Query 027968
Match_columns 216
No_of_seqs 159 out of 1416
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 2.3E-56 4.9E-61 382.5 14.6 171 45-215 7-179 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.8E-54 3.8E-59 342.9 18.2 170 40-216 33-204 (217)
3 PTZ00060 cyclophilin; Provisio 100.0 6E-49 1.3E-53 317.7 20.4 169 46-215 15-183 (183)
4 cd01926 cyclophilin_ABH_like c 100.0 9.3E-49 2E-53 311.7 19.7 164 47-212 1-164 (164)
5 KOG0879 U-snRNP-associated cyc 100.0 9.6E-49 2.1E-53 293.3 13.2 169 44-214 8-177 (177)
6 PTZ00221 cyclophilin; Provisio 100.0 4.6E-47 1E-51 317.2 20.1 167 45-215 51-220 (249)
7 PLN03149 peptidyl-prolyl isome 100.0 3E-47 6.5E-52 308.3 18.5 167 46-214 18-186 (186)
8 KOG0881 Cyclophilin type pepti 100.0 3.1E-46 6.8E-51 276.7 8.6 152 47-214 10-163 (164)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 1.1E-44 2.4E-49 283.7 15.2 145 57-214 5-157 (158)
10 cd01923 cyclophilin_RING cyclo 100.0 3.7E-44 8.1E-49 283.9 18.2 151 51-215 2-154 (159)
11 cd01927 cyclophilin_WD40 cyclo 100.0 7.9E-44 1.7E-48 278.9 16.7 142 58-210 4-147 (148)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 7.1E-44 1.5E-48 278.5 16.3 142 58-210 4-146 (146)
13 cd01928 Cyclophilin_PPIL3_like 100.0 1.3E-43 2.9E-48 279.0 17.4 144 58-212 7-152 (153)
14 KOG0111 Cyclophilin-type pepti 100.0 2.5E-44 5.5E-49 289.7 10.3 165 44-215 134-298 (298)
15 PRK10903 peptidyl-prolyl cis-t 100.0 1.3E-42 2.8E-47 282.0 20.3 144 59-215 36-190 (190)
16 cd01921 cyclophilin_RRM cyclop 100.0 6.4E-43 1.4E-47 278.7 17.2 147 58-215 4-160 (166)
17 KOG0883 Cyclophilin type, U bo 100.0 2.8E-42 6.1E-47 296.6 11.4 159 42-214 271-431 (518)
18 cd01925 cyclophilin_CeCYP16-li 100.0 6.4E-41 1.4E-45 268.3 18.1 146 59-215 13-161 (171)
19 PRK10791 peptidyl-prolyl cis-t 100.0 5.9E-40 1.3E-44 260.8 17.6 144 58-214 6-163 (164)
20 cd01920 cyclophilin_EcCYP_like 100.0 1.9E-39 4.1E-44 255.9 16.2 140 58-210 4-154 (155)
21 PF00160 Pro_isomerase: Cyclop 100.0 5.3E-39 1.1E-43 252.9 16.6 151 50-213 1-155 (155)
22 KOG0882 Cyclophilin-related pe 100.0 4.7E-40 1E-44 287.6 11.0 145 57-212 410-556 (558)
23 KOG0884 Similar to cyclophilin 100.0 4.9E-39 1.1E-43 237.1 11.3 142 59-211 8-152 (161)
24 cd00317 cyclophilin cyclophili 100.0 7.4E-38 1.6E-42 244.2 16.0 140 59-210 5-146 (146)
25 KOG0865 Cyclophilin type pepti 100.0 4.2E-38 9.1E-43 248.4 9.5 163 45-214 2-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 5.4E-37 1.2E-41 246.3 15.3 128 57-194 3-164 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.8E-35 3.9E-40 253.5 11.6 157 43-215 9-168 (439)
28 KOG0415 Predicted peptidyl pro 100.0 6.5E-34 1.4E-38 242.6 13.5 147 58-215 7-163 (479)
29 KOG0882 Cyclophilin-related pe 97.8 4.3E-05 9.3E-10 68.6 5.4 140 62-212 113-260 (558)
30 TIGR03268 methan_mark_3 putati 96.7 0.007 1.5E-07 55.4 8.2 99 62-193 202-302 (503)
31 PRK00969 hypothetical protein; 96.7 0.0065 1.4E-07 55.7 7.9 99 62-193 205-305 (508)
32 TIGR03268 methan_mark_3 putati 96.4 0.031 6.6E-07 51.3 10.0 113 62-194 376-495 (503)
33 COG4070 Predicted peptidyl-pro 96.2 0.018 4E-07 51.3 7.3 101 60-193 202-304 (512)
34 PRK00969 hypothetical protein; 95.8 0.079 1.7E-06 48.8 9.8 112 62-194 379-497 (508)
35 PF12903 DUF3830: Protein of u 95.0 0.17 3.6E-06 39.5 7.9 105 62-193 9-129 (147)
36 COG4070 Predicted peptidyl-pro 93.5 0.38 8.3E-06 43.2 7.7 22 62-83 377-398 (512)
37 PF04126 Cyclophil_like: Cyclo 78.4 12 0.00025 28.0 6.8 45 144-193 61-112 (120)
38 COG2164 Uncharacterized conser 58.5 6.6 0.00014 28.8 1.6 32 162-193 79-116 (126)
39 PF05913 DUF871: Bacterial pro 47.0 10 0.00022 33.9 1.3 50 143-193 298-348 (357)
40 PRK02710 plastocyanin; Provisi 42.2 25 0.00054 26.0 2.6 20 1-20 1-20 (119)
41 PF08415 NRPS: Nonribosomal pe 37.0 35 0.00076 21.8 2.3 27 183-210 4-30 (58)
42 COG4704 Uncharacterized protei 36.7 82 0.0018 24.3 4.6 30 57-86 40-72 (151)
43 COG5510 Predicted small secret 35.1 49 0.0011 20.3 2.6 6 1-6 1-6 (44)
44 PF04573 SPC22: Signal peptida 29.4 83 0.0018 25.2 3.8 27 56-82 59-85 (175)
45 PF15284 PAGK: Phage-encoded v 27.0 89 0.0019 20.6 2.9 13 3-15 2-14 (61)
46 COG0219 CspR Predicted rRNA me 22.6 1.4E+02 0.003 23.6 3.8 33 63-108 3-35 (155)
47 PF11314 DUF3117: Protein of u 21.0 46 0.001 20.8 0.7 26 48-75 18-43 (51)
48 PRK10540 lipoprotein; Provisio 20.6 1.3E+02 0.0028 20.5 2.9 7 1-7 1-7 (72)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-56 Score=382.50 Aligned_cols=171 Identities=64% Similarity=1.082 Sum_probs=163.9
Q ss_pred cCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCC-cCCCCccccCCEEEEeecCceeeeccccCCCCC
Q 027968 45 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-KSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 123 (216)
Q Consensus 45 ~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~-~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~ 123 (216)
.+|+|||||.|++.+.|||+||||.|.||+||+||+.||+|++|.+ ..++.+.|+|+.||||+++|||||||...++|.
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 5799999999999999999999999999999999999999999853 458999999999999999999999999999999
Q ss_pred CCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCC-CCc
Q 027968 124 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEP 202 (216)
Q Consensus 124 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~-~~P 202 (216)
||.+|||..|.||++.++|+++++||||+.|||+||||||||..+.||||++|+|||+||+|++|++.|+...++. .+|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887554 589
Q ss_pred ccceEEeeeeeec
Q 027968 203 KSKVVISNSGEMA 215 (216)
Q Consensus 203 ~~~I~I~~cg~l~ 215 (216)
..+|+|.+||+|.
T Consensus 167 ~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 167 LADVVISDCGELV 179 (372)
T ss_pred ccceEeccccccc
Confidence 9999999999985
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-54 Score=342.91 Aligned_cols=170 Identities=74% Similarity=1.208 Sum_probs=160.8
Q ss_pred ccccccCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhc-cCCCCCcCCCCccccCCEEEEeecCceeeecccc
Q 027968 40 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCT-GEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT 118 (216)
Q Consensus 40 ~~~~~~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~-g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~ 118 (216)
..-++++++|||||++.+...|||+|+||++.+|+||+||.+||. +.++. .|.|++||||+|||+|||||..
T Consensus 33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~-------gY~gS~FhRVi~nfmIQGGd~t 105 (217)
T KOG0880|consen 33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY-------GYKGSKFHRVIPNFMIQGGDFT 105 (217)
T ss_pred CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc-------ccCCceeeeeecCceeecCccc
Confidence 456779999999999999999999999999999999999999998 55443 6999999999999999999999
Q ss_pred CCCCCCCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCC-C
Q 027968 119 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-R 197 (216)
Q Consensus 119 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~-~ 197 (216)
.++|.|+.++||++|+|||+.++|+++|.||||+.|||++|||||||+...+|||++|+|||+|++||+++.+|+... +
T Consensus 106 ~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD 185 (217)
T KOG0880|consen 106 KGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTD 185 (217)
T ss_pred cCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999776 5
Q ss_pred CCCCcccceEEeeeeeecC
Q 027968 198 QSGEPKSKVVISNSGEMAL 216 (216)
Q Consensus 198 ~~~~P~~~I~I~~cg~l~~ 216 (216)
++++|.++++|.+||+|+.
T Consensus 186 ~~dkP~e~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 186 ERDKPLEDVVIANCGELPV 204 (217)
T ss_pred CCCCccccEEEeecCcccc
Confidence 6799999999999999863
No 3
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=6e-49 Score=317.68 Aligned_cols=169 Identities=65% Similarity=1.084 Sum_probs=157.2
Q ss_pred CceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCC
Q 027968 46 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 125 (216)
Q Consensus 46 ~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 125 (216)
++++|||+.+++++.|+|+||||.+.||++|+||++||+|+..+. .++..+|+|+.||||+|+++||+||+..+++.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 678999999999999999999999999999999999998765422 3467799999999999999999999887778888
Q ss_pred ccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 027968 126 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 205 (216)
Q Consensus 126 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~P~~~ 205 (216)
.++++..+++|...+.|+++|+|+|++.++++++|||||++.++++||++|+|||||++|||||++|++.++++++|+++
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~ 173 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP 173 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence 89999999999888999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eEEeeeeeec
Q 027968 206 VVISNSGEMA 215 (216)
Q Consensus 206 I~I~~cg~l~ 215 (216)
|+|++||+|.
T Consensus 174 v~I~~cg~~~ 183 (183)
T PTZ00060 174 VVVTDCGELQ 183 (183)
T ss_pred eEEEEeEEcC
Confidence 9999999983
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=9.3e-49 Score=311.73 Aligned_cols=164 Identities=74% Similarity=1.259 Sum_probs=152.2
Q ss_pred ceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCc
Q 027968 47 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE 126 (216)
Q Consensus 47 ~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~ 126 (216)
|++|||+.+++++.|+|+||||++.||++|+||++||++.++++. +..+|+++.||||+|+|+||+||+..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 689999999999999999999999999999999999987654322 345899999999999999999998877788888
Q ss_pred cccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccce
Q 027968 127 SIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV 206 (216)
Q Consensus 127 ~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~P~~~I 206 (216)
++++..+++|...+.|+++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++++++|+++|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 99999999998889999999999999999999999999999999999999999999999999999999887788999999
Q ss_pred EEeeee
Q 027968 207 VISNSG 212 (216)
Q Consensus 207 ~I~~cg 212 (216)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 5
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-49 Score=293.27 Aligned_cols=169 Identities=58% Similarity=1.004 Sum_probs=160.1
Q ss_pred ccCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCC
Q 027968 44 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 123 (216)
Q Consensus 44 ~~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~ 123 (216)
+-+|.||||+.+.+.+.|||.||||.|.+|+|++||.+.|+|+.- ..++..-|+++.||||+++|+|||||...++|.
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCc
Confidence 457899999999999999999999999999999999999998742 335777899999999999999999999999999
Q ss_pred CCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 027968 124 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP 202 (216)
Q Consensus 124 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~~~P 202 (216)
|-.+||+..|+||++.++|+.+|+|||++++++++|.|||||-..+.+||++|+|||||++|+.++++||.+++ .+.+|
T Consensus 86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 57899
Q ss_pred ccceEEeeeeee
Q 027968 203 KSKVVISNSGEM 214 (216)
Q Consensus 203 ~~~I~I~~cg~l 214 (216)
+-+|.|+.||++
T Consensus 166 Kl~v~i~qCGem 177 (177)
T KOG0879|consen 166 KLPVVIVQCGEM 177 (177)
T ss_pred CCcEEEeecccC
Confidence 999999999985
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.6e-47 Score=317.18 Aligned_cols=167 Identities=36% Similarity=0.550 Sum_probs=151.5
Q ss_pred cCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCc-CCCCccccCCEEEEeecC-ceeeeccccCCCC
Q 027968 45 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPS-FMIQGGDFTLGDG 122 (216)
Q Consensus 45 ~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~Rv~~~-~~iq~Gd~~~~~~ 122 (216)
.+++||||+++++.+.|+|+||||.+.||++|+||++||+|+++.+. .|...+|+|+.||||+++ ++||+||+..
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--- 127 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--- 127 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence 48899999999999999999999999999999999999998876532 344557999999999986 8999999863
Q ss_pred CCCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCC-CCCCC
Q 027968 123 RGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGE 201 (216)
Q Consensus 123 ~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~-~~~~~ 201 (216)
.+.+++|..|++|+...+|+++|+|+|++.++++++||||||+.++++||++|+|||||++|||+|++|++.+ +++++
T Consensus 128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr 206 (249)
T PTZ00221 128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR 206 (249)
T ss_pred -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 2446678899999999999999999999999999999999999999999999999999999999999999887 46789
Q ss_pred cccceEEeeeeeec
Q 027968 202 PKSKVVISNSGEMA 215 (216)
Q Consensus 202 P~~~I~I~~cg~l~ 215 (216)
|+++|+|.+||+|+
T Consensus 207 P~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 207 PLLPVTVSFCGALT 220 (249)
T ss_pred CCCCeEEEECeEec
Confidence 99999999999985
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3e-47 Score=308.27 Aligned_cols=167 Identities=59% Similarity=1.006 Sum_probs=152.1
Q ss_pred CceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCC
Q 027968 46 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 125 (216)
Q Consensus 46 ~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 125 (216)
++++|||+.+++.+.|+|+||||.+.||++|+||++||+++.. ..+....|+++.||||+|+++|||||+..+++.++
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 4789999999999999999999999999999999999987632 11122349999999999999999999887888888
Q ss_pred ccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHHhCCC-CCCCcc
Q 027968 126 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGEPK 203 (216)
Q Consensus 126 ~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi-~G~~vl~~I~~~~~-~~~~P~ 203 (216)
.++++..+++|.....|+++|+|+|+++++++++|||||++.++|+||++|+|||||+ +|||+|++|++.++ ++++|+
T Consensus 96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 8999999999988899999999999999999999999999999999999999999999 89999999998876 678999
Q ss_pred cceEEeeeeee
Q 027968 204 SKVVISNSGEM 214 (216)
Q Consensus 204 ~~I~I~~cg~l 214 (216)
++|+|.+||++
T Consensus 176 ~~i~I~~cG~~ 186 (186)
T PLN03149 176 LACVISECGEM 186 (186)
T ss_pred CCeEEEeCEeC
Confidence 99999999985
No 8
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-46 Score=276.71 Aligned_cols=152 Identities=51% Similarity=0.884 Sum_probs=140.6
Q ss_pred ceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCc
Q 027968 47 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE 126 (216)
Q Consensus 47 ~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~ 126 (216)
|.|+++.+ .|.|++|||-+.||++|+||.+|+ +.+||+|+.||||+++|+||||||+ +.|.||.
T Consensus 10 ~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGa 73 (164)
T KOG0881|consen 10 PNVTLETS-----MGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGA 73 (164)
T ss_pred CeEEEeec-----ccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCcc
Confidence 56666654 899999999999999999999999 7779999999999999999999998 8899999
Q ss_pred cccCCccccccc-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCC-CCCCCccc
Q 027968 127 SIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKS 204 (216)
Q Consensus 127 ~~~~~~~~~e~~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~-~~~~~P~~ 204 (216)
++||..|.||-. +++|...|.|||++.+||+++|||||||.+.++||++|++||||+.||+|+.++-.+. +.+++|+.
T Consensus 74 SIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~ 153 (164)
T KOG0881|consen 74 SIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPID 153 (164)
T ss_pred ccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCcc
Confidence 999999999865 7999999999999999999999999999999999999999999999999999998776 45689999
Q ss_pred ceEEeeeeee
Q 027968 205 KVVISNSGEM 214 (216)
Q Consensus 205 ~I~I~~cg~l 214 (216)
+++|.++-.+
T Consensus 154 ~~kIika~~~ 163 (164)
T KOG0881|consen 154 EVKIIKAYPS 163 (164)
T ss_pred ceeeEeeecC
Confidence 9999987654
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=283.68 Aligned_cols=145 Identities=50% Similarity=0.796 Sum_probs=130.0
Q ss_pred CEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccc
Q 027968 57 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADE 136 (216)
Q Consensus 57 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 136 (216)
.|+.|+|+||||++.||+||+||++|| +.+||+|+.||||+++|+|||||+..+++.+++ +..+++|
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E 71 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE 71 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence 345999999999999999999999999 556999999999999999999999977788877 4889999
Q ss_pred ccccccCC--CeEEEeeecC-CCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-----CCCcccceEE
Q 027968 137 NFKLKHTG--PGVLSMANAG-PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVVI 208 (216)
Q Consensus 137 ~~~~~~~~--~G~vs~~~~~-~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~I~I 208 (216)
.....|++ +|+|||||.+ |++++|||||++.+.++||++|+|||+|++|||+|++|++..+. .+.|..+++|
T Consensus 72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i 151 (158)
T COG0652 72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151 (158)
T ss_pred ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence 88887777 9999999998 99999999999999999999999999999999999999986543 2467788888
Q ss_pred eeeeee
Q 027968 209 SNSGEM 214 (216)
Q Consensus 209 ~~cg~l 214 (216)
.+..++
T Consensus 152 ~~~~~~ 157 (158)
T COG0652 152 LSVKIV 157 (158)
T ss_pred eeeeee
Confidence 887664
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.7e-44 Score=283.86 Aligned_cols=151 Identities=47% Similarity=0.808 Sum_probs=137.6
Q ss_pred EEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccC
Q 027968 51 FDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG 130 (216)
Q Consensus 51 ~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~ 130 (216)
+.+++ +.|+|+||||++.||++|+||++|| +.++|+|+.||||+|++++|+||+. +++.++.++++
T Consensus 2 v~~~T---~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g 67 (159)
T cd01923 2 VRLHT---NKGDLNLELHCDKAPKACENFIKLC----------KKGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWG 67 (159)
T ss_pred EEEEE---ccccEEEEEeCCCChHHHHHHHHHH----------hcCccCCcEEEEEeCCcEEEecccC-CCCCCCccccC
Confidence 44554 4999999999999999999999999 4459999999999999999999986 67888888999
Q ss_pred Cccccccc-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCcccceEE
Q 027968 131 ESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVI 208 (216)
Q Consensus 131 ~~~~~e~~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~~~P~~~I~I 208 (216)
..+++|.. .++|+++|+|+|+++++++++|||||+++++++||++|+|||||++|||+|++|++.++ ++++|+++|+|
T Consensus 68 ~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I 147 (159)
T cd01923 68 KPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKI 147 (159)
T ss_pred CccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEE
Confidence 99988854 67899999999999999999999999999999999999999999999999999998764 67899999999
Q ss_pred eeeeeec
Q 027968 209 SNSGEMA 215 (216)
Q Consensus 209 ~~cg~l~ 215 (216)
.+|+++.
T Consensus 148 ~~~~i~~ 154 (159)
T cd01923 148 EDTSVFV 154 (159)
T ss_pred EEeEEEe
Confidence 9999874
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7.9e-44 Score=278.88 Aligned_cols=142 Identities=55% Similarity=0.879 Sum_probs=131.5
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccc
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
|+.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|++|+||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 459999999999999999999999994 459999999999999999999986 678888888998999887
Q ss_pred c-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEee
Q 027968 138 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISN 210 (216)
Q Consensus 138 ~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~~~P~~~I~I~~ 210 (216)
. .++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++.++ ++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 6 78899899999999999999999999999999999999999999999999999998874 5789999999985
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=7.1e-44 Score=278.51 Aligned_cols=142 Identities=52% Similarity=0.898 Sum_probs=131.2
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccc
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
|+.|+|+||||.+.||++|+||++||+ .+||+++.||||+|+|++||||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 459999999999999999999999994 459999999999999999999986 667778888898898884
Q ss_pred -cccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccceEEee
Q 027968 138 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN 210 (216)
Q Consensus 138 -~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~P~~~I~I~~ 210 (216)
..++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||||++|++.++++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 4788999999999999999999999999999999999999999999999999999998877889999999974
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.3e-43 Score=279.00 Aligned_cols=144 Identities=47% Similarity=0.781 Sum_probs=132.6
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccc
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
|+.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|++||||+. +++.++.++++..+++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 75 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF 75 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence 349999999999999999999999995 449999999999999999999986 667788888899999887
Q ss_pred c-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEeeee
Q 027968 138 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISNSG 212 (216)
Q Consensus 138 ~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~~~P~~~I~I~~cg 212 (216)
. .++|+++|+|+|+++++++++|||||+++++++||++|+|||||++|||+|++|++.++ ++++|+.+|+|.+|.
T Consensus 76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 5 57888999999999999999999999999999999999999999999999999998875 678999999999984
No 14
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=289.66 Aligned_cols=165 Identities=62% Similarity=1.037 Sum_probs=160.0
Q ss_pred ccCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCC
Q 027968 44 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 123 (216)
Q Consensus 44 ~~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~ 123 (216)
.-+|.+|+++.+.....|||+++|..|..|.+++||..||+++.|. -|+|+.||||+|.|++||||.++++|.
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gf-------gykgssfhriip~fmcqggdftn~ngt 206 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGF-------GYKGSSFHRIIPKFMCQGGDFTNGNGT 206 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCcc-------CccccchhhhhhhhhccCCccccCCCC
Confidence 4578999999999999999999999999999999999999999876 499999999999999999999999999
Q ss_pred CCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcc
Q 027968 124 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPK 203 (216)
Q Consensus 124 ~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~P~ 203 (216)
||.+|||..|.||++.++|..+|+|||+++++|++||||||+.....+||++|+|||.|++||+|++++++.+++.++|.
T Consensus 207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~ 286 (298)
T KOG0111|consen 207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQ 286 (298)
T ss_pred CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeeec
Q 027968 204 SKVVISNSGEMA 215 (216)
Q Consensus 204 ~~I~I~~cg~l~ 215 (216)
+.|+|.+||+++
T Consensus 287 qkv~i~~cge~~ 298 (298)
T KOG0111|consen 287 QKVKIVECGEIE 298 (298)
T ss_pred eEEEEEeccccC
Confidence 999999999974
No 15
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.3e-42 Score=281.96 Aligned_cols=144 Identities=33% Similarity=0.515 Sum_probs=123.9
Q ss_pred EeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccccc
Q 027968 59 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 138 (216)
Q Consensus 59 ~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 138 (216)
+.|+|+||||++.||++|+||++|| +.+||+|+.||||+|+|++|||++....+ ...++..+.+|..
T Consensus 36 ~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~ 102 (190)
T PRK10903 36 SAGNIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEAD 102 (190)
T ss_pred ccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCccc
Confidence 3899999999999999999999999 55599999999999999999999764322 1223556777765
Q ss_pred ccccCCCeEEEeeecC-CCCCCccEEEEccCCCCCCC-----CCcEEEEEEcCHHHHHHHHhCCCC-----CCCcccceE
Q 027968 139 KLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVV 207 (216)
Q Consensus 139 ~~~~~~~G~vs~~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~VfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~I~ 207 (216)
...|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|++.+++ +++|.++|+
T Consensus 103 ~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 182 (190)
T PRK10903 103 NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 182 (190)
T ss_pred ccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence 5567789999999965 89999999999999999984 899999999999999999987754 369999999
Q ss_pred Eeeeeeec
Q 027968 208 ISNSGEMA 215 (216)
Q Consensus 208 I~~cg~l~ 215 (216)
|.+|++++
T Consensus 183 I~~~~v~~ 190 (190)
T PRK10903 183 ILSAKVLP 190 (190)
T ss_pred EEEEEEeC
Confidence 99999874
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.4e-43 Score=278.65 Aligned_cols=147 Identities=39% Similarity=0.649 Sum_probs=130.1
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccC-------
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG------- 130 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~------- 130 (216)
|+.|+|+||||++.||++|+||++||+ .++|+|+.||||+++++|||||+. +++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 459999999999999999999999994 449999999999999999999986 56666666654
Q ss_pred Ccccccc-cccccCCCeEEEeeecCCCCCCccEEEEccC-CCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCcccceE
Q 027968 131 ESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVV 207 (216)
Q Consensus 131 ~~~~~e~-~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~-~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~~~P~~~I~ 207 (216)
..+.+|. ..++|+++|+|+|++.++++++|||||++++ .++||++|+|||||++|||+|++|++.++ ++++|+++|+
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 2455554 3678999999999999999999999999975 89999999999999999999999998764 6789999999
Q ss_pred Eeeeeeec
Q 027968 208 ISNSGEMA 215 (216)
Q Consensus 208 I~~cg~l~ 215 (216)
|.+|++|.
T Consensus 153 I~~~~i~~ 160 (166)
T cd01921 153 IKHTHILD 160 (166)
T ss_pred EEEEEEEC
Confidence 99999985
No 17
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=296.61 Aligned_cols=159 Identities=45% Similarity=0.766 Sum_probs=149.0
Q ss_pred ccccCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCC
Q 027968 42 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD 121 (216)
Q Consensus 42 ~~~~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~ 121 (216)
...+..+-|+.+.++ .|.|-|||++|.+|.+|+||++|| +++||+|+.|||.+.||+||||||+ +.
T Consensus 271 y~rvKkkgyvrl~Tn---~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GT 336 (518)
T KOG0883|consen 271 YTRVKKKGYVRLVTN---HGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GT 336 (518)
T ss_pred hccccccceEEEecc---CCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CC
Confidence 346678899999987 999999999999999999999999 6779999999999999999999998 89
Q ss_pred CCCCccccCCccccccc-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CC
Q 027968 122 GRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QS 199 (216)
Q Consensus 122 ~~~~~~~~~~~~~~e~~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~-~~ 199 (216)
|.||.+|||.+|.||.. .+.|+.||+|||+++|||++||||||+.+++.+||++|+|||||+.|+++|.+|+++++ +.
T Consensus 337 G~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~ 416 (518)
T KOG0883|consen 337 GRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEK 416 (518)
T ss_pred CCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCC
Confidence 99999999999999965 79999999999999999999999999999999999999999999999999999999884 56
Q ss_pred CCcccceEEeeeeee
Q 027968 200 GEPKSKVVISNSGEM 214 (216)
Q Consensus 200 ~~P~~~I~I~~cg~l 214 (216)
++|+.+|+|.+.-++
T Consensus 417 DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 417 DRPKEEIKIEDAIVF 431 (518)
T ss_pred CCcccceEEeeeEEe
Confidence 899999999988664
No 18
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6.4e-41 Score=268.25 Aligned_cols=146 Identities=40% Similarity=0.691 Sum_probs=133.3
Q ss_pred EeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccccc
Q 027968 59 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 138 (216)
Q Consensus 59 ~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 138 (216)
+.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|++||||+. +++.++.++++..+++|..
T Consensus 13 s~G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~ 81 (171)
T cd01925 13 TAGDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFH 81 (171)
T ss_pred ccccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccc
Confidence 38999999999999999999999994 459999999999999999999986 6788888899989988865
Q ss_pred -ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHHhCCC-CCCCcccceEEeeeeeec
Q 027968 139 -KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGEPKSKVVISNSGEMA 215 (216)
Q Consensus 139 -~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi-~G~~vl~~I~~~~~-~~~~P~~~I~I~~cg~l~ 215 (216)
.++|+++|+|+|+++++++++|||||+++++++||++|+|||||+ ++++++++|+...+ ++++|.++|+|.+|+++.
T Consensus 82 ~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 82 SRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred cCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 577899999999999999999999999999999999999999999 46888999998764 568999999999999875
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=5.9e-40 Score=260.82 Aligned_cols=144 Identities=35% Similarity=0.578 Sum_probs=120.4
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccc
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
|+.|+|+||||++.||++|+||++|| +.+||+++.||||+|+|+||||++..+.+.. .++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~ 72 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEA 72 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcc
Confidence 35999999999999999999999999 4459999999999999999999975433221 2345666664
Q ss_pred cccccCCCeEEEeeecC-CCCCCccEEEEccCCCCCC-------C-CCcEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 027968 138 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLD-------G-RHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK 203 (216)
Q Consensus 138 ~~~~~~~~G~vs~~~~~-~~~~~sqF~Itl~~~~~ld-------~-~~~VfG~Vi~G~~vl~~I~~~~~~-----~~~P~ 203 (216)
....++.+|+|||++.+ |++++|||||++.++++|| + +|+|||||++|||+|++|++.+++ +++|.
T Consensus 73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence 43344579999999975 9999999999999988776 3 799999999999999999987754 36899
Q ss_pred cceEEeeeeee
Q 027968 204 SKVVISNSGEM 214 (216)
Q Consensus 204 ~~I~I~~cg~l 214 (216)
.+|+|.+|.+.
T Consensus 153 ~~v~I~~~~i~ 163 (164)
T PRK10791 153 EDVIIESVTVS 163 (164)
T ss_pred CCeEEEEEEEe
Confidence 99999999764
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.9e-39 Score=255.94 Aligned_cols=140 Identities=36% Similarity=0.528 Sum_probs=119.8
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccc
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
|+.|+|+||||++.||++|+||++|| +.+||+|+.||||+|+|++|||++....+. ..++..+.+|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 45999999999999999999999999 455999999999999999999998744322 22345666676
Q ss_pred cccccCCCeEEEeeecC-CCCCCccEEEEccCCCCCCC-----CCcEEEEEEcCHHHHHHHHhCCCCC-----CCcccce
Q 027968 138 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKSKV 206 (216)
Q Consensus 138 ~~~~~~~~G~vs~~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~VfG~Vi~G~~vl~~I~~~~~~~-----~~P~~~I 206 (216)
....|+++|+|+|++++ +++++|||||++++.++||. +|+|||+|++|||+|++|++.+++. ++|+.+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 55556789999999965 89999999999999999995 7999999999999999999887543 5899999
Q ss_pred EEee
Q 027968 207 VISN 210 (216)
Q Consensus 207 ~I~~ 210 (216)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 9986
No 21
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=5.3e-39 Score=252.92 Aligned_cols=151 Identities=52% Similarity=0.851 Sum_probs=129.7
Q ss_pred EEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCC-ccc
Q 027968 50 YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG-ESI 128 (216)
Q Consensus 50 ~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~-~~~ 128 (216)
|++|++++ +|+|+||||++.||++|+||++||+. ++|+|+.|||++|+++||+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~----------~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTS----------GFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHT----------TSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcc----------cccCCceeecccccceeeeeeccCCCCccccccc
Confidence 78999865 89999999999999999999999953 489999999999999999999875433111 122
Q ss_pred cCCccccccc-ccccCCCeEEEeeecC--CCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 027968 129 FGESFADENF-KLKHTGPGVLSMANAG--PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 205 (216)
Q Consensus 129 ~~~~~~~e~~-~~~~~~~G~vs~~~~~--~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~P~~~ 205 (216)
.+..+++|.. ...++++|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|++.++++ +|.++
T Consensus 69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~ 147 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD 147 (155)
T ss_dssp TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence 3446777774 3344479999999975 888999999999999999999999999999999999999988777 99999
Q ss_pred eEEeeeee
Q 027968 206 VVISNSGE 213 (216)
Q Consensus 206 I~I~~cg~ 213 (216)
|+|.+||+
T Consensus 148 v~I~~cgv 155 (155)
T PF00160_consen 148 VTISSCGV 155 (155)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeEC
Confidence 99999996
No 22
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=287.56 Aligned_cols=145 Identities=53% Similarity=0.852 Sum_probs=136.7
Q ss_pred CEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccc
Q 027968 57 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADE 136 (216)
Q Consensus 57 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 136 (216)
-|+.|+|.|.||+++||++|+||...| +++||||..||||+++|+||+|||. ++|.||.+|||..|+||
T Consensus 410 htt~gdi~~kl~p~ecpktvenf~th~----------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfede 478 (558)
T KOG0882|consen 410 HTTQGDIHIKLYPEECPKTVENFTTHS----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDE 478 (558)
T ss_pred EecccceEEEecccccchhhhhhhccc----------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhh
Confidence 456899999999999999999999999 6669999999999999999999998 89999999999999999
Q ss_pred cc-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 027968 137 NF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG 212 (216)
Q Consensus 137 ~~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~-~~~~~P~~~I~I~~cg 212 (216)
.. .++|+++-+||||+.|||++|||||||..+.||||++|+|||||+.||||+++|+++. +++++|.++|.|.+-.
T Consensus 479 fh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 479 FHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred cCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 76 6999999999999999999999999999999999999999999999999999999876 5679999999998754
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-39 Score=237.13 Aligned_cols=142 Identities=47% Similarity=0.743 Sum_probs=131.7
Q ss_pred EeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccccc
Q 027968 59 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 138 (216)
Q Consensus 59 ~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 138 (216)
..|+|.||||.+.+|++|+||+.+|. ..||+++.|||-+|+|++|+|++. ..|.||.+|||..|+||..
T Consensus 8 ~~gdikiev~~e~tpktce~~l~~~~----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~ 76 (161)
T KOG0884|consen 8 DVGDIKIEVFCERTPKTCENFLALCA----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYS 76 (161)
T ss_pred ccCcEEEEEEecCChhHHHHHHHHhh----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHH
Confidence 38999999999999999999999994 449999999999999999999997 7899999999999999976
Q ss_pred -ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC--CCCcccceEEeee
Q 027968 139 -KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ--SGEPKSKVVISNS 211 (216)
Q Consensus 139 -~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~--~~~P~~~I~I~~c 211 (216)
-++|+.||.|||++++|++++||||||.+.+++||-+|+|||+||+|+|.||+|+..+.+ ..+|..++.|.+-
T Consensus 77 ~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 589999999999999999999999999999999999999999999999999999988743 3789988888764
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=7.4e-38 Score=244.19 Aligned_cols=140 Identities=60% Similarity=0.933 Sum_probs=124.4
Q ss_pred EeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCccccccc
Q 027968 59 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 138 (216)
Q Consensus 59 ~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 138 (216)
+.|+|+||||++.||++|+||++||++ ++|+|+.|||++|++++|+|++......+ +.++..+++|..
T Consensus 5 ~~G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~ 72 (146)
T cd00317 5 TKGRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENF 72 (146)
T ss_pred ccCcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccc
Confidence 479999999999999999999999954 48999999999999999999987544322 345677888877
Q ss_pred ccc-cCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCCcccceEEee
Q 027968 139 KLK-HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPKSKVVISN 210 (216)
Q Consensus 139 ~~~-~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~-~~~P~~~I~I~~ 210 (216)
... |+++|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|++.+++ +++|.++|+|.+
T Consensus 73 ~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 73 PLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 655 889999999999999999999999999999999999999999999999999988754 899999999974
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=248.40 Aligned_cols=163 Identities=63% Similarity=1.130 Sum_probs=155.6
Q ss_pred cCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEe---ecCceeeeccccCCC
Q 027968 45 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI---IPSFMIQGGDFTLGD 121 (216)
Q Consensus 45 ~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv---~~~~~iq~Gd~~~~~ 121 (216)
++|++|+|+.+++.++|++++|||.|..|++++||..||+++++. -|+++.|||+ ++++++||||.+..+
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~-------~yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGF-------GYKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCcc-------ccccchhhhccccccceeeccCcccccC
Confidence 478999999999999999999999999999999999999988765 3999999993 447999999999999
Q ss_pred CCCCccccCCcccccccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCC
Q 027968 122 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 201 (216)
Q Consensus 122 ~~~~~~~~~~~~~~e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~~~~~~ 201 (216)
++++.++|++.|+||++.++|..+|.|+|++.+|++++|||||+.....|||++|+|||+|.+||+++++|+....++++
T Consensus 75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk 154 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK 154 (167)
T ss_pred CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccceEEeeeeee
Q 027968 202 PKSKVVISNSGEM 214 (216)
Q Consensus 202 P~~~I~I~~cg~l 214 (216)
|.++|.|.+||+|
T Consensus 155 ~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 155 TSKKITIADCGQL 167 (167)
T ss_pred ccccEEEecCCcC
Confidence 9999999999986
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.4e-37 Score=246.33 Aligned_cols=128 Identities=32% Similarity=0.531 Sum_probs=108.6
Q ss_pred CEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCC--------------
Q 027968 57 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG-------------- 122 (216)
Q Consensus 57 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~-------------- 122 (216)
.|+.|+|+||||++.||++|+||++|| +.+||+++.||||+|+|++||||+...+.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 356999999999999999999999999 55699999999999999999999874311
Q ss_pred ------CCCccccCCcc-----cccccccccCCCeEEEeeecC--CCCCCccEEEEcc-------CCCCCCCCCcEEEEE
Q 027968 123 ------RGGESIFGESF-----ADENFKLKHTGPGVLSMANAG--PDTNGSQFFITTV-------ITSWLDGRHVVFGKV 182 (216)
Q Consensus 123 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~vs~~~~~--~~~~~sqF~Itl~-------~~~~ld~~~~VfG~V 182 (216)
..+.++++..+ .++...+.|+++|+|+|++++ +++++|||||+++ +.++||++|+|||+|
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 11223444433 245566788899999999987 6999999999998 789999999999999
Q ss_pred EcCHHHHHHHHh
Q 027968 183 LSGMDVVRKIEA 194 (216)
Q Consensus 183 i~G~~vl~~I~~ 194 (216)
++|||||++|+.
T Consensus 153 veG~dvl~~I~~ 164 (176)
T cd01924 153 TDGLDILRELKV 164 (176)
T ss_pred ecCHHHHHhhcC
Confidence 999999999974
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=253.47 Aligned_cols=157 Identities=39% Similarity=0.656 Sum_probs=140.6
Q ss_pred cccCceEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCC
Q 027968 43 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG 122 (216)
Q Consensus 43 ~~~~~~v~~~i~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~ 122 (216)
|+.+.+|.+..+ .|+|.||||+..||++|+||++||. .+||+|+.|||++|+|.+|||||. ++|
T Consensus 9 P~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~~g 72 (439)
T KOG0885|consen 9 PPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-GTG 72 (439)
T ss_pred CCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-CCC
Confidence 345667766654 8999999999999999999999994 459999999999999999999997 889
Q ss_pred CCCccccCCccccccc-ccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHHhCC-CCC
Q 027968 123 RGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEG-RQS 199 (216)
Q Consensus 123 ~~~~~~~~~~~~~e~~-~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi-~G~~vl~~I~~~~-~~~ 199 (216)
.||.+|||.+|.+|.+ ++.++++|+|+|++.+.+.+|||||+||++.|+|++++++||+|+ +-+-.+-+|..+. +.+
T Consensus 73 tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~ 152 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDAD 152 (439)
T ss_pred CCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccc
Confidence 9999999999999976 688899999999999999999999999999999999999999999 5666777777665 447
Q ss_pred CCcccceEEeeeeeec
Q 027968 200 GEPKSKVVISNSGEMA 215 (216)
Q Consensus 200 ~~P~~~I~I~~cg~l~ 215 (216)
.||..+-+|.+|.+|.
T Consensus 153 ~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 153 DRPVDPPKIKSVEVLI 168 (439)
T ss_pred cCCCCccceeeeEeec
Confidence 8999999999999874
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-34 Score=242.63 Aligned_cols=147 Identities=42% Similarity=0.657 Sum_probs=133.8
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcc----
Q 027968 58 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESF---- 133 (216)
Q Consensus 58 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~---- 133 (216)
|++|+|+|+||-+.+|.+|.||++|| |..||+.|.||.|..+|.+|.|||+ +.|.||.++|+..+
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~ 75 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA 75 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence 34899999999999999999999999 6779999999999999999999998 69999999987543
Q ss_pred ---cccc-cccccCCCeEEEeeecCCCCCCccEEEEccC-CCCCCCCCcEEEEEEcCHHHHHHHH-hCCCCCCCcccceE
Q 027968 134 ---ADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVV 207 (216)
Q Consensus 134 ---~~e~-~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~-~~~ld~~~~VfG~Vi~G~~vl~~I~-~~~~~~~~P~~~I~ 207 (216)
.+|. ..++|.+.|+|||++.+.+.+||||||||++ ...||++|+|||+|.+|+|+|.+|+ +..+++++|.++|+
T Consensus 76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR 155 (479)
T KOG0415|consen 76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR 155 (479)
T ss_pred hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence 4443 3689999999999999999999999999987 6799999999999999999999997 56788999999999
Q ss_pred Eeeeeeec
Q 027968 208 ISNSGEMA 215 (216)
Q Consensus 208 I~~cg~l~ 215 (216)
|.+.=+|+
T Consensus 156 I~HTiiLd 163 (479)
T KOG0415|consen 156 IKHTIILD 163 (479)
T ss_pred eeeeEEec
Confidence 99988775
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.3e-05 Score=68.63 Aligned_cols=140 Identities=24% Similarity=0.262 Sum_probs=105.9
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCC----ccccC-Ccccc-
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG----ESIFG-ESFAD- 135 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~----~~~~~-~~~~~- 135 (216)
.|.|+++.+-.|.-++-|...| +..|+++..|.||.+.+++|.||.......+| ++..+ ..+++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFC----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcC----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 8999999999999999999999 66699999999999999999998664333222 11111 12333
Q ss_pred -cccccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 027968 136 -ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG 212 (216)
Q Consensus 136 -e~~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~~~~-~~~~~P~~~I~I~~cg 212 (216)
.+..++|. .-++..........+-+|++.-...+-+..+..|||++.+|-++++.|+... +.+..|++++.|.+..
T Consensus 183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 34566665 4455555544444566888888888889999999999999999999998665 5567888888887643
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.74 E-value=0.007 Score=55.38 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEee--cCceeeeccccCCCCCCCccccCCcccccccc
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII--PSFMIQGGDFTLGDGRGGESIFGESFADENFK 139 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~--~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 139 (216)
.+.+||.+ .+|.++++|+.+.+.+ ++ +|- -+-+| +..+..+...+.|+..
T Consensus 202 y~evE~~~-~~p~s~EH~la~~~~G----------~~------~Vd~~tsTfi-----------~d~~L~g~~~p~En~~ 253 (503)
T TIGR03268 202 YVEVELDP-NAPVSVEHFLALMEDG----------TF------RVDYRTSTFI-----------SDDSLRGLDKPEENIE 253 (503)
T ss_pred EEEEEEcC-CCChhHHHHHHHHhCC----------eE------EEeeeecceE-----------ecccccCccCCccccC
Confidence 56677654 5699999999999544 22 221 11111 0111224455666554
Q ss_pred cccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHH
Q 027968 140 LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 140 ~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~ 193 (216)
. ..+|+|.+.+.|.. ....||-..+.+ -.-.|+|+|+|+.|||+++--+
T Consensus 254 ~--R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 254 K--RRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred c--ccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 3 34899999998744 346888876644 2346999999999999987554
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.72 E-value=0.0065 Score=55.70 Aligned_cols=99 Identities=23% Similarity=0.350 Sum_probs=63.5
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeec--CceeeeccccCCCCCCCccccCCcccccccc
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP--SFMIQGGDFTLGDGRGGESIFGESFADENFK 139 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~--~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 139 (216)
.+.+||.++ +|.++++|+.+.+.+ ++ +|-. +-+| + ..+..+...+.|+..
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~~G----------~f------~Vd~~tstfI--~---------d~~L~g~~~p~En~~ 256 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLEDG----------TF------EVDFETSTFI--A---------DDRLQGLKIPEENFE 256 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHhCC----------eE------EEeeeecceE--e---------eccccCccCCccccC
Confidence 566777554 599999999999544 22 2211 1111 0 111224455666554
Q ss_pred cccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHH
Q 027968 140 LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 140 ~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~ 193 (216)
.+ .+|+|.+.+.|.. ....||-..+.+ -.-.|+|+|+|++|||+++--+
T Consensus 257 ~R--~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 257 PR--RRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred cc--ccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 33 4899999998744 447889876654 2346999999999999987543
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.39 E-value=0.031 Score=51.30 Aligned_cols=113 Identities=21% Similarity=0.336 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccccccc
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 141 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 141 (216)
-|.||||.+.||.++..|+++. |=+.. .-| -..+|=..++.++.-|+... ...+.+||..-.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~~~-~VG------~L~v~F~~~d~~mFk~~~~~----------~k~LiPEN~P~~ 437 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLKTK-PVG------RLPVHFAFKEMIMFKGNKEL----------AKGLIPENTPED 437 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCccc-ccc------eeEEEEEeCCeeEeccCchh----------ccccCCCCCCCC
Confidence 5899999999999999999986 21100 001 12344445554444333321 223334544444
Q ss_pred cCCCeEEEeeecCCCCCCccEEEEc------cCC-CCCCCCCcEEEEEEcCHHHHHHHHh
Q 027968 142 HTGPGVLSMANAGPDTNGSQFFITT------VIT-SWLDGRHVVFGKVLSGMDVVRKIEA 194 (216)
Q Consensus 142 ~~~~G~vs~~~~~~~~~~sqF~Itl------~~~-~~ld~~~~VfG~Vi~G~~vl~~I~~ 194 (216)
....|.+++.|......| -.=|=| +|. ..+++. .++|+|++++|.|+++..
T Consensus 438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gT-NIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGT-NIIGRVVEGMERLKGLKE 495 (503)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCc-ceEEEecCChhHhccccc
Confidence 445677777664321111 111222 222 245554 567999999999998864
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.018 Score=51.29 Aligned_cols=101 Identities=25% Similarity=0.387 Sum_probs=65.4
Q ss_pred eeEEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEee--cCceeeeccccCCCCCCCccccCCcccccc
Q 027968 60 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII--PSFMIQGGDFTLGDGRGGESIFGESFADEN 137 (216)
Q Consensus 60 ~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~--~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 137 (216)
.-.+.+||.++ +|+++++|+.|...+ ..||- .|-++ +..+......+.|+
T Consensus 202 fTy~eve~s~n-sP~saEH~lalmedG----------------~lri~~~tntfi-----------s~~~lq~~~~~~en 253 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALMEDG----------------TLRIDVTTNTFI-----------SDDTLQEEKVPEEN 253 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHhhcc----------------eEEEEEecccee-----------eccccccccCChhh
Confidence 44677888665 599999999998433 12331 22222 11122245566677
Q ss_pred cccccCCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHH
Q 027968 138 FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 138 ~~~~~~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi~G~~vl~~I~ 193 (216)
+.+. .+|.++..+.|.+ ...-||--.+.+. --.|.|+|||++|||++|--+
T Consensus 254 ~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 254 FDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence 6655 3899999987643 3468888755432 235899999999999987554
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.83 E-value=0.079 Score=48.77 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCceeeeccccCCCCCCCccccCCcccccccccc
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 141 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 141 (216)
-|.||||.+.||.++..|+++. |=.. -.-| -..+|=..++.++.-|+... ...+.+||..-.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~~-~~VG------~L~v~F~~~d~~lFk~~~~~----------~k~liPEN~P~~ 440 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLKT-KPVG------KLPVYFKYEDTYLFKGNIEY----------AKGLLPENTPED 440 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCcc-cccc------eeEEEEEeCCeEEEccChhh----------ccccCCCCCCCC
Confidence 5899999999999999999987 1100 0001 12444455665554444332 223344555444
Q ss_pred cCCCeEEEeeecCCCCCCccEEEEc------cCC-CCCCCCCcEEEEEEcCHHHHHHHHh
Q 027968 142 HTGPGVLSMANAGPDTNGSQFFITT------VIT-SWLDGRHVVFGKVLSGMDVVRKIEA 194 (216)
Q Consensus 142 ~~~~G~vs~~~~~~~~~~sqF~Itl------~~~-~~ld~~~~VfG~Vi~G~~vl~~I~~ 194 (216)
....|.+++.|......| -.=|=+ +|. ..+++. .++|+|+ ++|-|+++..
T Consensus 441 ~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 441 KVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhccccc
Confidence 555677777664321111 111112 222 245553 5789999 9999998864
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.05 E-value=0.17 Score=39.46 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=55.0
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeecCc--eeeeccccCCCCCCCccccCCcccccccc
Q 027968 62 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSF--MIQGGDFTLGDGRGGESIFGESFADENFK 139 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~--~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 139 (216)
.++.+|..|.||+||+.|.+.. =|.+..+|-...+. ++.-++... ...+.||..
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T 64 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHT 64 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEE
T ss_pred EEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCc
Confidence 6889999999999999999998 36676777665543 444454320 111223332
Q ss_pred cccCCCeEEEeee---cCCC--CC-CccEEEEccCCC--------CCCCCCcEEEEEEcCHHHHHHHH
Q 027968 140 LKHTGPGVLSMAN---AGPD--TN-GSQFFITTVITS--------WLDGRHVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 140 ~~~~~~G~vs~~~---~~~~--~~-~sqF~Itl~~~~--------~ld~~~~VfG~Vi~G~~vl~~I~ 193 (216)
.. -.+|-|.+-- .... .. -++.-|.++... ++- -.+|++|++|+|-|.++-
T Consensus 65 ~~-P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~ 129 (147)
T PF12903_consen 65 VT-PIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEAC 129 (147)
T ss_dssp SS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHH
T ss_pred cc-CCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHH
Confidence 22 2356666651 1111 11 245555554432 233 379999999999887774
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.38 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCchhHHHHHHhh
Q 027968 62 RIVMGLFGKAVPKTVENFRALC 83 (216)
Q Consensus 62 ~ivieL~~~~aP~~~~nF~~l~ 83 (216)
-|.||||.+.||.++..|.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 4899999999999999999886
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=78.41 E-value=12 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCeEEEeeecCCCCCCccEEEEccCCC-------CCCCCCcEEEEEEcCHHHHHHHH
Q 027968 144 GPGVLSMANAGPDTNGSQFFITTVITS-------WLDGRHVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 144 ~~G~vs~~~~~~~~~~sqF~Itl~~~~-------~ld~~~~VfG~Vi~G~~vl~~I~ 193 (216)
..|-|+.-..+. .|.|..++.| .+-....++|||.+|.+.++++.
T Consensus 61 ~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 61 EAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp -TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred cCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 478888865433 3888887764 34456889999999999998885
No 38
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=58.50 E-value=6.6 Score=28.78 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=23.9
Q ss_pred EEEEccCCCCCCCC------CcEEEEEEcCHHHHHHHH
Q 027968 162 FFITTVITSWLDGR------HVVFGKVLSGMDVVRKIE 193 (216)
Q Consensus 162 F~Itl~~~~~ld~~------~~VfG~Vi~G~~vl~~I~ 193 (216)
..+.++..|--|.+ ..|+||++++||.|..+.
T Consensus 79 lClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~ 116 (126)
T COG2164 79 LCLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVD 116 (126)
T ss_pred EEEEecCCcCcccccCccchHHHHHHHHhhHHhhhccc
Confidence 55555666666655 357999999999998875
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.99 E-value=10 Score=33.89 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCeEEEeeecCCCCCCccEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHH
Q 027968 143 TGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIE 193 (216)
Q Consensus 143 ~~~G~vs~~~~~~~~~~sqF~Itl~~~~~ld~~~~VfG~Vi-~G~~vl~~I~ 193 (216)
..+|.|.+.|..-..-..+.-|++.+.|. |.+..|+|+|. +-+.+|+-|.
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 45899999997655666799999999885 88899999999 5688888885
No 40
>PRK02710 plastocyanin; Provisional
Probab=42.17 E-value=25 Score=26.04 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=10.3
Q ss_pred CcchhhhHHHHHHHHHHHHh
Q 027968 1 MATKTRLVSVALLWALNRLS 20 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (216)
||++++....+++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFG 20 (119)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 67766665444444433333
No 41
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=36.97 E-value=35 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.2
Q ss_pred EcCHHHHHHHHhCCCCCCCcccceEEee
Q 027968 183 LSGMDVVRKIEAEGRQSGEPKSKVVISN 210 (216)
Q Consensus 183 i~G~~vl~~I~~~~~~~~~P~~~I~I~~ 210 (216)
++|.||++++.+. .....+.-||..++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 4799999999877 45556667777665
No 42
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.70 E-value=82 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=19.7
Q ss_pred CEEeeEEEEEEeCCCC--ch-hHHHHHHhhccC
Q 027968 57 GKPIGRIVMGLFGKAV--PK-TVENFRALCTGE 86 (216)
Q Consensus 57 ~t~~G~ivieL~~~~a--P~-~~~nF~~l~~g~ 86 (216)
....|.|-+.+|.+.. |. --.+|-+-|+..
T Consensus 40 knkqGqic~aVf~s~qgfp~~~~~~f~ractsi 72 (151)
T COG4704 40 KNKQGQICFAVFASEQGFPMSDPSRFQRACTSI 72 (151)
T ss_pred hhccCcEEEEEEeccccCCCCCchHHhhhcccc
Confidence 3458999999998753 22 245777777643
No 43
>COG5510 Predicted small secreted protein [Function unknown]
Probab=35.13 E-value=49 Score=20.26 Aligned_cols=6 Identities=50% Similarity=0.390 Sum_probs=2.9
Q ss_pred Ccchhh
Q 027968 1 MATKTR 6 (216)
Q Consensus 1 ~~~~~~ 6 (216)
||+++.
T Consensus 1 mmk~t~ 6 (44)
T COG5510 1 MMKKTI 6 (44)
T ss_pred CchHHH
Confidence 455543
No 44
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.41 E-value=83 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=19.2
Q ss_pred CCEEeeEEEEEEeCCCCchhHHHHHHh
Q 027968 56 GGKPIGRIVMGLFGKAVPKTVENFRAL 82 (216)
Q Consensus 56 ~~t~~G~ivieL~~~~aP~~~~nF~~l 82 (216)
.+.....|.++|..|.+|.--=|=.++
T Consensus 59 ~~~D~a~i~fdl~aDls~lfnWNtKq~ 85 (175)
T PF04573_consen 59 KKKDYAKITFDLDADLSPLFNWNTKQL 85 (175)
T ss_pred CCceEEEEEEEeccCcccceeeeeeEE
Confidence 355578999999999999654444433
No 45
>PF15284 PAGK: Phage-encoded virulence factor
Probab=26.96 E-value=89 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=4.9
Q ss_pred chhhhHHHHHHHH
Q 027968 3 TKTRLVSVALLWA 15 (216)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (216)
++.+...++++++
T Consensus 2 kk~ksifL~l~~~ 14 (61)
T PF15284_consen 2 KKFKSIFLALVFI 14 (61)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 46
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=1.4e+02 Score=23.56 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=29.1
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCCCcCCCCccccCCEEEEeec
Q 027968 63 IVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 108 (216)
Q Consensus 63 ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~Rv~~ 108 (216)
+.|-||.-.-|..+.|.+++| .--|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~c-------------a~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTC-------------AATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHH-------------HhcCCeEEEEcc
Confidence 578899999999999999999 567889999976
No 47
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.95 E-value=46 Score=20.85 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=17.3
Q ss_pred eEEEEEEECCEEeeEEEEEEeCCCCchh
Q 027968 48 KVYFDIEVGGKPIGRIVMGLFGKAVPKT 75 (216)
Q Consensus 48 ~v~~~i~~~~t~~G~ivieL~~~~aP~~ 75 (216)
.+.+.+-++|. ||++|||.++.|-..
T Consensus 18 ~ivmRvPleGG--GRLVvEl~~~Ea~~L 43 (51)
T PF11314_consen 18 GIVMRVPLEGG--GRLVVELNPDEAKEL 43 (51)
T ss_pred eEEEEEecCCC--cEEEEEeCHHHHHHH
Confidence 34455555443 899999988876443
No 48
>PRK10540 lipoprotein; Provisional
Probab=20.60 E-value=1.3e+02 Score=20.45 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.9
Q ss_pred Ccchhhh
Q 027968 1 MATKTRL 7 (216)
Q Consensus 1 ~~~~~~~ 7 (216)
||...++
T Consensus 1 ~~~~~kr 7 (72)
T PRK10540 1 MFVTSKK 7 (72)
T ss_pred CchHHHH
Confidence 4444433
Done!