Query 027971
Match_columns 216
No_of_seqs 108 out of 166
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3188 Uncharacterized conser 100.0 2E-81 4.3E-86 544.9 12.9 172 45-216 1-172 (246)
2 PF01956 DUF106: Integral memb 100.0 2.7E-43 5.9E-48 288.4 10.3 145 48-216 1-148 (168)
3 KOG3312 Predicted membrane pro 91.1 0.24 5.2E-06 42.8 3.4 54 156-210 88-143 (186)
4 TIGR02976 phageshock_pspB phag 63.4 25 0.00055 26.5 5.6 47 59-105 6-55 (75)
5 PF06667 PspB: Phage shock pro 51.3 50 0.0011 25.0 5.4 47 58-105 5-55 (75)
6 PF12606 RELT: Tumour necrosis 51.0 14 0.00031 26.1 2.3 16 59-74 5-20 (50)
7 PRK09458 pspB phage shock prot 43.3 53 0.0012 25.1 4.5 47 58-105 5-55 (75)
8 PF11241 DUF3043: Protein of u 39.0 28 0.0006 30.2 2.7 19 55-73 67-94 (170)
9 PRK01844 hypothetical protein; 33.4 82 0.0018 24.0 4.1 36 58-93 4-45 (72)
10 COG0504 PyrG CTP synthase (UTP 32.9 15 0.00032 37.0 0.0 13 31-43 451-463 (533)
11 PF07297 DPM2: Dolichol phosph 31.5 67 0.0015 24.6 3.4 28 56-83 44-72 (78)
12 COG3197 FixS Uncharacterized p 31.5 43 0.00093 24.6 2.2 15 59-73 6-20 (58)
13 PF03814 KdpA: Potassium-trans 31.4 1.3E+02 0.0029 30.5 6.4 49 112-168 214-262 (552)
14 PF12273 RCR: Chitin synthesis 25.3 50 0.0011 26.3 1.9 19 58-76 2-23 (130)
15 TIGR00680 kdpA K+-transporting 24.6 91 0.002 31.8 3.9 16 57-72 179-194 (563)
16 PRK01110 rpmF 50S ribosomal pr 23.4 29 0.00064 25.0 0.2 34 25-59 4-37 (60)
17 PF03597 CcoS: Cytochrome oxid 23.2 81 0.0018 21.7 2.3 16 58-73 4-19 (45)
18 COG1422 Predicted membrane pro 21.3 1.2E+02 0.0025 27.2 3.5 33 154-186 116-152 (201)
19 COG3079 Uncharacterized protei 21.1 52 0.0011 29.0 1.3 16 168-183 101-116 (186)
20 PRK00523 hypothetical protein; 20.8 2E+02 0.0043 22.0 4.2 33 61-93 8-46 (72)
No 1
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-81 Score=544.91 Aligned_cols=172 Identities=56% Similarity=0.940 Sum_probs=162.6
Q ss_pred chhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 027971 45 MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC 124 (216)
Q Consensus 45 m~~~LlLDp~IR~WVllPI~ivm~LvGiLRhyvt~Ll~s~k~~~~~~vre~q~L~Ra~~LR~n~~~L~~~sF~~Rk~yf~ 124 (216)
|+.+|+|||+||+||||||+|||||+|||||||++|+++.|+.+.++|+|+|+|+||++||+||++||++||++||+|||
T Consensus 1 Mtp~LLLD~aiR~WVlLPI~ivm~liGilRhyvsiLl~s~kk~~~~~v~e~q~l~rAr~Lr~ng~~l~~~Sf~aRk~yl~ 80 (246)
T KOG3188|consen 1 MTPDLLLDPAIRYWVLLPIVIVMFLIGILRHYVSILLQSSKKLEQEQVKEGQYLIRARLLRENGNFLPPQSFAARKEYLN 80 (246)
T ss_pred CchhhccChHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCCCcchhhhcCCCChhHHHHHHHHhhhhhhhHHHHHHHHHHhhhcceeeeccCCCchhhHHHHhcCCCCC
Q 027971 125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS 204 (216)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~npmtDP~~Mm~MmKgNm~~~iPq~vim~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~ 204 (216)
++|+|++.+.+.+..+++++|++||+||||||||||.|+|||++|||||||||||||++|+|||||.|||+|||+||++.
T Consensus 81 ~~e~g~l~~~k~~~~~~~~~~~~DpsmlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~ 160 (246)
T KOG3188|consen 81 NEETGYLKKAKQQAAGEAPPPFNDPSMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQ 160 (246)
T ss_pred cccccccccccccccCCCCCCCCCHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhh
Confidence 99999444444444445568899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCC
Q 027971 205 TVDVSYVSSRSW 216 (216)
Q Consensus 205 dLDvswVSSlSW 216 (216)
||||+||||+||
T Consensus 161 ~LDv~wVSS~SW 172 (246)
T KOG3188|consen 161 DLDVSWVSSASW 172 (246)
T ss_pred hcchhHhhhhHH
Confidence 999999999999
No 2
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=100.00 E-value=2.7e-43 Score=288.36 Aligned_cols=145 Identities=46% Similarity=0.805 Sum_probs=137.3
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHhhcCC---CCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 027971 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS---QVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC 124 (216)
Q Consensus 48 ~LlLDp~IR~WVllPI~ivm~LvGiLRhyvt~Ll~s~---k~~~~~~vre~q~L~Ra~~LR~n~~~L~~~sF~~Rk~yf~ 124 (216)
|++|||.|| ||++||+++++++|++|||++.+++.. ++.+..+.+++++..|++.+++|++.+++++|+.|+++++
T Consensus 1 d~~ldp~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF01956_consen 1 DLVLDPLIR-WVLLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELM 79 (168)
T ss_pred CccccchHh-hhhcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 689999999 999999999999999999999999993 4467889999999999999999999999999999999998
Q ss_pred hcCCcccccCCCCcchhhhcCCCChhHHHHHHHHhhhhhhhHHHHHHHHHHhhhcceeeeccCCCchhhHHHHhcCCCCC
Q 027971 125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS 204 (216)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~npmtDP~~Mm~MmKgNm~~~iPq~vim~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~ 204 (216)
+++.| +|++|||+|+.++||+++||+|||+||+||+++|+|||||.+||.|+|||+ +
T Consensus 80 ~~~~~---------------------~~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl--~ 136 (168)
T PF01956_consen 80 EKQQE---------------------MMMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGL--E 136 (168)
T ss_pred HHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCC--C
Confidence 75444 188999999999999999999999999999999999999999999999999 9
Q ss_pred CCCccccccCCC
Q 027971 205 TVDVSYVSSRSW 216 (216)
Q Consensus 205 dLDvswVSSlSW 216 (216)
++|++||||+||
T Consensus 137 ~~d~~~~s~i~w 148 (168)
T PF01956_consen 137 GLDVSYVSSISW 148 (168)
T ss_pred CCcccHhHHHHH
Confidence 999999999998
No 3
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=91.05 E-value=0.24 Score=42.80 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=38.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHhhhcceeeeccC-CCchhhHHHHhcCCCCCCC-Cccc
Q 027971 156 MKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF-PLTQRFRSMLQNGIDLSTV-DVSY 210 (216)
Q Consensus 156 mKgNm~~~iPq~vim~WIN~FFSGFVv~KlPF-PLT~rFK~MLQrGI~l~dL-Dvsw 210 (216)
||.-.+--+--+++++-.|..|-|=|++|+|| |++. -..|--||+--.|. |+|+
T Consensus 88 mKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~-iqglSHRnL~GdD~TDCSf 143 (186)
T KOG3312|consen 88 MKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISI-IQGLSHRNLKGDDMTDCSF 143 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHH-HhcccccCCCCCCccchHH
Confidence 44444445556888999999999999999999 7775 34555566654443 6654
No 4
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=63.41 E-value=25 Score=26.55 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHhhcCCCCCChhhhhhhhHHHHHHHHh
Q 027971 59 VLIPLSVVMVLIGI---LRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLR 105 (216)
Q Consensus 59 VllPI~ivm~LvGi---LRhyvt~Ll~s~k~~~~~~vre~q~L~Ra~~LR 105 (216)
+++|+++++++|+. +-||.+.=-.+..-.+-++-+=++...+|+.|.
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~ 55 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLE 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47899988877764 569987644442222222222355566676665
No 5
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=51.34 E-value=50 Score=25.03 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHH---HHHHHHhhcCCCCCChhhh-hhhhHHHHHHHHh
Q 027971 58 WVLIPLSVVMVLIGIL---RYFVSKLMRSSQVPDPKIV-KEGQVIVRARNLR 105 (216)
Q Consensus 58 WVllPI~ivm~LvGiL---Rhyvt~Ll~s~k~~~~~~v-re~q~L~Ra~~LR 105 (216)
....|++|.+++|+.+ =||.+.- ++.+..+.+.. +=++...+|+.+.
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk~-~~~~gLs~~d~~~L~~L~~~a~rm~ 55 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSKW-KSSQGLSEEDEQRLQELYEQAERME 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567888888888765 6999874 33333333322 2355566677665
No 6
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=50.96 E-value=14 Score=26.05 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 027971 59 VLIPLSVVMVLIGILR 74 (216)
Q Consensus 59 VllPI~ivm~LvGiLR 74 (216)
+++||++||++.|++=
T Consensus 5 ~iV~i~iv~~lLg~~I 20 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSI 20 (50)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999999763
No 7
>PRK09458 pspB phage shock protein B; Provisional
Probab=43.26 E-value=53 Score=25.13 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHH---HHHHHHhhcCCCCCCh-hhhhhhhHHHHHHHHh
Q 027971 58 WVLIPLSVVMVLIGIL---RYFVSKLMRSSQVPDP-KIVKEGQVIVRARNLR 105 (216)
Q Consensus 58 WVllPI~ivm~LvGiL---Rhyvt~Ll~s~k~~~~-~~vre~q~L~Ra~~LR 105 (216)
...+|++|.|++|+-+ =||.+.=-.+ +..+. +.-+=++...+|+.++
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~~~~-~~Ls~~d~~~L~~L~~~A~rm~ 55 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKRQGS-QGLSQEEQQRLAQLTEKAERMR 55 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999855 4998743333 22222 2233355667777765
No 8
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=39.02 E-value=28 Score=30.15 Aligned_cols=19 Identities=26% Similarity=0.922 Sum_probs=16.5
Q ss_pred cccch---------HHHHHHHHHHHHHH
Q 027971 55 IRDWV---------LIPLSVVMVLIGIL 73 (216)
Q Consensus 55 IR~WV---------llPI~ivm~LvGiL 73 (216)
+|||| ++|+.+++++++++
T Consensus 67 vRD~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 67 VRDYVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 78886 89999999988887
No 9
>PRK01844 hypothetical protein; Provisional
Probab=33.43 E-value=82 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHH------HHHHHHHhhcCCCCCChhhhh
Q 027971 58 WVLIPLSVVMVLIGI------LRYFVSKLMRSSQVPDPKIVK 93 (216)
Q Consensus 58 WVllPI~ivm~LvGi------LRhyvt~Ll~s~k~~~~~~vr 93 (216)
|+.+=|.|+.+++|+ -|.|....+...++.+-+.+|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir 45 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLK 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 444445556666664 477888888776666655554
No 10
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=32.94 E-value=15 Score=36.97 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=9.0
Q ss_pred cCcchhhhhhhhh
Q 027971 31 KSSTHRHRHRYRA 43 (216)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (216)
..-.-||||||.-
T Consensus 451 ~~v~ERHRHRYEv 463 (533)
T COG0504 451 DEIYERHRHRYEV 463 (533)
T ss_pred Ceeeeeccchhhc
Confidence 3445689999863
No 11
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=31.52 E-value=67 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.478 Sum_probs=23.9
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 027971 56 RDW-VLIPLSVVMVLIGILRYFVSKLMRS 83 (216)
Q Consensus 56 R~W-VllPI~ivm~LvGiLRhyvt~Ll~s 83 (216)
|.| +.+|+++.+++++.+=-+++.++-.
T Consensus 44 r~yAi~lP~~lll~~~~~vg~f~g~vmik 72 (78)
T PF07297_consen 44 REYAIILPIFLLLLGLSGVGTFLGYVMIK 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678 7999999999999999888877644
No 12
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=31.49 E-value=43 Score=24.59 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHH
Q 027971 59 VLIPLSVVMVLIGIL 73 (216)
Q Consensus 59 VllPI~ivm~LvGiL 73 (216)
.++|++|++++||+.
T Consensus 6 ~Lipvsi~l~~v~l~ 20 (58)
T COG3197 6 ILIPVSILLGAVGLG 20 (58)
T ss_pred eHHHHHHHHHHHHHH
Confidence 589999999999975
No 13
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=31.41 E-value=1.3e+02 Score=30.52 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhhcCCcccccCCCCcchhhhcCCCChhHHHHHHHHhhhhhhhHHH
Q 027971 112 SPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTL 168 (216)
Q Consensus 112 ~~~sF~~Rk~yf~~~~~G~~~~~~~~~~~~~~npmtDP~~Mm~MmKgNm~~~iPq~v 168 (216)
|-+|+++=|+. -..-.|.|-+ ++ +-|+.||+..+++.--=...+||.-+
T Consensus 214 PvAs~eaIK~L-GTNGGGff~a-----NS--AhPfENPt~~sN~~e~~~illIP~al 262 (552)
T PF03814_consen 214 PVASQEAIKQL-GTNGGGFFGA-----NS--AHPFENPTPLSNFLEMLSILLIPAAL 262 (552)
T ss_pred ccHHHHHHHHh-ccCCCcccCC-----CC--CCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 66888887654 3335554432 11 25778887765444433344455443
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.27 E-value=50 Score=26.25 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=9.0
Q ss_pred chHHHHHHHH---HHHHHHHHH
Q 027971 58 WVLIPLSVVM---VLIGILRYF 76 (216)
Q Consensus 58 WVllPI~ivm---~LvGiLRhy 76 (216)
|||+=|+|+. +|+++++|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 6655444443 444444443
No 15
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=24.56 E-value=91 Score=31.77 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHHHH
Q 027971 57 DWVLIPLSVVMVLIGI 72 (216)
Q Consensus 57 ~WVllPI~ivm~LvGi 72 (216)
.||||||++|.-++=+
T Consensus 179 l~vLLPlS~i~Al~lv 194 (563)
T TIGR00680 179 LRILLPISLVGAILLL 194 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999998766543
No 16
>PRK01110 rpmF 50S ribosomal protein L32; Validated
Probab=23.45 E-value=29 Score=24.99 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred hhhhcccCcchhhhhhhhhcchhhhhcccccccch
Q 027971 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTAIRDWV 59 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~IR~WV 59 (216)
.|||.||+.++..|--+..... .+..||+--.+.
T Consensus 4 PKrK~Sksr~~~RRa~~~~~~~-~~~~c~~cg~~~ 37 (60)
T PRK01110 4 PKRKTSKSKRRMRRSHWKLTAP-TLSVDKTTGEYH 37 (60)
T ss_pred CcCccchhhchhhhhhhhccCC-ceeEcCCCCcee
Confidence 4788899888777666655544 688888766554
No 17
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.18 E-value=81 Score=21.67 Aligned_cols=16 Identities=38% Similarity=0.860 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHH
Q 027971 58 WVLIPLSVVMVLIGIL 73 (216)
Q Consensus 58 WVllPI~ivm~LvGiL 73 (216)
.+++|+++++.++++.
T Consensus 4 ~~lip~sl~l~~~~l~ 19 (45)
T PF03597_consen 4 YILIPVSLILGLIALA 19 (45)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4789999999988865
No 18
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=1.2e+02 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=21.3
Q ss_pred HHHHHhh----hhhhhHHHHHHHHHHhhhcceeeecc
Q 027971 154 DMMKKNL----SMIIPQTLTFAWVNFFFSGFVAAKIP 186 (216)
Q Consensus 154 ~MmKgNm----~~~iPq~vim~WIN~FFSGFVv~KlP 186 (216)
+|||.++ .-+++.+.+.+|.-++-++==..+-|
T Consensus 116 elmk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~ 152 (201)
T COG1422 116 ELMKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSE 152 (201)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccC
Confidence 4555554 34557788889999887765444333
No 19
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=52 Score=29.02 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhcceee
Q 027971 168 LTFAWVNFFFSGFVAA 183 (216)
Q Consensus 168 vim~WIN~FFSGFVv~ 183 (216)
....|+|+|.+||=++
T Consensus 101 AL~eW~nhFL~GlGL~ 116 (186)
T COG3079 101 ALAEWCNHFLLGLGLT 116 (186)
T ss_pred HHHHHHHHHHHhhccc
Confidence 3579999999999543
No 20
>PRK00523 hypothetical protein; Provisional
Probab=20.81 E-value=2e+02 Score=21.96 Aligned_cols=33 Identities=12% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH------HHHHHHHhhcCCCCCChhhhh
Q 027971 61 IPLSVVMVLIGI------LRYFVSKLMRSSQVPDPKIVK 93 (216)
Q Consensus 61 lPI~ivm~LvGi------LRhyvt~Ll~s~k~~~~~~vr 93 (216)
+=|.|+.+++|+ -|.|....+...++.+-+.+|
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir 46 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHH
Confidence 333444456664 588888888876666656555
Done!