Query 027972
Match_columns 216
No_of_seqs 234 out of 1769
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 6.9E-40 1.5E-44 271.0 14.4 143 74-216 4-180 (183)
2 PLN02293 adenine phosphoribosy 100.0 2.7E-30 5.9E-35 218.7 16.7 143 74-216 10-183 (187)
3 COG0503 Apt Adenine/guanine ph 99.9 9.1E-25 2E-29 183.7 14.8 139 77-215 4-175 (179)
4 PRK02304 adenine phosphoribosy 99.9 1.6E-24 3.5E-29 180.2 15.7 139 78-216 3-172 (175)
5 TIGR01090 apt adenine phosphor 99.9 1.1E-24 2.3E-29 180.5 14.3 136 81-216 1-168 (169)
6 PRK12560 adenine phosphoribosy 99.9 2.6E-24 5.7E-29 181.9 14.8 138 77-216 2-175 (187)
7 PRK13810 orotate phosphoribosy 99.9 2.5E-21 5.4E-26 164.1 13.4 126 88-216 31-181 (187)
8 PRK09219 xanthine phosphoribos 99.8 6.6E-20 1.4E-24 155.7 13.8 135 78-216 5-177 (189)
9 TIGR01744 XPRTase xanthine pho 99.8 8.7E-20 1.9E-24 155.1 14.3 134 79-216 6-177 (191)
10 PRK13809 orotate phosphoribosy 99.8 1.4E-19 3.1E-24 155.5 13.8 127 88-216 25-177 (206)
11 PRK09213 pur operon repressor; 99.8 2.9E-19 6.2E-24 159.5 13.5 157 54-215 60-250 (271)
12 TIGR01743 purR_Bsub pur operon 99.8 3.5E-19 7.5E-24 158.7 13.8 157 54-215 58-248 (268)
13 PRK13812 orotate phosphoribosy 99.8 2.2E-18 4.8E-23 144.7 13.7 124 88-216 18-166 (176)
14 TIGR00336 pyrE orotate phospho 99.8 1.6E-18 3.5E-23 144.3 11.9 119 96-216 23-169 (173)
15 PRK05500 bifunctional orotidin 99.8 1.5E-18 3.3E-23 165.2 13.3 126 88-216 302-452 (477)
16 PRK08558 adenine phosphoribosy 99.8 3.1E-18 6.7E-23 150.0 14.0 117 98-216 83-236 (238)
17 COG0461 PyrE Orotate phosphori 99.8 6.3E-18 1.4E-22 145.1 13.8 125 87-215 17-170 (201)
18 PRK13811 orotate phosphoribosy 99.8 7.4E-18 1.6E-22 140.5 12.1 113 97-216 30-163 (170)
19 PRK02277 orotate phosphoribosy 99.8 1.5E-17 3.2E-22 141.8 13.1 122 92-216 49-195 (200)
20 PRK00455 pyrE orotate phosphor 99.7 9.6E-17 2.1E-21 136.4 12.9 116 97-216 33-172 (202)
21 TIGR01367 pyrE_Therm orotate p 99.7 2.5E-16 5.5E-21 133.2 13.7 122 88-216 14-161 (187)
22 PRK07322 adenine phosphoribosy 99.7 2.7E-16 5.9E-21 131.7 13.1 118 81-199 8-161 (178)
23 PRK06031 phosphoribosyltransfe 99.7 7.8E-16 1.7E-20 134.7 11.1 120 81-207 42-202 (233)
24 COG0856 Orotate phosphoribosyl 99.5 3.3E-13 7.2E-18 113.9 11.2 121 93-216 50-196 (203)
25 PF00156 Pribosyltran: Phospho 99.3 6.7E-12 1.5E-16 96.7 9.4 93 103-195 2-125 (125)
26 TIGR01203 HGPRTase hypoxanthin 99.0 7.8E-09 1.7E-13 85.9 11.0 45 155-199 81-125 (166)
27 PRK07199 phosphoribosylpyropho 98.9 4.8E-09 1E-13 95.0 10.0 59 154-212 207-265 (301)
28 PRK09177 xanthine-guanine phos 98.9 1.3E-08 2.8E-13 84.0 10.5 90 104-199 8-120 (156)
29 PRK09162 hypoxanthine-guanine 98.9 1.5E-08 3.2E-13 85.2 10.9 45 155-199 94-138 (181)
30 PRK00934 ribose-phosphate pyro 98.9 8.9E-09 1.9E-13 92.3 9.5 56 156-211 202-257 (285)
31 PLN02238 hypoxanthine phosphor 98.8 5.2E-08 1.1E-12 82.7 11.3 45 155-199 94-138 (189)
32 PRK15423 hypoxanthine phosphor 98.8 1E-07 2.2E-12 80.4 11.9 45 155-199 89-133 (178)
33 PRK02269 ribose-phosphate pyro 98.8 7.9E-09 1.7E-13 94.3 5.0 57 156-212 215-271 (320)
34 PLN02297 ribose-phosphate pyro 98.8 3.1E-08 6.6E-13 90.9 8.9 64 144-207 216-279 (326)
35 PRK04923 ribose-phosphate pyro 98.7 4.9E-08 1.1E-12 89.2 9.7 57 156-212 215-271 (319)
36 TIGR00201 comF comF family pro 98.7 1.6E-08 3.4E-13 85.2 5.7 40 156-195 150-189 (190)
37 PRK05205 bifunctional pyrimidi 98.7 1.4E-07 3.1E-12 78.7 11.2 43 156-198 93-136 (176)
38 COG0462 PrsA Phosphoribosylpyr 98.7 5.3E-08 1.1E-12 88.9 8.9 53 156-208 212-264 (314)
39 COG0634 Hpt Hypoxanthine-guani 98.7 1.8E-07 3.9E-12 79.1 11.4 54 146-199 79-134 (178)
40 PRK01259 ribose-phosphate pyro 98.7 1.4E-07 3.1E-12 85.7 9.9 53 156-208 206-258 (309)
41 COG1040 ComFC Predicted amidop 98.6 1E-07 2.2E-12 83.1 8.3 38 159-196 185-222 (225)
42 PRK02458 ribose-phosphate pyro 98.6 2.4E-08 5.2E-13 91.3 4.5 58 156-213 216-273 (323)
43 PTZ00149 hypoxanthine phosphor 98.6 4E-07 8.7E-12 80.5 11.4 44 156-199 148-191 (241)
44 PRK00553 ribose-phosphate pyro 98.6 5.1E-08 1.1E-12 89.5 5.8 52 156-207 216-267 (332)
45 PF14572 Pribosyl_synth: Phosp 98.6 4.4E-08 9.6E-13 83.4 4.4 59 156-214 81-139 (184)
46 PTZ00271 hypoxanthine-guanine 98.6 7.2E-07 1.6E-11 77.4 11.8 45 155-199 115-159 (211)
47 PRK03092 ribose-phosphate pyro 98.6 5.8E-08 1.3E-12 88.1 4.8 53 156-208 199-251 (304)
48 PTZ00145 phosphoribosylpyropho 98.6 6.2E-08 1.4E-12 92.0 5.1 58 156-213 333-390 (439)
49 PRK11595 DNA utilization prote 98.5 1.5E-07 3.3E-12 81.5 5.9 41 156-196 185-225 (227)
50 TIGR01251 ribP_PPkin ribose-ph 98.5 6.5E-07 1.4E-11 81.1 9.5 53 156-208 208-260 (308)
51 PLN02369 ribose-phosphate pyro 98.5 1.6E-07 3.5E-12 85.1 5.0 53 156-208 200-252 (302)
52 PRK02812 ribose-phosphate pyro 98.5 1.8E-07 3.9E-12 85.9 4.8 56 156-211 228-283 (330)
53 PRK08525 amidophosphoribosyltr 98.4 2.8E-07 6E-12 87.6 5.4 52 156-207 338-389 (445)
54 PRK06827 phosphoribosylpyropho 98.4 3E-07 6.5E-12 86.1 5.1 52 155-207 261-312 (382)
55 PRK09246 amidophosphoribosyltr 98.4 1.5E-06 3.3E-11 83.7 9.4 40 156-195 356-395 (501)
56 PLN02440 amidophosphoribosyltr 98.4 2.5E-06 5.5E-11 81.8 10.4 40 156-195 338-377 (479)
57 PRK06781 amidophosphoribosyltr 98.4 3.7E-07 8E-12 87.5 4.6 40 155-194 345-384 (471)
58 TIGR01091 upp uracil phosphori 98.3 1.5E-06 3.1E-11 74.7 7.6 50 156-207 120-169 (207)
59 PRK00129 upp uracil phosphorib 98.3 2E-06 4.3E-11 73.9 8.0 50 156-207 122-171 (209)
60 PRK07349 amidophosphoribosyltr 98.3 3.4E-06 7.4E-11 81.5 8.8 39 155-193 374-412 (500)
61 PRK09123 amidophosphoribosyltr 98.2 6.2E-06 1.4E-10 79.2 9.7 38 156-193 358-395 (479)
62 COG2236 Predicted phosphoribos 98.2 5E-06 1.1E-10 71.3 7.8 91 104-194 5-123 (192)
63 PRK05793 amidophosphoribosyltr 98.2 1.7E-06 3.6E-11 82.8 5.3 44 156-199 351-394 (469)
64 PRK07272 amidophosphoribosyltr 98.1 3.3E-06 7.1E-11 81.3 5.7 40 155-194 347-386 (484)
65 PLN02541 uracil phosphoribosyl 98.1 4.1E-06 8.8E-11 74.2 4.9 51 155-207 154-206 (244)
66 KOG3367 Hypoxanthine-guanine p 98.1 3.4E-05 7.5E-10 65.7 10.1 116 76-199 44-166 (216)
67 TIGR01134 purF amidophosphorib 98.1 4.6E-06 9.9E-11 79.3 5.4 39 156-194 336-374 (442)
68 PRK08341 amidophosphoribosyltr 98.0 5.5E-06 1.2E-10 78.9 5.1 38 156-193 332-369 (442)
69 PRK06388 amidophosphoribosyltr 98.0 6.8E-06 1.5E-10 78.9 5.2 39 156-194 354-392 (474)
70 PRK07631 amidophosphoribosyltr 98.0 8.9E-06 1.9E-10 78.2 5.1 40 155-194 345-384 (475)
71 COG2065 PyrR Pyrimidine operon 97.9 0.00011 2.4E-09 62.0 9.1 44 156-199 94-138 (179)
72 PRK07847 amidophosphoribosyltr 97.7 4.5E-05 9.8E-10 73.9 5.4 37 156-192 365-401 (510)
73 KOG1448 Ribose-phosphate pyrop 97.6 0.00022 4.7E-09 65.0 7.7 55 152-207 209-263 (316)
74 COG0035 Upp Uracil phosphoribo 97.5 0.00011 2.5E-09 63.8 4.8 57 155-213 121-182 (210)
75 COG0034 PurF Glutamine phospho 97.3 0.00021 4.6E-09 68.3 3.7 39 155-193 345-383 (470)
76 PF14681 UPRTase: Uracil phosp 97.3 0.0011 2.3E-08 57.0 7.6 50 156-207 119-170 (207)
77 PF15609 PRTase_2: Phosphoribo 97.0 0.0076 1.6E-07 51.9 10.4 107 92-198 14-162 (191)
78 COG1926 Predicted phosphoribos 97.0 0.0012 2.6E-08 57.7 4.9 41 156-196 122-162 (220)
79 KOG0572 Glutamine phosphoribos 95.4 0.019 4.1E-07 54.4 4.4 38 156-193 354-391 (474)
80 KOG1503 Phosphoribosylpyrophos 93.5 0.13 2.7E-06 46.5 4.9 59 156-214 245-303 (354)
81 KOG1017 Predicted uracil phosp 87.2 2.1 4.6E-05 37.8 6.5 32 157-188 188-219 (267)
82 PF15610 PRTase_3: PRTase ComF 85.3 1 2.2E-05 40.9 3.8 33 156-188 136-168 (274)
83 KOG1377 Uridine 5'- monophosph 62.7 22 0.00047 32.2 6.0 99 97-198 64-192 (261)
84 PF11382 DUF3186: Protein of u 49.4 45 0.00097 30.5 5.9 44 156-199 81-124 (308)
85 PF07931 CPT: Chloramphenicol 42.1 30 0.00065 29.1 3.3 47 157-206 82-129 (174)
86 PF02875 Mur_ligase_C: Mur lig 35.0 80 0.0017 22.7 4.3 36 159-194 12-49 (91)
87 PF02153 PDH: Prephenate dehyd 34.8 1.4E+02 0.0029 26.2 6.5 37 154-190 119-155 (258)
88 COG0784 CheY FOG: CheY-like re 34.6 94 0.002 22.6 4.8 26 157-185 4-29 (130)
89 PF13793 Pribosyltran_N: N-ter 34.6 2.2E+02 0.0048 22.2 8.6 52 138-189 27-82 (116)
90 cd03572 ENTH_epsin_related ENT 34.5 25 0.00054 28.2 1.6 46 81-127 6-52 (122)
91 cd00158 RHOD Rhodanese Homolog 33.7 1.1E+02 0.0023 20.9 4.6 31 155-188 47-77 (89)
92 smart00450 RHOD Rhodanese Homo 32.1 1E+02 0.0022 21.1 4.4 32 154-188 52-83 (100)
93 cd01444 GlpE_ST GlpE sulfurtra 29.5 1E+02 0.0022 21.7 4.1 31 155-188 53-83 (96)
94 PF01555 N6_N4_Mtase: DNA meth 29.3 42 0.00091 27.3 2.2 23 161-183 193-215 (231)
95 cd01529 4RHOD_Repeats Member o 28.8 1.1E+02 0.0024 21.9 4.2 30 156-188 54-83 (96)
96 KOG0369 Pyruvate carboxylase [ 27.6 64 0.0014 33.6 3.5 25 169-193 771-795 (1176)
97 PF12646 DUF3783: Domain of un 27.0 1.3E+02 0.0028 20.6 4.0 36 160-197 2-37 (58)
98 PF04189 Gcd10p: Gcd10p family 26.1 1E+02 0.0022 28.4 4.2 31 152-187 196-226 (299)
99 PF00595 PDZ: PDZ domain (Also 25.1 1E+02 0.0022 21.4 3.4 34 155-188 43-76 (81)
100 TIGR02825 B4_12hDH leukotriene 24.7 1.6E+02 0.0035 25.7 5.2 35 154-191 135-169 (325)
101 TIGR01251 ribP_PPkin ribose-ph 23.8 2.8E+02 0.0061 25.1 6.7 52 138-189 27-83 (308)
102 cd08295 double_bond_reductase_ 22.4 1.9E+02 0.0041 25.5 5.2 35 154-191 148-182 (338)
103 TIGR00432 arcsn_tRNA_tgt tRNA- 22.1 92 0.002 31.0 3.4 31 154-184 496-529 (540)
104 COG4252 Predicted transmembran 21.9 1.4E+02 0.0031 28.6 4.5 51 156-206 57-117 (400)
105 PRK11861 bifunctional prephena 21.8 3.3E+02 0.0071 27.4 7.3 88 92-190 21-108 (673)
106 cd08294 leukotriene_B4_DH_like 21.3 2.1E+02 0.0046 24.6 5.3 35 154-191 140-174 (329)
107 PF04723 GRDA: Glycine reducta 21.3 1.9E+02 0.0041 24.1 4.5 34 156-191 3-36 (150)
108 cd08239 THR_DH_like L-threonin 21.2 1.9E+02 0.004 25.4 4.9 33 154-190 160-193 (339)
109 TIGR03884 sel_bind_Methan sele 20.7 1.9E+02 0.0041 21.4 4.0 41 96-138 14-54 (74)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.9e-40 Score=271.05 Aligned_cols=143 Identities=67% Similarity=1.111 Sum_probs=138.8
Q ss_pred CchHHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcC---CCccEEE-------------------
Q 027972 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVA------------------- 131 (216)
Q Consensus 74 ~~~~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~---~~iDvVv------------------- 131 (216)
.|+|++.|+.+||.+||||++||+|.|+++++.||.+|+.+++.|+++|++ +++|+|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 589999999999999999999999999999999999999999999999998 7899999
Q ss_pred ------------eeEEEEeeecccCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 132 ------------GEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 132 ------------G~~ia~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
|.+++.+|.+|||++.++|+++++++|+||+||||+++||||+.+|.+++++.||++++|+|+++.++
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceeccC
Q 027972 200 LKGRERLGEKPLFVLVS 216 (216)
Q Consensus 200 ~~g~e~L~~~pv~sLl~ 216 (216)
++|+++|.++|+++|++
T Consensus 164 LkGr~kL~~~pl~~Ll~ 180 (183)
T KOG1712|consen 164 LKGREKLKGKPLFSLLE 180 (183)
T ss_pred cCCccccCCCccEEEee
Confidence 99999999999999985
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=99.97 E-value=2.7e-30 Score=218.72 Aligned_cols=143 Identities=80% Similarity=1.259 Sum_probs=130.8
Q ss_pred CchHHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee--------------------
Q 027972 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------- 133 (216)
Q Consensus 74 ~~~~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------- 133 (216)
.||+++.|++.||++||||++|+.|+|++.++.||+.++.+++.|++++++.++|+|+|.
T Consensus 10 ~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 10 GDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred CChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEE
Confidence 599999999999999999999999999999999999999999999999988889999831
Q ss_pred -----------EEEEeeecccCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCccc
Q 027972 134 -----------VISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 202 (216)
Q Consensus 134 -----------~ia~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g 202 (216)
.+...|..+||++.++++.+.+.+|+|||||||+++||+|+.+++++++++|+++++++|+++.+.++|
T Consensus 90 ~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g 169 (187)
T PLN02293 90 PLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKG 169 (187)
T ss_pred EEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccH
Confidence 233445558888888888888889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeccC
Q 027972 203 RERLGEKPLFVLVS 216 (216)
Q Consensus 203 ~e~L~~~pv~sLl~ 216 (216)
+++|.++|+++|++
T Consensus 170 ~~~l~~~~~~sl~~ 183 (187)
T PLN02293 170 REKLNGKPLFVLVE 183 (187)
T ss_pred HHHhcCCceEEEEe
Confidence 99999999999874
No 3
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.93 E-value=9.1e-25 Score=183.70 Aligned_cols=139 Identities=50% Similarity=0.774 Sum_probs=126.3
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-----------------------
Q 027972 77 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE----------------------- 133 (216)
Q Consensus 77 ~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~----------------------- 133 (216)
.++.|++.++..|+||++|+.|+|.++++.+|..+...++.|+++|.+.++|.|+|+
T Consensus 4 ~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 4 LMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 356799999999999999999999999999999999999999999999899999921
Q ss_pred --------EEEEeeecccCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccc
Q 027972 134 --------VISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER 205 (216)
Q Consensus 134 --------~ia~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~ 205 (216)
.+...|..+|++..++++.+.+.+|+|||||||+++||||+.+++++++++|+++++++++++.++++|+.+
T Consensus 84 K~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~ 163 (179)
T COG0503 84 KKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKK 163 (179)
T ss_pred ecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccchh
Confidence 234566678888889999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC--CCceecc
Q 027972 206 LGE--KPLFVLV 215 (216)
Q Consensus 206 L~~--~pv~sLl 215 (216)
+.. +|+++|.
T Consensus 164 l~~~~~~v~~l~ 175 (179)
T COG0503 164 LEDDGLPVFSLV 175 (179)
T ss_pred hccCCceEEEEE
Confidence 864 8888774
No 4
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.6e-24 Score=180.18 Aligned_cols=139 Identities=58% Similarity=0.956 Sum_probs=119.7
Q ss_pred HHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEE--
Q 027972 78 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VIS-- 136 (216)
Q Consensus 78 ~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia-- 136 (216)
++.|++..+..|+||.+|+.|.|++.++.||+.++.+++.++++|++.++|+|+|. .+.
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 57799999999999999999999999999999999999999999988789999932 111
Q ss_pred ----------EeeecccCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCccccccc
Q 027972 137 ----------EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 206 (216)
Q Consensus 137 ----------~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L 206 (216)
..|..+|++..+++..+.+.+|++||||||+++||+|+.+++++++++|+++++++|++++.+++|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l 162 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKL 162 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhc
Confidence 2222344555666655566899999999999999999999999999999999999999999987788899
Q ss_pred CCCCceeccC
Q 027972 207 GEKPLFVLVS 216 (216)
Q Consensus 207 ~~~pv~sLl~ 216 (216)
.++|++||++
T Consensus 163 ~~~~~~sl~~ 172 (175)
T PRK02304 163 EGYPVKSLVK 172 (175)
T ss_pred CCCceEEEEE
Confidence 8999999874
No 5
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.92 E-value=1.1e-24 Score=180.54 Aligned_cols=136 Identities=52% Similarity=0.859 Sum_probs=114.6
Q ss_pred HHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEE-----
Q 027972 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VIS----- 136 (216)
Q Consensus 81 l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia----- 136 (216)
|+++++.+||||+||+.|.|++.++.||+.++.+++.|++++.+.++|+|+|+ .+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45778899999999999999999999999999999999999988889999942 111
Q ss_pred -------EeeecccCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC-
Q 027972 137 -------EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE- 208 (216)
Q Consensus 137 -------~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~- 208 (216)
..|..+++.+.+++....+.+|++|||||||+|||+|+.+++++|+++|++++++++++++.+.+|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 122223444445555555579999999999999999999999999999999999999999988789999865
Q ss_pred CCceeccC
Q 027972 209 KPLFVLVS 216 (216)
Q Consensus 209 ~pv~sLl~ 216 (216)
+|++||++
T Consensus 161 ~~~~sl~~ 168 (169)
T TIGR01090 161 VPVFSLLE 168 (169)
T ss_pred CceEEEEe
Confidence 89999874
No 6
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=2.6e-24 Score=181.92 Aligned_cols=138 Identities=28% Similarity=0.430 Sum_probs=116.2
Q ss_pred HHHHHHhhcccCCCCCCCCc--EEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EE
Q 027972 77 RIAGISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VI 135 (216)
Q Consensus 77 ~~~~l~~~Ir~~PdfPk~Gi--~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~i 135 (216)
+++.+.+.+|++|+||++|+ .|+|+++++. |+.++.+++.|++++ +.++|+|+|+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~ 79 (187)
T PRK12560 2 LLKNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAM 79 (187)
T ss_pred hhHHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEE
Confidence 35568889999999999999 8999999999 999999999999988 6789999943 12
Q ss_pred EEee----------ecccCcccee--eecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccc
Q 027972 136 SEEY----------SLEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR 203 (216)
Q Consensus 136 a~~y----------~~eyG~~~l~--i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~ 203 (216)
.+++ .++||+..++ +..+.+.+|+|||||||+++||+|+.+++++++++|+++++++|++++.+.+|+
T Consensus 80 ~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~ 159 (187)
T PRK12560 80 ARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGR 159 (187)
T ss_pred eccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchH
Confidence 2211 1455555554 455567899999999999999999999999999999999999999999877788
Q ss_pred ccc---CCCCceeccC
Q 027972 204 ERL---GEKPLFVLVS 216 (216)
Q Consensus 204 e~L---~~~pv~sLl~ 216 (216)
+.+ .++|+++|++
T Consensus 160 ~~l~~~~gv~v~sl~~ 175 (187)
T PRK12560 160 KKLFTQTGINVKSLVK 175 (187)
T ss_pred HHHhhccCCcEEEEEE
Confidence 888 4899999873
No 7
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=2.5e-21 Score=164.15 Aligned_cols=126 Identities=25% Similarity=0.400 Sum_probs=110.9
Q ss_pred CCCCC----CCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeecccC
Q 027972 88 IPDFP----KPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSLEYG 144 (216)
Q Consensus 88 ~PdfP----k~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~eyG 144 (216)
+.+|- +++..|+|++.++.+|+.++.+++.|++++++.++|.|+|. ++.++..++||
T Consensus 31 ~g~F~L~SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g 110 (187)
T PRK13810 31 YGDFTLSSGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYG 110 (187)
T ss_pred ecCEEEcCCCcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccC
Confidence 45675 34579999999999999999999999999998899999942 56788889999
Q ss_pred ccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 145 KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 145 ~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
++.+. .+.+.+|+||+|||||+|||+|+.+++++++++|++|++++|++++.+ +|+++|. |+|+++|++
T Consensus 111 ~~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 111 TGSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred CCceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEEE
Confidence 87653 467789999999999999999999999999999999999999999986 7888885 799999863
No 8
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.83 E-value=6.6e-20 Score=155.66 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=107.7
Q ss_pred HHHHHhhcccCCCCCCCCcEEEe-chhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEE
Q 027972 78 IAGISSAIRVIPDFPKPGIMFQD-ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISE 137 (216)
Q Consensus 78 ~~~l~~~Ir~~PdfPk~Gi~f~D-it~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~ 137 (216)
.|.+++.=|..| .||.|+| ..++..||+.++.+++.|++++++.++|+|+|. .+.+
T Consensus 5 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 5 EERILKDGKVLS----GNILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHhcCCEEcC----CCEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 455666667666 3776652 444559999999999999999998899999932 3444
Q ss_pred eeeccc----------------CccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcc
Q 027972 138 EYSLEY----------------GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELK 201 (216)
Q Consensus 138 ~y~~ey----------------G~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~ 201 (216)
+..+.+ +...++++.+.+.+|+|||||||+++||+|+.+++++++++||+++++++++++..++
T Consensus 81 K~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~ 160 (189)
T PRK09219 81 KKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQD 160 (189)
T ss_pred ECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCcc
Confidence 443322 1235677878889999999999999999999999999999999999999999998777
Q ss_pred cccccC--CCCceeccC
Q 027972 202 GRERLG--EKPLFVLVS 216 (216)
Q Consensus 202 g~e~L~--~~pv~sLl~ 216 (216)
|+++|. ++|+++|++
T Consensus 161 g~~~l~~~g~~~~sl~~ 177 (189)
T PRK09219 161 GRKLLEEKGYRVESLAR 177 (189)
T ss_pred HHHHHHhcCCcEEEEEE
Confidence 888874 689999863
No 9
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.83 E-value=8.7e-20 Score=155.10 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=106.3
Q ss_pred HHHHhhcccCCCCCCCCcEEEec-hhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEe
Q 027972 79 AGISSAIRVIPDFPKPGIMFQDI-TTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEE 138 (216)
Q Consensus 79 ~~l~~~Ir~~PdfPk~Gi~f~Di-t~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~ 138 (216)
+.|.+.=|..| .|++|.|. .+...||+.++.+++.|+++|++.++|+|+|. .+.++
T Consensus 6 ~~~~~~~~~~~----~~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 6 QKIKEEGVVLP----GGILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHhcCCEEcC----CCEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 33555555555 47777663 22347999999999999999998899999931 34444
Q ss_pred eecc----------------cCccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCccc
Q 027972 139 YSLE----------------YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 202 (216)
Q Consensus 139 y~~e----------------yG~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g 202 (216)
..+. |+...++++.+.+.+|+||||||||+|||+|+.+++++++++||++++++|++++.+++|
T Consensus 82 ~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g 161 (191)
T TIGR01744 82 KKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNG 161 (191)
T ss_pred CCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccH
Confidence 4332 334456777777889999999999999999999999999999999999999999997789
Q ss_pred ccccC--CCCceeccC
Q 027972 203 RERLG--EKPLFVLVS 216 (216)
Q Consensus 203 ~e~L~--~~pv~sLl~ 216 (216)
+++|. ++|+++|++
T Consensus 162 ~~~l~~~gvpv~sL~~ 177 (191)
T TIGR01744 162 RQELVELGYRVESLAR 177 (191)
T ss_pred HHHHHhcCCcEEEEEE
Confidence 98884 699999863
No 10
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.82 E-value=1.4e-19 Score=155.55 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=106.9
Q ss_pred CCCCC-CCCc---EEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeecccC
Q 027972 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSLEYG 144 (216)
Q Consensus 88 ~PdfP-k~Gi---~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~eyG 144 (216)
+.+|- +.|. .|+|++.++.+|+.++.+++.|++.+++.++|+|+|+ .+.++..+.+|
T Consensus 25 ~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G 104 (206)
T PRK13809 25 FGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVD 104 (206)
T ss_pred ECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 46777 4565 9999999999999999999999999987789999953 45566667777
Q ss_pred ccc-eeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 145 KDV-MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 145 ~~~-l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
+.. +++ .+.+.+|++|+|||||+|||+|+.+++++|+++|+++++++|++++.. +|++++. |+|+++|++
T Consensus 105 ~~~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~-~~~~~l~~~gi~v~sl~~ 177 (206)
T PRK13809 105 PSDAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQK-GACQPLGPQGIKLSSVFT 177 (206)
T ss_pred CcCEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcc-cHHHHHHhcCCCEEEEEE
Confidence 553 433 356679999999999999999999999999999999999999999874 6788774 689999863
No 11
>PRK09213 pur operon repressor; Provisional
Probab=99.81 E-value=2.9e-19 Score=159.49 Aligned_cols=157 Identities=26% Similarity=0.382 Sum_probs=115.1
Q ss_pred cccCCCCCcchhhhcccccCCchHHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee
Q 027972 54 STVSGDSTQPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE 133 (216)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~ 133 (216)
.|..|.+.+............+.-++.|.+.+.. ++.-.|| -|++++.++.||+.++.+++.|+++|.+.++|+|+|.
T Consensus 60 ~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~-~~rilpG-gf~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtv 137 (271)
T PRK09213 60 ETVPGAAGGVKYIPSISEEEAREFVEELCERLSE-PDRILPG-GYLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTV 137 (271)
T ss_pred EEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHh-CCccCCC-CeEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEE
Confidence 3455566655543322221234555666665544 4444454 2567889999999999999999999998899999931
Q ss_pred -------------------EEEEeeecc-----------cCcc----ceeeecCcccCCCEEEEEeccccccHHHHHHHH
Q 027972 134 -------------------VISEEYSLE-----------YGKD----VMEMHVGAVQAGERALIVDDLVATGGTLSAAIR 179 (216)
Q Consensus 134 -------------------~ia~~y~~e-----------yG~~----~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~ 179 (216)
.+.++..+- +|+. .++++++.+.+|+|||||||+++||+|+.++++
T Consensus 138 et~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~ 217 (271)
T PRK09213 138 ETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMIS 217 (271)
T ss_pred ccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHH
Confidence 344443331 2332 477888888999999999999999999999999
Q ss_pred HHHHcCCEEEEEEEEEEccCcccccccCCCCceecc
Q 027972 180 LLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 215 (216)
Q Consensus 180 lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sLl 215 (216)
+++++||+++++++++++.+ +.+++ ..|++||+
T Consensus 218 Ll~e~Ga~VvGv~vlVd~~~--~~~~l-~~~~~SL~ 250 (271)
T PRK09213 218 LLKEFDAEVVGIGVLVETKE--PEERL-VDDYVSLL 250 (271)
T ss_pred HHHHCCCEEEEEEEEEECCC--Chhhc-CCceEEEE
Confidence 99999999999999999985 55666 34788876
No 12
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.81 E-value=3.5e-19 Score=158.73 Aligned_cols=157 Identities=20% Similarity=0.350 Sum_probs=114.2
Q ss_pred cccCCCCCcchhhhcccccCCchHHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee
Q 027972 54 STVSGDSTQPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE 133 (216)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~ 133 (216)
.|..|.+.+......-.....+.-++.|.+.+.. |+.-.|| -|++++.++.||+.++.+++.|+++|.+.++|+|+|.
T Consensus 58 ~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~-~~rilpg-g~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~Vvgv 135 (268)
T TIGR01743 58 LTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSE-PERILPG-GYLYLTDILGKPSILSKIGKILASVFAEREIDAVMTV 135 (268)
T ss_pred EEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH-CCCcccC-CeEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 3455556555544322221134455556666654 3333343 2556899999999999999999999998899999931
Q ss_pred -------------------EEEEeeecc---------c--Ccc----ceeeecCcccCCCEEEEEeccccccHHHHHHHH
Q 027972 134 -------------------VISEEYSLE---------Y--GKD----VMEMHVGAVQAGERALIVDDLVATGGTLSAAIR 179 (216)
Q Consensus 134 -------------------~ia~~y~~e---------y--G~~----~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~ 179 (216)
++.++..+- | |+. .++++++.+.+|+|||||||+++||+|+.++++
T Consensus 136 etkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~ 215 (268)
T TIGR01743 136 ATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMIN 215 (268)
T ss_pred ccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHH
Confidence 334443331 1 332 477788888999999999999999999999999
Q ss_pred HHHHcCCEEEEEEEEEEccCcccccccCCCCceecc
Q 027972 180 LLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 215 (216)
Q Consensus 180 lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sLl 215 (216)
+++++||++++++|++++.+ +.+++. .|++||+
T Consensus 216 Ll~e~Ga~VvGv~vlve~~~--~~~~l~-~~~~SL~ 248 (268)
T TIGR01743 216 LLDEFDAEVAGIGVLIDNEG--VDEKLV-DDYMSLL 248 (268)
T ss_pred HHHHCCCEEEEEEEEEECCC--ChHHcC-CCceEEE
Confidence 99999999999999999975 566663 4888876
No 13
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.79 E-value=2.2e-18 Score=144.65 Aligned_cols=124 Identities=26% Similarity=0.416 Sum_probs=104.4
Q ss_pred CCCCC-CCCc---EEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEe-------------------eEEEEeeecccC
Q 027972 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAG-------------------EVISEEYSLEYG 144 (216)
Q Consensus 88 ~PdfP-k~Gi---~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG-------------------~~ia~~y~~eyG 144 (216)
+.+|. ++|. .|+|++.+..+|+.++.+++.|++++.+. |+|+| ..+.++..++||
T Consensus 18 ~g~f~l~SG~~S~~yid~~~~~~~p~~~~~i~~~l~~~i~~~--d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg 95 (176)
T PRK13812 18 FGEFELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRIDED--TKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYG 95 (176)
T ss_pred eCCEEECcCCcCCEEEeCeeccCCHHHHHHHHHHHHHHhccC--CEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 35677 3454 99999999999999999999999998653 78883 256777788898
Q ss_pred ccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 145 KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 145 ~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
..... .+.+.+|++||||||+++||+|+.+++++++++|+++++++|++++.. +|+++++ |+|+++|++
T Consensus 96 ~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~-~~~~~l~~~g~~v~sL~~ 166 (176)
T PRK13812 96 TGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREE-GARENLADHDVELEALVT 166 (176)
T ss_pred CCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCc-chHHHHHhcCCcEEEEEe
Confidence 76432 256779999999999999999999999999999999999999999974 6777773 799999874
No 14
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.78 E-value=1.6e-18 Score=144.34 Aligned_cols=119 Identities=15% Similarity=0.277 Sum_probs=100.6
Q ss_pred cEEEechhhhcCHHHHHHHHHHHHHHhcC-CCccEEEee------------------------EEEEeeecccCccceee
Q 027972 96 IMFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGE------------------------VISEEYSLEYGKDVMEM 150 (216)
Q Consensus 96 i~f~Dit~Ll~dP~~~~~l~~~lae~~~~-~~iDvVvG~------------------------~ia~~y~~eyG~~~l~i 150 (216)
-.|+|++.++.+|+.++.+++.+++.+++ .++|+|+|+ .+.++..++||....
T Consensus 23 ~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~-- 100 (173)
T TIGR00336 23 PYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGN-- 100 (173)
T ss_pred CEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCc--
Confidence 39999999999999999999999999986 689999932 233444556775542
Q ss_pred ecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC---CCCceeccC
Q 027972 151 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG---EKPLFVLVS 216 (216)
Q Consensus 151 ~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~---~~pv~sLl~ 216 (216)
..+.+.+|++||||||+++||+|+.+++++|+++|+++++++|++++.+.+|.+++. ++|+++|++
T Consensus 101 ~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~sl~~ 169 (173)
T TIGR00336 101 IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLIT 169 (173)
T ss_pred eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEEEEe
Confidence 235667999999999999999999999999999999999999999998877888874 899999874
No 15
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.78 E-value=1.5e-18 Score=165.16 Aligned_cols=126 Identities=17% Similarity=0.376 Sum_probs=110.9
Q ss_pred CCCCC-CCCc---EEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeecccC
Q 027972 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSLEYG 144 (216)
Q Consensus 88 ~PdfP-k~Gi---~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~eyG 144 (216)
+.+|- +.|. .|+|++.++.+|+.++.+++.+++.+++.++|+|+|+ ++.++..|+||
T Consensus 302 fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G 381 (477)
T PRK05500 302 FGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHG 381 (477)
T ss_pred eCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccC
Confidence 46787 3565 9999999999999999999999999988889999943 56788889999
Q ss_pred ccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 145 KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 145 ~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
+..+ ..+.+.+|+||||||||+|||+|+.+++++|+++|++|++++|++++.+ +|+++|. ++|++||++
T Consensus 382 ~~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~gv~~~Sl~t 452 (477)
T PRK05500 382 TRRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSHGYQAYSVLT 452 (477)
T ss_pred CCce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhcCCCEEEEEE
Confidence 8764 3577889999999999999999999999999999999999999999987 6788885 689999863
No 16
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.78 E-value=3.1e-18 Score=150.02 Aligned_cols=117 Identities=26% Similarity=0.420 Sum_probs=95.8
Q ss_pred EEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeecccCc-------------
Q 027972 98 FQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSLEYGK------------- 145 (216)
Q Consensus 98 f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~eyG~------------- 145 (216)
|+|++.++.||+.++.+++.|+++|.+.++|+|+|. .+.++. +++|.
T Consensus 83 y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~-~~~~~~~~v~~y~s~s~~ 161 (238)
T PRK08558 83 YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKS-KETGVEKFYEEYQRLASG 161 (238)
T ss_pred EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEec-CCCCCcceEEEeeccCCC
Confidence 899999999999999999999999998889999821 233332 22221
Q ss_pred --cceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC---CCCceeccC
Q 027972 146 --DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG---EKPLFVLVS 216 (216)
Q Consensus 146 --~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~---~~pv~sLl~ 216 (216)
..++++++.+.+|+|||||||+++||+|+.+++++++++||++++++|+++..+ .|.+++. ++|+.+|++
T Consensus 162 ~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~-~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 162 IEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGE-VGIDRAREETDAPVDALYT 236 (238)
T ss_pred ceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCc-hHHHHHhHhcCCCEEEEEE
Confidence 124555567789999999999999999999999999999999999999999986 4566663 789999864
No 17
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.77 E-value=6.3e-18 Score=145.12 Aligned_cols=125 Identities=25% Similarity=0.397 Sum_probs=106.5
Q ss_pred cCCCCCC-CCc---EEEechhhhcCHHHHHHHHHHHHHHhcC-CCccEEEee---------------------EEEEeee
Q 027972 87 VIPDFPK-PGI---MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGE---------------------VISEEYS 140 (216)
Q Consensus 87 ~~PdfPk-~Gi---~f~Dit~Ll~dP~~~~~l~~~lae~~~~-~~iDvVvG~---------------------~ia~~y~ 140 (216)
.+++|+- +|. +|+|+..++.+|+..+.++..+++..++ .++|+|+|+ ++.++..
T Consensus 17 ~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~ 96 (201)
T COG0461 17 KFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEA 96 (201)
T ss_pred ecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEecee
Confidence 3689994 575 9999999999999999999999999988 489999953 2567777
Q ss_pred cccCccc-eeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceecc
Q 027972 141 LEYGKDV-MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 215 (216)
Q Consensus 141 ~eyG~~~-l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl 215 (216)
|+||+.. ++ +...+|+||+|||||+|||+|+..++++++++|++|++++|++++.. ++++.+. ++|+++|+
T Consensus 97 K~hG~~~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~-~~~~~~~~~g~~~~sl~ 170 (201)
T COG0461 97 KDHGTGGLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQS-GAKEVLKEYGVKLVSLV 170 (201)
T ss_pred ccCCCcceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecch-hHHHHHHhcCCceEEEe
Confidence 8999853 33 44459999999999999999999999999999999999999999974 5677775 68888876
No 18
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.76 E-value=7.4e-18 Score=140.49 Aligned_cols=113 Identities=27% Similarity=0.409 Sum_probs=95.3
Q ss_pred EEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeecccCccceeeecCcccC
Q 027972 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSLEYGKDVMEMHVGAVQA 157 (216)
Q Consensus 97 ~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~eyG~~~l~i~~~~i~~ 157 (216)
.|+|+..++.+|+.++.+++.|++.+ ++|+|+|+ .+.++..++||...+.. +. .+
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~~~~~~--g~-~~ 103 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLII--GD-VK 103 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCCCcceEE--cc-cC
Confidence 78899999999999999999987654 58999832 45677777888665432 33 58
Q ss_pred CCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 158 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 158 G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
|+|||||||+++||+|+.+++++|+++||++++++|++++.+ +|+++|. |+|+++|++
T Consensus 104 g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~gv~~~sl~~ 163 (170)
T PRK13811 104 GKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAELGITLTPLVR 163 (170)
T ss_pred CCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhcCCcEEEEeE
Confidence 999999999999999999999999999999999999999985 5677763 789999863
No 19
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.75 E-value=1.5e-17 Score=141.80 Aligned_cols=122 Identities=22% Similarity=0.394 Sum_probs=94.4
Q ss_pred CCCCcEEEechhhhcCHHHHHHHHHHHHHHhc--CCCccEEEeeE-------------------EEEeeecccCccc-ee
Q 027972 92 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGEV-------------------ISEEYSLEYGKDV-ME 149 (216)
Q Consensus 92 Pk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~--~~~iDvVvG~~-------------------ia~~y~~eyG~~~-l~ 149 (216)
|+|+..|+|++.+..+|+.++.+++.|++.+. +.++|+|+|.. +.+.....+|... .+
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~ 128 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKT 128 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccccccc
Confidence 77899999999999999999999999999874 35789999531 1111111122211 11
Q ss_pred --eecC-cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCceeccC
Q 027972 150 --MHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 216 (216)
Q Consensus 150 --i~~~-~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sLl~ 216 (216)
+... ...+|++||||||++|||+|+.+++++++++|+++++++|+++++ |.+++.++|++||++
T Consensus 129 ~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~~~vpv~sl~~ 195 (200)
T PRK02277 129 GSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEIDGVPVYSLIR 195 (200)
T ss_pred ceeccccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhhcCCCeEEEEE
Confidence 1111 225899999999999999999999999999999999999999986 566778999999974
No 20
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.71 E-value=9.6e-17 Score=136.40 Aligned_cols=116 Identities=27% Similarity=0.444 Sum_probs=96.0
Q ss_pred EEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEee-------------------EEEEeeecccCccc-eeeecCc
Q 027972 97 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGE-------------------VISEEYSLEYGKDV-MEMHVGA 154 (216)
Q Consensus 97 ~f~Dit~Ll~dP~~~~~l~~~lae~~~~~--~iDvVvG~-------------------~ia~~y~~eyG~~~-l~i~~~~ 154 (216)
.|+|++.++.||+.++.+++.|++++++. ++|+|+|. .+.++..++||... ++ +.
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~~~~~---~~ 109 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIE---GR 109 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCCceEE---cc
Confidence 89999999999999999999999999875 88999842 34445555666442 22 33
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC--CCCceeccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 216 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~--~~pv~sLl~ 216 (216)
..+|++||||||+++||+|+.+++++++++|+++++++|++++.. +|++++. |+|++||++
T Consensus 110 ~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~~-~~~~~~~~~g~~~~sl~~ 172 (202)
T PRK00455 110 RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQS-AAQEVFADAGVPLISLIT 172 (202)
T ss_pred CCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECcc-hHHHHHHhcCCcEEEEee
Confidence 457999999999999999999999999999999999999999973 5666653 789999874
No 21
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.70 E-value=2.5e-16 Score=133.25 Aligned_cols=122 Identities=30% Similarity=0.466 Sum_probs=96.0
Q ss_pred CCCCC-CCCc---EEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEee-------------------EEEEeeecc
Q 027972 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGE-------------------VISEEYSLE 142 (216)
Q Consensus 88 ~PdfP-k~Gi---~f~Dit~Ll~dP~~~~~l~~~lae~~~~~--~iDvVvG~-------------------~ia~~y~~e 142 (216)
+.+|- ..|. .|+|+++++.||+.++.+++.|++++++. ++|+|+|. .+.++..
T Consensus 14 ~g~f~l~sg~~s~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~-- 91 (187)
T TIGR01367 14 EGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREG-- 91 (187)
T ss_pred eceEEecCCCcCCeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeC--
Confidence 35676 3453 99999999999999999999999999865 77999843 1122111
Q ss_pred cCccceeeecC-cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCceeccC
Q 027972 143 YGKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 216 (216)
Q Consensus 143 yG~~~l~i~~~-~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sLl~ 216 (216)
+.+.+..+ .+.+|++|||||||++||+|+.+++++++++|++++++++++++.+ +.....++|+++|++
T Consensus 92 ---~~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~~~~~~~~~sl~~ 161 (187)
T TIGR01367 92 ---GGMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGKPDSGVPLMSLKE 161 (187)
T ss_pred ---CcEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCcccCCCCEEEEEE
Confidence 22333333 3568999999999999999999999999999999999999999885 444556899999863
No 22
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.70 E-value=2.7e-16 Score=131.71 Aligned_cols=118 Identities=27% Similarity=0.367 Sum_probs=93.0
Q ss_pred HHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEeeec
Q 027972 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGE-------------------VISEEYSL 141 (216)
Q Consensus 81 l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~y~~ 141 (216)
+++..|++|+||.+|..|+|...++.||..++.+++.|++.+.+ ++|+|+|. .+.++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45678999999999888999999999999999999999999986 78988831 22222222
Q ss_pred ccCcc--------------ceeeecC-c--ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 142 EYGKD--------------VMEMHVG-A--VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 142 eyG~~--------------~l~i~~~-~--i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
.|+.. ......+ . ..+|++||||||+++||+|+.+++++|+++||+++++++++.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~ 161 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGD 161 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCC
Confidence 22211 1111111 1 247999999999999999999999999999999999999999876
No 23
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.65 E-value=7.8e-16 Score=134.74 Aligned_cols=120 Identities=21% Similarity=0.357 Sum_probs=91.1
Q ss_pred HHhhcccCCCCCCCCcEEEechhhhcCH---HHHHHHHHHHHHHhcCCCccEEEee-------------------EEEEe
Q 027972 81 ISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGE-------------------VISEE 138 (216)
Q Consensus 81 l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP---~~~~~l~~~lae~~~~~~iDvVvG~-------------------~ia~~ 138 (216)
|...+|.+|+|| .|++.++.+| +.++.+++.|++++.+.++|+|+|. .+...
T Consensus 42 l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~ 115 (233)
T PRK06031 42 LLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLG 115 (233)
T ss_pred eccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEE
Confidence 678899999987 6899999998 4556799999999988789999932 11111
Q ss_pred ee-cccCc----------------cceeeecC--cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 139 YS-LEYGK----------------DVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 139 y~-~eyG~----------------~~l~i~~~--~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
+. +.+.. ..+.+... .+.+|+||||||||++||+|+.+++++|+++|++++++++++++.+
T Consensus 116 ~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g~ 195 (233)
T PRK06031 116 TSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSE 195 (233)
T ss_pred EccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEccc
Confidence 11 11111 11223322 2358999999999999999999999999999999999999999986
Q ss_pred cccccccC
Q 027972 200 LKGRERLG 207 (216)
Q Consensus 200 ~~g~e~L~ 207 (216)
+++++|.
T Consensus 196 -~~~~~l~ 202 (233)
T PRK06031 196 -RWRESLA 202 (233)
T ss_pred -cHHHHHH
Confidence 5776664
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.48 E-value=3.3e-13 Score=113.89 Aligned_cols=121 Identities=23% Similarity=0.323 Sum_probs=92.1
Q ss_pred CCCcEEEechhhhcCHHHHHHHHHHHHHH-hcC--CCccEEEeeEEE-----EeeecccCccc-----------------
Q 027972 93 KPGIMFQDITTLLLDTKAFRDTIDLFVER-YKD--KNISVVAGEVIS-----EEYSLEYGKDV----------------- 147 (216)
Q Consensus 93 k~Gi~f~Dit~Ll~dP~~~~~l~~~lae~-~~~--~~iDvVvG~~ia-----~~y~~eyG~~~----------------- 147 (216)
.|--.|+||+.+-..+..++.++..|++. .+. .++|+|+|...+ .-.+.+.|.+.
T Consensus 50 ~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~ 129 (203)
T COG0856 50 APVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKG 129 (203)
T ss_pred CCcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcC
Confidence 35568999999999999999999999984 332 478999965321 11111111110
Q ss_pred eeeecC-cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCceeccC
Q 027972 148 MEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 216 (216)
Q Consensus 148 l~i~~~-~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sLl~ 216 (216)
=.+..+ +-..|+|++||||++|||.|+.++++.|++.|++.+.|++++++. |.+.+.|+|+.||++
T Consensus 130 G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~---G~dei~gvPi~sLlr 196 (203)
T COG0856 130 GSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK---GVDEIEGVPVESLLR 196 (203)
T ss_pred ceeecccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC---CcccccCcchHHhhe
Confidence 011122 125899999999999999999999999999999999999999986 788899999999975
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.34 E-value=6.7e-12 Score=96.69 Aligned_cols=93 Identities=30% Similarity=0.461 Sum_probs=67.1
Q ss_pred hhhcCHHHHHHHHHHHHHHhcCC--CccEEEee-------------------EEEEee------eccc--Ccc--ceeee
Q 027972 103 TLLLDTKAFRDTIDLFVERYKDK--NISVVAGE-------------------VISEEY------SLEY--GKD--VMEMH 151 (216)
Q Consensus 103 ~Ll~dP~~~~~l~~~lae~~~~~--~iDvVvG~-------------------~ia~~y------~~ey--G~~--~l~i~ 151 (216)
.++.+|+.+..+++.+++++.+. ++|.|+|. .+.... .... ... .+...
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFII 81 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeec
Confidence 46788999999999999998764 44557732 111110 0010 111 12222
Q ss_pred cCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEE
Q 027972 152 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195 (216)
Q Consensus 152 ~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavli 195 (216)
.....+|++||||||+++||+|+.++++.|+++|++++++++++
T Consensus 82 ~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 82 DKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp ESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 33457999999999999999999999999999999999999986
No 26
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=98.95 E-value=7.8e-09 Score=85.88 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=42.4
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
..+|++||||||+++||+|+.++++.|++.|++.+.++++++++.
T Consensus 81 ~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 81 SIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred CCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 357999999999999999999999999999999999999999975
No 27
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.94 E-value=4.8e-09 Score=94.97 Aligned_cols=59 Identities=32% Similarity=0.395 Sum_probs=51.0
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCce
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 212 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~ 212 (216)
...+|++|+||||+++||+|+.++++.|++.||+.+.++|.|.....++.++|.+.++.
T Consensus 207 ~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~ 265 (301)
T PRK07199 207 APWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIA 265 (301)
T ss_pred cccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCC
Confidence 34589999999999999999999999999999999999999998776677777543343
No 28
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.91 E-value=1.3e-08 Score=84.01 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=65.9
Q ss_pred hhcCHHHHHHHHHHHHHHhcCC-CccEEEee------------------E---EE-EeeecccCccceeeecCcccCCCE
Q 027972 104 LLLDTKAFRDTIDLFVERYKDK-NISVVAGE------------------V---IS-EEYSLEYGKDVMEMHVGAVQAGER 160 (216)
Q Consensus 104 Ll~dP~~~~~l~~~lae~~~~~-~iDvVvG~------------------~---ia-~~y~~eyG~~~l~i~~~~i~~G~r 160 (216)
++.+.+.+...++.+++++.+. ++|+|+|. . +. ..|..+ +++.+++..+...+|++
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~-~~~~~~~~~~~~~~gk~ 86 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHD-NQGELKVLKRAEGDGEG 86 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCC-cCCcEEEecCCCcCcCE
Confidence 3467888888999999888654 47888832 1 11 233322 33456665665579999
Q ss_pred EEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 161 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 161 VLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
||||||+++||+|+.++.+++++ +.+++++.++.
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~ 120 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPA 120 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcC
Confidence 99999999999999999999975 57888888875
No 29
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.90 E-value=1.5e-08 Score=85.22 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=42.2
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
..+|++|||||||++||.|+.++.+.|+++|++.+.++++++++.
T Consensus 94 ~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~ 138 (181)
T PRK09162 94 SLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTH 138 (181)
T ss_pred CCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCc
Confidence 358999999999999999999999999999999999999998864
No 30
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.88 E-value=8.9e-09 Score=92.31 Aligned_cols=56 Identities=34% Similarity=0.510 Sum_probs=49.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCc
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPL 211 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv 211 (216)
.+|++|+||||+++||+|+.++++.|++.||+.+.++++|.....++.++|.+.++
T Consensus 202 v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i 257 (285)
T PRK00934 202 VKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGV 257 (285)
T ss_pred cCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCC
Confidence 58999999999999999999999999999999999999999776677777754433
No 31
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.81 E-value=5.2e-08 Score=82.71 Aligned_cols=45 Identities=33% Similarity=0.492 Sum_probs=42.8
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
..+|++|||||||++||+|+.++++.|++.|++.+.++|+++++.
T Consensus 94 ~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 94 DVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred CCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 368999999999999999999999999999999999999999975
No 32
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.78 E-value=1e-07 Score=80.43 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=42.7
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
..+|++|||||||+.||.|+.++.+.+++.|+..+.++++++++.
T Consensus 89 ~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 89 DIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred CCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 368999999999999999999999999999999999999999985
No 33
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.76 E-value=7.9e-09 Score=94.28 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=50.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCce
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 212 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~ 212 (216)
.+|++|||||||++||+|+.++++.|++.||+.+.++|.|.....++.++|.+-++.
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~ 271 (320)
T PRK02269 215 VKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIE 271 (320)
T ss_pred cCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCC
Confidence 579999999999999999999999999999999999999998876677787543443
No 34
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=98.76 E-value=3.1e-08 Score=90.93 Aligned_cols=64 Identities=28% Similarity=0.337 Sum_probs=52.7
Q ss_pred CccceeeecCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 144 GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 144 G~~~l~i~~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
|.....+......+|++|+||||+++||+|+.++.+.|++.|++.+.++|.|.....++.++|.
T Consensus 216 g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~ 279 (326)
T PLN02297 216 GDKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFT 279 (326)
T ss_pred CCceEEEecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHH
Confidence 4333333333346899999999999999999999999999999999999999988766777764
No 35
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.75 E-value=4.9e-08 Score=89.22 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=50.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCce
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 212 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~ 212 (216)
.+|++|+||||+++||+|+.++++.|++.||..+.++|.|.....++.++|.+-++.
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~ 271 (319)
T PRK04923 215 VQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLD 271 (319)
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCC
Confidence 589999999999999999999999999999999999999998876677777543333
No 36
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=98.73 E-value=1.6e-08 Score=85.20 Aligned_cols=40 Identities=35% Similarity=0.503 Sum_probs=37.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavli 195 (216)
.+|++|||||||+|||.|+.++.+.|+++|+..|.++++.
T Consensus 150 ~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 150 FQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred CCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4789999999999999999999999999999999988874
No 37
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.73 E-value=1.4e-07 Score=78.66 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=40.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcC-CEEEEEEEEEEcc
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 198 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~G-a~vv~vavlie~~ 198 (216)
..|++|||||||++||+|+.++++.|++.| +..+.++++++++
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 589999999999999999999999999999 7889999999974
No 38
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.72 E-value=5.3e-08 Score=88.87 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=47.8
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~ 208 (216)
.+|++|+||||+++||||+..|.++|++.||+-|.++|.|........+++..
T Consensus 212 V~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~ 264 (314)
T COG0462 212 VEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEA 264 (314)
T ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhc
Confidence 68999999999999999999999999999999999999999877555666654
No 39
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.8e-07 Score=79.13 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=48.0
Q ss_pred cceeeecC--cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 146 DVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 146 ~~l~i~~~--~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
+.+.+.++ .-.+|++|||||||+.||.|+..+.++|+..||+.+.++++++++.
T Consensus 79 g~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~ 134 (178)
T COG0634 79 GEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPE 134 (178)
T ss_pred CceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcc
Confidence 34666655 3368999999999999999999999999999999999999999997
No 40
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.66 E-value=1.4e-07 Score=85.67 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=47.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~ 208 (216)
.+|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.++|..
T Consensus 206 ~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~ 258 (309)
T PRK01259 206 VEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIEN 258 (309)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhc
Confidence 57999999999999999999999999999999999999998876567777743
No 41
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.65 E-value=1e-07 Score=83.12 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=36.3
Q ss_pred CEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEE
Q 027972 159 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196 (216)
Q Consensus 159 ~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie 196 (216)
++|+|||||+|||.|+.++.+.|++.|++.|.+.++.-
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar 222 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLAR 222 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEe
Confidence 89999999999999999999999999999999998864
No 42
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.65 E-value=2.4e-08 Score=91.35 Aligned_cols=58 Identities=28% Similarity=0.416 Sum_probs=50.8
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCcee
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 213 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~s 213 (216)
.+|++|+|||||++||+|+.++.+.|++.||+.|.++|.|.....++.++|.+-++..
T Consensus 216 V~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~ 273 (323)
T PRK02458 216 VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKE 273 (323)
T ss_pred cCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCE
Confidence 5899999999999999999999999999999999999999988766677776544443
No 43
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.62 E-value=4e-07 Score=80.47 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=42.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
.+|++|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 148 l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 148 LKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred cCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 58999999999999999999999999999999999999999874
No 44
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.61 E-value=5.1e-08 Score=89.53 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=47.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
.+|++|+||||+++||+|+.++.+.|++.||+.+.++|.|.....++.++|.
T Consensus 216 v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~ 267 (332)
T PRK00553 216 VKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFD 267 (332)
T ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHH
Confidence 5899999999999999999999999999999999999999987766777763
No 45
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.59 E-value=4.4e-08 Score=83.41 Aligned_cols=59 Identities=34% Similarity=0.445 Sum_probs=49.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCceec
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 214 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sL 214 (216)
.+|+.++||||++.||+|+.++.++|++.||.-|.+++.|.....++.++|.+-++..+
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~v 139 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEV 139 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEE
Confidence 58999999999999999999999999999999999999999887677888876555544
No 46
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.58 E-value=7.2e-07 Score=77.39 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=42.6
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
-..|++|||||||+.||.|+.++++.|++.|++-+.++++++++.
T Consensus 115 ~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 115 SVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred CCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 368999999999999999999999999999999999999999975
No 47
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.57 E-value=5.8e-08 Score=88.05 Aligned_cols=53 Identities=32% Similarity=0.483 Sum_probs=47.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~ 208 (216)
.+|++|+||||+++||+|+.++++.|++.|++.+.++|.|.....++.++|.+
T Consensus 199 v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~ 251 (304)
T PRK03092 199 VEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKN 251 (304)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHH
Confidence 58999999999999999999999999999999999999988876566777754
No 48
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.57 E-value=6.2e-08 Score=91.98 Aligned_cols=58 Identities=29% Similarity=0.326 Sum_probs=51.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCcee
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 213 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~s 213 (216)
.+|++|+||||+++||+|+.++++.|++.||..+.++|.|.....++.++|.+-++..
T Consensus 333 V~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ 390 (439)
T PTZ00145 333 VYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEE 390 (439)
T ss_pred CCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCE
Confidence 5899999999999999999999999999999999999999988767778886544443
No 49
>PRK11595 DNA utilization protein GntX; Provisional
Probab=98.52 E-value=1.5e-07 Score=81.55 Aligned_cols=41 Identities=37% Similarity=0.565 Sum_probs=38.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie 196 (216)
.+|++|||||||+|||.|+.++.+.|+++|+..|.++++..
T Consensus 185 ~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 47999999999999999999999999999999999988853
No 50
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.50 E-value=6.5e-07 Score=81.08 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=46.6
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~ 208 (216)
.+|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.++|..
T Consensus 208 v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~ 260 (308)
T TIGR01251 208 VEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIAN 260 (308)
T ss_pred cCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHh
Confidence 58999999999999999999999999999999999999998665556666643
No 51
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=98.47 E-value=1.6e-07 Score=85.10 Aligned_cols=53 Identities=28% Similarity=0.409 Sum_probs=47.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 208 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~ 208 (216)
.+|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.++|..
T Consensus 200 v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~ 252 (302)
T PLN02369 200 VKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSS 252 (302)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHh
Confidence 47999999999999999999999999999999999999887766567777754
No 52
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.45 E-value=1.8e-07 Score=85.90 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=48.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCc
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPL 211 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv 211 (216)
.+|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.++|.+.++
T Consensus 228 v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~i 283 (330)
T PRK02812 228 VKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLF 283 (330)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCC
Confidence 58999999999999999999999999999999999999998876567777763333
No 53
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.42 E-value=2.8e-07 Score=87.59 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=45.4
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
.+|++||||||++|||+|+.++++.|+++||+.|.+++.+..........+.
T Consensus 338 v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~ 389 (445)
T PRK08525 338 LEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGID 389 (445)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCc
Confidence 5799999999999999999999999999999999999998866545555554
No 54
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.41 E-value=3e-07 Score=86.05 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=47.0
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
-.+|++||||||+++||+|+..+++.|++.||+.+.++|+|.... +|.++|.
T Consensus 261 dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~ 312 (382)
T PRK06827 261 DVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFD 312 (382)
T ss_pred ccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHH
Confidence 358999999999999999999999999999999999999999865 6777663
No 55
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.38 E-value=1.5e-06 Score=83.67 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=37.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavli 195 (216)
.+|++||||||++|||.|+.+++++|+++||+.|.++++.
T Consensus 356 v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 356 FKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred ccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 5799999999999999999999999999999998888873
No 56
>PLN02440 amidophosphoribosyltransferase
Probab=98.36 E-value=2.5e-06 Score=81.83 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=37.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 195 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavli 195 (216)
.+|++||||||+++||.|+.+++++|+++|++.|.++++.
T Consensus 338 v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 338 LEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 5899999999999999999999999999999998888875
No 57
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.36 E-value=3.7e-07 Score=87.46 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=35.8
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
..+|++|+||||++|||.|+.+++++|+++||+.|.+.+.
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 3579999999999999999999999999999998766544
No 58
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.35 E-value=1.5e-06 Score=74.67 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=45.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
.+|++||||||+++||+|+.++++.|++.|++.+.+++++..+. |.+++.
T Consensus 120 i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~--gl~~l~ 169 (207)
T TIGR01091 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPE--GIEAVE 169 (207)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecCHH--HHHHHH
Confidence 57899999999999999999999999999999999999988774 777764
No 59
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.33 E-value=2e-06 Score=73.88 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=45.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
.+|++||||||+++||+|+.++++.|++.|++.+.+++++..+. |.+++.
T Consensus 122 i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~--gl~~l~ 171 (209)
T PRK00129 122 IDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPE--GIKALE 171 (209)
T ss_pred CCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHH--HHHHHH
Confidence 47899999999999999999999999999999999999988875 777764
No 60
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.26 E-value=3.4e-06 Score=81.48 Aligned_cols=39 Identities=33% Similarity=0.474 Sum_probs=35.3
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
..+|++||||||++|||.|+.+++++|+++||+.|.+.+
T Consensus 374 ~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 374 VLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI 412 (500)
T ss_pred ccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEe
Confidence 357999999999999999999999999999999876553
No 61
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.22 E-value=6.2e-06 Score=79.23 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=35.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
.+|++||||||+++||+|+.++++.|+++|++.|.+.+
T Consensus 358 ~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 358 IEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred cCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 57999999999999999999999999999999888776
No 62
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.21 E-value=5e-06 Score=71.33 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=59.5
Q ss_pred hhcCHHHHHHHHHHHHHHhc--CCCccEEEe-----eE----------------EEEeeecccCc--cceeeecC-cc--
Q 027972 104 LLLDTKAFRDTIDLFVERYK--DKNISVVAG-----EV----------------ISEEYSLEYGK--DVMEMHVG-AV-- 155 (216)
Q Consensus 104 Ll~dP~~~~~l~~~lae~~~--~~~iDvVvG-----~~----------------ia~~y~~eyG~--~~l~i~~~-~i-- 155 (216)
.+.+.+.+..++..+++++. +..+|+|++ .. +..+.-.+-+. ....+... .+
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~ 84 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDP 84 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccc
Confidence 34567889999999999997 467899882 11 11111111111 12222222 11
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
..|+||||||||..||.||..+.+.|++.....+.++++
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred cCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 589999999999999999999999999955444444433
No 63
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.20 E-value=1.7e-06 Score=82.83 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=40.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
.+|++||||||+++||+|+.++++.|+++||+.|.+++.+....
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~ 394 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVK 394 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcC
Confidence 48999999999999999999999999999999999888876443
No 64
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.13 E-value=3.3e-06 Score=81.27 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=38.1
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
..+|++||||||++|||.|+.+++++|+++|++.+.+++.
T Consensus 347 ~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 347 VVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred ccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3579999999999999999999999999999999999999
No 65
>PLN02541 uracil phosphoribosyltransferase
Probab=98.08 E-value=4.1e-06 Score=74.21 Aligned_cols=51 Identities=35% Similarity=0.617 Sum_probs=42.5
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCE--EEEEEEEEEccCcccccccC
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELPELKGRERLG 207 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~--vv~vavlie~~~~~g~e~L~ 207 (216)
+.++++|+|+||+++||+|+.+++++|++.|+. -+.+++++..++ |.+++.
T Consensus 154 i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~--Gl~~i~ 206 (244)
T PLN02541 154 FPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPP--ALKKLS 206 (244)
T ss_pred cCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHH--HHHHHH
Confidence 445789999999999999999999999999997 566777777664 777764
No 66
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.08 E-value=3.4e-05 Score=65.68 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=70.9
Q ss_pred hHHHHHHhhcccCCCCCCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeEE----EEeeecccCccceeee
Q 027972 76 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGEVI----SEEYSLEYGKDVMEMH 151 (216)
Q Consensus 76 ~~~~~l~~~Ir~~PdfPk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~~i----a~~y~~eyG~~~l~i~ 151 (216)
.|.++|++-|-.-+. .+-|+|. .-+-.--.+|..+.+.+..+ +-|.-+..++ +++|.....++.+.+-
T Consensus 44 dr~~rlakDi~~~~g--~~~i~~l--cVlkG~ykF~adLve~l~n~----~s~~~~pmtvDFIR~kSY~n~~stg~iqii 115 (216)
T KOG3367|consen 44 DRVERLAKDIMKEIG--NKPIIFL--CVLKGGYKFFADLVERLKNR----NSDRPLPMTVDFIRAKSYCNDQSTGDIQII 115 (216)
T ss_pred hHHHHhhhhhhhccC--CCceEEE--EEecchhHHHHHHHHHHhhc----ccCCCcceeeeeeehhhhcCCcccCCceee
Confidence 345555544432111 1234553 23344556666666555442 2222222222 2334433334445444
Q ss_pred cCc-c--cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 152 VGA-V--QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 152 ~~~-i--~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
.+. + ..|++|||||||+.||.||...++.+++.+++.+.++.+..++.
T Consensus 116 g~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 116 GGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred cCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 332 2 58999999999999999999999999999999999999988764
No 67
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.08 E-value=4.6e-06 Score=79.26 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=36.6
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
.+|++||||||++|||.|+.+++++|+++|++.+.+.+.
T Consensus 336 ~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 336 FRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 479999999999999999999999999999999887766
No 68
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.04 E-value=5.5e-06 Score=78.88 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=35.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
.+|++||||||+++||.|+.+++++|+++||+.|.+.+
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999999999876665
No 69
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.01 E-value=6.8e-06 Score=78.91 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=35.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
.+|++||||||++|||.|+.+++++|+++||+.|.+.+-
T Consensus 354 i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~ 392 (474)
T PRK06388 354 ISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIG 392 (474)
T ss_pred ccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 479999999999999999999999999999997665543
No 70
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=97.97 E-value=8.9e-06 Score=78.16 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=35.6
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 194 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavl 194 (216)
..+|++||||||++|||.|+.+++++|+++||+.|.+.+-
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3579999999999999999999999999999998665543
No 71
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.85 E-value=0.00011 Score=62.02 Aligned_cols=44 Identities=30% Similarity=0.479 Sum_probs=39.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCC-EEEEEEEEEEccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGV-HVVECACVIELPE 199 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga-~vv~vavlie~~~ 199 (216)
..|++|++||||+-||.|+.+|++.|...|- ..+..+|+++++.
T Consensus 94 i~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGH 138 (179)
T COG2065 94 ITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGH 138 (179)
T ss_pred ccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCC
Confidence 5799999999999999999999999999884 6789999999864
No 72
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=97.72 E-value=4.5e-05 Score=73.95 Aligned_cols=37 Identities=32% Similarity=0.532 Sum_probs=33.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 192 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~va 192 (216)
.+|++||||||++|||.|+.++++.|+++|++.|.+.
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~r 401 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVR 401 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5899999999999999999999999999999975544
No 73
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=97.60 E-value=0.00022 Score=65.01 Aligned_cols=55 Identities=33% Similarity=0.330 Sum_probs=48.6
Q ss_pred cCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccC
Q 027972 152 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG 207 (216)
Q Consensus 152 ~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~ 207 (216)
.|. .+|+.++||||++.|+||+..+.+.|.+.||+.|...+.|.....+..+++.
T Consensus 209 VGD-v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~ 263 (316)
T KOG1448|consen 209 VGD-VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLN 263 (316)
T ss_pred Eec-cCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhh
Confidence 344 5899999999999999999999999999999999999999987766677764
No 74
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.00011 Score=63.84 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=48.8
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHc-CCEEEEEEEEEEccCcccccccC----CCCcee
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERV-GVHVVECACVIELPELKGRERLG----EKPLFV 213 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~-Ga~vv~vavlie~~~~~g~e~L~----~~pv~s 213 (216)
..+++.|+|+|-+++||+|+..+++.|++. |++-+.+.|++..++ |.+++. +++++.
T Consensus 121 ~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAape--Gi~~v~~~~p~v~I~t 182 (210)
T COG0035 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPE--GIKAVEKAHPDVEIYT 182 (210)
T ss_pred cccCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecHH--HHHHHHHhCCCCeEEE
Confidence 357899999999999999999999999999 889999999999886 776654 455553
No 75
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00021 Score=68.28 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=35.4
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
..+||||++|||-|-.|.|+...+++++++||+-|.+..
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEe
Confidence 368999999999999999999999999999999776554
No 76
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.27 E-value=0.0011 Score=56.98 Aligned_cols=50 Identities=38% Similarity=0.577 Sum_probs=41.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCC--EEEEEEEEEEccCcccccccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGV--HVVECACVIELPELKGRERLG 207 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga--~vv~vavlie~~~~~g~e~L~ 207 (216)
.++++|+|+|.+++||+|+.++++.|++.|. +.+-+++++..++ |.+++.
T Consensus 119 i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~--Gl~~l~ 170 (207)
T PF14681_consen 119 IENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPE--GLERLL 170 (207)
T ss_dssp GTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHH--HHHHHH
T ss_pred ccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHH--HHHHHH
Confidence 3789999999999999999999999999887 4666777776654 666653
No 77
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.03 E-value=0.0076 Score=51.88 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=65.9
Q ss_pred CCCCcEEEec---hhhhcCHHHHHHHHHHHHHHhcCC--CccEEEee---------EE----EEe--ee-----------
Q 027972 92 PKPGIMFQDI---TTLLLDTKAFRDTIDLFVERYKDK--NISVVAGE---------VI----SEE--YS----------- 140 (216)
Q Consensus 92 Pk~Gi~f~Di---t~Ll~dP~~~~~l~~~lae~~~~~--~iDvVvG~---------~i----a~~--y~----------- 140 (216)
||-+..|+.- .=+..+|..+..+...|++++.+. +.-+++|. .+ ... |-
T Consensus 14 pKR~fLfVSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~ 93 (191)
T PF15609_consen 14 PKRAFLFVSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVP 93 (191)
T ss_pred CCceeEEEecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCc
Confidence 4557777532 234458999999999999998763 34444431 11 100 10
Q ss_pred ------cccC--ccc-eeeec-CcccCCCEEEEEeccccccHHHHHHHHHHHHcCC-EEEEEEEEEEcc
Q 027972 141 ------LEYG--KDV-MEMHV-GAVQAGERALIVDDLVATGGTLSAAIRLLERVGV-HVVECACVIELP 198 (216)
Q Consensus 141 ------~eyG--~~~-l~i~~-~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga-~vv~vavlie~~ 198 (216)
.++. ++. ++... ..+...+.+++|||=+|||.|+...++.+++.-. +-+-++.+++-.
T Consensus 94 ~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~ 162 (191)
T PF15609_consen 94 PLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWR 162 (191)
T ss_pred cceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCC
Confidence 0110 111 22111 1334577999999999999999999999988644 345566667754
No 78
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=96.95 E-value=0.0012 Score=57.70 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=36.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 196 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie 196 (216)
.+|+.|+||||=++||.||.++++.+++.++.-+-+++=+.
T Consensus 122 ~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~ 162 (220)
T COG1926 122 LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVA 162 (220)
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccC
Confidence 58999999999999999999999999999998766665543
No 79
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.019 Score=54.40 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=34.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
..||||+||||-|--|.|+...+++++++||+-|....
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ri 391 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRI 391 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEe
Confidence 58999999999999999999999999999999876543
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=93.50 E-value=0.13 Score=46.53 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=49.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccCcccccccCCCCceec
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 214 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L~~~pv~sL 214 (216)
..|+-.++|||++..-.+..++.+.|++.||-.+.+.+.+..-..++...|+..|+...
T Consensus 245 vggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~idev 303 (354)
T KOG1503|consen 245 VGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEV 303 (354)
T ss_pred cCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCCCceE
Confidence 46788999999999999999999999999999999999998766566666776666543
No 81
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=87.15 E-value=2.1 Score=37.76 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=29.5
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 157 AGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 157 ~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
-.++||++=.+++||.|+..|++.|+++|...
T Consensus 188 ~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017|consen 188 TSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred cceeEEEEeeeecCCccHHHHHHHHHHcCCCc
Confidence 46789999999999999999999999999854
No 82
>PF15610 PRTase_3: PRTase ComF-like
Probab=85.34 E-value=1 Score=40.91 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=31.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
..|+.|+++|||-.||++-..+.+.+++.|++-
T Consensus 136 l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~ 168 (274)
T PF15610_consen 136 LSGKHLIFLDDIKITGSHEDKVRKILKEYGLEN 168 (274)
T ss_pred hCCcEEEEeccEEecCcHHHHHHHHHHHcCccc
Confidence 489999999999999999999999999999975
No 83
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=62.75 E-value=22 Score=32.17 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEEechhhhcCHHHHHHHHHHHHHHhcC--CCccE--EEeeEEEE--------------------eeecccCccceeee-
Q 027972 97 MFQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGEVISE--------------------EYSLEYGKDVMEMH- 151 (216)
Q Consensus 97 ~f~Dit~Ll~dP~~~~~l~~~lae~~~~--~~iDv--VvG~~ia~--------------------~y~~eyG~~~l~i~- 151 (216)
+|.|.+... .++.+..++..++..+-+ ..+|+ ++|+.+.- ...+.|+......+
T Consensus 64 i~~df~~~~-~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~ 142 (261)
T KOG1377|consen 64 IFFDFSLFN-SGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIKGLNRKLLKDHG 142 (261)
T ss_pred eeecccccc-cHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHHHHhhhccccCC
Confidence 777877554 799999999988876532 35677 77543221 00011211112211
Q ss_pred -cC----cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcc
Q 027972 152 -VG----AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 198 (216)
Q Consensus 152 -~~----~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~ 198 (216)
.| +-..++++|+.||+.++|.-+.+. .+.-..+-|.++.+..++.
T Consensus 143 egG~lllAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 143 EGGVLLLAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred CCceEEEEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 12 224678888888866666666555 4444567777877777766
No 84
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=49.38 E-value=45 Score=30.45 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=39.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEccC
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 199 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~~~ 199 (216)
..|++|+||.-=-+......++.++|+.+||++.+...+-+...
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~ 124 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFL 124 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhc
Confidence 58999999997777889999999999999999999999987653
No 85
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=42.06 E-value=30 Score=29.07 Aligned_cols=47 Identities=36% Similarity=0.458 Sum_probs=26.0
Q ss_pred CCCEEEEEeccccccHHHHHHH-HHHHHcCCEEEEEEEEEEccCccccccc
Q 027972 157 AGERALIVDDLVATGGTLSAAI-RLLERVGVHVVECACVIELPELKGRERL 206 (216)
Q Consensus 157 ~G~rVLIVDDVitTGgTl~aai-~lL~~~Ga~vv~vavlie~~~~~g~e~L 206 (216)
.|-+ |||||++.++.-+.... ++|. |..|.-+.+.++......|+.-
T Consensus 82 aG~~-VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~ 129 (174)
T PF07931_consen 82 AGNN-VIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA 129 (174)
T ss_dssp TT-E-EEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH
T ss_pred CCCC-EEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh
Confidence 4544 58899999987655555 5554 6666666666665554455543
No 86
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=35.01 E-value=80 Score=22.73 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=26.1
Q ss_pred CEEEEEeccccccHHHHHHHHHHHHc--CCEEEEEEEE
Q 027972 159 ERALIVDDLVATGGTLSAAIRLLERV--GVHVVECACV 194 (216)
Q Consensus 159 ~rVLIVDDVitTGgTl~aai~lL~~~--Ga~vv~vavl 194 (216)
..+.|++|...+=.++.++++.+++. +.+++.++..
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 45778888999999999999999987 4555555553
No 87
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=34.79 E-value=1.4e+02 Score=26.15 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.0
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 190 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~ 190 (216)
.+-+|++++|++.--+.-..+..+.++++..|++++.
T Consensus 119 ~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 119 DLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp TTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred cccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 4457999999977665557888999999999998754
No 88
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=34.64 E-value=94 Score=22.61 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=17.5
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcC
Q 027972 157 AGERALIVDDLVATGGTLSAAIRLLERVG 185 (216)
Q Consensus 157 ~G~rVLIVDDVitTGgTl~aai~lL~~~G 185 (216)
.+.+|||||| .-.......+.++..|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 4678999999 3344555556666677
No 89
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=34.58 E-value=2.2e+02 Score=22.17 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=28.9
Q ss_pred eeecccCccceeeecCcccCCCEEEEEeccccc--cH--HHHHHHHHHHHcCCEEE
Q 027972 138 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIRLLERVGVHVV 189 (216)
Q Consensus 138 ~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitT--Gg--Tl~aai~lL~~~Ga~vv 189 (216)
...+.|..++..++...-.+|++|+||-+.... -. -+.-+++.+++.|++-+
T Consensus 27 ~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i 82 (116)
T PF13793_consen 27 VETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRI 82 (116)
T ss_dssp EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEE
T ss_pred eEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEE
Confidence 334445445555554445679999999888764 11 34556788889999654
No 90
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.55 E-value=25 Score=28.19 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=34.9
Q ss_pred HHhhcccCCCCCCCCcEEEechhhhc-CHHHHHHHHHHHHHHhcCCCc
Q 027972 81 ISSAIRVIPDFPKPGIMFQDITTLLL-DTKAFRDTIDLFVERYKDKNI 127 (216)
Q Consensus 81 l~~~Ir~~PdfPk~Gi~f~Dit~Ll~-dP~~~~~l~~~lae~~~~~~i 127 (216)
+..+... -+.|.||..|.++..+.. ++..+.++++.|.+++.+.++
T Consensus 6 l~~ATsd-d~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~ 52 (122)
T cd03572 6 LSKATSD-DDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSP 52 (122)
T ss_pred HHHHhcC-CCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCC
Confidence 4444443 456779999999866655 579999999999999987653
No 91
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=33.73 E-value=1.1e+02 Score=20.88 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=25.6
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
+.+++.|+++++- |.....+...|++.|..-
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~ 77 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTN 77 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCccc
Confidence 3578889999887 788888999999998654
No 92
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=32.06 E-value=1e+02 Score=21.10 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.6
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
.+.+++.|++++ .+|.....+...|++.|-+-
T Consensus 52 ~~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 52 GLDKDKPVVVYC---RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCc
Confidence 346788899998 67888899999999999875
No 93
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.53 E-value=1e+02 Score=21.71 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=26.3
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
+.+++.++++.+ +|.+...+...|++.|..-
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~ 83 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTD 83 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCce
Confidence 457888999988 8889899999999999864
No 94
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.26 E-value=42 Score=27.28 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=17.1
Q ss_pred EEEEeccccccHHHHHHHHHHHH
Q 027972 161 ALIVDDLVATGGTLSAAIRLLER 183 (216)
Q Consensus 161 VLIVDDVitTGgTl~aai~lL~~ 183 (216)
=+|+|-+..||.|+.+|.++=++
T Consensus 193 diVlDpF~GSGTT~~aa~~l~R~ 215 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELGRR 215 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT-E
T ss_pred eeeehhhhccChHHHHHHHcCCe
Confidence 46799999999999999875443
No 95
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.84 E-value=1.1e+02 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=24.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
.++++|+++++ +|.....+...|++.|.+-
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCC
Confidence 56788999986 6777788888889999763
No 96
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=27.56 E-value=64 Score=33.62 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHHHcCCEEEEEEE
Q 027972 169 ATGGTLSAAIRLLERVGVHVVECAC 193 (216)
Q Consensus 169 tTGgTl~aai~lL~~~Ga~vv~vav 193 (216)
.|.|+-.+++-.+.++||.||.+++
T Consensus 771 DtsGagVAsMlaca~AGADVVDvA~ 795 (1176)
T KOG0369|consen 771 DTSGAGVASMLACALAGADVVDVAV 795 (1176)
T ss_pred CCccHHHHHHHHHHHcCCceeeeec
Confidence 3566777777788899999988765
No 97
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.99 E-value=1.3e+02 Score=20.60 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=29.4
Q ss_pred EEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEc
Q 027972 160 RALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 197 (216)
Q Consensus 160 rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~vavlie~ 197 (216)
+++|+.++ ||.-+...++.+++.|..+.--+++.+.
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~t 37 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTPT 37 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECCC
Confidence 57788887 8899999999999999977666666553
No 98
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=26.09 E-value=1e+02 Score=28.35 Aligned_cols=31 Identities=48% Similarity=0.768 Sum_probs=23.5
Q ss_pred cCcccCCCEEEEEeccccccHHHHHHHHHHHHcCCE
Q 027972 152 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVH 187 (216)
Q Consensus 152 ~~~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~ 187 (216)
...+.+|.||||||| |||=+.+|+ +++.|+.
T Consensus 196 ~aNV~~g~r~Lv~D~---~~GLv~aav--~eRmgg~ 226 (299)
T PF04189_consen 196 LANVHAGGRVLVVDD---CGGLVVAAV--AERMGGS 226 (299)
T ss_pred hcCCCCCCeEEEEeC---CCChHHHHH--HHHhCCC
Confidence 345678999999999 777776664 4777875
No 99
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=25.15 E-value=1e+02 Score=21.45 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=31.6
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHHcCCEE
Q 027972 155 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 188 (216)
Q Consensus 155 i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~v 188 (216)
+..|++++=|++.-..+-|...+.++++..+..+
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v 76 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPV 76 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEE
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcE
Confidence 7899999999999999999999999999998744
No 100
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=24.71 E-value=1.6e+02 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=27.4
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 191 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~v 191 (216)
.+.+|++|||. -.+|+.-..++++.+..|++++.+
T Consensus 135 ~~~~g~~VLI~---ga~g~vG~~aiqlAk~~G~~Vi~~ 169 (325)
T TIGR02825 135 GVKGGETVMVN---AAAGAVGSVVGQIAKLKGCKVVGA 169 (325)
T ss_pred CCCCCCEEEEe---CCccHHHHHHHHHHHHcCCEEEEE
Confidence 45689999884 346888888999999999986543
No 101
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=23.79 E-value=2.8e+02 Score=25.07 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=29.6
Q ss_pred eeecccCccceeeecCcccCCCEEEEE-eccccc-c---HHHHHHHHHHHHcCCEEE
Q 027972 138 EYSLEYGKDVMEMHVGAVQAGERALIV-DDLVAT-G---GTLSAAIRLLERVGVHVV 189 (216)
Q Consensus 138 ~y~~eyG~~~l~i~~~~i~~G~rVLIV-DDVitT-G---gTl~aai~lL~~~Ga~vv 189 (216)
-..+.|..+++.++...-..|+.|+|| ...... - --+.-+++.++++|++.+
T Consensus 27 ~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i 83 (308)
T TIGR01251 27 VEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSI 83 (308)
T ss_pred eEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeE
Confidence 334445444544444333478889888 443211 1 134566778888999743
No 102
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=22.35 E-value=1.9e+02 Score=25.45 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.2
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 191 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~v 191 (216)
.+.+|++|||. -++|+.-..++++++..|++++.+
T Consensus 148 ~~~~g~~VlI~---Ga~G~vG~~aiqlAk~~G~~Vi~~ 182 (338)
T cd08295 148 KPKKGETVFVS---AASGAVGQLVGQLAKLKGCYVVGS 182 (338)
T ss_pred CCCCCCEEEEe---cCccHHHHHHHHHHHHcCCEEEEE
Confidence 45789999985 457888889999999999986543
No 103
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=22.07 E-value=92 Score=30.98 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=26.8
Q ss_pred cccCCCEEEEE---eccccccHHHHHHHHHHHHc
Q 027972 154 AVQAGERALIV---DDLVATGGTLSAAIRLLERV 184 (216)
Q Consensus 154 ~i~~G~rVLIV---DDVitTGgTl~aai~lL~~~ 184 (216)
.|.+|+-|+|| |+++++|.++....++++..
T Consensus 496 ~IR~~dEV~vv~~~~~llavGra~lsg~em~~~~ 529 (540)
T TIGR00432 496 NIRANDEVLIVNADDELLATGKALLCAEEMMDLN 529 (540)
T ss_pred CCCCCCeEEEEcCCCcEEEEEehhcCHHHHHhhc
Confidence 45789999999 78999999999999987664
No 104
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=21.90 E-value=1.4e+02 Score=28.59 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=39.6
Q ss_pred cCCCEEEEEe----ccccccH------HHHHHHHHHHHcCCEEEEEEEEEEccCccccccc
Q 027972 156 QAGERALIVD----DLVATGG------TLSAAIRLLERVGVHVVECACVIELPELKGRERL 206 (216)
Q Consensus 156 ~~G~rVLIVD----DVitTGg------Tl~aai~lL~~~Ga~vv~vavlie~~~~~g~e~L 206 (216)
.+++|+|||| |+-.=|. ++...++-|+++|+++++.=++.+.+...|.+.|
T Consensus 57 ~~d~rIlIV~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~qp~aIgLDi~r~~P~~~~~~~L 117 (400)
T COG4252 57 PPDDRILIVAIDEQDLESLGQWPWPRAALARLLDKLAAAQPRAIGLDIYRDLPSSPGDRAL 117 (400)
T ss_pred CCCCCeEEEEecHHHHHhcCCCCCCHHHHHHHHHHHHhcCCcEEEEEEeecCCCCcccHHH
Confidence 3477777775 5555554 8899999999999999999999998865555554
No 105
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=21.82 E-value=3.3e+02 Score=27.44 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=53.5
Q ss_pred CCCCcEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeEEEEeeecccCccceeeecCcccCCCEEEEEecccccc
Q 027972 92 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATG 171 (216)
Q Consensus 92 Pk~Gi~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~~ia~~y~~eyG~~~l~i~~~~i~~G~rVLIVDDVitTG 171 (216)
.+++-...|+..+-.. +++.+.+.+.....++|-|..++-.....+ +-....+-+|+.++++.+--+..
T Consensus 21 ~~~~~~vtDv~SvK~~------i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~-----~~a~~~Lf~~~~~il~p~~~~~~ 89 (673)
T PRK11861 21 LDASTIVTDAGSTKSD------VVAAARAALGARIGQFVPGHPIAGRESSGV-----DAALADLYVGRNVVLCALPENAP 89 (673)
T ss_pred CCCCcEEEecCcccHH------HHHHHHHhccccCCeEEecCCcCcCcchhh-----hhhChhHhCCCeEEEecCCCCCH
Confidence 3567777788776532 333333334332234555555542222111 11112445899999998877778
Q ss_pred HHHHHHHHHHHHcCCEEEE
Q 027972 172 GTLSAAIRLLERVGVHVVE 190 (216)
Q Consensus 172 gTl~aai~lL~~~Ga~vv~ 190 (216)
..+..+.++++..|++++.
T Consensus 90 ~~~~~~~~l~~~~Ga~~~~ 108 (673)
T PRK11861 90 DALARVEAMWRAARADVRA 108 (673)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 8899999999999998753
No 106
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=21.30 E-value=2.1e+02 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=27.6
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 191 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~v 191 (216)
.+.+|++|||. -.+|+.-..++++.+..|++++.+
T Consensus 140 ~~~~g~~vlI~---ga~g~vG~~aiqlA~~~G~~vi~~ 174 (329)
T cd08294 140 KPKAGETVVVN---GAAGAVGSLVGQIAKIKGCKVIGC 174 (329)
T ss_pred CCCCCCEEEEe---cCccHHHHHHHHHHHHcCCEEEEE
Confidence 45689999885 346888889999999999986543
No 107
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.28 E-value=1.9e+02 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=26.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEE
Q 027972 156 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 191 (216)
Q Consensus 156 ~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~vv~v 191 (216)
.+|++|+|+-|- .|-.--+..+.++..|++|+..
T Consensus 3 l~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs 36 (150)
T PF04723_consen 3 LEGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFS 36 (150)
T ss_pred cCCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEE
Confidence 579999999985 4555666667778899998743
No 108
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=21.19 E-value=1.9e+02 Score=25.39 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=26.4
Q ss_pred cccCCCEEEEEeccccccHHHHHHHHHHHHcCCE-EEE
Q 027972 154 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVH-VVE 190 (216)
Q Consensus 154 ~i~~G~rVLIVDDVitTGgTl~aai~lL~~~Ga~-vv~ 190 (216)
.+.+|++|+|. ..|+.-..++++++..|++ ++.
T Consensus 160 ~~~~g~~vlV~----G~G~vG~~~~~~ak~~G~~~vi~ 193 (339)
T cd08239 160 GVSGRDTVLVV----GAGPVGLGALMLARALGAEDVIG 193 (339)
T ss_pred CCCCCCEEEEE----CCCHHHHHHHHHHHHcCCCEEEE
Confidence 34679999997 4588888899999999998 543
No 109
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.69 E-value=1.9e+02 Score=21.45 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=31.3
Q ss_pred cEEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEeeEEEEe
Q 027972 96 IMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGEVISEE 138 (216)
Q Consensus 96 i~f~Dit~Ll~dP~~~~~l~~~lae~~~~~~iDvVvG~~ia~~ 138 (216)
+.|.|+-.--.| -.+++.+.|.++-+.++.|.|+|..+..+
T Consensus 14 i~yl~iv~~~~~--d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 14 LYYLGIVSTESD--NVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred EEEEEEEEEecC--CHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 377776543333 67788899999998899999999877655
Done!