Query 027971
Match_columns 216
No_of_seqs 108 out of 166
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_J Cytochrome C oxidase po 29.2 71 0.0024 23.5 4.3 71 3-86 7-79 (80)
2 1sy9_B Cyclic-nucleotide-gated 21.0 59 0.002 19.3 2.0 13 66-78 10-22 (26)
3 3v2d_5 50S ribosomal protein L 18.6 16 0.00056 25.3 -0.9 29 25-54 7-35 (60)
4 2zjr_Z 50S ribosomal protein L 16.7 25 0.00086 24.4 -0.3 29 25-54 7-35 (60)
5 3r8s_0 50S ribosomal protein L 15.5 21 0.0007 24.4 -1.0 30 25-54 3-32 (56)
6 1v54_J Cytochrome C oxidase po 13.5 2E+02 0.0068 19.8 3.6 31 56-86 27-58 (59)
7 3tx3_A Uncharacterized protein 13.3 95 0.0033 26.5 2.3 35 48-82 22-60 (249)
8 2hfr_A Fowlicidin-3, cathelici 12.3 56 0.0019 19.6 0.4 17 56-72 2-18 (27)
9 3ain_A 303AA long hypothetical 9.4 66 0.0022 26.7 0.0 28 32-59 3-30 (323)
10 2bf9_A Pancreatic hormone; tur 8.2 1.5E+02 0.0052 19.0 1.3 13 70-82 21-33 (36)
No 1
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=29.18 E-value=71 Score=23.46 Aligned_cols=71 Identities=20% Similarity=0.123 Sum_probs=35.9
Q ss_pred hhhhhcccccccC-CCCCCChhhhhhhcccCcchhhhhhhhhcchhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhh
Q 027971 3 SQLYDKTLSFRTP-FTPNQKPHKQKRKKSKSSTHRHRHRYRASMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLM 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~IR~WVllPI~ivm~LvGiLRhyvt~Ll 81 (216)
+|+--.++|=-++ +-+|.-|++||-=..+. .-.+.|-----||+|.+++....++|+.-.-.....
T Consensus 7 ~~~~~r~~st~~~r~~~NkVpe~Qk~FQ~~~-------------g~PV~lKggrsd~~Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 7 SQALVRSFSSTARNRFENRVAEKQKLFQEDN-------------GLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp ---------------CCCCHHHHHHHHTCSS-------------CCCGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhccccHHHHHHhcCCC-------------CceeeeecCccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444 56777788887533311 113444444447899999999999998876555555
Q ss_pred cC-CCC
Q 027971 82 RS-SQV 86 (216)
Q Consensus 82 ~s-~k~ 86 (216)
.+ |||
T Consensus 74 ~~~pkk 79 (80)
T 2y69_J 74 ASFPHK 79 (80)
T ss_dssp HTSCC-
T ss_pred HHcCCC
Confidence 55 443
No 2
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=21.02 E-value=59 Score=19.33 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 027971 66 VMVLIGILRYFVS 78 (216)
Q Consensus 66 vm~LvGiLRhyvt 78 (216)
|.=|||+||+.+.
T Consensus 10 i~rlvgv~r~wa~ 22 (26)
T 1sy9_B 10 IARLVGVLREWAY 22 (26)
T ss_pred HHHHHHHHHHHHH
Confidence 4568999998764
No 3
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=18.65 E-value=16 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=18.6
Q ss_pred hhhhcccCcchhhhhhhhhcchhhhhcccc
Q 027971 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~ 54 (216)
+|||.|+|.++..|--+... +..|..||+
T Consensus 7 PKrK~Sksr~~~RRsh~kl~-~p~l~~c~~ 35 (60)
T 3v2d_5 7 PKKKTSKARRDARRSHHALT-PPTLVPCPE 35 (60)
T ss_dssp CSSCCCHHHHHHHGGGCCCC-CCCCEECTT
T ss_pred CcCcCChhhcchhhcccccc-CCceeECCC
Confidence 46777877776555445554 347777775
No 4
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=16.68 E-value=25 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=18.8
Q ss_pred hhhhcccCcchhhhhhhhhcchhhhhcccc
Q 027971 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~ 54 (216)
+|||.|+|.++..|--+.. -+..|.-||+
T Consensus 7 PKrK~Sksrr~~RRsh~kl-~~p~l~~c~~ 35 (60)
T 2zjr_Z 7 PKKKTSKSKRDMRRSHHAL-TAPNLTECPQ 35 (60)
T ss_dssp CSSCCCTTHHHHHTTTCCC-CCCCCEECTT
T ss_pred CCCCCChHHhhhhcccccc-cCCCceECCC
Confidence 4788888877765554544 3447777765
No 5
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=15.53 E-value=21 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=17.8
Q ss_pred hhhhcccCcchhhhhhhhhcchhhhhcccc
Q 027971 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~ 54 (216)
+|||.|+|.++..|--+.......|.-||+
T Consensus 3 PKrK~Sksrr~~RRsh~kl~~~p~l~~c~~ 32 (56)
T 3r8s_0 3 QQNKPTRSKRGMRRSHDALTAVTSLSVDKT 32 (56)
T ss_dssp CSSCCCHHHHHHHGGGCCCCCCCCEEECTT
T ss_pred CCCcCChhhhhhhhchhhcccCCceeECCC
Confidence 367777776665554455444246777765
No 6
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=13.51 E-value=2e+02 Score=19.77 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcC-CCC
Q 027971 56 RDWVLIPLSVVMVLIGILRYFVSKLMRS-SQV 86 (216)
Q Consensus 56 R~WVllPI~ivm~LvGiLRhyvt~Ll~s-~k~ 86 (216)
-|++|.+++....++|+.-.-......+ ||+
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~~~pkk 58 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWASFPHK 58 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3778889999988889887655555555 443
No 7
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=13.35 E-value=95 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=25.1
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHH----HHHHHhhc
Q 027971 48 DLVLDTAIRDWVLIPLSVVMVLIGILR----YFVSKLMR 82 (216)
Q Consensus 48 ~LlLDp~IR~WVllPI~ivm~LvGiLR----hyvt~Ll~ 82 (216)
.++.||.+|-.|++|+.+-.++.+.+- +++...+.
T Consensus 22 ~~i~~p~lr~~vl~Pllinl~L~~~~~~~~~~~~~~~i~ 60 (249)
T 3tx3_A 22 ELIRTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWLN 60 (249)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999998887766554 44444443
No 8
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=12.33 E-value=56 Score=19.63 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=14.4
Q ss_pred ccchHHHHHHHHHHHHH
Q 027971 56 RDWVLIPLSVVMVLIGI 72 (216)
Q Consensus 56 R~WVllPI~ivm~LvGi 72 (216)
|.|-+.|..|.++..||
T Consensus 2 RF~P~vpvaintvaagi 18 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGI 18 (27)
T ss_dssp CSCSSSSSHHHHHHHHH
T ss_pred CccccCcceEEEeehhh
Confidence 67889999988888885
No 9
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Probab=9.44 E-value=66 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=0.0
Q ss_pred Ccchhhhhhhhhcchhhhhcccccccch
Q 027971 32 SSTHRHRHRYRASMAEDLVLDTAIRDWV 59 (216)
Q Consensus 32 ~~~~~~~~~~~~~m~~~LlLDp~IR~WV 59 (216)
||.|.|.|-----+.....|||+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (323)
T 3ain_A 3 SSHHHHHHSSGLVPRGSHMIDPKIKKLL 30 (323)
T ss_dssp ----------------------------
T ss_pred ccccccccccCCCCCCCCCCCHHHHHHH
Confidence 4556565554444444557999999886
No 10
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=8.21 E-value=1.5e+02 Score=18.98 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhc
Q 027971 70 IGILRYFVSKLMR 82 (216)
Q Consensus 70 vGiLRhyvt~Ll~ 82 (216)
..-||||+..+-+
T Consensus 21 ~~~LrhYiNlvTR 33 (36)
T 2bf9_A 21 YNDLQQYLNVVTR 33 (36)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 3468999987643
Done!