Query 027965
Match_columns 216
No_of_seqs 129 out of 1075
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pw6_A Uncharacterized protein 100.0 1.1E-58 3.9E-63 402.3 16.0 196 15-215 12-209 (271)
2 3vsj_B 2-amino-5-chlorophenol 100.0 7.8E-43 2.7E-47 308.2 12.9 179 36-216 35-233 (312)
3 3vsj_A 2-amino-5-chlorophenol 100.0 7.9E-42 2.7E-46 295.8 15.9 193 20-216 6-213 (271)
4 1b4u_B LIGA, LIGB, protocatech 100.0 2E-39 6.8E-44 285.2 12.0 182 20-216 7-220 (302)
5 3bcz_A Protein MEMO1; alpha/be 99.7 3.8E-16 1.3E-20 136.3 10.5 169 20-216 40-224 (293)
6 1yqe_A Hypothetical UPF0204 pr 78.7 30 0.001 29.4 11.7 117 53-188 70-201 (282)
7 2gfq_A UPF0204 protein PH0006; 78.5 14 0.00047 31.8 9.6 118 51-187 90-223 (298)
8 2odf_A AGR_C_3887P, hypothetic 61.3 8.4 0.00029 32.2 4.3 69 100-170 176-247 (257)
9 2xws_A Sirohydrochlorin cobalt 53.6 15 0.00053 26.5 4.2 31 18-54 4-34 (133)
10 2q7s_A N-formylglutamate amido 52.9 9.1 0.00031 32.6 3.2 71 96-170 200-278 (290)
11 2q5c_A NTRC family transcripti 50.2 18 0.00063 28.6 4.4 46 137-189 64-111 (196)
12 1tjn_A Sirohydrochlorin cobalt 45.6 23 0.00077 26.9 4.2 31 18-54 25-55 (156)
13 2pju_A Propionate catabolism o 45.2 29 0.001 28.2 5.0 45 137-188 76-122 (225)
14 1bvy_F Protein (cytochrome P45 44.0 90 0.0031 24.3 7.6 74 100-185 35-116 (191)
15 3qe2_A CPR, P450R, NADPH--cyto 36.9 73 0.0025 29.7 6.9 81 100-185 32-119 (618)
16 1fj2_A Protein (acyl protein t 36.7 38 0.0013 25.4 4.3 26 2-28 8-33 (232)
17 3f6r_A Flavodoxin; FMN binding 33.4 1.3E+02 0.0045 21.5 8.2 77 100-185 15-98 (148)
18 3lyh_A Cobalamin (vitamin B12) 33.4 49 0.0017 23.6 4.2 29 18-52 6-34 (126)
19 3m95_A Autophagy related prote 33.4 7 0.00024 29.3 -0.6 55 4-62 35-89 (125)
20 3u0v_A Lysophospholipase-like 32.3 31 0.001 26.3 3.0 15 13-27 18-32 (239)
21 2xwp_A Sirohydrochlorin cobalt 30.9 47 0.0016 27.2 4.1 34 19-58 4-38 (264)
22 4gxh_A Pyrrolidone-carboxylate 30.9 2.1E+02 0.007 23.0 8.6 104 40-152 49-170 (216)
23 4fb5_A Probable oxidoreductase 30.3 14 0.00048 31.4 0.7 61 45-116 86-146 (393)
24 3rui_B Autophagy-related prote 29.1 12 0.0004 27.7 -0.0 55 4-62 29-83 (118)
25 3egc_A Putative ribose operon 28.2 2.2E+02 0.0074 22.4 8.2 77 100-181 49-134 (291)
26 3jy6_A Transcriptional regulat 28.2 2.1E+02 0.0073 22.3 7.8 43 140-182 82-133 (276)
27 3ro0_A Pyrrolidone-carboxylate 27.5 2.4E+02 0.0083 22.7 8.8 103 41-152 50-170 (223)
28 3tb6_A Arabinose metabolism tr 26.8 2.3E+02 0.0078 22.1 8.1 78 100-180 56-145 (298)
29 1x10_A Pyrrolidone-carboxylate 26.3 2.4E+02 0.0083 22.3 7.5 102 41-152 48-168 (208)
30 2xvy_A Chelatase, putative; me 25.7 38 0.0013 27.7 2.6 19 96-114 120-138 (269)
31 3h9d_A ATG8, microtubule-assoc 25.6 12 0.0004 27.8 -0.5 50 4-61 30-83 (119)
32 4hps_A Pyrrolidone-carboxylate 24.8 2E+02 0.0068 23.3 6.8 103 41-152 71-191 (228)
33 3gve_A YFKN protein; alpha-bet 24.6 62 0.0021 27.7 3.9 27 39-66 193-219 (341)
34 3jyf_A 2',3'-cyclic nucleotide 24.2 64 0.0022 27.7 3.9 26 39-65 187-212 (339)
35 3rot_A ABC sugar transporter, 23.4 1E+02 0.0035 24.6 4.8 78 100-180 46-138 (297)
36 3gbv_A Putative LACI-family tr 22.2 2.8E+02 0.0097 21.6 7.4 78 100-180 54-143 (304)
37 3m20_A 4-oxalocrotonate tautom 22.1 90 0.0031 19.3 3.4 25 145-170 1-25 (62)
38 3huu_A Transcription regulator 21.7 3E+02 0.01 21.8 8.2 78 98-180 66-152 (305)
39 1o51_A Hypothetical protein TM 21.7 2.3E+02 0.0078 20.3 7.1 74 102-178 30-105 (114)
40 2zjd_A Microtubule-associated 21.5 22 0.00075 26.7 0.3 55 4-62 34-90 (130)
41 3hr4_A Nitric oxide synthase, 20.5 2.8E+02 0.0094 22.2 6.8 74 100-185 54-135 (219)
42 4dik_A Flavoprotein; TM0755, e 20.4 2.8E+02 0.0097 24.2 7.4 78 101-184 280-364 (410)
43 5nul_A Flavodoxin; electron tr 20.3 1.7E+02 0.0059 20.5 5.1 75 100-184 12-91 (138)
No 1
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=100.00 E-value=1.1e-58 Score=402.29 Aligned_cols=196 Identities=38% Similarity=0.756 Sum_probs=166.5
Q ss_pred cCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCccccccc
Q 027965 15 LSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLK 94 (216)
Q Consensus 15 ~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~ 94 (216)
..++|++|+|||||++.+++ +.+.++++++++++. +||+||||||||++..++|++.+.++++|||+|||+++|+++
T Consensus 12 ~~~~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~ 88 (271)
T 2pw6_A 12 STRMPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTH 88 (271)
T ss_dssp --CCCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCC
T ss_pred CCcCCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCcccc
Confidence 34799999999999999854 578899999999985 999999999999999999998888899999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCC
Q 027965 95 YPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEG 174 (216)
Q Consensus 95 y~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~r 174 (216)
|+++||++||++|++.|.++||+ +.. .++++|||+|+||++|+|++|+||||||+|...++++||+||++|++++++|
T Consensus 89 y~~~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~ 166 (271)
T 2pw6_A 89 YPAPGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEG 166 (271)
T ss_dssp CCCCBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999995 544 6799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcccccccccCC-CCCChhHHHHHHHHHHHHH-cC
Q 027965 175 VLIIGSGSATHNLRALQFES-SSISSWALEFDNWLKDALL-EG 215 (216)
Q Consensus 175 v~iIaSG~lSH~l~~~~~~~-~~~~~~~~~FD~~v~~~l~-~g 215 (216)
|+|||||++||||...++.+ .+..+|+.+||+|++++|+ +|
T Consensus 167 VlIigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g 209 (271)
T 2pw6_A 167 IMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQG 209 (271)
T ss_dssp EEEEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCS
T ss_pred cEEEEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcC
Confidence 99999999999999887632 2456999999999999998 76
No 2
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=100.00 E-value=7.8e-43 Score=308.17 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhC
Q 027965 36 LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS 114 (216)
Q Consensus 36 ~~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~ 114 (216)
++++++|+++++++.+.+||+||||||||.+..+.+.+.. .....+|+++||. .++++|+++||++||++|.+.+.+.
T Consensus 35 ~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f~~-f~~~~y~~~gd~eLA~~i~~~l~~~ 113 (312)
T 3vsj_B 35 EVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIFPN-VFRYDFSLNVDVELAEACAEEGRKA 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSCTT-TCEEEEEEEBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCCCc-cCcccCCCCCCHHHHHHHHHHHHHc
Confidence 4678999999999988899999999999999887665522 1233556666663 3589999999999999999999999
Q ss_pred CCCcccc--cCCCCcccchhhhhhhhccCCCCCeeEeeeCC---CCCHH----HHHHHHHHhhccc---cCCeEEEEecC
Q 027965 115 GIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGT----YHYNIGKALAPLK---EEGVLIIGSGS 182 (216)
Q Consensus 115 g~d~~~~--~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~---~~~~~----~~~~lG~aL~~~~---d~rv~iIaSG~ 182 (216)
||| +.. +.++++|||+||||+||+|+.++||||||+|. ..+++ +||+||++|+++. ++||+||||||
T Consensus 114 g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~ 192 (312)
T 3vsj_B 114 GLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAIRKTGRKAVLLASNT 192 (312)
T ss_dssp TCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECc
Confidence 996 543 66899999999999999999999999999985 48888 9999999999973 79999999999
Q ss_pred CcccccccccC---C----CCCChhHHHHHHHHHHHHHcCC
Q 027965 183 ATHNLRALQFE---S----SSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 183 lSH~l~~~~~~---~----~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
+|||+...++. + .++.+|+.+||+|++++|++||
T Consensus 193 lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD 233 (312)
T 3vsj_B 193 LSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGK 233 (312)
T ss_dssp SCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCC
Confidence 99999864431 1 2356899999999999999987
No 3
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=100.00 E-value=7.9e-42 Score=295.81 Aligned_cols=193 Identities=16% Similarity=0.195 Sum_probs=163.6
Q ss_pred EEEEcCCCCC--CCCCCCh---hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEEcc-CCCccCCCCCCCcccccc
Q 027965 20 TFFISHGSPT--LSIDESL---PARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDL 93 (216)
Q Consensus 20 ~~fisHG~P~--~~~~~~~---~~~~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~ 93 (216)
++++|| || +++++.. +++++++++++++.+.+||+||||||||.+..+.++++. .....+++++|+ .++++
T Consensus 6 a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~ 82 (271)
T 3vsj_A 6 AFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDL 82 (271)
T ss_dssp EEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCE
T ss_pred EEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhccc
Confidence 577899 77 7776663 567889999999988999999999999999888776632 234556777777 56789
Q ss_pred cCCCCCcHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhccCCC-CCeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 94 KYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEAD-IPVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 94 ~y~~~gd~~lA~~l~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~-iPVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
+|+++||++||++|.+.+.+.||| +. .+.++++|||+||||+||+|+.+ +|||||++|...++++|++||++|+++
T Consensus 83 ~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al~~~ 161 (271)
T 3vsj_A 83 AYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALAVDC 161 (271)
T ss_dssp EEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999996 43 35689999999999999999976 999999998899999999999999997
Q ss_pred c---cCCeEEEEecCCcccccccccC---CCCCChhHHHHHHHHHHHHHcCC
Q 027965 171 K---EEGVLIIGSGSATHNLRALQFE---SSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 171 ~---d~rv~iIaSG~lSH~l~~~~~~---~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
. ++||+||||||+|||+....+. ..++.+|+.+||+|++++|++||
T Consensus 162 ~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D 213 (271)
T 3vsj_A 162 AKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGD 213 (271)
T ss_dssp HHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCC
Confidence 3 7999999999999999643321 12346899999999999999987
No 4
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=100.00 E-value=2e-39 Score=285.21 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=147.7
Q ss_pred EEEEcCCCCCCCCC-------CC---hhHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCC--C-----CeEEEccCCCcc
Q 027965 20 TFFISHGSPTLSID-------ES---LPARGFLQAWQAKVFS--QRPNSILVISAHWDTD--F-----PSVNVVQRNDTI 80 (216)
Q Consensus 20 ~~fisHG~P~~~~~-------~~---~~~~~~l~~l~~~l~~--~~Pd~IVviS~H~~~~--~-----~~i~~~~~~~~~ 80 (216)
.+++|| ||+++. +. +++.++++++++++++ .+||+||||||||.+. . ++|+....++ +
T Consensus 7 ~~~~sH--~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~-~ 83 (302)
T 1b4u_B 7 GITSSH--IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFK-P 83 (302)
T ss_dssp EEEECC--CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEEC-B
T ss_pred EeECCC--CCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCc-c
Confidence 467899 554431 11 3678899999999988 8999999999954432 2 3455544455 7
Q ss_pred CCCCCCCcccccccC-CCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCC---CCeeEeeeCCCC-
Q 027965 81 HDFYGFPKQMYDLKY-PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH- 155 (216)
Q Consensus 81 ~Df~Gfp~~~~~~~y-~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPVV~isi~~~~- 155 (216)
+||+++| .+| +++||++||++|.+.+.+.||| +..+.++++|||+||||+||+|+.+ +||||||+|...
T Consensus 84 ~d~~~G~-----~~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~ 157 (302)
T 1b4u_B 84 ADEGWGP-----RPVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTY 157 (302)
T ss_dssp CBCSSSB-----CSSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSS
T ss_pred CcccCCC-----cCCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCC
Confidence 9986545 356 8999999999999999999996 6555679999999999999999987 999999998765
Q ss_pred ---CHHHHHHHHHHhhcc-----ccCCeEEEEecCCcccccccccCCCCCChhHHHHHHHHHHHHHcCC
Q 027965 156 ---TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 156 ---~~~~~~~lG~aL~~~-----~d~rv~iIaSG~lSH~l~~~~~~~~~~~~~~~~FD~~v~~~l~~g~ 216 (216)
++++||+||++|+++ +++||+||||||||||+...+. + .|+.+||+|+++.| +||
T Consensus 158 p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~-g----~~~~~fD~~~~~~l-~~d 220 (302)
T 1b4u_B 158 PPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRA-G----LINKEFDLNFIDKL-ISD 220 (302)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTT-T----BCCHHHHHHHHHHH-HHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcC-c----cchHHHHHHHHHHH-ccC
Confidence 469999999999987 5789999999999999986543 2 47899999999999 765
No 5
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=99.65 E-value=3.8e-16 Score=136.34 Aligned_cols=169 Identities=10% Similarity=-0.026 Sum_probs=114.0
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCCCCeEEEccCCCccCCCCCCCcccccccCCCC
Q 027965 20 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP 98 (216)
Q Consensus 20 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~-H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~ 98 (216)
++.+||.+-.... .-+..+++.+ ...+||+|||++| |..... .+.+..... | ..|-. +++
T Consensus 40 ~iI~PHAGy~ysG---~~aa~ay~~l----~~~~p~~VvilGP~H~~~~~-~~a~~~~~~----~-~TPlG------~l~ 100 (293)
T 3bcz_A 40 AIIAPHAGYTYCG---SCAAHAYKQV----DPSITRRIFILGPSHHVPLS-RCALSSVDI----Y-RTPLY------DLR 100 (293)
T ss_dssp EEEECCSCHHHHH---HHHHHHHTTC----CTTTCCEEEEEEECSSSCCS-SEEECSCSE----E-CCSSC------CEE
T ss_pred EEEECCCCccccH---HHHHHHHHHh----ccCCCCEEEEECCCCCCCCC-ceEEccCCc----e-ECCCc------cCC
Confidence 5788995522111 1112333333 2468999999999 876543 354432222 2 22322 456
Q ss_pred CcHHHHHHHHHHHHhCCCCccccc-CCCCcccchhhhhhhhccC-----CCCCeeEeeeCCCCCHHHHHHHHHHhhccc-
Q 027965 99 GAPELAKRVKDLLKASGIKHVNED-RKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQMHHTGTYHYNIGKALAPLK- 171 (216)
Q Consensus 99 gd~~lA~~l~~~l~~~g~d~~~~~-~~~~lDHG~~vPL~~l~p~-----~~iPVV~isi~~~~~~~~~~~lG~aL~~~~- 171 (216)
.|.+++++|.+.. .+ ...+ .....+|++-|+|-||..- .++|||||.++ ..+++++++||++|+++.
T Consensus 101 vD~el~~~L~~~~---~~--~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~ 174 (293)
T 3bcz_A 101 IDQKIYGELWKTG---MF--ERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLA 174 (293)
T ss_dssp BCHHHHHHHHHTS---CE--EECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcC---Cc--ccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHh
Confidence 6999998886542 22 1121 2245799999999998542 37999999995 588999999999999985
Q ss_pred cCCeEEEEecCCcccccccccCCCC--------CChhHHHHHHHHHHHHHcCC
Q 027965 172 EEGVLIIGSGSATHNLRALQFESSS--------ISSWALEFDNWLKDALLEGR 216 (216)
Q Consensus 172 d~rv~iIaSG~lSH~l~~~~~~~~~--------~~~~~~~FD~~v~~~l~~g~ 216 (216)
+.+++||+|||+||+-. ++|+. ..+++++||+.+++.|+++|
T Consensus 175 ~~~~l~V~SsDlsH~g~---~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d 224 (293)
T 3bcz_A 175 DPSNLFVVSSDFCHWGQ---RFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLD 224 (293)
T ss_dssp CTTEEEEEECCCCEEBG---GGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCccCCCC---CCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Confidence 45999999999999832 22322 12568999999999999986
No 6
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=78.66 E-value=30 Score=29.41 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCC-CCCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhC-----CCCcccccCCC
Q 027965 53 RPNSILVISAHWD-TDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS-----GIKHVNEDRKR 125 (216)
Q Consensus 53 ~Pd~IVviS~H~~-~~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~-----g~d~~~~~~~~ 125 (216)
.+|.||++|=|-- ...+.+|+-. .+-...+|+|-|.+ -++.+|.+...+.+.+++. +|+ +....+
T Consensus 70 g~d~iIflSRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~------la~a~P~~~~~~L~~l~~~~~~~~~fe-v~~EAT- 141 (282)
T 1yqe_A 70 DFEEILFASRHSSKDGRKIFTVHVSGNVGTADFGGKPYS------LAKPSPQTMKNYVLALRERLDRKPEFE-FTMEVT- 141 (282)
T ss_dssp CCSEEEEEEEEECTTCCCEEEEECCBCSSCCTTSSCTTC------BCCBCHHHHHHHHHHHHTTGGGSTTCE-EEECCS-
T ss_pred CCCEEEEEeccccCCCCceEEEeCCCCCCccccCCCCCc------cccCCHHHHHHHHHHHHHHhccCCCcE-EEEEcc-
Confidence 4799999999976 3456666532 12235668898887 4577899988888888765 342 333322
Q ss_pred CcccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHHHHHHHhhcccc----CCeEEEEecCCccccc
Q 027965 126 GLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHYNIGKALAPLKE----EGVLIIGSGSATHNLR 188 (216)
Q Consensus 126 ~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~~lG~aL~~~~d----~rv~iIaSG~lSH~l~ 188 (216)
=||- -+.++|.+=|=|-+. -+++.+-.+.+++-++.+ +...+||-||. |-..
T Consensus 142 --HHGP--------t~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~~~~~~~~~~ig~GGg-HYap 201 (282)
T 1yqe_A 142 --HHGP--------SEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRAEKMDWNVAVGVGGT-HYAP 201 (282)
T ss_dssp --CSSC--------CCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHCCCCCCEEEEEECSC-TTCH
T ss_pred --ccCC--------CCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccccccCCEEEEeCCC-CcCh
Confidence 2543 126788777777333 345666666666655532 44678888886 5443
No 7
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=78.51 E-value=14 Score=31.77 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred cCCCCEEEEEeCCCCC-CCCeEEEcc-CCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhC---CCCcccccCCC
Q 027965 51 SQRPNSILVISAHWDT-DFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS---GIKHVNEDRKR 125 (216)
Q Consensus 51 ~~~Pd~IVviS~H~~~-~~~~i~~~~-~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~---g~d~~~~~~~~ 125 (216)
-.++|.||++|=|--. ..+.+|+-. .+-...+|+|-|.+ -++.+|.+...+.+.+++. +|+ +....+
T Consensus 90 g~~~d~iIflSRH~s~~~~p~LTvH~tGN~g~a~~GG~p~~------la~a~P~~~~~lLr~l~~~~~~~fe-vt~EAT- 161 (298)
T 2gfq_A 90 GFKPEIIAFASRHSSKQKLPALTTHVTGNWGKAMYGGKDES------FAVAIPSAMKLSLLKMSELNDLGWT-VCYEAT- 161 (298)
T ss_dssp SCCCSEEEEEEEEECSSCCCEEEEECCEESSCCSSSSCTTE------ECBBCHHHHHHHHHHHHHHCCSCCE-EEECCS-
T ss_pred cCCCcEEEEEeccccCCCCceEEEeCCCCCCccccCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCE-EEEecc-
Confidence 3469999999999763 456665532 11135668898887 3566888888887777654 453 443332
Q ss_pred CcccchhhhhhhhccCCCCCeeEeeeCCC----CCHHHHHHHHHHhhcccc-------CCeEEEEecCCcccc
Q 027965 126 GLDHGAWVPLMLMYPEADIPVCQLSVQMH----HTGTYHYNIGKALAPLKE-------EGVLIIGSGSATHNL 187 (216)
Q Consensus 126 ~lDHG~~vPL~~l~p~~~iPVV~isi~~~----~~~~~~~~lG~aL~~~~d-------~rv~iIaSG~lSH~l 187 (216)
=||- -+.++|.+=|=|-+. -+++.+-.+.+++-++.+ +...+||-||. |-.
T Consensus 162 --HHGP--------t~l~~Ps~FVEIGSte~eW~d~~A~~~vA~av~~~l~~~~~~~~~~~~~iG~GGg-HYa 223 (298)
T 2gfq_A 162 --HHGP--------TELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGG-HYA 223 (298)
T ss_dssp --CSSC--------CCCCSBEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECSC-TTC
T ss_pred --ccCC--------CCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccchhcccCCCEEEEeCCC-CcC
Confidence 2553 125788777776333 345556666666555532 45678898886 544
No 8
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics, unknown FUNC PSI-2, MCSG, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Probab=61.25 E-value=8.4 Score=32.20 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhh-hhhccCCCCCeeEeeeCC--CCCHHHHHHHHHHhhcc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPL-MLMYPEADIPVCQLSVQM--HHTGTYHYNIGKALAPL 170 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL-~~l~p~~~iPVV~isi~~--~~~~~~~~~lG~aL~~~ 170 (216)
++++++.+.+.|++.|+ .+..+..+.-.+++.-.+ +|=.| ..++.|+|-++. .++.....++.+.|+++
T Consensus 176 ~~~l~~~~~~~l~~~g~-~v~~N~Py~G~~~~~~~~~~~g~~-~g~~avqiEi~~~lymde~~~~~~a~~l~~~ 247 (257)
T 2odf_A 176 DSRLADAMLAGAEGASL-TVRRNDPYGPEDGVTHTLRLHALP-DGLLNVMIEIRNDLIANEGEQAAIAGFLHEL 247 (257)
T ss_dssp CCHHHHHHHHHTTTCSS-CEEETCSCCGGGTTTHHHHHHTGG-GTCEEEEEEEEGGGGSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCCCCcCCCCCCeeeHhhcCc-CCceEEEEEEehhhhcCCcchhHHHHHHHHH
Confidence 78899999999998888 476665554344433333 33334 789999999964 35666555556666554
No 9
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=53.59 E-value=15 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 18 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 18 ~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
..+++++||| .. ..+.+.++++.+.+++..+
T Consensus 4 ~alllv~HGS-----~~-~~~~~~~~~la~~l~~~~~ 34 (133)
T 2xws_A 4 RGLVIVGHGS-----QL-NHYREVMELHRKRIEESGA 34 (133)
T ss_dssp EEEEEEECSC-----CC-HHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEECCC-----CC-HHHHHHHHHHHHHHHhhCC
Confidence 3578999999 22 3456678888888765444
No 10
>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.00A {Ralstonia eutropha} SCOP: c.56.5.9
Probab=52.93 E-value=9.1 Score=32.61 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC--CC------HHHHHHHHHHh
Q 027965 96 PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH--HT------GTYHYNIGKAL 167 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~--~~------~~~~~~lG~aL 167 (216)
...-+++|++.+.+.|++.|+ .+..+..+. |.++-=+|=.|...++.|||-++.. ++ .....+|.+.|
T Consensus 200 g~s~~~~l~~~~~~~l~~~g~-~v~~N~Py~---Gg~it~~yg~P~~g~~aiqiEi~~~lymde~~~~~~~~~~~l~~~L 275 (290)
T 2q7s_A 200 GTTCEPGLVDLVERELREKGY-TVARNDPYK---GVQLIAQIGRPAERRNSLQIEIRRPLYMEEGTRERNEGFATLQRDL 275 (290)
T ss_dssp TTSSCHHHHHHHHHHHHHTTC-CEEESSSCC---C-CHHHHHCBGGGTEEEEEEEEEGGGTEETTTTEECTHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhhcCC-EEEeCCCcC---cchhHHhhCCCCCCcEEEEEEEchhhhcCCCcccCchHHHHHHHHH
Confidence 344589999999999999999 466655443 4555445556778899999999632 22 23444566666
Q ss_pred hcc
Q 027965 168 APL 170 (216)
Q Consensus 168 ~~~ 170 (216)
+.+
T Consensus 276 ~~~ 278 (290)
T 2q7s_A 276 TLL 278 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 11
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=50.22 E-value=18 Score=28.57 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred hhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhcccc--CCeEEEEecCCcccccc
Q 027965 137 LMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGVLIIGSGSATHNLRA 189 (216)
Q Consensus 137 ~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d--~rv~iIaSG~lSH~l~~ 189 (216)
++....++|||.|.+. .|++=++|.++++ .+|+|||.+.....+..
T Consensus 64 ~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~ 111 (196)
T 2q5c_A 64 YIKKSVSIPSISIKVT-------RFDTMRAVYNAKRFGNELALIAYKHSIVDKHE 111 (196)
T ss_dssp HHHTTCSSCEEEECCC-------HHHHHHHHHHHGGGCSEEEEEEESSCSSCHHH
T ss_pred HHHHhCCCCEEEEcCC-------HhHHHHHHHHHHhhCCcEEEEeCcchhhHHHH
Confidence 3445568999999973 3677777777754 78999999998877653
No 12
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=45.61 E-value=23 Score=26.87 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 027965 18 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 54 (216)
Q Consensus 18 ~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 54 (216)
..++++.|||. . ..+.+.++++.+.+++..+
T Consensus 25 ~avlLv~HGS~-----~-p~~~~~~~~la~~l~~~~~ 55 (156)
T 1tjn_A 25 RGLVIVGHGSQ-----L-NHYREVMELHRKRIEESGA 55 (156)
T ss_dssp EEEEEEECCTT-----S-TTHHHHHHHHHHHHHHHTS
T ss_pred cCEEEEECCCC-----C-HHHHHHHHHHHHHHHhhCC
Confidence 46899999993 2 2355677788877765444
No 13
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=45.23 E-value=29 Score=28.23 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=34.6
Q ss_pred hhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhcccc--CCeEEEEecCCccccc
Q 027965 137 LMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGVLIIGSGSATHNLR 188 (216)
Q Consensus 137 ~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d--~rv~iIaSG~lSH~l~ 188 (216)
++....++|||.|.+. .|++=++|.++++ .+|+|||.+.....+.
T Consensus 76 ~Lr~~~~iPVV~I~vs-------~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~ 122 (225)
T 2pju_A 76 YLKSRLSVPVILIKPS-------GYDVLQFLAKAGKLTSSIGVVTYQETIPALV 122 (225)
T ss_dssp HHHTTCSSCEEEECCC-------HHHHHHHHHHTTCTTSCEEEEEESSCCHHHH
T ss_pred HHHhhCCCCEEEecCC-------HHHHHHHHHHHHhhCCcEEEEeCchhhhHHH
Confidence 3445568999999973 3777788888864 7899999999876654
No 14
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=43.97 E-value=90 Score=24.26 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccC-CCCCeeEeeeCCCC--CHHHHHHHHHHhhc-----cc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH--TGTYHYNIGKALAP-----LK 171 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPVV~isi~~~~--~~~~~~~lG~aL~~-----~~ 171 (216)
-..+|+.|.+.|.+.|++ +.. ..++.- ..+ .+.-.|-+..++.. .+.....|=+.|.. +.
T Consensus 35 Te~~A~~ia~~l~~~g~~-v~v---~~l~~~--------~~~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~ 102 (191)
T 1bvy_F 35 AEGTARDLADIAMSKGFA-PQV---ATLDSH--------AGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVK 102 (191)
T ss_dssp HHHHHHHHHHHHHTTTCC-CEE---EEGGGS--------TTCCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTCCSSCCT
T ss_pred HHHHHHHHHHHHHhCCCc-eEE---eeHHHh--------hhhhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhccchhhC
Confidence 356899999999888884 432 112210 111 12233333333321 12233334444543 45
Q ss_pred cCCeEEEEecCCcc
Q 027965 172 EEGVLIIGSGSATH 185 (216)
Q Consensus 172 d~rv~iIaSG~lSH 185 (216)
+++++|+|+|+.+.
T Consensus 103 ~~~~avfG~Gds~y 116 (191)
T 1bvy_F 103 GVRYSVFGCGDKNW 116 (191)
T ss_dssp TCCEEEEEEECTTS
T ss_pred CCEEEEEEccCCch
Confidence 68999999998765
No 15
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=36.93 E-value=73 Score=29.69 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCC-eeEeeeCC--CCCHHHHHHHHHHhh----cccc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIP-VCQLSVQM--HHTGTYHYNIGKALA----PLKE 172 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iP-VV~isi~~--~~~~~~~~~lG~aL~----~~~d 172 (216)
..++|++|.+.+++.|++ +....--..|-.-...+ ++.+.. ||-++... +-.+.....|=+.|. .+.+
T Consensus 32 te~~A~~la~~l~~~g~~-~~v~~~~~~~~~~l~~~----~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~~~~l~~ 106 (618)
T 3qe2_A 32 AEEFANRLSKDAHRYGMR-GMSADPEEYDLADLSSL----PEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSG 106 (618)
T ss_dssp HHHHHHHHHHHGGGGTCC-EEEECGGGSCGGGGGGG----GGSTTCEEEEEEECBGGGBCCGGGHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCc-eEEechHHcCHHHhhhc----ccccCcEEEEEcCccCCCCCCHHHHHHHHHHhhccccccC
Confidence 456899999999888984 43211011222221111 111223 33332211 111223333334444 3567
Q ss_pred CCeEEEEecCCcc
Q 027965 173 EGVLIIGSGSATH 185 (216)
Q Consensus 173 ~rv~iIaSG~lSH 185 (216)
.+++|+|+||-+-
T Consensus 107 ~~~avfGlGd~~Y 119 (618)
T 3qe2_A 107 VKFAVFGLGNKTY 119 (618)
T ss_dssp CEEEEEEEECTTS
T ss_pred CEEEEEeCCCCCc
Confidence 8999999999875
No 16
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14
Probab=36.71 E-value=38 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=17.4
Q ss_pred cccchhhhhhccccCcccEEEEcCCCC
Q 027965 2 MRQRIPVIAAKSRLSVMDTFFISHGSP 28 (216)
Q Consensus 2 ~~~~~~~~~~~~~~~~~P~~fisHG~P 28 (216)
|.+.+|++...+. ...|++++.||..
T Consensus 8 ~~~~~~~~~p~~~-~~~~~vv~lHG~~ 33 (232)
T 1fj2_A 8 MSTPLPAIVPAAR-KATAAVIFLHGLG 33 (232)
T ss_dssp GGSCCCEEECCSS-CCSEEEEEECCSS
T ss_pred ccCCcccccCCCC-CCCceEEEEecCC
Confidence 3456676655543 4568999999884
No 17
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.45 E-value=1.3e+02 Score=21.48 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCCC-----CHHHHHHHHHHhhc--ccc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-----TGTYHYNIGKALAP--LKE 172 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~~-----~~~~~~~lG~aL~~--~~d 172 (216)
-..+|+.|.+.+.+.|++ +....-...|- .-+.. +.-.|-+..+... -+....+|=+.|.. +..
T Consensus 15 T~~~A~~ia~~l~~~g~~-v~~~~~~~~~~------~~l~~--~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~ 85 (148)
T 3f6r_A 15 TESIAQKLEELIAAGGHE-VTLLNAADASA------ENLAD--GYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAG 85 (148)
T ss_dssp HHHHHHHHHHHHHTTTCE-EEEEETTTBCC------TTTTT--TCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTT
T ss_pred HHHHHHHHHHHHHhCCCe-EEEEehhhCCH------hHhcc--cCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCC
Confidence 356899999999888873 43211001110 00100 2333443333211 12333333333432 456
Q ss_pred CCeEEEEecCCcc
Q 027965 173 EGVLIIGSGSATH 185 (216)
Q Consensus 173 ~rv~iIaSG~lSH 185 (216)
++++++|||+.+.
T Consensus 86 k~~~vfg~G~~~y 98 (148)
T 3f6r_A 86 RKVAAFASGDQEY 98 (148)
T ss_dssp CEEEEEEEECTTS
T ss_pred CEEEEEEeCCCCH
Confidence 8899999998754
No 18
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=33.43 E-value=49 Score=23.65 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcC
Q 027965 18 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQ 52 (216)
Q Consensus 18 ~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~ 52 (216)
..+++++|||. . ..+.+.++++.+.+++.
T Consensus 6 ~alllv~HGS~-----~-~~~~~~~~~l~~~l~~~ 34 (126)
T 3lyh_A 6 HQIILLAHGSS-----D-ARWCETFEKLAEPTVES 34 (126)
T ss_dssp EEEEEEECCCS-----C-HHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCC-----C-HHHHHHHHHHHHHHHhh
Confidence 35788999992 2 34556778887777543
No 19
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=33.41 E-value=7 Score=29.31 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=33.7
Q ss_pred cchhhhhhccccCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC
Q 027965 4 QRIPVIAAKSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA 62 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~ 62 (216)
+|||||..|+..+++|.+=- --..++.+....+++.-+++++....=++|.++-.
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK----~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vn 89 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDK----KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 89 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSC----CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CeEEEEEEecCCCCCccccC----CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEEC
Confidence 68999998888777663200 00012222245678888999986555567777654
No 20
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens}
Probab=32.33 E-value=31 Score=26.30 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=11.4
Q ss_pred cccCcccEEEEcCCC
Q 027965 13 SRLSVMDTFFISHGS 27 (216)
Q Consensus 13 ~~~~~~P~~fisHG~ 27 (216)
......|++++.||.
T Consensus 18 ~~~~~~p~vv~lHG~ 32 (239)
T 3u0v_A 18 PAGRHSASLIFLHGS 32 (239)
T ss_dssp CSSCCCEEEEEECCT
T ss_pred CCCCCCcEEEEEecC
Confidence 344567999999986
No 21
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=30.95 E-value=47 Score=27.21 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=22.8
Q ss_pred cEEEEcCCCCCCCCCCChhHHH-HHHHHHHHhhcCCCCEEE
Q 027965 19 DTFFISHGSPTLSIDESLPARG-FLQAWQAKVFSQRPNSIL 58 (216)
Q Consensus 19 P~~fisHG~P~~~~~~~~~~~~-~l~~l~~~l~~~~Pd~IV 58 (216)
..+.++||| ....+.+ .++.+.+++++.-|+.-|
T Consensus 4 aillv~hGS------r~~~~~~~~~~~~~~~v~~~~p~~~V 38 (264)
T 2xwp_A 4 ALLVVSFGT------SYHDTCEKNIVACERDLAASCPDRDL 38 (264)
T ss_dssp EEEEEECCC------SCHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEEEECCC------CCHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 568889999 2334555 788888877755555443
No 22
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=30.91 E-value=2.1e+02 Score=22.95 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCC-----------CCCcccccccCCCCCcHHHHH
Q 027965 40 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFY-----------GFPKQMYDLKYPAPGAPELAK 105 (216)
Q Consensus 40 ~~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~-----------Gfp~~~~~~~y~~~gd~~lA~ 105 (216)
.+.+.+.+.+.+.+||+||.++=+.-....++ ......-.+-|-. +-|.. |.-.. + .+
T Consensus 49 ~~~~~l~~~i~~~~Pd~vi~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp~~-~~t~L----p---v~ 120 (216)
T 4gxh_A 49 TSLEHLYAAVDKYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAA-YFSRL----P---IK 120 (216)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTCCSE-EECCS----C---HH
T ss_pred HHHHHHHHHHHhhCCCEEEEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccCCCchh-eecCC----C---HH
Confidence 34555666666789999999986544333221 1111111111211 12322 21111 2 56
Q ss_pred HHHHHHHhCCCCcccccCCCC---cccchhhhhhhhccC-CCCCeeEeeeC
Q 027965 106 RVKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 152 (216)
Q Consensus 106 ~l~~~l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~-~~iPVV~isi~ 152 (216)
++++.++++|++ +..+.+-| =+|=.+.-|+++... .+++..=|.+|
T Consensus 121 ~iv~~l~~~gip-a~vS~dAG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP 170 (216)
T 4gxh_A 121 TMVNALNTAGIP-ASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVP 170 (216)
T ss_dssp HHHHHHHHTTCC-EEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred HHHHHHHHCCCC-EEEeCCCcccHHHHHHHHHHHHHHHcCCCCeEEEEEcC
Confidence 788889999994 66544332 356566667766433 56777777775
No 23
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=30.25 E-value=14 Score=31.38 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCCCeEEEccCCCccCCCCCCCcccccccCCCCCcHHHHHHHHHHHHhCCC
Q 027965 45 WQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGI 116 (216)
Q Consensus 45 l~~~l~~~~Pd~IVviS~H~~~~~~~i~~~~~~~~~~Df~Gfp~~~~~~~y~~~gd~~lA~~l~~~l~~~g~ 116 (216)
+.+.+...++|+|+|.||+..-....+.+.... .+.+ ++-|+..+.+-|++|++.+++.|.
T Consensus 86 ~~ell~~~~iDaV~IatP~~~H~~~a~~al~aG----------khVl-~EKPla~~~~ea~~l~~~a~~~g~ 146 (393)
T 4fb5_A 86 WRALIADPEVDVVSVTTPNQFHAEMAIAALEAG----------KHVW-CEKPMAPAYADAERMLATAERSGK 146 (393)
T ss_dssp HHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTT----------CEEE-ECSCSCSSHHHHHHHHHHHHHSSS
T ss_pred HHHHhcCCCCcEEEECCChHHHHHHHHHHHhcC----------CeEE-EccCCcccHHHHHHhhhhHHhcCC
Confidence 345555678999999999653322111111110 1111 223555677778888888888776
No 24
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=29.10 E-value=12 Score=27.75 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=32.3
Q ss_pred cchhhhhhccccCcccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC
Q 027965 4 QRIPVIAAKSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA 62 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~ 62 (216)
.|||||..|...+.+|.+=- --..++.+....++..-+++++....=++|.++-+
T Consensus 29 ~riPVIvE~~~~~~~P~ldk----~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn 83 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDK----RKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVN 83 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSC----CEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBT
T ss_pred CceEEEEEeCCCCCCCcccc----ceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEEC
Confidence 57888888876666552100 00111222245678888999886544477777754
No 25
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.25 E-value=2.2e+02 Score=22.38 Aligned_cols=77 Identities=4% Similarity=-0.109 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---C-----C-HHHHHHHHHHhhcc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H-----T-GTYHYNIGKALAPL 170 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~-----~-~~~~~~lG~aL~~~ 170 (216)
+.+....+.+.+.+.++|-+.... .+. ..++.-...+..+|||.+.-... . | ....+..++.|.+.
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiIi~~---~~~--~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 123 (291)
T 3egc_A 49 DIVREREAVGQFFERRVDGLILAP---SEG--EHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIAR 123 (291)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECC---CSS--CCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC---CCC--ChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHc
Confidence 444455566677777776222211 111 11222233456899988765322 1 1 34456666777766
Q ss_pred ccCCeEEEEec
Q 027965 171 KEEGVLIIGSG 181 (216)
Q Consensus 171 ~d~rv~iIaSG 181 (216)
..++|++|+.-
T Consensus 124 G~~~i~~i~~~ 134 (291)
T 3egc_A 124 GHTRIGAIVGS 134 (291)
T ss_dssp TCCSEEEECSC
T ss_pred CCCEEEEEeCC
Confidence 66899988643
No 26
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.24 E-value=2.1e+02 Score=22.28 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=26.4
Q ss_pred cCCCCCeeEeeeCCC--------CC-HHHHHHHHHHhhccccCCeEEEEecC
Q 027965 140 PEADIPVCQLSVQMH--------HT-GTYHYNIGKALAPLKEEGVLIIGSGS 182 (216)
Q Consensus 140 p~~~iPVV~isi~~~--------~~-~~~~~~lG~aL~~~~d~rv~iIaSG~ 182 (216)
.+..+|||-+.-... .| ....+..++.|.+...++|++|+...
T Consensus 82 ~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 82 LHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp HTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred HHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 345777777654211 12 34456677777776668899987643
No 27
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=27.51 E-value=2.4e+02 Score=22.70 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCC-----------CCcccccccCCCCCcHHHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYG-----------FPKQMYDLKYPAPGAPELAKR 106 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~G-----------fp~~~~~~~y~~~gd~~lA~~ 106 (216)
..+.+.+.+.+.+||+||.++-+.-....++ +.....-.+-|-.| -|.. |.- .-+ .++
T Consensus 50 ~~~~l~~~i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp~a-~~s----tLp---v~~ 121 (223)
T 3ro0_A 50 SLAVLREAMKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAA-YWT----GLP---IKR 121 (223)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSCSE-EEC----CSC---HHH
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCCce-eec----CCC---HHH
Confidence 4455555566779999999997765443322 22111111222222 1221 211 112 467
Q ss_pred HHHHHHhCCCCcccccCCCC---cccchhhhhhhhccC-CCCCeeEeeeC
Q 027965 107 VKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 152 (216)
Q Consensus 107 l~~~l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~-~~iPVV~isi~ 152 (216)
+++.+++.|++ +..+.+-| =+|=.+.-|+++... .+++..=|.+|
T Consensus 122 ~v~~l~~~gip-a~vS~dAG~yvCN~iyY~sL~~~~~~~~~~~~gFIHVP 170 (223)
T 3ro0_A 122 IVEEIKKEGIP-AAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIP 170 (223)
T ss_dssp HHHHHHHTTCC-BCCBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred HHHHHHHCCCC-EEEeCCCCcccchHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 88888999994 66554433 366666677766432 34555555554
No 28
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=26.79 E-value=2.3e+02 Score=22.14 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccc---hhhhhhhhccCCCCCeeEeeeCCC--------CC-HHHHHHHHHHh
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHG---AWVPLMLMYPEADIPVCQLSVQMH--------HT-GTYHYNIGKAL 167 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG---~~vPL~~l~p~~~iPVV~isi~~~--------~~-~~~~~~lG~aL 167 (216)
+.+....+.+.+.+.++|-+... +.|.. ...++.-...+..+|||-+.-... .| ....+..++.|
T Consensus 56 ~~~~~~~~~~~l~~~~vdgiIi~---~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L 132 (298)
T 3tb6_A 56 NPDNERRGLENLLSQHIDGLIVE---PTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHL 132 (298)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEC---CSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCEEEEe---cccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHH
Confidence 44445556666666777522211 12221 111222222345788877764211 11 34456666777
Q ss_pred hccccCCeEEEEe
Q 027965 168 APLKEEGVLIIGS 180 (216)
Q Consensus 168 ~~~~d~rv~iIaS 180 (216)
.+...++|++|+.
T Consensus 133 ~~~G~~~i~~i~~ 145 (298)
T 3tb6_A 133 LSLGHTHMMGIFK 145 (298)
T ss_dssp HHTTCCSEEEEEE
T ss_pred HHCCCCcEEEEcC
Confidence 7766689998875
No 29
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=26.30 E-value=2.4e+02 Score=22.32 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCC-----------CCcccccccCCCCCcHHHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYG-----------FPKQMYDLKYPAPGAPELAKR 106 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~G-----------fp~~~~~~~y~~~gd~~lA~~ 106 (216)
+.+.+.+.+++.+||+||.++=|.-....++ ......-.+-|-.| -|+. |.-.. + .++
T Consensus 48 ~~~~l~~~~~~~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~-~~ttl----p---i~~ 119 (208)
T 1x10_A 48 AKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTA-YFSTL----P---IKK 119 (208)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSCSE-EECCS----C---HHH
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeCCCCce-eEcCC----C---HHH
Confidence 3445555556679999999997654443222 22111111122222 1222 22222 2 466
Q ss_pred HHHHHHhCCCCcccccCCCC---cccchhhhhhhhccC--CCCCeeEeeeC
Q 027965 107 VKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE--ADIPVCQLSVQ 152 (216)
Q Consensus 107 l~~~l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~--~~iPVV~isi~ 152 (216)
+++.++++|++ +..+.+-| =+|=.+.-|++.... .+ +..=|.++
T Consensus 120 iv~~l~~~gi~-~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~-~~gFIHVP 168 (208)
T 1x10_A 120 IMKKLHERGIP-AYISNSAGLYLSNYVMYLSLHHSATKGYPK-MSGFIHVP 168 (208)
T ss_dssp HHHHHHHTTCC-EEEESCCCSSHHHHHHHHHHHHHHHHSCCS-EEEEEEEC
T ss_pred HHHHHHhCCCC-EEEecCCCcchhhHHHHHHHHHHHhccCCC-ceEEEEcC
Confidence 78888889994 66543333 466667777776432 23 66666664
No 30
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.75 E-value=38 Score=27.67 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHHHHhC
Q 027965 96 PAPGAPELAKRVKDLLKAS 114 (216)
Q Consensus 96 ~~~gd~~lA~~l~~~l~~~ 114 (216)
++-.++++.+.+++.+++.
T Consensus 120 pl~~~p~~i~~la~~i~~~ 138 (269)
T 2xvy_A 120 PLIGTTADAEAVAEALVAS 138 (269)
T ss_dssp CSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4567888888888877654
No 31
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.60 E-value=12 Score=27.79 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=31.9
Q ss_pred cchhhhhhccccCcccEE----EEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEe
Q 027965 4 QRIPVIAAKSRLSVMDTF----FISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVIS 61 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~P~~----fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS 61 (216)
+|||||..|...+.+|.+ |+ ++.+....+++.-+++++....=++|.++-
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~Kfl--------Vp~~~tv~qf~~~iRkrl~l~~~~alFl~V 83 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFL--------VPSDLTVGQFVSVLRKRVQLEAESALFVYT 83 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEE--------EETTCBHHHHHHHHHHHHTCCTTSCCEEEE
T ss_pred CeEEEEEEecCCCCCCccCcceEE--------cCCCCCHHHHHHHHHHHhCCCccceEEEEE
Confidence 588999888877776642 11 122223567888899988644445666654
No 32
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=24.80 E-value=2e+02 Score=23.34 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EEccCCCccCCCCC-----------CCcccccccCCCCCcHHHHHH
Q 027965 41 FLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYG-----------FPKQMYDLKYPAPGAPELAKR 106 (216)
Q Consensus 41 ~l~~l~~~l~~~~Pd~IVviS~H~~~~~~~i---~~~~~~~~~~Df~G-----------fp~~~~~~~y~~~gd~~lA~~ 106 (216)
..+.+.+.+.+.+||+||.++-+.-....++ +.....-.+-|-.| -|.. | ...-+ .++
T Consensus 71 ~~~~l~~~i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~a-~----~stLp---vk~ 142 (228)
T 4hps_A 71 SLEHLYAAVDKYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAA-Y----FSRLP---IKT 142 (228)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCCSE-E----ECCSC---HHH
T ss_pred HHHHHHHHHHhhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCCce-e----eeCCC---HHH
Confidence 4445555566779999999997765543221 11110011122222 1222 2 11223 366
Q ss_pred HHHHHHhCCCCcccccCCCC---cccchhhhhhhhcc-CCCCCeeEeeeC
Q 027965 107 VKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYP-EADIPVCQLSVQ 152 (216)
Q Consensus 107 l~~~l~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p-~~~iPVV~isi~ 152 (216)
+++.++++|++ +..+.+-| =+|=.+.-|+++.. ...++..=|.+|
T Consensus 143 ~v~~l~~~Gip-a~vS~dAGtYvCN~iyY~sL~~~~~~~~~~~~gFIHVP 191 (228)
T 4hps_A 143 MVNALNTAGIP-ASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVP 191 (228)
T ss_dssp HHHHHHHTTCC-EEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred HHHHHHHcCCc-EEEeCCCCcchhHHHHHHHHHHHHhcCCCceEEEEEcC
Confidence 78888899994 66544333 36666667776642 234555555554
No 33
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=24.62 E-value=62 Score=27.72 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWDT 66 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~~ 66 (216)
.+..+++.+++++.++|+||++| |+-.
T Consensus 193 ~~~~~~~v~~Lk~~g~D~II~l~-H~G~ 219 (341)
T 3gve_A 193 VESANETIPKMKAEGADVIIALA-HTGI 219 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEE-CCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-ccCc
Confidence 35566666777777799999998 8743
No 34
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=24.22 E-value=64 Score=27.68 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027965 39 RGFLQAWQAKVFSQRPNSILVISAHWD 65 (216)
Q Consensus 39 ~~~l~~l~~~l~~~~Pd~IVviS~H~~ 65 (216)
.+..+++.+++++.++|+||++| |+-
T Consensus 187 ~e~~~~~v~~lr~~g~D~II~l~-H~G 212 (339)
T 3jyf_A 187 TETARKYIPEMRAKGADVVVVVA-HSG 212 (339)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEE-CCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-ccC
Confidence 45666777777777899999998 874
No 35
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.41 E-value=1e+02 Score=24.61 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC------------C-CHHHHHHHHHH
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH------------H-TGTYHYNIGKA 166 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~------------~-~~~~~~~lG~a 166 (216)
+++-.....+.+.+.++|-+.. .+.|...+.+..-...+..+|||.+..... . +....+..++.
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiii---~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 122 (297)
T 3rot_A 46 DVPKQVQFIESALATYPSGIAT---TIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEK 122 (297)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEE---CCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---eCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHH
Confidence 3333444555555566652211 123333323322222234677776654211 1 13445677777
Q ss_pred hhccc--cCCeEEEEe
Q 027965 167 LAPLK--EEGVLIIGS 180 (216)
Q Consensus 167 L~~~~--d~rv~iIaS 180 (216)
|.+.. .++|++|+.
T Consensus 123 l~~~g~~~~~i~~i~g 138 (297)
T 3rot_A 123 ALELTPSAKRALVLNP 138 (297)
T ss_dssp HHHHCTTCCEEEEEES
T ss_pred HHHhcCCCceEEEEeC
Confidence 77766 678888863
No 36
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=22.16 E-value=2.8e+02 Score=21.62 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---------CC-HHHHHHHHHHhhc
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---------HT-GTYHYNIGKALAP 169 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---------~~-~~~~~~lG~aL~~ 169 (216)
+++--..+.+.+.+.++|-+.. .+.+.....++.-...+..+|||-+.-... .+ ....+..++.|.+
T Consensus 54 ~~~~~~~~i~~l~~~~vdgiii---~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~ 130 (304)
T 3gbv_A 54 DYNSFVATSQAVIEEQPDGVMF---APTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLML 130 (304)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEE---CCSSGGGTHHHHHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEE---CCCChHHHHHHHHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHH
Confidence 3333444555555666652211 123333222322222334677777654211 12 3445667777777
Q ss_pred ccc--CCeEEEEe
Q 027965 170 LKE--EGVLIIGS 180 (216)
Q Consensus 170 ~~d--~rv~iIaS 180 (216)
... ++|++|+.
T Consensus 131 ~g~~~~~i~~i~~ 143 (304)
T 3gbv_A 131 LAVNDREIVIFRK 143 (304)
T ss_dssp HSTTCSEEEEEEE
T ss_pred HhCCCCeEEEEEe
Confidence 654 88999974
No 37
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=22.15 E-value=90 Score=19.32 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.7
Q ss_pred CeeEeeeCCCCCHHHHHHHHHHhhcc
Q 027965 145 PVCQLSVQMHHTGTYHYNIGKALAPL 170 (216)
Q Consensus 145 PVV~isi~~~~~~~~~~~lG~aL~~~ 170 (216)
|+|.|.+ ...+.++--+|-++|.++
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~ 25 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSV 25 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHH
Confidence 8999999 889999888888887775
No 38
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.74 E-value=3e+02 Score=21.77 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=43.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---C-----C-HHHHHHHHHHhh
Q 027965 98 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H-----T-GTYHYNIGKALA 168 (216)
Q Consensus 98 ~gd~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~-----~-~~~~~~lG~aL~ 168 (216)
..+.+.-..+.+.+.+.++|-+.... .+... +..-...+..+|||.+.-... . | ....+..++.|.
T Consensus 66 ~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~--~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 140 (305)
T 3huu_A 66 ENSGDLYHEVKTMIQSKSVDGFILLY---SLKDD--PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLY 140 (305)
T ss_dssp SSHHHHHHHHHHHHHTTCCSEEEESS---CBTTC--HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCCEEEEeC---CcCCc--HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHH
Confidence 34556566677777777776222211 11111 222222346789888765321 1 2 344566666777
Q ss_pred ccccCCeEEEEe
Q 027965 169 PLKEEGVLIIGS 180 (216)
Q Consensus 169 ~~~d~rv~iIaS 180 (216)
+...++|++|+.
T Consensus 141 ~~G~~~I~~i~~ 152 (305)
T 3huu_A 141 HLGHRHILFLQE 152 (305)
T ss_dssp HTTCCSEEEEEE
T ss_pred HCCCCeEEEEcC
Confidence 666689999965
No 39
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=21.65 E-value=2.3e+02 Score=20.33 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCcccc-cCCCCcc-cchhhhhhhhccCCCCCeeEeeeCCCCCHHHHHHHHHHhhccccCCeEEE
Q 027965 102 ELAKRVKDLLKASGIKHVNE-DRKRGLD-HGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLII 178 (216)
Q Consensus 102 ~lA~~l~~~l~~~g~d~~~~-~~~~~lD-HG~~vPL~~l~p~~~iPVV~isi~~~~~~~~~~~lG~aL~~~~d~rv~iI 178 (216)
.|.+.|++.+++.|+.-++. ..-.|.. ||.+---.++.-..|.||+-..+ .++++..+|=..|.++.+.+++.+
T Consensus 30 pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~V---d~~eki~~~l~~l~~~v~~Glvt~ 105 (114)
T 1o51_A 30 PLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIV---DEEERINLFLKEIDNIDFDGLVFT 105 (114)
T ss_dssp EHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEE---ECHHHHHHHHHHHHTCCCCSEEEE
T ss_pred EHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEE---cCHHHHHHHHHHHHHHhCCCEEEE
Confidence 37888999999998831221 2223333 33344444454456899988887 567777777788888766655443
No 40
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=21.51 E-value=22 Score=26.70 Aligned_cols=55 Identities=7% Similarity=0.213 Sum_probs=32.0
Q ss_pred cchhhhhhccccCc-ccEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEE-EeC
Q 027965 4 QRIPVIAAKSRLSV-MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILV-ISA 62 (216)
Q Consensus 4 ~~~~~~~~~~~~~~-~P~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVv-iS~ 62 (216)
.|||||..|...++ +|.+== --+.++.+....++..-+++++....=++|.+ +-.
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk----~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn 90 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDK----TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNG 90 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSC----CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETT
T ss_pred CceEEEEEEcCCCCcCccccc----cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEEC
Confidence 47888877776655 553200 00012222245678888999987655678877 543
No 41
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=20.45 E-value=2.8e+02 Score=22.20 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHhCCCCccccc--CCCCcccchhhhhhhhccCCCCCeeEeeeCC--CCCHHHHHHHHHHhhc----cc
Q 027965 100 APELAKRVKDLLKASGIKHVNED--RKRGLDHGAWVPLMLMYPEADIPVCQLSVQM--HHTGTYHYNIGKALAP----LK 171 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~--~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~--~~~~~~~~~lG~aL~~----~~ 171 (216)
..++|+.|.+.+ +.|++ +... .+..++ -+ ++ .-.+|-++... +..|.....|=+.|.. +.
T Consensus 54 te~~A~~La~~l-~~g~~-v~v~~l~~~~~~--------~l-~~-~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~~~l~ 121 (219)
T 3hr4_A 54 SEALAWDLGALF-SCAFN-PKVVCMDKYRLS--------CL-EE-ERLLLVVTSTFGNGDCPGNGEKLKKSLFMLKELNN 121 (219)
T ss_dssp HHHHHHHHHHHH-TTTSE-EEEEEGGGCCGG--------GG-GT-CSEEEEEEECBTTTBCCGGGHHHHHHHHHCCCCSS
T ss_pred HHHHHHHHHHHH-HcCCC-eEEEEcccCCHh--------Hh-cc-CCeEEEEEeccCCCcCCHHHHHHHHHHHhcchhhc
Confidence 445788888877 46773 3321 111111 11 12 22344333311 1123333334344443 34
Q ss_pred cCCeEEEEecCCcc
Q 027965 172 EEGVLIIGSGSATH 185 (216)
Q Consensus 172 d~rv~iIaSG~lSH 185 (216)
..+++|+|+||.+-
T Consensus 122 ~~~~aVfGlGdssY 135 (219)
T 3hr4_A 122 KFRYAVFGLGSSMY 135 (219)
T ss_dssp CCEEEEEEEECTTS
T ss_pred CCEEEEEeCCCcch
Confidence 67899999999873
No 42
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=20.35 E-value=2.8e+02 Score=24.16 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCCcccc---cCCCCcccchhhhhhhhccCCCCCeeEeeeCC---CCCHHHHHHHHHHhhc-cccC
Q 027965 101 PELAKRVKDLLKASGIKHVNE---DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGTYHYNIGKALAP-LKEE 173 (216)
Q Consensus 101 ~~lA~~l~~~l~~~g~d~~~~---~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~---~~~~~~~~~lG~aL~~-~~d~ 173 (216)
..+|+.|++.+.+.|++ +.. ...-.-|.+-. +..-.+..-|-+..++ .+-+.-.+-|...... ..++
T Consensus 280 e~mA~~ia~gl~~~Gv~-~~~~~~~d~~~~~~s~i-----~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K 353 (410)
T 4dik_A 280 ENVMKKAIDSLKEKGFT-PVVYKFSDEERPAISEI-----LKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEK 353 (410)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEEEECSSCCCCHHHH-----HHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcCCc-eEEEEeccCCCCCHHHH-----HHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCC
Confidence 45899999999999984 321 11111222211 1111455555555543 2334433445444433 2468
Q ss_pred CeEEEEecCCc
Q 027965 174 GVLIIGSGSAT 184 (216)
Q Consensus 174 rv~iIaSG~lS 184 (216)
.++++||+|.|
T Consensus 354 ~~~~FGSyGWs 364 (410)
T 4dik_A 354 PVLVFGVHGWA 364 (410)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 89999999876
No 43
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.30 E-value=1.7e+02 Score=20.50 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhccCCCCCeeEeeeCCC---CCHH-HHHHHHHHhhc-cccCC
Q 027965 100 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGT-YHYNIGKALAP-LKEEG 174 (216)
Q Consensus 100 d~~lA~~l~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~isi~~~---~~~~-~~~~lG~aL~~-~~d~r 174 (216)
-..+|+.|.+.+.+.|++ +....-...|- .-+ .+...|-+..+.. ..+. ....|=+.|.. +.+++
T Consensus 12 T~~iA~~ia~~l~~~g~~-v~~~~~~~~~~------~~l---~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~ 81 (138)
T 5nul_A 12 TEKMAELIAKGIIESGKD-VNTINVSDVNI------DEL---LNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKK 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCC-CEEEEGGGCCH------HHH---TTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCE
T ss_pred HHHHHHHHHHHHHHCCCe-EEEEEhhhCCH------HHH---hhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCE
Confidence 456889999999988874 43210000110 011 2334455444332 1121 22222233433 66789
Q ss_pred eEEEEecCCc
Q 027965 175 VLIIGSGSAT 184 (216)
Q Consensus 175 v~iIaSG~lS 184 (216)
++++||++.+
T Consensus 82 ~~~f~t~g~~ 91 (138)
T 5nul_A 82 VALFGSYGWG 91 (138)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEecCCC
Confidence 9999998765
Done!