Query 027966
Match_columns 216
No_of_seqs 112 out of 428
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 98.1 1.3E-05 4.4E-10 65.2 9.9 132 19-167 40-177 (181)
2 2nr9_A Protein GLPG homolog; i 96.6 0.0074 2.5E-07 49.4 8.5 133 20-168 46-183 (196)
3 1w8x_P Protein P16, protein S, 13.1 1.4E+02 0.0049 21.2 2.8 24 101-124 9-32 (117)
4 2l34_A TYRO protein tyrosine k 8.9 2E+02 0.0069 16.5 2.0 16 102-117 18-33 (33)
5 1emz_A Envelope glycoprotein E 8.3 1.6E+02 0.0055 16.2 1.3 14 156-169 4-17 (26)
6 1wyo_A Protein EB3, microtubul 7.3 3E+02 0.01 21.4 3.0 16 179-194 111-126 (159)
7 2jpk_A Bacteriocin lactococcin 6.0 2.9E+02 0.01 15.9 1.7 17 132-148 2-18 (35)
8 1k3r_A Conserved protein MT000 5.5 3.1E+02 0.01 23.2 2.3 17 178-194 62-79 (268)
9 3tgu_G UQCRQ, mitochondrial ub 5.4 4.4E+02 0.015 18.1 2.7 26 43-68 52-77 (81)
10 1pp9_G Ubiquinol-cytochrome C 4.6 5.4E+02 0.019 17.6 2.7 27 43-69 52-78 (81)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=98.14 E-value=1.3e-05 Score=65.23 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=80.1
Q ss_pred eecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHH
Q 027966 19 YIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAK 98 (216)
Q Consensus 19 ~~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~ 98 (216)
..+.|+|| ++|+.|..++. .++++|++.++..++.+|+.. .+.+|+.+.+.+++.-.+.+...+-.+.+ +
T Consensus 40 ~~~~~~wr-l~T~~f~H~~~-~Hl~~Nm~~l~~~g~~~E~~~---G~~~fl~~yl~~~i~~~l~~~~~~~~~~v-G---- 109 (181)
T 2xov_A 40 TLKFEFWR-YFTHALMHFSL-MHILFNLLWWWYLGGAVEKRL---GSGKLIVITLISALLSGYVQQKFSGPWFG-G---- 109 (181)
T ss_dssp GGTTCTTH-HHHGGGCCCSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCC-C----
T ss_pred ccCCCCHH-HHHHHHHccCH-HHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHhcCCCce-e----
Confidence 45689999 99999998877 999999999999999999875 46788776665554333332221100000 0
Q ss_pred HhHHHHHHHHHHHH--HhhhcCCCceeEEEEeecccccchHHHHHHHHHHh----cchhHHHHHHhhHHHHHHHh
Q 027966 99 IIFLSNSLTLMMVY--VWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFV----GASAWVDLLGMIAGHAYYFL 167 (216)
Q Consensus 99 ~~fL~~~L~~~liY--iWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~----~~s~~~~liGi~~GHly~fL 167 (216)
.+.+....+.+ +.+|++|+.++. ++.+...+-.+.++.++.. +-+...++-|+++|.++-.+
T Consensus 110 ---aSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~ 177 (181)
T 2xov_A 110 ---LSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177 (181)
T ss_dssp ---SHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 01111112222 246788887653 2222222212223344332 23678899999999998765
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=96.64 E-value=0.0074 Score=49.36 Aligned_cols=133 Identities=11% Similarity=0.180 Sum_probs=76.4
Q ss_pred ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 027966 20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKI 99 (216)
Q Consensus 20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~~ 99 (216)
...|+|| ++|+-|..++. .++++|++.++..++.+|+.. .+..|+...+.+++.-.+.+....-.+.+ + ..+.
T Consensus 46 ~~~~~wr-l~T~~flH~~~-~Hl~~Nm~~l~~~G~~lE~~~---G~~~~l~~yl~~~~~~~l~~~~~~~~~~v-G-aSGa 118 (196)
T 2nr9_A 46 QDSEVWR-YISHTLVHLSN-LHILFNLSWFFIFGGMIERTF---GSVKLLMLYVVASAITGYVQNYVSGPAFF-G-LSGV 118 (196)
T ss_dssp GGGCTTH-HHHGGGCCSSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCC-C-SHHH
T ss_pred ccCCcHH-HHHHHHHccCH-HHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHHHHHHHHHHhcCCCee-e-HHHH
Confidence 5689999 99999888765 999999999999999999875 45677665555443322222221100000 0 0011
Q ss_pred hHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhc-----chhHHHHHHhhHHHHHHHhh
Q 027966 100 IFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-----ASAWVDLLGMIAGHAYYFLE 168 (216)
Q Consensus 100 ~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~-----~s~~~~liGi~~GHly~fL~ 168 (216)
.. ..+...++ ..+++|+. + .++.+...+-.+.++++++.. -+...++-|.++|-++-++.
T Consensus 119 -i~-gl~g~~~~--~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 119 -VY-AVLGYVFI--RDKLNHHL-F----DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp -HH-HHHHHHHH--HHHSSTTS-C----CCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHH--HHHhcchh-h----cchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 11111122 24555654 1 133444333333344555432 26788999999998887654
No 3
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=13.06 E-value=1.4e+02 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.728 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCceeE
Q 027966 101 FLSNSLTLMMVYVWSKQNPFIHMS 124 (216)
Q Consensus 101 fL~~~L~~~liYiWsr~np~~~V~ 124 (216)
..|..+...+++.|-|..|..+|.
T Consensus 9 wvggglvliliwlwfrnrpaaqva 32 (117)
T 1w8x_P 9 WVGGGLVLILIWLWFRNRPAAQVA 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCSS
T ss_pred EecCchhhHHHHHHHccChHHHHh
Confidence 467788889999999999987763
No 4
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=8.87 E-value=2e+02 Score=16.47 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 027966 102 LSNSLTLMMVYVWSKQ 117 (216)
Q Consensus 102 L~~~L~~~liYiWsr~ 117 (216)
.+..+....+|.|+|.
T Consensus 18 ~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 18 VLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhheecC
Confidence 4456777889999884
No 5
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.33 E-value=1.6e+02 Score=16.17 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=10.8
Q ss_pred HHhhHHHHHHHhhh
Q 027966 156 LGMIAGHAYYFLED 169 (216)
Q Consensus 156 iGi~~GHly~fL~~ 169 (216)
.|++.||.||...-
T Consensus 4 wGvl~glayfsm~g 17 (26)
T 1emz_A 4 WGVLAGIAYFSMVG 17 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhh
Confidence 48889999987643
No 6
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.27 E-value=3e+02 Score=21.41 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=10.5
Q ss_pred CcCChHHHHHhhcccc
Q 027966 179 PLKTPSFIKALFADEA 194 (216)
Q Consensus 179 ~l~TP~fl~~l~~~~~ 194 (216)
=++-=+|++++++...
T Consensus 111 NlEFlqWfk~f~d~n~ 126 (159)
T 1wyo_A 111 NFEFIQWFKKFFDANY 126 (159)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3555678888886533
No 7
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=6.03 E-value=2.9e+02 Score=15.94 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=13.5
Q ss_pred cccchHHHHHHHHHHhc
Q 027966 132 TAAYLPWVLLGFSVFVG 148 (216)
Q Consensus 132 ~a~ylP~~~l~~~~l~~ 148 (216)
|..+|||+--+-+++.|
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 46789999888888764
No 8
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=5.55 E-value=3.1e+02 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=9.8
Q ss_pred CCcCChHHHHH-hhcccc
Q 027966 178 RPLKTPSFIKA-LFADEA 194 (216)
Q Consensus 178 ~~l~TP~fl~~-l~~~~~ 194 (216)
+++.||+.|+| +|+..+
T Consensus 62 ~YleTPpYLRK~lFp~~~ 79 (268)
T 1k3r_A 62 TYMDTPQYLRRKVFPIMR 79 (268)
T ss_dssp HHHHSCHHHHHHHCCCCG
T ss_pred HHhcCChhHhHhhCCCCc
Confidence 34567777766 455433
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=5.42 E-value=4.4e+02 Score=18.13 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCchhH
Q 027966 43 LFHMFFLARYCKLLEENSFRGRTADF 68 (216)
Q Consensus 43 l~~l~fl~~yss~LE~~~f~~~~aDy 68 (216)
+.-.|.++..+..-.+..-+-+|+||
T Consensus 52 fi~~Y~i~~Wa~~~ne~l~rKnpady 77 (81)
T 3tgu_G 52 FLGAYLLYSWGTQEFERLKRKNPADY 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 45678888988887777677789998
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=4.63 E-value=5.4e+02 Score=17.58 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCchhHH
Q 027966 43 LFHMFFLARYCKLLEENSFRGRTADFL 69 (216)
Q Consensus 43 l~~l~fl~~yss~LE~~~f~~~~aDyl 69 (216)
+.-.|.++..+..-.+..-+-+++||.
T Consensus 52 fv~~Y~i~~Wa~~~~e~~~rKnp~d~~ 78 (81)
T 1pp9_G 52 FVAFYLVYTWGTQEFEKSKRKNPAAYE 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHhc
Confidence 456788899988877766677889984
Done!