BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027972
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 31/171 (18%)
Query: 67 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN 126
S+ + A ++ + ++I+ I D+PKPGI+F+D+T+LL D KA+ +IDL VERYK+
Sbjct: 4 GSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAG 63
Query: 127 ISVVAG-------------------------------EVISEEYSLEYGKDVMEMHVGAV 155
I+ V G E ISE Y LEYG D +E+HV A+
Sbjct: 64 ITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAI 123
Query: 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
+ G++ L+VDDL+ATGGT+ A ++L+ R+G V + A +I L +L G +RL
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 174
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 34/175 (19%)
Query: 75 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVA 131
D + + IR PDFP PG++F+DI+ +L D +FR I L K + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 132 G-------------------------------EVISEEYSLEYGKDVMEMHVGAVQAGER 160
G + YSLEYGK +E+ A++ G+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 161 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 215
++VDDL+ATGGT++AA LL R+ V+EC ++EL LKGRE+L P F L+
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLL 177
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 36/168 (21%)
Query: 84 AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAG------- 132
A+ P+FP GI+F+D + + F+ ID F E + + I + G
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFL 72
Query: 133 ------------------------EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 168
E Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 73 FGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
Query: 169 ATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 216
ATGG+ +AA L+E++ +++E V+EL LKGR +L P+F L++
Sbjct: 133 ATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLN-APVFTLLN 179
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 78 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAG----- 132
+A + I+ IPDFP GI F+D++ +L A YKD I+ V G
Sbjct: 5 VADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRG 64
Query: 133 --------------------------EVISEEYSLEYGKDV-MEMHVGAVQAGERALIVD 165
+V + +EY K V +E+ + + L+ D
Sbjct: 65 FILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHD 124
Query: 166 DLVATGGTLSAAIRLLERVGV--HVVECACVIELPELKGRERLGEK 209
D++ATGGTL AAI L E GV + + E+ LKGRE++G+K
Sbjct: 125 DVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQK 170
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 43 QNYRIALP-------PLHSTVSGDSTQPQQM-ASADVKAQDPRIAGISSAIRVIPDFPKP 94
+NYR P P + VS + P+ + A D + R +S A I F
Sbjct: 25 KNYRWYSPIFSPRNVPRFADVSSITESPETLKAIRDFLVE--RYRTMSPAPTHILGFDAR 82
Query: 95 GIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGEVI-SEEYSLEYGK---DVMEM 150
G +F + + L I + R DKN AG +I SE Y EY + +VM +
Sbjct: 83 GFLFGPMIAVELG-------IPFVLMRKADKN----AGLLIRSEPYEKEYKEAAPEVMTI 131
Query: 151 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
G++ R +++DD++ATGGT + ++L+E G VVE ++ +P LK ER+
Sbjct: 132 RHGSIGKNSRVVLIDDVLATGGTALSGLQLVEASGAEVVEMVSILTIPFLKAAERI 187
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 51 PLHSTVSGDSTQPQQM-ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTK 109
P + VS + P+ + A D Q R +S A I F G +F + + L+
Sbjct: 39 PRFADVSSITESPETLKAIRDFLVQ--RYRAMSPAPTHILGFDARGFLFGPMIAVELE-- 94
Query: 110 AFRDTIDLFVERYKDKNISVVAGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVD 165
I + R DKN AG +I SE Y EY + +VM + G++ G R +++D
Sbjct: 95 -----IPFVLMRKADKN----AGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLID 145
Query: 166 DLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
D++ATGGT + ++L+E VVE ++ +P LK E++
Sbjct: 146 DVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKI 186
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 162 LIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194
IVDD+++TGGT++ A++LL+ G + ACV
Sbjct: 209 FIVDDIISTGGTMATAVKLLKEQGAKKIIAACV 241
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 125 KNISVVAGEVISEEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLE 182
K+ V G +S Y + M + +++ G LI+DD + GGT++ I LL+
Sbjct: 161 KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLD 220
Query: 183 RVGVHVVECACVIE 196
+V ++E
Sbjct: 221 EFNANVAGIGVLVE 234
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 125 KNISVVAGEVISEEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLE 182
K+ V G +S Y + M + +++ G LI+DD + GGT++ I LL+
Sbjct: 161 KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLD 220
Query: 183 RVGVHVVECACVIE 196
+V ++E
Sbjct: 221 EFNANVAGIGVLVE 234
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 161 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199
ALIVD ++ATGG++ A I LL++ G ++ ++ PE
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 164
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196
G + G+R +I+DDLV+TG T AI L G+ VV +++
Sbjct: 360 GEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLVD 403
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 162 LIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199
+IVD ++ATGG+ AAI L++ G ++ C+I PE
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE 165
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 148 MEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194
+EM V V G++ LIVDD+++TGGT++ + LL G + + V
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAV 241
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 148 MEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194
+EM V V G++ LIVDD+++TGGT++ + LL G + + V
Sbjct: 192 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAV 239
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
G + G++ ++V+DL++TGG+ + L G V+ + G+E+L
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKL 185
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI--ELPE 199
G V G++ +I++DL++TGG++ A+ +R G V+ + ELP+
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPK 192
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208
A RA ++D +ATGG+ S A+ LL+ G V+ ++ PE G ER+ +
Sbjct: 122 AERRAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPE--GLERIAK 171
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 151 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 204
G+++ GER L + D V GGT + +R L E C +EL E G+
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKN 80
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
G + GE LI++D+V +G ++ + +L++ G+ V + A V+ E G+++L
Sbjct: 106 GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTD-AIVLLDREQGGKDKL 158
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 204
G+++ GER L + D V GGT + +R L E C +EL E G+
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKN 51
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194
+R +IVDD+ TG TL I ++++G ++ AC+
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACL 119
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 158 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 174
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 158 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 156 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 193
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 157 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195
G+ LIV+D++ TG T+ + L+ + +V+ AC+
Sbjct: 134 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLF 172
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 157 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195
AG+ LIV+D+V TG T+ A + +E+ ++++ A ++
Sbjct: 133 AGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLL 171
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 153 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI--ELPE 199
G V G++ +I++DL++TGG++ A R G V+ + ELP+
Sbjct: 112 GRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTYELPK 160
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 146 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193
+VM + VG ++ G+ A+++DD++ T GT++ A L G V C
Sbjct: 207 EVMNI-VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACC 252
>pdb|1VCH|A Chain A, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|B Chain B, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|C Chain C, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|D Chain D, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|E Chain E, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
Length = 175
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVV 189
+R ++V D+VA+G T+ A +++ R G HVV
Sbjct: 121 QRVVLVSDVVASGETMRAMEKMVLRAGGHVV 151
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 158 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 209
G+ +I+D ++ATGGTL A+R + + V+ I PE G +R+ EK
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPE--GLKRIEEK 170
>pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|D Chain D, Rnap At 3.2ang
pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 265
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 61 TQPQQMASADVKAQDPRIAGISSAIRVI 88
+P+ + S D+K++DP I IS I ++
Sbjct: 104 NEPKMLYSKDIKSEDPSIVPISGDIPIV 131
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
+ LI+DD +A G + ++++ G + VIE GR+ L
Sbjct: 121 DHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDEL 168
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 158 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196
G++ L+V+D TG + A++ L G VV A V++
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVD 152
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206
+ LI+DD +A G + ++++ G + VIE GR+ L
Sbjct: 118 DHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDEL 165
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196
+ LIV+D+VATG TL+ L+ VG + A ++E
Sbjct: 143 KHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVE 180
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 146 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 189
+VM + +G V+ G +I+DD+V T GTL A ++L+ G V
Sbjct: 206 EVMNI-IGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQV 247
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 73 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 129
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 130 VAGEVISEEYSLE 142
A E+SL+
Sbjct: 371 AA------EFSLQ 377
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 73 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 129
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 130 VAGEVISEEYSLE 142
A E+SL+
Sbjct: 371 AA------EFSLQ 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,439,325
Number of Sequences: 62578
Number of extensions: 203967
Number of successful extensions: 856
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 71
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)