Query 027971
Match_columns 216
No_of_seqs 108 out of 166
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 06:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 35.6 9 0.00065 26.5 2.2 14 57-70 74-87 (100)
2 d1s1ma1 c.23.16.1 (A:287-544) 30.9 4 0.00029 33.9 -0.6 9 34-42 178-186 (258)
3 d1jk0a_ a.25.1.2 (A:) Ribonucl 28.4 4.5 0.00033 33.7 -0.6 32 33-64 36-67 (334)
4 d1vcoa1 c.23.16.1 (A:298-547) 28.0 4.7 0.00034 33.2 -0.6 10 33-42 168-177 (250)
5 d1jb0i_ f.23.17.1 (I:) Subunit 15.7 63 0.0046 19.3 3.0 21 57-77 11-34 (38)
6 d1n1ba1 a.102.4.1 (A:64-270) ( 12.3 49 0.0036 25.9 2.2 32 97-132 90-121 (207)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.3 49 0.0036 22.8 1.7 14 57-70 80-93 (107)
8 d2cqna1 a.159.2.1 (A:743-806) 10.8 59 0.0043 21.5 1.9 20 191-210 6-25 (64)
9 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 10.7 25 0.0018 22.7 -0.1 29 25-54 6-34 (58)
10 d1jk0b_ a.25.1.2 (B:) Ribonucl 10.6 21 0.0015 28.3 -0.6 27 37-63 4-30 (285)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=35.61 E-value=9 Score=26.47 Aligned_cols=14 Identities=14% Similarity=0.812 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHH
Q 027971 57 DWVLIPLSVVMVLI 70 (216)
Q Consensus 57 ~WVllPI~ivm~Lv 70 (216)
.|.++|++|++++.
T Consensus 74 iWTviP~lILi~l~ 87 (100)
T d3dtub2 74 AWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999888764
No 2
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.86 E-value=4 Score=33.86 Aligned_cols=9 Identities=67% Similarity=1.283 Sum_probs=6.8
Q ss_pred chhhhhhhh
Q 027971 34 THRHRHRYR 42 (216)
Q Consensus 34 ~~~~~~~~~ 42 (216)
.-||||||.
T Consensus 178 ~ERHRHRYe 186 (258)
T d1s1ma1 178 VERHRHRYE 186 (258)
T ss_dssp EEEEEECCE
T ss_pred hhhhhcchh
Confidence 367999985
No 3
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=28.44 E-value=4.5 Score=33.74 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=24.9
Q ss_pred cchhhhhhhhhcchhhhhcccccccchHHHHH
Q 027971 33 STHRHRHRYRASMAEDLVLDTAIRDWVLIPLS 64 (216)
Q Consensus 33 ~~~~~~~~~~~~m~~~LlLDp~IR~WVllPI~ 64 (216)
..|-|||+.++.-.++.+|-.+=.-||++||=
T Consensus 36 ~~~~~~~~~~~~~~~e~~l~~~~~r~~~~Pik 67 (334)
T d1jk0a_ 36 SHQVHRHKLKEMEKEEPLLNEDKERTVLFPIK 67 (334)
T ss_dssp HCHHHHHHHHHHGGGCGGGSCCTTCCSCCSCS
T ss_pred hhhhhHHHhHhhhcCCcccCCCCCceeEeCCc
Confidence 45667888888777787888888888999984
No 4
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=27.98 E-value=4.7 Score=33.20 Aligned_cols=10 Identities=60% Similarity=1.079 Sum_probs=7.6
Q ss_pred cchhhhhhhh
Q 027971 33 STHRHRHRYR 42 (216)
Q Consensus 33 ~~~~~~~~~~ 42 (216)
-.-||||||.
T Consensus 168 i~ERhRHRYe 177 (250)
T d1vcoa1 168 VLERHRHRYE 177 (250)
T ss_dssp EEEEEEESEE
T ss_pred Eeehccccee
Confidence 4468999986
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.70 E-value=63 Score=19.35 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=14.2
Q ss_pred cchHHHHHHH---HHHHHHHHHHH
Q 027971 57 DWVLIPLSVV---MVLIGILRYFV 77 (216)
Q Consensus 57 ~WVllPI~iv---m~LvGiLRhyv 77 (216)
-|+++|++-. .+.+|+|=-|+
T Consensus 11 PwI~iPvv~wl~p~vvMglLFiyI 34 (38)
T d1jb0i_ 11 PWIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHheee
Confidence 5999998743 34567776665
No 6
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=12.27 E-value=49 Score=25.93 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCcccc
Q 027971 97 VIVRARNLRAGANFISPKSFRARRVYFCNEENGLLH 132 (216)
Q Consensus 97 ~L~Ra~~LR~n~~~L~~~sF~~Rk~yf~~~~~G~~~ 132 (216)
+..+-|+||.+|-.+|++-|.. |.+.++|.|.
T Consensus 90 ~AL~FRLLRqhGy~VS~dvF~~----F~d~~g~~fk 121 (207)
T d1n1ba1 90 TALGFRLLRQHGFNISQDVFNC----FKNEKGIDFK 121 (207)
T ss_dssp HHHHHHHHHHTTCCCCGGGGGG----GBCTTSSSBC
T ss_pred HHHHHHHHHHcCCCCCHHHHHH----hccCCCCchh
Confidence 4578899999999999999975 5553333554
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.32 E-value=49 Score=22.81 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.6
Q ss_pred cchHHHHHHHHHHH
Q 027971 57 DWVLIPLSVVMVLI 70 (216)
Q Consensus 57 ~WVllPI~ivm~Lv 70 (216)
.|.++|++|++++.
T Consensus 80 ~WTviP~lIL~~la 93 (107)
T d3ehbb2 80 IWTLVPVLILVAIG 93 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 69999988887764
No 8
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.81 E-value=59 Score=21.54 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=14.5
Q ss_pred hhhHHHHhcCCCCCCCCccc
Q 027971 191 QRFRSMLQNGIDLSTVDVSY 210 (216)
Q Consensus 191 ~rFK~MLQrGI~l~dLDvsw 210 (216)
..||.||-.-...-+.+.+|
T Consensus 6 ~aFknmLk~~~Ppi~~~s~W 25 (64)
T d2cqna1 6 SAFKSMLKQAAPPIELDAVW 25 (64)
T ss_dssp HHHHHHHHTCSSCCCTTCCH
T ss_pred HHHHHHHHHcCCCCCCcCcH
Confidence 46999997776655666666
No 9
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.69 E-value=25 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=18.1
Q ss_pred hhhhcccCcchhhhhhhhhcchhhhhcccc
Q 027971 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~m~~~LlLDp~ 54 (216)
.|||.|+|.++..|--|..... .|.-||+
T Consensus 6 PKrk~SksRr~~RRsh~~l~~p-~l~~C~~ 34 (58)
T d2zjrz1 6 PKKKTSKSKRDMRRSHHALTAP-NLTECPQ 34 (58)
T ss_dssp CSSCCCTTHHHHHTTTCCCCCC-CCEECTT
T ss_pred CCCccCcccchhhhhhhhhcCC-ceeECCC
Confidence 3677788777666655655444 5666665
No 10
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Probab=10.63 E-value=21 Score=28.34 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=15.6
Q ss_pred hhhhhhhcchhhhhcccccccchHHHH
Q 027971 37 HRHRYRASMAEDLVLDTAIRDWVLIPL 63 (216)
Q Consensus 37 ~~~~~~~~m~~~LlLDp~IR~WVllPI 63 (216)
|||+-.+.-..|++|...=.-||++||
T Consensus 4 ~~~~~~~~~~~e~~l~e~~~r~~l~Pi 30 (285)
T d1jk0b_ 4 ERHDMKEAEKDEILLMENSRRFVMFPI 30 (285)
T ss_dssp HHHHHHHHTTTCTTTSCCTTCCSCCSC
T ss_pred hHHHHHhhccCCCccCCCCCceeeeCC
Confidence 344444444346666666666777776
Done!