPKAIW---GFNGT------ERPGAVYLAAVLAGHA-QKGIP-A- 129 (584)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHHHHhhcccCCEEEE---cCCCC------CCCchHHHHhhhhHHh-hCCCC-c-
Confidence 4445566778899999999999966543332221 344443 55544 4488888888655443 45552 1
Q ss_pred ccCCCCcccchhhhhhhhcc----CCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEEEe
Q 027965 121 EDRKRGLDHGAWVPLMLMYP----EADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 180 (216)
Q Consensus 121 ~~~~~~lDHG~~vPL~~l~p----~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iIaS 180 (216)
..++. +.+=+-+|-.+ .-...+..+=+.+++.++.++++.|||
T Consensus 130 ---------------f~IyG~~vqd~~d~~iP~DV--~eKll~faRAa~AV~~Lkgksyl~IG~ 176 (584)
T cd03556 130 ---------------FGIYGHDVQEADDTTIPEDV--KEKILRFARAAIAVASMRGKSYLSIGS 176 (584)
T ss_pred ---------------eEEecCCccccccccCcHHH--HHHHHHHHHHHHHHHHhcCCeEEEECC
Confidence 11222 11111111111 011234445555567778899999987
No 58
>PRK07308 flavodoxin; Validated
Probab=47.71 E-value=1.2e+02 Score=23.32 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHHHHHHHHHHhhcc--ccCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALAPL--KEEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~~~~~lG~aL~~~--~d~r 174 (216)
-..+|+.|.+.+.+.|++ +....--..|. .-+ .+...|-+..++. .-+.....|=+.|... .++.
T Consensus 15 Te~iA~~ia~~l~~~g~~-~~~~~~~~~~~------~~l---~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 15 TEEIADIVADKLRELGHD-VDVDECTTVDA------SDF---EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEEecccCCH------hHh---ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 456799999999888874 43211111111 111 2234455554332 2234444444445443 4688
Q ss_pred eEEEEecCC
Q 027965 175 VLIIGSGSA 183 (216)
Q Consensus 175 v~iIaSG~l 183 (216)
++++||||-
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 999999984
No 59
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=47.68 E-value=1.4e+02 Score=25.19 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEEccCCCccCCCCCC-CcccccccCCCCCcHHH-----HHHHHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFPS---VNVVQRNDTIHDFYGF-PKQMYDLKYPAPGAPEL-----AKRVKDLL 111 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~---i~~~~~~~~~~Df~Gf-p~~~~~~~y~~~gd~~l-----A~~l~~~l 111 (216)
..+.+.+.+.+.+||+||.++=+.-....+ +.+......+-|-.|. |.. ......|...+ .+++++.|
T Consensus 48 ~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~---~~I~~~gp~~~~t~lp~~~l~~~l 124 (209)
T PRK13193 48 IEDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKG---EKIDPLGQDGIFTNIPVEDLVDLL 124 (209)
T ss_pred HHHHHHHHHHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCC---CcccCCCcceeecCCCHHHHHHHH
Confidence 334445555667999999998765444332 2222222223343332 111 01111222222 57888999
Q ss_pred HhCCCCccccc
Q 027965 112 KASGIKHVNED 122 (216)
Q Consensus 112 ~~~g~d~~~~~ 122 (216)
+++|+ ++..+
T Consensus 125 ~~~Gi-p~~~S 134 (209)
T PRK13193 125 NENGI-PAELS 134 (209)
T ss_pred HhcCC-CceEe
Confidence 99999 46544
No 60
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=46.39 E-value=40 Score=24.19 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
.++++|||. . ..+.+.+.++.+++++..|
T Consensus 2 ivlv~hGS~-----~-~~~~~~~~~l~~~l~~~~~ 30 (101)
T cd03416 2 LLLVGHGSR-----D-PRAAEALEALAERLRERLP 30 (101)
T ss_pred EEEEEcCCC-----C-HHHHHHHHHHHHHHHhhCC
Confidence 578999993 2 2456778888888865543
No 61
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=45.07 E-value=38 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=17.2
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFS 51 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 51 (216)
.++++||+|.- ++....++++.+++.+
T Consensus 2 lllv~HGs~~~-----s~~~~~~~~~~~~l~~ 28 (101)
T cd03409 2 LLVVGHGSPYK-----DPYKKDIEAQAHNLAE 28 (101)
T ss_pred EEEEECCCCCC-----ccHHHHHHHHHHHHHH
Confidence 58899999632 1344566666666654
No 62
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.81 E-value=37 Score=27.35 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHH-HhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhcccc--CCeE
Q 027965 100 APELAKRVKDLL-KASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGVL 176 (216)
Q Consensus 100 d~~lA~~l~~~l-~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d--~rv~ 176 (216)
+-+-+-.+++.+ .+.|.| +-.+ .|. --.++....++|||.|.+. .+++-++|.+++. .+|+
T Consensus 18 ~~e~~v~~a~~~~~~~g~d-ViIs------RG~--ta~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~~Ia 81 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGAD-VIIS------RGG--TAELLRKHVSIPVVEIPIS-------GFDILRALAKAKKYGPKIA 81 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-S-EEEE------EHH--HHHHHHCC-SS-EEEE----------HHHHHHHHHHCCCCTSEEE
T ss_pred cHHHHHHHHHHhhHhcCCe-EEEE------CCH--HHHHHHHhCCCCEEEECCC-------HhHHHHHHHHHHhcCCcEE
Confidence 444444555555 667876 4322 222 2334555578999999872 4788899999864 7899
Q ss_pred EEEecCCccccccccc------CCCCCChhHHHHHHHHHHHHHcC
Q 027965 177 IIGSGSATHNLRALQF------ESSSISSWALEFDNWLKDALLEG 215 (216)
Q Consensus 177 iIaSG~lSH~l~~~~~------~~~~~~~~~~~FD~~v~~~l~~g 215 (216)
||+.......+..... .-..++ -..+....+.++.++|
T Consensus 82 vv~~~~~~~~~~~~~~ll~~~i~~~~~~-~~~e~~~~i~~~~~~G 125 (176)
T PF06506_consen 82 VVGYPNIIPGLESIEELLGVDIKIYPYD-SEEEIEAAIKQAKAEG 125 (176)
T ss_dssp EEEESS-SCCHHHHHHHHT-EEEEEEES-SHHHHHHHHHHHHHTT
T ss_pred EEecccccHHHHHHHHHhCCceEEEEEC-CHHHHHHHHHHHHHcC
Confidence 9999998876643321 001111 1346667777766654
No 63
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=41.92 E-value=49 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
++++.|||+.- . .+.++++.+.+++..+
T Consensus 3 illvgHGSr~~-----~--~~~~~~l~~~l~~~~~ 30 (103)
T cd03413 3 VVFMGHGTDHP-----S--NAVYAALEYVLREEDP 30 (103)
T ss_pred EEEEECCCCch-----h--hhHHHHHHHHHHhcCC
Confidence 68899999532 1 3677788887765443
No 64
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=40.48 E-value=34 Score=25.68 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=30.7
Q ss_pred cchhhhhhccccCcccEE----EEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC
Q 027965 4 QRIPVIAAKSRLSVMDTF----FISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA 62 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~P~~----fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~ 62 (216)
.|||||.-|+.-++.|.+ |+-+ .+.-..+++.-+++++....=++|.++-.
T Consensus 15 ~~IPVIvEr~~~s~lp~ldk~KfLvp--------~~~tv~qf~~~ir~rl~l~~~~alfl~Vn 69 (104)
T PF02991_consen 15 DKIPVIVERYPKSKLPDLDKKKFLVP--------KDLTVGQFVYIIRKRLQLSPEQALFLFVN 69 (104)
T ss_dssp TEEEEEEEE-TTSSS---SSSEEEEE--------TTSBHHHHHHHHHHHTT--TTS-EEEEBT
T ss_pred CccEEEEEEccCCChhhcCccEEEEc--------CCCchhhHHHHhhhhhcCCCCceEEEEEc
Confidence 689999999888888876 4433 22234678888999886544467776643
No 65
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=40.44 E-value=62 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 19 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
-+++++|||. . ..+.+.++++.+.+++..+
T Consensus 3 ~lvlv~hGS~-----~-~~~~~~~~~~~~~l~~~~~ 32 (126)
T PRK00923 3 GLLLVGHGSR-----L-PYNKEVVTKIAEKIKEKHP 32 (126)
T ss_pred EEEEEeCCCC-----C-hHHHHHHHHHHHHHHHhCC
Confidence 3688999993 2 2345677788777754433
No 66
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=39.78 E-value=1e+02 Score=30.07 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCC---CCCHHHHHHHHHHhh-----ccc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGTYHYNIGKALA-----PLK 171 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~---~~~~~~~~~lG~aL~-----~~~ 171 (216)
..++|++|.+.+++.|++ +.... +| -.-+ .-| + +...|-+.+.+ +-.|.....|=+.|. .+.
T Consensus 75 ae~lA~~la~~l~~~g~~-~~v~~---~~--d~~~-~~L-~--~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~ 144 (600)
T PRK10953 75 ARRVAEQLRDDLLAAKLN-VNLVN---AG--DYKF-KQI-A--QEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLE 144 (600)
T ss_pred HHHHHHHHHHHHHhCCCC-cEEec---hH--hCCH-hHh-c--cCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCC
Confidence 456899999999999995 43211 11 1001 111 1 22333332222 123555555555664 245
Q ss_pred cCCeEEEEecCCcc
Q 027965 172 EEGVLIIGSGSATH 185 (216)
Q Consensus 172 d~rv~iIaSG~lSH 185 (216)
+.+++|+|.||.|.
T Consensus 145 ~~~faVfGLGDssY 158 (600)
T PRK10953 145 NTAFAVFGLGDTSY 158 (600)
T ss_pred CCEEEEEccCccCH
Confidence 67899999999984
No 67
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=39.19 E-value=67 Score=23.61 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
.++++|||. . ..+.+.++++.+++++.-+
T Consensus 3 ~llv~HGS~-----~-~~~~~~~~~l~~~l~~~~~ 31 (117)
T cd03414 3 VVLVGRGSS-----D-PDANADVAKIARLLEEGTG 31 (117)
T ss_pred EEEEcCCCC-----C-HHHHHHHHHHHHHHHHhcC
Confidence 578999993 2 2345678888888865433
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=38.99 E-value=38 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWD 65 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~ 65 (216)
.+.+++..+++++.++|+||++| ||-
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~-H~G 193 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALS-HSG 193 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-ccC
Confidence 34566666667767899999986 884
No 69
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.72 E-value=57 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEE
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSIL 58 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IV 58 (216)
.+.++||| .. ..+.+.++++.+.+++.-||..|
T Consensus 3 illv~fGS-----~~-~~~~~~~~~i~~~l~~~~p~~~V 35 (127)
T cd03412 3 ILLVSFGT-----SY-PTAEKTIDAIEDKVRAAFPDYEV 35 (127)
T ss_pred EEEEeCCC-----CC-HHHHHHHHHHHHHHHHHCCCCeE
Confidence 57889999 22 24567788888888766565544
No 70
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=38.01 E-value=2.9e+02 Score=24.48 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeC-CCCCHHHHHHHHHHhhccccCCeEE
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQ-MHHTGTYHYNIGKALAPLKEEGVLI 177 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~-~~~~~~~~~~lG~aL~~~~d~rv~i 177 (216)
+++-..++++.+.+.|||.+.....+.. ..|+.|-.+-.. ..+.+-+-.++ ...+|....+--..|..+.+.|+.+
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~~w~~eh~~~--d~~~~laa~a~~T~ri~lgt~v~~~~~~~P~~~A~~~atLd~lS~GR~~l 88 (325)
T TIGR03559 11 PPRNAVDLVAAAEKAGLDSVWVAEAYGF--DAVTPLGYLAARTSRVRLGTGVLQLYARTPTLTAMTAAGLDHLSGGRFIL 88 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccc--CHHHHHHHHHHhCCceeEEeeeecCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4444555677788899985544332322 355666555544 45776664443 3457777776666777777777544
Q ss_pred -EEecCCccc
Q 027965 178 -IGSGSATHN 186 (216)
Q Consensus 178 -IaSG~lSH~ 186 (216)
||+|+.+..
T Consensus 89 GlG~g~~~~~ 98 (325)
T TIGR03559 89 GLGASGPQVV 98 (325)
T ss_pred EecCCCchhh
Confidence 666665553
No 71
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=36.89 E-value=44 Score=29.16 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWDT 66 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~~ 66 (216)
.+..+++.+++++.++|+||++| ||-.
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~ls-H~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAAT-HMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cccc
Confidence 34566666677767899999888 8854
No 72
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=34.74 E-value=52 Score=28.12 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027965 37 PARGFLQAWQAKVFSQRPNSILVISAHWD 65 (216)
Q Consensus 37 ~~~~~l~~l~~~l~~~~Pd~IVviS~H~~ 65 (216)
...+.++++.+++++.++|+||++| |+.
T Consensus 155 d~~~~~~~~v~~~~~~~~D~iVvl~-H~g 182 (257)
T cd07406 155 DYVETARELVDELREQGADLIIALT-HMR 182 (257)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEe-ccC
Confidence 3445666766667788999999998 874
No 73
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=34.68 E-value=39 Score=27.26 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHhhccc-cCCeEEEEecCCcccc
Q 027965 160 HYNIGKALAPLK-EEGVLIIGSGSATHNL 187 (216)
Q Consensus 160 ~~~lG~aL~~~~-d~rv~iIaSG~lSH~l 187 (216)
+-++|+.|+..+ +++|+|||||=+.+-.
T Consensus 44 ~~~~~~~l~~~~~~~~vLVLGTgEfMy~P 72 (155)
T PF12500_consen 44 LQALAARLAAKRPGERVLVLGTGEFMYLP 72 (155)
T ss_pred HHHHHHHHHhhcCCCcEEEEccchHHHHH
Confidence 456777777665 4899999999776543
No 74
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=34.48 E-value=2.8e+02 Score=25.19 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEE
Q 027965 99 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLI 177 (216)
Q Consensus 99 gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~i 177 (216)
.+.+...++++.+.+.|||.+.... ...-...|+-+-.+-.. ..+.+.....+...+|....+--..|..+.+.|+.+
T Consensus 25 ~~~~~~~~~a~~AE~~Gfd~~~~~~-~~~~~dp~~~laalAa~T~ri~l~~av~p~~~~P~~~A~~~AtLD~lS~GR~~l 103 (378)
T PRK00719 25 VDHGYLQQIAQAADRLGYTGVLIPT-GRSCEDAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLI 103 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CCCCCCHHHHHHHHHHHcCeeEEEEEEeCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 3577788888999999998443321 11112334444444444 456665544444678888777777787777778666
Q ss_pred -EEecCCccccc
Q 027965 178 -IGSGSATHNLR 188 (216)
Q Consensus 178 -IaSG~lSH~l~ 188 (216)
||+|...+.+.
T Consensus 104 gig~G~~~~e~~ 115 (378)
T PRK00719 104 NLVTGGDPAELA 115 (378)
T ss_pred EEecCCCHHHHH
Confidence 88887655443
No 75
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=33.77 E-value=53 Score=28.20 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWDT 66 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~~ 66 (216)
.++++++.+++++.++|+||+++ ||-.
T Consensus 169 ~~~~~~~v~~lr~~~~D~IIvl~-H~g~ 195 (277)
T cd07410 169 VETAKKYVPKLRAEGADVVVVLA-HGGF 195 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cCCc
Confidence 34566777777767899888887 8844
No 76
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=33.61 E-value=38 Score=25.71 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=33.2
Q ss_pred cchhhhhhccccCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCC
Q 027965 4 QRIPVIAAKSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAH 63 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H 63 (216)
+|||||..|..-..+|.+=- --+.++.+....+++..+++++....=++|.++...
T Consensus 23 ~~iPVIvE~~~~~~~p~l~k----~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~ 78 (112)
T cd01611 23 DRIPVIVERYPKSDLPDLDK----KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNN 78 (112)
T ss_pred CceEEEEEEcCCCCcccccC----ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 57888877766555442210 112233443456788888988865555777777643
No 77
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=33.42 E-value=78 Score=24.36 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 027965 19 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFS 51 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 51 (216)
-.++++|||. . ..+.+.++++++.+++
T Consensus 2 ~lllvgHGSR-----~-~~~~~~~~~la~~l~~ 28 (125)
T cd03415 2 AIIIITHGSR-----R-NTFNEDMEEWAAYLER 28 (125)
T ss_pred EEEEEecCCC-----C-hHHHHHHHHHHHHHHh
Confidence 3678999992 3 3567788888888863
No 78
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.81 E-value=1.5e+02 Score=27.89 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeee
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV 151 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi 151 (216)
..+.+.+|.+.|+++|+|.+-...+=|.=|=+..-+---.....||||+|..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 4578999999999999984434445566665554444444557899988875
No 79
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=31.30 E-value=2.9e+02 Score=22.49 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCCCCcccccc------cCCCCCcHHHHHHHHHH
Q 027965 40 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDL------KYPAPGAPELAKRVKDL 110 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~Gfp~~~~~~------~y~~~gd~~lA~~l~~~ 110 (216)
...+.+.+.+.+.+||+||.++-|.-.....+ .........-|-.|....--.+ .|...-+ .+++++.
T Consensus 47 ~~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp---~~~l~~~ 123 (194)
T cd00501 47 KAVEVLPELIEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLP---VKAIVKA 123 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCC---HHHHHHH
Confidence 34444555555679999999998875554333 2211111223433321110000 0111112 5778888
Q ss_pred HHhCCCCcccccCCCC---cccchhhhhhhhccC-CCCCeeEeeeC
Q 027965 111 LKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 152 (216)
Q Consensus 111 l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~-~~iPVV~isi~ 152 (216)
+++.|++ +..+.+-| =+|-.+.-|++.... .++|+..|.++
T Consensus 124 l~~~g~~-~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP 168 (194)
T cd00501 124 LREAGIP-ARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVP 168 (194)
T ss_pred HHhcCCC-ceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecC
Confidence 9999994 65443333 466666666665332 34788888886
No 80
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=31.22 E-value=2e+02 Score=24.25 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=86.7
Q ss_pred cCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcC-----CCC-EEEEEeCCCCCCCCeEEEccCCCccCCCCCCCc
Q 027965 15 LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQ-----RPN-SILVISAHWDTDFPSVNVVQRNDTIHDFYGFPK 88 (216)
Q Consensus 15 ~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~-----~Pd-~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~ 88 (216)
++|.|++|+---|.-+..+..+.....++.+.+.|++. ..+ .||.+..|.....+-..+ -+| .||.
T Consensus 1 mrRlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~-------~nF-~~p~ 72 (207)
T COG4245 1 MRRLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDA-------ANF-NPPI 72 (207)
T ss_pred CCCCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhH-------hhc-CCCc
Confidence 46889999866555566656677778888887777421 111 234444433222211111 112 2343
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhh
Q 027965 89 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALA 168 (216)
Q Consensus 89 ~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~ 168 (216)
- .++|.-.|..+|..++.--+= .......---|-|=|+-||.- .-.|...|+-|.++.
T Consensus 73 L------~a~GgT~lGaAl~~a~d~Ie~---~~~~~~a~~kgdyrP~vfLiT-------------DG~PtD~w~~~~~~~ 130 (207)
T COG4245 73 L------TAQGGTPLGAALTLALDMIEE---RKRKYDANGKGDYRPWVFLIT-------------DGEPTDDWQAGAALV 130 (207)
T ss_pred e------ecCCCCchHHHHHHHHHHHHH---HHhhcccCCccccceEEEEec-------------CCCcchHHHhHHHHh
Confidence 3 566777777777655431110 011122233455656555532 233477888888887
Q ss_pred cccc---CCeEEEEecCCccccccccc----CCCCCC---hhHHHHHHHHHHHHHcC
Q 027965 169 PLKE---EGVLIIGSGSATHNLRALQF----ESSSIS---SWALEFDNWLKDALLEG 215 (216)
Q Consensus 169 ~~~d---~rv~iIaSG~lSH~l~~~~~----~~~~~~---~~~~~FD~~v~~~l~~g 215 (216)
...+ ++|+.++-|.---+...... -...+. ..-.+|=+|+-..|.+|
T Consensus 131 ~~~~~~~k~v~a~~~G~~~ad~~~L~qit~~V~~~~t~d~~~f~~fFkW~SaSisag 187 (207)
T COG4245 131 FQGERRAKSVAAFSVGVQGADNKTLNQITEKVRQFLTLDGLQFREFFKWLSASISAG 187 (207)
T ss_pred hhcccccceEEEEEecccccccHHHHHHHHhhccccccchHHHHHHHHHHHHHhhcc
Confidence 7643 44555555543122211110 001111 23367888888888766
No 81
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=30.79 E-value=26 Score=30.41 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEEEe
Q 027965 105 KRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 180 (216)
Q Consensus 105 ~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iIaS 180 (216)
..+++.|.+.|+| +....+..+|+|-+.+ +..+.+.++.|.+++...+.+ |-.+-+....+|+||+-
T Consensus 48 ~~~~~~L~~~G~D-~iTlGNH~fD~gel~~---~l~~~~~~l~~aN~~~~~pg~-----~~~i~~~~G~kIaVigl 114 (255)
T cd07382 48 PKIAKELLSAGVD-VITMGNHTWDKKEILD---FIDEEPRLLRPANYPPGTPGR-----GYGVVEVNGKKIAVINL 114 (255)
T ss_pred HHHHHHHHhcCCC-EEEecccccCcchHHH---HHhcCcCceEeeecCCCCCCC-----CeEEEEECCEEEEEEEE
Confidence 4566778889998 4444578899994333 223445667777664322110 01122223467888863
No 82
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=30.04 E-value=2.5e+02 Score=23.94 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=39.5
Q ss_pred CCcHHH-HHHHHHHHHhCCCCccccc----CCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCH---HHHHH-HHHHhh
Q 027965 98 PGAPEL-AKRVKDLLKASGIKHVNED----RKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTG---TYHYN-IGKALA 168 (216)
Q Consensus 98 ~gd~~l-A~~l~~~l~~~g~d~~~~~----~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~---~~~~~-lG~aL~ 168 (216)
||||+| .-+-.+.|+++.+ +... .+..+.+...-+ ++.+ +..++.+..+..-+. ..+|+ .-+.+.
T Consensus 13 PGdp~LlTlkA~~~L~~adv--i~~p~~~~~~~s~a~~i~~~--~~~~--~~~~~~l~fpm~~~~~~~~~~~~~~~~~i~ 86 (238)
T PRK05948 13 PGDPELITLKGLRLLQSAPV--VAFPAGLAGQPGLAEQIIAP--WLSP--QQIKLPLYFPYVQDEEQLEQAWQAAADQVW 86 (238)
T ss_pred CCChHHhHHHHHHHHhhCCE--EEEeCCCCCchhHHHHHHHH--HcCC--CcEEEEecCCccCChHHHHHHHHHHHHHHH
Confidence 788888 4445566776654 2211 112233333333 2222 233555544433332 23332 222222
Q ss_pred c-c-ccCCeEEEEecCCcc
Q 027965 169 P-L-KEEGVLIIGSGSATH 185 (216)
Q Consensus 169 ~-~-~d~rv~iIaSG~lSH 185 (216)
+ + ..++|+++.+||-+=
T Consensus 87 ~~~~~g~~v~~l~~GDp~~ 105 (238)
T PRK05948 87 HYLEQGEDVAFACEGDVSF 105 (238)
T ss_pred HHHHcCCeEEEEeCCChHH
Confidence 2 2 247899999999653
No 83
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=29.90 E-value=1.1e+02 Score=29.80 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccC-CCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCC
Q 027965 42 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI 116 (216)
Q Consensus 42 l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~-~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~ 116 (216)
.++..++++..++|++|+++|+|.....++..... +..++ ||++. +.||..-|+..+..+. +.|+
T Consensus 65 A~a~a~kfk~~~Vd~tItvtpcWcygseT~dm~p~~P~alW---gfn~p------erpGaVyLaA~lAaha-Q~Gl 130 (587)
T TIGR01089 65 AAACAEKFSRENVGLTITVTPCWCYGSETIDMDPHRPKAIW---GFNGT------ERPGAVYLAAALAGHS-QKGL 130 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHhhhhcCCCCCEEEE---cCCCC------CCCchHHHHHhhhHHh-hCCC
Confidence 34455667778999999999999765444433222 33443 55544 4478888876665443 4555
No 84
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.33 E-value=2.5e+02 Score=20.76 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCH-HHHHHHHHHhhc--cccC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTG-TYHYNIGKALAP--LKEE 173 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~-~~~~~lG~aL~~--~~d~ 173 (216)
-..+|+.|.+.+.+.|++ +....-...+ +- -+ .+...|-+..+.. ..+ .....|=+.|.. +.++
T Consensus 12 T~~~A~~i~~~~~~~g~~-v~~~~~~~~~-----~~-~l---~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk 81 (140)
T TIGR01753 12 TEEMANIIAEGLKEAGAE-VDLLEVADAD-----AE-DL---LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGK 81 (140)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEcccCC-----HH-HH---hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCC
Confidence 456889999999888874 4321101111 10 11 1234444444332 122 333444344443 4568
Q ss_pred CeEEEEecCCcc
Q 027965 174 GVLIIGSGSATH 185 (216)
Q Consensus 174 rv~iIaSG~lSH 185 (216)
.++++|||+.+.
T Consensus 82 ~~~vfgt~g~~~ 93 (140)
T TIGR01753 82 KVALFGSGDWGY 93 (140)
T ss_pred EEEEEecCCCCc
Confidence 899999998765
No 85
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.19 E-value=3.2e+02 Score=23.32 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCC-----eEEEccCC-CccCCCCCC-CcccccccCCCCCcHH----H-HHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFP-----SVNVVQRN-DTIHDFYGF-PKQMYDLKYPAPGAPE----L-AKRVK 108 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~-----~i~~~~~~-~~~~Df~Gf-p~~~~~~~y~~~gd~~----l-A~~l~ 108 (216)
..+.+.+.+.+.+||+||.++=+.-.... +++..... ..+-|-.|. |... .....|... | .++++
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~---~I~~~gp~ay~stLpv~~iv 125 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGE---PTDPAGPVAYHATVPVRAMV 125 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCC---cccCCCcceeecCCCHHHHH
Confidence 34455555667899999999865443332 23322110 013343321 1110 000111111 1 57889
Q ss_pred HHHHhCCCCcccccC---CCCcccchhhhhhhhc
Q 027965 109 DLLKASGIKHVNEDR---KRGLDHGAWVPLMLMY 139 (216)
Q Consensus 109 ~~l~~~g~d~~~~~~---~~~lDHG~~vPL~~l~ 139 (216)
+.++++|+ ++..+. ++-=+|=.+.-|+++.
T Consensus 126 ~~l~~~gi-pa~vS~~AGtYvCN~v~Y~sL~~~~ 158 (222)
T PRK13195 126 LAMRKAGV-PADVSDAAGTFVCNHLMYGVLHHLA 158 (222)
T ss_pred HHHHhcCC-CceEecCCCcceehHHHHHHHHHHh
Confidence 99999999 565443 3334666666666653
No 86
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=28.16 E-value=15 Score=28.34 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=14.7
Q ss_pred hhccccCCeEEEEecCCcc
Q 027965 167 LAPLKEEGVLIIGSGSATH 185 (216)
Q Consensus 167 L~~~~d~rv~iIaSG~lSH 185 (216)
+..+.+++++|||+|+.+-
T Consensus 7 ~~~l~~~~vlviGaGg~ar 25 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAAR 25 (135)
T ss_dssp HSTGTTSEEEEESSSHHHH
T ss_pred cCCcCCCEEEEECCHHHHH
Confidence 3355679999999998754
No 87
>TIGR03619 F420_Rv2161c probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria.
Probab=27.62 E-value=3e+02 Score=23.36 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred hhhhhhhhccC-CCCCeeEeee-CCCCCHHHHHHHHHHhhccccCCe-EEEEecCCc
Q 027965 131 AWVPLMLMYPE-ADIPVCQLSV-QMHHTGTYHYNIGKALAPLKEEGV-LIIGSGSAT 184 (216)
Q Consensus 131 ~~vPL~~l~p~-~~iPVV~isi-~~~~~~~~~~~lG~aL~~~~d~rv-~iIaSG~lS 184 (216)
.|+.+-.+-.. ..+.+.+-.+ +...+|....+-=..|..+.+.|+ +=||+|...
T Consensus 46 p~~~la~~A~~T~rI~lgt~v~~~~~r~P~~~A~~~atLd~ls~GR~~lGlG~G~~~ 102 (246)
T TIGR03619 46 PFVALAFAAAVTSRLRLGTGVLVLPQRDPLLLAKQAATLDLLSGGRLRLGVGVGWLR 102 (246)
T ss_pred HHHHHHHHHHhcCeeEEEEEeeccCccCHHHHHHHHHHHHhhcCCCeEEEEecCCCH
Confidence 44455555444 4577666443 345567666665566666667774 447777643
No 88
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.57 E-value=32 Score=30.01 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCC
Q 027965 42 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI 116 (216)
Q Consensus 42 l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~ 116 (216)
+..+.+.++..++|+|+|.||+..........-.. | .+.+ ++-|+.-+.+-+++|++..++.|.
T Consensus 56 ~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~a--------G--khVl-~EKPla~t~~ea~~l~~~a~~~~~ 119 (342)
T COG0673 56 YTDLEELLADPDIDAVYIATPNALHAELALAALEA--------G--KHVL-CEKPLALTLEEAEELVELARKAGV 119 (342)
T ss_pred cCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhc--------C--CEEE-EcCCCCCCHHHHHHHHHHHHHcCC
Confidence 34455555567799999999965432211111000 0 1111 223555577777777777777765
No 89
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=27.39 E-value=83 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHH-HHHhhcCCCCEEEEEeCCCCC
Q 027965 39 RGFLQAW-QAKVFSQRPNSILVISAHWDT 66 (216)
Q Consensus 39 ~~~l~~l-~~~l~~~~Pd~IVviS~H~~~ 66 (216)
.+.+++. .+.+++.++|+||+++ ||-.
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~-H~G~ 183 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALG-HLGV 183 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe-CcCc
Confidence 3455555 5556678899999988 8754
No 90
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=27.37 E-value=3.7e+02 Score=22.51 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCCC-Ccccc-----cccCCCCCcHHHHHHHHH
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PKQMY-----DLKYPAPGAPELAKRVKD 109 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~Gf-p~~~~-----~~~y~~~gd~~lA~~l~~ 109 (216)
..+.+.+.+.+.+.+||+||.++=+.-....++ .+......+-|-.|. |...- .-.|...-+ .+++++
T Consensus 44 ~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLp---v~~l~~ 120 (212)
T TIGR00504 44 FEAIEALQQAIDEIEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDGPAAYFATLP---VRAMVL 120 (212)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCCCceeecCCC---HHHHHH
Confidence 345566666666789999999987754433222 221111122333332 11000 000111111 467888
Q ss_pred HHHhCCCCcccccCC---CCcccchhhhhhhhccC-CCCCeeEeeeC
Q 027965 110 LLKASGIKHVNEDRK---RGLDHGAWVPLMLMYPE-ADIPVCQLSVQ 152 (216)
Q Consensus 110 ~l~~~g~d~~~~~~~---~~lDHG~~vPL~~l~p~-~~iPVV~isi~ 152 (216)
.+++.|+ ++..+.+ +-=.|=.+--|++.... .++|.+=|.++
T Consensus 121 ~l~~~gi-p~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP 166 (212)
T TIGR00504 121 AMKKAGI-PADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVP 166 (212)
T ss_pred HHHHcCC-CeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcC
Confidence 8899999 4654332 22345455555554332 34666666665
No 91
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=26.65 E-value=82 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWDT 66 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~~ 66 (216)
.+.++++.+++++.++|+||+++ |+-.
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~-H~G~ 203 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLA-HEGG 203 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEe-CCCC
Confidence 35666777777777899999997 7643
No 92
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.48 E-value=1.1e+02 Score=25.32 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCCEEEEEeCCC
Q 027965 43 QAWQAKVFSQRPNSILVISAHW 64 (216)
Q Consensus 43 ~~l~~~l~~~~Pd~IVviS~H~ 64 (216)
.++.++|++.+.|+||.+...+
T Consensus 2 ~~l~~~Lr~~~yD~vid~~~~~ 23 (247)
T PF01075_consen 2 LALIKKLRKEKYDLVIDLQGSF 23 (247)
T ss_dssp HHHHHHHCTSB-SEEEE-S-SH
T ss_pred HHHHHHHhCCCCCEEEECCCCc
Confidence 3567778888999999987654
No 93
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=26.26 E-value=4.4e+02 Score=22.96 Aligned_cols=85 Identities=8% Similarity=-0.036 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeE-eeeCCCCCHHHHHHHHHHhhccccCCe
Q 027965 98 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQ-LSVQMHHTGTYHYNIGKALAPLKEEGV 175 (216)
Q Consensus 98 ~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~-isi~~~~~~~~~~~lG~aL~~~~d~rv 175 (216)
.++++-..+..+.+.+.|||.+......+ ..|+.|-.+-.. ..+.+-+ |.+....+|....+--..|..+.+.|+
T Consensus 14 ~~~~~~~~~~a~~aE~~Gfd~~w~~e~~~---~~~~~laa~a~~T~ri~lGt~V~~~~~r~P~~lA~~~atLd~ls~GR~ 90 (278)
T TIGR03620 14 SPDARARAEAAAELEELGYGALWLGGSPG---AELDLVEALLDATERLVVATGIVNIWVRPADEVAASFARLEAAHPGRF 90 (278)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCC---ChHHHHHHHHHhCCccEEEeeeecCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 44554444566677889998554443322 237777776544 4566644 333334577776666666777777774
Q ss_pred -EEEEecCCcc
Q 027965 176 -LIIGSGSATH 185 (216)
Q Consensus 176 -~iIaSG~lSH 185 (216)
+=||+|.-.+
T Consensus 91 ~lGlG~G~~~~ 101 (278)
T TIGR03620 91 LLGLGVSHPPL 101 (278)
T ss_pred EEEecCCCccc
Confidence 4477877554
No 94
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=26.18 E-value=4.2e+02 Score=23.42 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCcccccCCCCcccchhhhhhhh---ccC-CCCCeeEeeeC-CCCCHHHHHHHHHHhhccccCCeEE-EEe
Q 027965 107 VKDLLKASGIKHVNEDRKRGLDHGAWVPLMLM---YPE-ADIPVCQLSVQ-MHHTGTYHYNIGKALAPLKEEGVLI-IGS 180 (216)
Q Consensus 107 l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l---~p~-~~iPVV~isi~-~~~~~~~~~~lG~aL~~~~d~rv~i-IaS 180 (216)
+++.+.+.|||.+........+....-|+.+| -.. ..|.+.+-.++ ...+|....+-=..|..+.+.|+.+ ||+
T Consensus 31 ~a~~AE~lGfd~~w~~ehh~~~~~~~~p~~~la~la~~T~rIrlgt~v~~~~~~~P~~lA~~~atLD~lS~GR~~lGvg~ 110 (337)
T TIGR03858 31 EIELADQVGLDVFGVGEHHRPDYAVSAPEVVLAAAAARTKRIRLTSAVTVLSSDDPVRVFQRFATLDALSNGRAEIMAGR 110 (337)
T ss_pred HHHHHHHcCCcEEEecccCCCCCCCCCHHHHHHHHHHhcCeeEEEeeeeccCccCHHHHHHHHHHHHHhcCCceEEEEec
Confidence 34446678998554332222233333444444 333 45777665543 3456665555445566666777655 888
Q ss_pred cCCcc
Q 027965 181 GSATH 185 (216)
Q Consensus 181 G~lSH 185 (216)
|...+
T Consensus 111 G~~~~ 115 (337)
T TIGR03858 111 GSFIE 115 (337)
T ss_pred CCChh
Confidence 87543
No 95
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=25.91 E-value=39 Score=29.91 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCC--------CeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCC
Q 027965 45 WQAKVFSQRPNSILVISAHWDTDF--------PSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI 116 (216)
Q Consensus 45 l~~~l~~~~Pd~IVviS~H~~~~~--------~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~ 116 (216)
+.+.+++.+||.||+++=.+.-.. ..|++ .+.+ .| .+.|...+-..|.+.-++.|+
T Consensus 70 ~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNi--Hpsl------LP--------~yRG~~pi~wai~~g~~~~Gv 133 (309)
T PRK00005 70 FLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINL--HASL------LP--------RWRGAAPIQRAIIAGDAETGV 133 (309)
T ss_pred HHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEE--eCcc------cc--------cCCCccHHHHHHHcCCCeEEE
Confidence 344566789999999875332211 13433 2221 12 235666677777766666676
Q ss_pred CcccccCCCCcccchh
Q 027965 117 KHVNEDRKRGLDHGAW 132 (216)
Q Consensus 117 d~~~~~~~~~lDHG~~ 132 (216)
++..- +-++|+|-.
T Consensus 134 -Tih~~-~~~~D~G~I 147 (309)
T PRK00005 134 -TIMQM-DEGLDTGDM 147 (309)
T ss_pred -EEEEE-CCcccCCCE
Confidence 44432 346788763
No 96
>COG0400 Predicted esterase [General function prediction only]
Probab=25.75 E-value=1.8e+02 Score=24.34 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=57.7
Q ss_pred hccccCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEc--cCCCccCCCCCCCc
Q 027965 11 AKSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV--QRNDTIHDFYGFPK 88 (216)
Q Consensus 11 ~~~~~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~--~~~~~~~Df~Gfp~ 88 (216)
.+...+..|++++.||.. -++ .+++. +.+. .-|+ --++|++........... -.....+| +
T Consensus 11 ~~~~~p~~~~iilLHG~G---gde----~~~~~-~~~~---~~P~-~~~is~rG~v~~~g~~~~f~~~~~~~~d-----~ 73 (207)
T COG0400 11 EKPGDPAAPLLILLHGLG---GDE----LDLVP-LPEL---ILPN-ATLVSPRGPVAENGGPRFFRRYDEGSFD-----Q 73 (207)
T ss_pred cCCCCCCCcEEEEEecCC---CCh----hhhhh-hhhh---cCCC-CeEEcCCCCccccCcccceeecCCCccc-----h
Confidence 456777888999999985 222 12222 4433 4555 456677765432111000 01122222 2
Q ss_pred ccccccCCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhc
Q 027965 89 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMY 139 (216)
Q Consensus 89 ~~~~~~y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~ 139 (216)
+.. ......+++.|.....+.|+| .....=.|...|+.+-++.++
T Consensus 74 edl-----~~~~~~~~~~l~~~~~~~gi~-~~~ii~~GfSqGA~ial~~~l 118 (207)
T COG0400 74 EDL-----DLETEKLAEFLEELAEEYGID-SSRIILIGFSQGANIALSLGL 118 (207)
T ss_pred hhH-----HHHHHHHHHHHHHHHHHhCCC-hhheEEEecChHHHHHHHHHH
Confidence 211 122455677777777788985 333334678888888887764
No 97
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=25.17 E-value=2.3e+02 Score=24.25 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcc----cchhhhhhhhccC-CCCCeeEeeeCCC-CCHHHHHHHHHHhhccccC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLD----HGAWVPLMLMYPE-ADIPVCQLSVQMH-HTGTYHYNIGKALAPLKEE 173 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lD----HG~~vPL~~l~p~-~~iPVV~isi~~~-~~~~~~~~lG~aL~~~~d~ 173 (216)
..+-..++++.+.+.|||.+........+ +..++-+-.+-.. ..+.+.+-.++.. .+|-+..+-=..|..+.+.
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~~~p~~~~a~~a~~T~~i~lg~~v~~~~~~~P~~~A~~~atld~ls~G 100 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHFTDYGSSPDPFVLLAALAARTKRIRLGTAVTPLPLRHPVRLAEQIATLDQLSGG 100 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTSTS-HHHHHHHHHHT-SSSEEEEEEEECSSS-HHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCccccchhHHHHHHHHhhccCccceeeeeecccccchHHHHHHHHHhhhcCCC
Confidence 45556667888889999866554444444 4455555555555 5688777555444 6776666655666666666
Q ss_pred C-eEEEEecCCcccccc
Q 027965 174 G-VLIIGSGSATHNLRA 189 (216)
Q Consensus 174 r-v~iIaSG~lSH~l~~ 189 (216)
| .+=||+|...+....
T Consensus 101 R~~lgig~G~~~~~~~~ 117 (307)
T PF00296_consen 101 RFILGIGRGSSPDEFRA 117 (307)
T ss_dssp -EEEEEESTSHHHHHHH
T ss_pred CceeEeeccCChhhhhh
Confidence 6 455777776665443
No 98
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=24.45 E-value=3.8e+02 Score=23.44 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCcccccCCCCcccchh-hhhhhh---ccC-CCCCeeEeee-CCCCCHHHHHHHHHHhhccccCCe-EE
Q 027965 105 KRVKDLLKASGIKHVNEDRKRGLDHGAW-VPLMLM---YPE-ADIPVCQLSV-QMHHTGTYHYNIGKALAPLKEEGV-LI 177 (216)
Q Consensus 105 ~~l~~~l~~~g~d~~~~~~~~~lDHG~~-vPL~~l---~p~-~~iPVV~isi-~~~~~~~~~~~lG~aL~~~~d~rv-~i 177 (216)
.++++.+.+.|||.+........++|.+ -|+.+| -.. ..|.+-.-.+ ....+|.+..+--..|..+...|+ +=
T Consensus 25 ~~~a~~Ae~lGfd~~w~~Ehh~~~~~~~~~p~~~la~lA~~T~rI~lgt~v~~~~~~~P~~~Ae~~atLD~lS~GR~~lG 104 (315)
T cd01096 25 VDTGVLVDKLNFDTALVLEHHFSENGIVGAPLTAAAFLLGLTERLNVGSLNQVITTHHPVRIAEEALLLDQMSKGRFILG 104 (315)
T ss_pred HHHHHHHHHcCCCEEEecccccCCCCCCCCHHHHHHHHHHhcCEeEeeeeeeccCccCHHHHHHHHHHHHHHcCCCeEEE
Confidence 3445666788998554332233334322 455444 333 4566655333 345667666665566777766674 44
Q ss_pred EEecCCcc
Q 027965 178 IGSGSATH 185 (216)
Q Consensus 178 IaSG~lSH 185 (216)
||+|...+
T Consensus 105 vg~G~~~~ 112 (315)
T cd01096 105 FSDCLYDK 112 (315)
T ss_pred eeCCCCHH
Confidence 77776543
No 99
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=24.43 E-value=1.3e+02 Score=19.01 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.3
Q ss_pred CeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 145 PVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 145 PVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
|+|.|.+....+.++--+|.++|.++
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~ 26 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEA 26 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 88999987778899989999998775
No 100
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=24.28 E-value=2e+02 Score=24.34 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCH-HHHHHHHHHhhccccCCeEEE
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTG-TYHYNIGKALAPLKEEGVLII 178 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~-~~~~~lG~aL~~~~d~rv~iI 178 (216)
|+++..++++.+++.++ ++....+.++| --.+-+--...+...-.+.++. ..+. .-.+ +.+++++ .++-||
T Consensus 124 ~p~~l~eiv~avr~~~~-pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~--~~~g~~ad~---~~I~~i~-~~ipVI 195 (233)
T cd02911 124 DPERLSEFIKALKETGV-PVSVKIRAGVD-VDDEELARLIEKAGADIIHVDA--MDPGNHADL---KKIRDIS-TELFII 195 (233)
T ss_pred CHHHHHHHHHHHHhcCC-CEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECc--CCCCCCCcH---HHHHHhc-CCCEEE
Confidence 68999999999998888 57665555554 2223332222232233455542 2211 1112 3344443 468899
Q ss_pred EecCCccc
Q 027965 179 GSGSATHN 186 (216)
Q Consensus 179 aSG~lSH~ 186 (216)
|.||+...
T Consensus 196 gnGgI~s~ 203 (233)
T cd02911 196 GNNSVTTI 203 (233)
T ss_pred EECCcCCH
Confidence 99998653
No 101
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=24.22 E-value=32 Score=27.62 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCCC
Q 027965 43 QAWQAKVFSQRPNSILVISAHWDTDF 68 (216)
Q Consensus 43 ~~l~~~l~~~~Pd~IVviS~H~~~~~ 68 (216)
..+++.+ .+=++|+||||-|++..
T Consensus 16 ~s~~~~l--k~KK~V~iiSPQWF~k~ 39 (163)
T PF04918_consen 16 GSIGDQL--KNKKAVFIISPQWFTKK 39 (163)
T ss_dssp TTSHHHH--TT-EEEEE--GGG--TT
T ss_pred Hhhhccc--cCCcEEEEECCcccCCC
Confidence 3344554 45589999999999853
No 102
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.19 E-value=1.3e+02 Score=26.24 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=15.7
Q ss_pred CcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcC
Q 027965 16 SVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQ 52 (216)
Q Consensus 16 ~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~ 52 (216)
..-+++|+.||+| . +....+..|...+.+.
T Consensus 140 ~~~a~vlmGHGt~-----h--~an~~Y~~l~~~l~~~ 169 (262)
T PF06180_consen 140 KDEAVVLMGHGTP-----H--PANAAYSALQAMLKKH 169 (262)
T ss_dssp TTEEEEEEE---S-----C--HHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEeCCCC-----C--CccHHHHHHHHHHHhC
Confidence 3446778888773 2 2345666776666543
No 103
>PRK06756 flavodoxin; Provisional
Probab=24.16 E-value=3.3e+02 Score=20.75 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHHHHHHHHHHhh--ccccCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALA--PLKEEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~~~~~lG~aL~--~~~d~r 174 (216)
-..+|+.|.+.+++.|++ +....-.. ++. ..-+ .+.-.|-+..++. .-+.....|=+.|. .+.++.
T Consensus 15 Te~vA~~ia~~l~~~g~~-v~~~~~~~-~~~----~~~~---~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~ 85 (148)
T PRK06756 15 TEEMADHIAGVIRETENE-IEVIDIMD-SPE----ASIL---EQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKK 85 (148)
T ss_pred HHHHHHHHHHHHhhcCCe-EEEeehhc-cCC----HHHH---hcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCE
Confidence 456789999999888873 43211001 111 1111 2334455555432 12344555544454 346788
Q ss_pred eEEEEecCCc
Q 027965 175 VLIIGSGSAT 184 (216)
Q Consensus 175 v~iIaSG~lS 184 (216)
++++|||+.+
T Consensus 86 ~~~fgt~~~~ 95 (148)
T PRK06756 86 AAVFGSCDSA 95 (148)
T ss_pred EEEEeCCCCc
Confidence 9999998864
No 104
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.07 E-value=4.3e+02 Score=22.14 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCCCCcccccccCCCCCcH----HH-HHHHHHHH
Q 027965 40 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDLKYPAPGAP----EL-AKRVKDLL 111 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~----~l-A~~l~~~l 111 (216)
.+.+.+.+.+.+.+||+||.++=|.-....++ ........+-|..|.-..--.+ ...|.. .| .+++++.+
T Consensus 48 ~~~~~l~~~l~~~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i--~~~gp~~~~t~Lp~~~l~~~l 125 (215)
T PRK13197 48 KSAEVLKEAIEEVQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPI--VEDGPAAYFSTLPIKAMVKAI 125 (215)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcc--cCCCCceeEcCCCHHHHHHHH
Confidence 44455555556779999999987654433322 2211112233443331110000 000110 01 47788888
Q ss_pred HhCCCCcccccCCCC---cccchhhhhhhhcc-CCCCCeeEeeeC
Q 027965 112 KASGIKHVNEDRKRG---LDHGAWVPLMLMYP-EADIPVCQLSVQ 152 (216)
Q Consensus 112 ~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p-~~~iPVV~isi~ 152 (216)
++.|+ ++..+.+-| =+|=.+--|+++.. ..++|.+=|.+|
T Consensus 126 ~~~gi-p~~~S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP 169 (215)
T PRK13197 126 REAGI-PASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIP 169 (215)
T ss_pred HHcCC-CceeccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcC
Confidence 99999 465433222 35555555555532 245677777775
No 105
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=24.04 E-value=93 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEeC
Q 027965 41 FLQAWQAKVFSQRPNSILVISA 62 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~ 62 (216)
-+.++.+.+++..|++.|+++.
T Consensus 28 e~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 28 ELPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHHhCCCEEEEEEc
Confidence 4567888888999999999975
No 106
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.97 E-value=4.2e+02 Score=22.22 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCCC-Ccccccc------cCCCCCcHHHHHHHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PKQMYDL------KYPAPGAPELAKRVKDL 110 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~Gf-p~~~~~~------~y~~~gd~~lA~~l~~~ 110 (216)
..+.+.+.+.+.+||+||.++=|.-....++ .+....-.+-|..|. |... .+ .|...=+ .+++++.
T Consensus 48 ~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~-~i~~~gp~~y~ttlp---~~~l~~~ 123 (208)
T PRK13194 48 AREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDE-PIVEGAPAAYFATLP---TREIVEE 123 (208)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCC-cccCCCCCcccCCCC---HHHHHHH
Confidence 3444555555679999999987765544322 222111123343332 1110 00 0111111 5778888
Q ss_pred HHhCCCCcccccCCCC---cccchhhhhhhhccC-CCCCeeEeeeC
Q 027965 111 LKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 152 (216)
Q Consensus 111 l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~-~~iPVV~isi~ 152 (216)
+++.|++ +..+.+-| =.|=.+.-|++.... .+.+.+=|.+|
T Consensus 124 l~~~gip-~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP 168 (208)
T PRK13194 124 LKKNGIP-AVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVP 168 (208)
T ss_pred HHhcCCC-cEEeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcC
Confidence 8999994 65443222 344444455554322 23555556654
No 107
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.85 E-value=4.4e+02 Score=22.10 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEEccCCCccCCCCCC-CcccccccCCCCCcHH----H-HHHHHHH
Q 027965 40 GFLQAWQAKVFSQRPNSILVISAHWDTDFPS---VNVVQRNDTIHDFYGF-PKQMYDLKYPAPGAPE----L-AKRVKDL 110 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~---i~~~~~~~~~~Df~Gf-p~~~~~~~y~~~gd~~----l-A~~l~~~ 110 (216)
++.+.+.+.+.+.+||+||.++=+.-....+ +.+....-.+-|..|. |... .+.-...|... | .+++++.
T Consensus 48 ~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~-~i~~~~~gp~~y~stLpv~~l~~~ 126 (211)
T PRK13196 48 AAMAALSRLLDELQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDT-PVCTEPDAPAAYLSTLPLRAILAA 126 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCC-CcccCCCCccceecCCCHHHHHHH
Confidence 3444555666678999999998665443322 2222111123343332 1110 00000011100 1 4677888
Q ss_pred HHhCCCCcccccCC---CCcccchhhhhhhhccC--CCCCeeEeeeC
Q 027965 111 LKASGIKHVNEDRK---RGLDHGAWVPLMLMYPE--ADIPVCQLSVQ 152 (216)
Q Consensus 111 l~~~g~d~~~~~~~---~~lDHG~~vPL~~l~p~--~~iPVV~isi~ 152 (216)
+++.|+ ++..+.+ +-=.|-.+.-|+++... .++|..=|.++
T Consensus 127 l~~~gi-p~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP 172 (211)
T PRK13196 127 WHDAGI-PGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVP 172 (211)
T ss_pred HHhcCC-CceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcC
Confidence 899999 4654332 33466666666665433 35677777775
No 108
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.61 E-value=1.3e+02 Score=28.39 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeee
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV 151 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi 151 (216)
...++.+|.+.|+++|+|.+-...+=|.=|=+..-+---.....||||+|..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 4568999999999999984444445566666655444444557899999885
No 109
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.60 E-value=1e+02 Score=16.66 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCC
Q 027965 97 APGAPELAKRVKDLLKASGIK 117 (216)
Q Consensus 97 ~~gd~~lA~~l~~~l~~~g~d 117 (216)
-.|+.+.|..+.+..++.|+.
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 367888999999988888873
No 110
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=23.29 E-value=5.1e+02 Score=22.66 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCcccccCCCCcccchh-hhhhhhc---cC-CCCCeeEe-eeCCCCCHHHHHHHHHHhhccccCCeEEEE
Q 027965 106 RVKDLLKASGIKHVNEDRKRGLDHGAW-VPLMLMY---PE-ADIPVCQL-SVQMHHTGTYHYNIGKALAPLKEEGVLIIG 179 (216)
Q Consensus 106 ~l~~~l~~~g~d~~~~~~~~~lDHG~~-vPL~~l~---p~-~~iPVV~i-si~~~~~~~~~~~lG~aL~~~~d~rv~iIa 179 (216)
++++.+.+.|||.+........+++.+ .|+.++- .. ..|.+..- .+....+|.+..+--..|..+.+.|+ .+|
T Consensus 24 ~~a~~AE~lGfd~~w~~Ehh~~~~~~~~~P~~~la~la~~T~rI~lgt~v~~l~~~~P~~~Ae~~AtLd~ls~GR~-~lG 102 (323)
T TIGR03558 24 ELAQHAERLGYHRFWVAEHHNMPGIASSAPEVLIGHIAAATSRIRVGSGGVMLPNHSPLKVAEQFGTLEALYPGRI-DLG 102 (323)
T ss_pred HHHHHHHHcCCCEEEecccCCCCCccCCCHHHHHHHHHHhCCeEEEEeeeeccCCCCHHHHHHHHHHHHHHcCCCE-EEE
Confidence 455666788998554443344454432 3554442 22 34665552 22345667666666666777777773 445
Q ss_pred ec-CCcccccccccCCCCCChhHHHHHHHHHHH
Q 027965 180 SG-SATHNLRALQFESSSISSWALEFDNWLKDA 211 (216)
Q Consensus 180 SG-~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~ 211 (216)
-| +...+.......|........+|++.+...
T Consensus 103 iGrg~g~~~~~~~~~g~~~~~~~~~~~e~l~~l 135 (323)
T TIGR03558 103 LGRAPGTDPLTARALRRGLDARADDFPEQVAEL 135 (323)
T ss_pred eccCCCCchhHHHHhCCCccccHHHHHHHHHHH
Confidence 54 122222121111221223357888776543
No 111
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=22.71 E-value=42 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=12.0
Q ss_pred CeEEEEecCCcccccc
Q 027965 174 GVLIIGSGSATHNLRA 189 (216)
Q Consensus 174 rv~iIaSG~lSH~l~~ 189 (216)
-|.++|||||-==+.+
T Consensus 20 lvGVVGSGdLEVL~ep 35 (98)
T TIGR03130 20 LVGVVGSGDLEVLVEP 35 (98)
T ss_pred EEEEEccCceEEEEEc
Confidence 3899999998655543
No 112
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=22.65 E-value=3.5e+02 Score=20.50 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCC---CCHHHHHHHHHHhhccccCCeE
Q 027965 101 PELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMH---HTGTYHYNIGKALAPLKEEGVL 176 (216)
Q Consensus 101 ~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~---~~~~~~~~lG~aL~~~~d~rv~ 176 (216)
..+|+.|.+.+.+.|++ +....... +... ...+ .+.-.|-+..++. ..+.....|=+.|.. ..++++
T Consensus 15 e~iA~~ia~~l~~~g~~-v~~~~~~~-~~~~------~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-~~k~~a 85 (140)
T TIGR01754 15 EEVAFMIQDYLQKDGHE-VDILHRIG-TLAD------APLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY-KPSNVA 85 (140)
T ss_pred HHHHHHHHHHHhhCCee-EEeccccc-cccc------CcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-cCCEEE
Confidence 56799999999888873 42100000 0000 0001 2344555555321 223444444444433 568999
Q ss_pred EEEecCCc
Q 027965 177 IIGSGSAT 184 (216)
Q Consensus 177 iIaSG~lS 184 (216)
++||||.+
T Consensus 86 vfgtgd~~ 93 (140)
T TIGR01754 86 IFGTGETQ 93 (140)
T ss_pred EEEcCCCC
Confidence 99999743
No 113
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=22.53 E-value=1.6e+02 Score=27.46 Aligned_cols=54 Identities=24% Similarity=0.095 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHhhcc----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHc
Q 027965 155 HTGTYHYNIGKALAPL----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 214 (216)
Q Consensus 155 ~~~~~~~~lG~aL~~~----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~ 214 (216)
.+++++.++|+.|++- ...-.++|=.||+|+.=.+..+. + +++-|+.+.+.|++
T Consensus 312 tt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~S~~d~~G~~f---~---Dpead~al~~~l~~ 369 (403)
T PF06792_consen 312 TTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGVSALDRPGGPF---Y---DPEADEALFDALRE 369 (403)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCcccCCCCCcC---c---ChhHHHHHHHHHHH
Confidence 4689999999998773 23446888999999976655431 2 34445555555543
No 114
>PLN02757 sirohydrochlorine ferrochelatase
Probab=22.41 E-value=1.7e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=18.8
Q ss_pred cEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 027965 19 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFS 51 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 51 (216)
-+++++|||. + ..+.+.++++.+.+++
T Consensus 15 ~lllvgHGSr-----d-~~a~~~~~~la~~l~~ 41 (154)
T PLN02757 15 GVVIVDHGSR-----R-KESNLMLEEFVAMYKQ 41 (154)
T ss_pred EEEEEeCCCC-----C-HHHHHHHHHHHHHHHh
Confidence 4678899993 3 3456777888877753
No 115
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=22.37 E-value=43 Score=25.03 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=11.2
Q ss_pred CeEEEEecCCccccc
Q 027965 174 GVLIIGSGSATHNLR 188 (216)
Q Consensus 174 rv~iIaSG~lSH~l~ 188 (216)
-|.++|||||-==+.
T Consensus 19 lvGVVGSGdLEVL~e 33 (99)
T PRK01220 19 LVGVVGSGDLEVLLE 33 (99)
T ss_pred EEEEEccCceEEEEE
Confidence 378999999854443
No 116
>PRK00170 azoreductase; Reviewed
Probab=22.24 E-value=1.1e+02 Score=24.66 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC-CCCC
Q 027965 40 GFLQAWQAKVFSQRPNSILVISA-HWDT 66 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVviS~-H~~~ 66 (216)
+.++++.+++.+ -|+||+.|| +|..
T Consensus 75 d~~~~l~~~i~~--AD~iV~~sP~y~~~ 100 (201)
T PRK00170 75 ALSDELLEEFLA--ADKIVIAAPMYNFS 100 (201)
T ss_pred HHHHHHHHHHHH--CCEEEEeecccccC
Confidence 456666666644 599999999 6654
No 117
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=22.19 E-value=4.8e+02 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHhhcc--ccCCeEEEEecCCcc
Q 027965 163 IGKALAPL--KEEGVLIIGSGSATH 185 (216)
Q Consensus 163 lG~aL~~~--~d~rv~iIaSG~lSH 185 (216)
.-+.+.+. ..++|+++.+||.+-
T Consensus 87 ~~~~i~~~~~~G~~Vv~L~~GDP~i 111 (241)
T PRK05990 87 SAEAVAAHLDAGRDVAVICEGDPFF 111 (241)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCcHH
Confidence 33444444 247899999999754
No 118
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=21.92 E-value=1.1e+02 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCC
Q 027965 41 FLQAWQAKVFSQRPNSILVISAH 63 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H 63 (216)
.++++.+++.+ -|+||+.||=
T Consensus 55 ~~~~l~~~i~~--AD~iI~~sP~ 75 (171)
T TIGR03567 55 AIKAATAQVAQ--ADGVVVATPV 75 (171)
T ss_pred HHHHHHHHHHH--CCEEEEECCc
Confidence 45566666533 4788888873
No 119
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.80 E-value=1.5e+02 Score=19.28 Aligned_cols=27 Identities=4% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 144 IPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 144 iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
.|+|.|.+..+.+.++--+|.++|.++
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a 27 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEV 27 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 389999998888999999999998886
No 120
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.62 E-value=1.1e+02 Score=26.11 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCCeeEeeeCCCCC---HHHHHHHHHHhhccccCCeEEEEecCCccc
Q 027965 142 ADIPVCQLSVQMHHT---GTYHYNIGKALAPLKEEGVLIIGSGSATHN 186 (216)
Q Consensus 142 ~~iPVV~isi~~~~~---~~~~~~lG~aL~~~~d~rv~iIaSG~lSH~ 186 (216)
...-||-+|...... ....-.|-++++++.+++++|++|.+=+..
T Consensus 101 ~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~ 148 (247)
T cd07491 101 KKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGA 148 (247)
T ss_pred CCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 356788888732211 123567788999988899999988775543
No 121
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.58 E-value=60 Score=26.77 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=15.3
Q ss_pred HHHHHhhcCCCCEEEEEeCC
Q 027965 44 AWQAKVFSQRPNSILVISAH 63 (216)
Q Consensus 44 ~l~~~l~~~~Pd~IVviS~H 63 (216)
++.+.+++.+||.||+++=.
T Consensus 70 ~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHHHHhcCCCEEEEeCcc
Confidence 55666777899999998743
No 122
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.39 E-value=1.7e+02 Score=26.59 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=20.6
Q ss_pred CcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 027965 16 SVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFS 51 (216)
Q Consensus 16 ~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 51 (216)
+....++++||| .. ..+.+.++++.+.+++
T Consensus 5 ~~~aiLLvgHGS-----Rd-p~~~~~~~~La~~l~~ 34 (335)
T PRK05782 5 SNTAIILIGHGS-----RR-ETFNSDMEGMANYLKE 34 (335)
T ss_pred CCceEEEEecCC-----CC-hHHHHHHHHHHHHHHh
Confidence 344678899999 23 3566777888777753
No 123
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.33 E-value=1.5e+02 Score=19.03 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=23.3
Q ss_pred CCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 144 IPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 144 iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
.|+|.|.+..+.+.++--+|.++|.++
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~ 27 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRV 27 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 389999987778999999999998885
No 124
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.31 E-value=2.6e+02 Score=25.12 Aligned_cols=30 Identities=10% Similarity=-0.120 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027965 36 LPARGFLQAWQAKVFSQRPNSILVISAHWD 65 (216)
Q Consensus 36 ~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~ 65 (216)
+...+.+.+.++..++...|.|=+-.+|.+
T Consensus 138 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGy 167 (337)
T PRK13523 138 KETVLAFKQAAVRAKEAGFDVIEIHGAHGY 167 (337)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 355566666677777889999999988854
No 125
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=21.29 E-value=1.4e+02 Score=19.49 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 144 IPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 144 iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
.|+|.|.+....+.++--+|.++|.++
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~ 27 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEA 27 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 389999987778998888888888775
No 126
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.20 E-value=97 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcCCCCEEEEE
Q 027965 41 FLQAWQAKVFSQRPNSILVI 60 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVvi 60 (216)
..+++.+.+++.+||+||..
T Consensus 77 ~~~~l~~~l~~~~PD~IIsT 96 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIIST 96 (169)
T ss_pred HHHHHHHHHhhcCCCEEEEC
Confidence 34566777789999976654
No 127
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=21.03 E-value=1.3e+02 Score=27.62 Aligned_cols=25 Identities=8% Similarity=0.402 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEE-eCCC
Q 027965 40 GFLQAWQAKVFSQRPNSILVI-SAHW 64 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVvi-S~H~ 64 (216)
+.++++.+.+.+.+||++|.| +|.+
T Consensus 69 ~~~~~~~~~~~~~~pd~vIlID~pgF 94 (373)
T PF02684_consen 69 RLFRKLVERIKEEKPDVVILIDYPGF 94 (373)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 445555666678999999999 5655
No 128
>PRK06988 putative formyltransferase; Provisional
Probab=20.83 E-value=56 Score=29.05 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCC--------CeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCC
Q 027965 45 WQAKVFSQRPNSILVISAHWDTDF--------PSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI 116 (216)
Q Consensus 45 l~~~l~~~~Pd~IVviS~H~~~~~--------~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~ 116 (216)
+.+.+++.+||.||+++=.+.-.. -.|++ .+.+. | .+.|-..+-+.|.+.-++.|+
T Consensus 69 ~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNi--HpslL------P--------~yRG~~pi~~ai~~g~~~tGv 132 (312)
T PRK06988 69 LRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNM--HGSLL------P--------KYRGRVPVNWAVLNGETETGA 132 (312)
T ss_pred HHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEe--eCccc------c--------CCCCcCHHHHHHHcCCCceEE
Confidence 344566789999988874332211 12333 22211 2 235555566777766566676
Q ss_pred CcccccCCCCcccch
Q 027965 117 KHVNEDRKRGLDHGA 131 (216)
Q Consensus 117 d~~~~~~~~~lDHG~ 131 (216)
++.. .+-++|.|-
T Consensus 133 -Tih~-~~~~~D~G~ 145 (312)
T PRK06988 133 -TLHE-MVAKPDAGA 145 (312)
T ss_pred -EEEE-ECCCCCCCC
Confidence 3432 234677776
No 129
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=20.54 E-value=1.1e+02 Score=22.50 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCccccc
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVNED 122 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~~~ 122 (216)
-+.|.-++|++|++.+++.|+ ++..+
T Consensus 26 vA~G~G~iAe~II~~Ake~~V-pi~ed 51 (92)
T COG2257 26 VASGKGEIAEKIIEKAKEHGV-PIQED 51 (92)
T ss_pred EeecchHHHHHHHHHHHHcCC-CcccC
Confidence 678999999999999999999 67654
No 130
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=20.53 E-value=50 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=11.4
Q ss_pred CeEEEEecCCccccc
Q 027965 174 GVLIIGSGSATHNLR 188 (216)
Q Consensus 174 rv~iIaSG~lSH~l~ 188 (216)
-|.|+|||||-==+.
T Consensus 22 lvGVVgSGdLEVL~e 36 (105)
T PRK02103 22 LVGVVASGNLEVLVE 36 (105)
T ss_pred EEEEEccCceEEEEe
Confidence 489999999865443
No 131
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.20 E-value=1.7e+02 Score=18.74 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.9
Q ss_pred CCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 144 IPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 144 iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
.|+|.|.+..+.+.++--+|-++|.+.
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~ 27 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAA 27 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 389999987788999988888888775
No 132
>TIGR03751 conj_TIGR03751 conjugative transfer region lipoprotein, TIGR03751 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.18 E-value=1.5e+02 Score=22.77 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHHhh-cCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCc
Q 027965 40 GFLQAWQAKVF-SQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGA 100 (216)
Q Consensus 40 ~~l~~l~~~l~-~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd 100 (216)
.+..++.+... ..+||.|+.|-||--..... -+ +...+..-||. +++|..||.
T Consensus 61 ta~nei~~~F~RLPNPdlvMYVfPHLa~~~~~-PV-PGYsTvFp~Y~------rvQYAlPGE 114 (116)
T TIGR03751 61 TAENEIQQLFPRLPNPDLVMYVFPHLAGGDPT-PV-PGYSTVFPFYK------QVQYALPGE 114 (116)
T ss_pred HHHhHHHHhccCCCCCCeEEEEeeeecCCCCc-cc-CCeeEeeeccc------cceeccCCC
Confidence 34555655553 57999999999997532211 11 22233333332 367777774
Done!