Query 027973
Match_columns 216
No_of_seqs 198 out of 1653
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 7E-33 2.4E-37 219.1 8.9 131 3-136 9-142 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 9.9E-26 3.4E-30 216.6 14.3 128 3-135 141-280 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 3.3E-25 1.1E-29 217.5 14.6 128 3-135 452-592 (1330)
4 4dov_A ORC1, origin recognitio 99.9 2.1E-23 7.1E-28 159.8 17.1 122 8-130 21-156 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.9 1.8E-21 6.1E-26 187.2 12.8 129 5-135 319-500 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.8 8.3E-21 2.8E-25 180.3 8.8 125 6-134 43-178 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 1.2E-19 4.1E-24 178.3 10.7 127 6-134 632-810 (1330)
8 1wep_A PHF8; structural genomi 99.7 8.8E-18 3E-22 115.6 3.5 64 129-192 2-65 (79)
9 2fl7_A Regulatory protein SIR3 99.6 3.4E-15 1.2E-19 120.8 11.3 121 14-135 44-189 (232)
10 3kqi_A GRC5, PHD finger protei 99.6 2.7E-17 9.2E-22 112.1 -0.9 57 136-192 7-63 (75)
11 1m4z_A Origin recognition comp 99.6 3.5E-15 1.2E-19 121.1 11.2 121 14-135 44-189 (238)
12 1we9_A PHD finger family prote 99.6 2.9E-16 9.8E-21 103.7 2.8 56 137-192 4-60 (64)
13 3o70_A PHD finger protein 13; 99.5 4.9E-15 1.7E-19 98.7 1.7 55 133-190 13-67 (68)
14 3o7a_A PHD finger protein 13 v 99.5 5.4E-15 1.8E-19 93.5 1.4 49 138-189 3-51 (52)
15 1wee_A PHD finger family prote 99.5 1.2E-14 4E-19 98.1 1.7 55 136-191 13-67 (72)
16 2kgg_A Histone demethylase jar 99.5 1.8E-14 6.3E-19 91.0 2.3 47 141-188 5-52 (52)
17 1wem_A Death associated transc 99.4 8.1E-15 2.8E-19 100.0 -0.8 56 136-192 13-72 (76)
18 1wew_A DNA-binding family prot 99.4 2.2E-14 7.6E-19 98.3 -0.1 56 137-193 14-75 (78)
19 2vpb_A Hpygo1, pygopus homolog 99.4 8.9E-15 3.1E-19 96.5 -2.6 51 138-188 8-64 (65)
20 2jmi_A Protein YNG1, ING1 homo 99.4 4.1E-14 1.4E-18 99.0 0.1 49 136-189 23-75 (90)
21 1wen_A Inhibitor of growth fam 99.3 2.2E-13 7.4E-18 91.4 2.0 53 136-193 13-68 (71)
22 2rsd_A E3 SUMO-protein ligase 99.3 2.7E-13 9.2E-18 90.4 1.5 53 137-190 8-65 (68)
23 3c6w_A P28ING5, inhibitor of g 99.3 1.6E-13 5.5E-18 88.8 -0.6 49 137-190 7-58 (59)
24 2xb1_A Pygopus homolog 2, B-ce 99.3 2.6E-13 8.9E-18 98.0 0.3 52 141-192 6-63 (105)
25 1weu_A Inhibitor of growth fam 99.3 4.1E-13 1.4E-17 94.1 1.2 53 136-193 33-88 (91)
26 1x4i_A Inhibitor of growth pro 99.3 1.1E-13 3.8E-18 92.6 -1.9 51 137-192 4-57 (70)
27 3kv4_A PHD finger protein 8; e 99.3 1.5E-13 5.1E-18 122.1 -2.0 56 137-192 3-58 (447)
28 3kv5_D JMJC domain-containing 99.3 2.8E-13 9.4E-18 121.9 -0.5 60 133-192 31-90 (488)
29 2g6q_A Inhibitor of growth pro 99.3 2.6E-13 8.8E-18 88.7 -0.6 50 137-191 9-61 (62)
30 2k16_A Transcription initiatio 99.2 6.6E-13 2.3E-17 90.2 0.0 55 137-193 16-71 (75)
31 2vnf_A ING 4, P29ING4, inhibit 99.2 5.7E-13 2E-17 86.5 -0.7 49 137-190 8-59 (60)
32 2ri7_A Nucleosome-remodeling f 99.2 5.2E-13 1.8E-17 104.9 -1.8 56 137-192 6-61 (174)
33 3lqh_A Histone-lysine N-methyl 99.2 3.7E-12 1.3E-16 100.5 0.6 54 139-192 2-65 (183)
34 2lv9_A Histone-lysine N-methyl 99.1 2.9E-11 1E-15 86.1 3.0 52 137-191 26-77 (98)
35 3pur_A Lysine-specific demethy 99.0 1.4E-10 4.8E-15 103.9 2.7 45 148-192 52-96 (528)
36 3rsn_A SET1/ASH2 histone methy 98.5 3.8E-08 1.3E-12 76.6 3.7 55 137-191 3-60 (177)
37 1f62_A Transcription factor WS 98.4 3.2E-08 1.1E-12 61.7 0.2 46 143-190 5-50 (51)
38 1xwh_A Autoimmune regulator; P 98.4 1.4E-07 4.6E-12 62.1 2.5 48 140-192 9-57 (66)
39 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 1E-07 3.4E-12 71.0 1.6 40 153-192 1-46 (140)
40 3ask_A E3 ubiquitin-protein li 98.3 5.6E-06 1.9E-10 66.9 10.9 46 143-189 179-224 (226)
41 2ku3_A Bromodomain-containing 98.3 6.6E-08 2.2E-12 64.5 -1.1 52 137-191 15-67 (71)
42 2puy_A PHD finger protein 21A; 98.2 1.2E-07 4.3E-12 61.1 -0.1 47 143-194 10-56 (60)
43 2l5u_A Chromodomain-helicase-D 98.2 1.7E-07 5.9E-12 60.6 -0.0 48 138-190 10-58 (61)
44 3asl_A E3 ubiquitin-protein li 98.2 4.5E-07 1.5E-11 60.3 1.9 47 143-190 23-69 (70)
45 2l43_A N-teminal domain from h 98.2 8.4E-08 2.9E-12 66.8 -2.4 53 137-192 24-77 (88)
46 2yt5_A Metal-response element- 98.2 5.7E-07 2E-11 59.0 1.7 53 140-192 8-63 (66)
47 2yql_A PHD finger protein 21A; 98.1 5.7E-07 2E-11 57.1 1.2 45 140-189 10-55 (56)
48 2e6r_A Jumonji/ARID domain-con 98.1 4.4E-07 1.5E-11 63.6 0.5 49 141-191 18-67 (92)
49 2e6s_A E3 ubiquitin-protein li 98.1 1.6E-06 5.6E-11 58.6 3.3 46 143-189 31-76 (77)
50 1wev_A Riken cDNA 1110020M19; 98.1 2E-06 6.8E-11 59.7 2.9 59 141-199 19-81 (88)
51 3shb_A E3 ubiquitin-protein li 98.0 3.1E-06 1.1E-10 57.2 2.3 39 151-189 38-76 (77)
52 1mm2_A MI2-beta; PHD, zinc fin 97.9 3.3E-06 1.1E-10 54.5 2.0 48 139-191 9-57 (61)
53 4gne_A Histone-lysine N-methyl 97.9 2.9E-06 1E-10 60.9 1.1 46 137-188 13-60 (107)
54 2lri_C Autoimmune regulator; Z 97.9 2.7E-06 9.2E-11 55.8 0.5 38 152-190 22-59 (66)
55 3v43_A Histone acetyltransfera 97.8 1E-05 3.5E-10 58.6 2.4 46 143-189 66-111 (112)
56 2kwj_A Zinc finger protein DPF 97.7 5.6E-06 1.9E-10 60.2 0.7 48 143-192 63-110 (114)
57 1fp0_A KAP-1 corepressor; PHD 97.7 3.7E-05 1.3E-09 53.1 4.4 48 140-192 26-74 (88)
58 3o36_A Transcription intermedi 97.7 4.2E-05 1.4E-09 60.0 4.9 40 152-192 14-53 (184)
59 2ysm_A Myeloid/lymphoid or mix 97.5 2.3E-05 7.9E-10 56.5 1.4 48 143-192 59-106 (111)
60 4bbq_A Lysine-specific demethy 97.5 2.2E-05 7.7E-10 57.1 0.7 41 151-191 72-115 (117)
61 3u5n_A E3 ubiquitin-protein li 97.4 8.8E-05 3E-09 59.3 3.7 45 143-192 12-56 (207)
62 2ysm_A Myeloid/lymphoid or mix 97.0 0.00035 1.2E-08 50.2 2.9 44 143-188 12-55 (111)
63 2ro1_A Transcription intermedi 96.8 0.00093 3.2E-08 52.6 4.0 40 152-192 12-51 (189)
64 2kwj_A Zinc finger protein DPF 96.3 0.002 6.9E-08 46.5 2.4 37 151-188 20-59 (114)
65 3v43_A Histone acetyltransfera 96.2 0.00072 2.5E-08 48.7 -0.3 38 151-188 23-62 (112)
66 3ql9_A Transcriptional regulat 89.9 0.015 5.2E-07 42.8 -3.2 41 151-191 66-112 (129)
67 2lbm_A Transcriptional regulat 89.4 0.055 1.9E-06 40.4 -0.5 40 151-190 72-117 (142)
68 1wil_A KIAA1045 protein; ring 83.5 0.061 2.1E-06 36.3 -2.7 46 143-190 20-76 (89)
69 1iym_A EL5; ring-H2 finger, ub 81.4 0.33 1.1E-05 29.2 0.2 43 143-190 10-52 (55)
70 3zzs_A Transcription attenuati 80.2 4.7 0.00016 25.2 5.2 52 50-105 8-59 (65)
71 4hcz_A PHD finger protein 1; p 79.0 2.3 7.8E-05 26.4 3.4 29 22-52 3-31 (58)
72 2l7p_A Histone-lysine N-methyl 76.2 1.5 5.2E-05 30.5 2.3 36 149-186 23-58 (100)
73 1weq_A PHD finger protein 7; s 75.8 1.7 5.9E-05 29.3 2.5 48 138-189 25-78 (85)
74 2m0o_A PHD finger protein 1; t 75.6 2.8 9.4E-05 27.6 3.3 29 21-51 25-53 (79)
75 2xk0_A Polycomb protein PCL; t 73.7 5.8 0.0002 25.4 4.4 27 21-49 14-40 (69)
76 1gtf_A Trp RNA-binding attenua 73.5 7.2 0.00025 24.9 4.7 47 59-105 17-63 (74)
77 3zte_A Tryptophan operon RNA-b 73.4 6.8 0.00023 25.4 4.7 47 59-105 21-67 (78)
78 2eqj_A Metal-response element- 69.4 6 0.00021 25.2 3.7 29 22-52 13-41 (66)
79 2ep4_A Ring finger protein 24; 68.7 1.4 4.8E-05 28.1 0.7 46 141-192 18-63 (74)
80 2ro0_A Histone acetyltransfera 67.6 9.7 0.00033 25.9 4.8 29 22-53 23-51 (92)
81 2gfu_A DNA mismatch repair pro 67.3 4.2 0.00014 29.6 3.1 44 21-66 21-69 (134)
82 2d8s_A Cellular modulator of i 66.2 2.5 8.4E-05 28.0 1.5 52 139-193 16-70 (80)
83 2ecm_A Ring finger and CHY zin 65.2 1.3 4.5E-05 26.3 0.0 44 143-191 10-53 (55)
84 2a7y_A Hypothetical protein RV 64.6 6.2 0.00021 26.3 3.2 40 23-64 6-45 (83)
85 3llr_A DNA (cytosine-5)-methyl 62.8 4.5 0.00016 30.3 2.6 44 21-66 15-60 (154)
86 2ect_A Ring finger protein 126 62.7 4.1 0.00014 26.0 2.1 46 142-193 19-64 (78)
87 2l8d_A Lamin-B receptor; DNA b 62.4 7 0.00024 24.8 3.0 28 21-49 8-35 (66)
88 2dig_A Lamin-B receptor; tudor 61.9 7.7 0.00026 24.7 3.1 28 21-49 11-38 (68)
89 4fu6_A PC4 and SFRS1-interacti 60.5 4.2 0.00014 30.3 2.1 28 21-50 21-48 (153)
90 2lq6_A Bromodomain-containing 58.9 2.4 8.3E-05 28.6 0.4 33 136-170 14-49 (87)
91 2e61_A Zinc finger CW-type PWW 57.6 7.5 0.00026 25.0 2.6 32 151-185 15-48 (69)
92 2e5p_A Protein PHF1, PHD finge 57.4 16 0.00056 23.2 4.1 29 21-51 8-36 (68)
93 1ri0_A Hepatoma-derived growth 56.5 3.9 0.00013 28.8 1.2 43 20-64 17-60 (110)
94 1khc_A DNA cytosine-5 methyltr 56.1 4.4 0.00015 30.1 1.5 44 20-65 9-54 (147)
95 1wgs_A MYST histone acetyltran 52.8 25 0.00087 25.4 5.1 30 21-52 11-40 (133)
96 2l89_A PWWP domain-containing 51.8 20 0.0007 24.8 4.4 43 21-65 4-52 (108)
97 2e5q_A PHD finger protein 19; 51.6 8.8 0.0003 24.1 2.1 29 21-51 6-34 (63)
98 4a4f_A SurviVal of motor neuro 51.3 25 0.00085 21.8 4.3 29 21-50 7-35 (64)
99 3p8d_A Medulloblastoma antigen 50.7 15 0.0005 23.5 3.1 28 22-51 6-33 (67)
100 1v87_A Deltex protein 2; ring- 49.7 2.2 7.4E-05 29.7 -1.1 38 156-193 57-94 (114)
101 3qby_A Hepatoma-derived growth 49.5 8.4 0.00029 26.2 2.0 27 21-49 4-30 (94)
102 1nz9_A Transcription antitermi 48.1 17 0.00058 22.0 3.1 42 22-67 4-45 (58)
103 2daq_A WHSC1L1 protein, isofor 47.1 8.2 0.00028 26.9 1.6 30 18-49 4-33 (110)
104 2rnz_A Histone acetyltransfera 46.9 31 0.001 23.5 4.5 28 22-52 25-52 (94)
105 2ct0_A Non-SMC element 1 homol 46.7 6.6 0.00022 25.6 1.0 48 137-192 14-63 (74)
106 3bcw_A Uncharacterized protein 43.3 23 0.00077 25.1 3.6 18 19-36 87-104 (123)
107 2l0b_A E3 ubiquitin-protein li 41.6 1.7 5.8E-05 29.2 -2.6 46 141-192 43-88 (91)
108 2e6z_A Transcription elongatio 41.2 13 0.00045 22.8 1.7 41 21-67 6-46 (59)
109 2ecl_A Ring-box protein 2; RNF 40.3 0.96 3.3E-05 29.8 -4.0 34 154-192 42-75 (81)
110 1o5u_A Novel thermotoga mariti 40.1 24 0.00081 24.0 3.1 22 15-36 63-85 (101)
111 2kiz_A E3 ubiquitin-protein li 38.9 5.4 0.00018 24.8 -0.4 45 143-193 19-63 (69)
112 2f5k_A MORF-related gene 15 is 37.8 43 0.0015 23.1 4.1 28 21-51 21-48 (102)
113 4rxn_A Rubredoxin; electron tr 35.7 20 0.00069 21.8 1.9 37 155-191 4-46 (54)
114 2opk_A Hypothetical protein; p 35.5 24 0.00082 24.1 2.6 21 15-35 67-89 (112)
115 2eko_A Histone acetyltransfera 35.3 35 0.0012 22.8 3.2 31 22-52 9-41 (87)
116 6rxn_A Rubredoxin; electron tr 35.1 19 0.00064 21.2 1.6 35 155-190 5-39 (46)
117 2equ_A PHD finger protein 20-l 34.3 38 0.0013 21.9 3.2 28 21-50 8-35 (74)
118 1x4j_A Ring finger protein 38; 34.2 4.1 0.00014 25.9 -1.5 46 141-192 26-71 (75)
119 1mhn_A SurviVal motor neuron p 34.1 61 0.0021 19.5 4.1 27 22-50 3-30 (59)
120 1yk4_A Rubredoxin, RD; electro 34.1 26 0.00087 21.1 2.2 12 179-190 33-44 (52)
121 1vq8_T 50S ribosomal protein L 33.4 55 0.0019 23.3 4.2 29 21-51 41-69 (120)
122 3qii_A PHD finger protein 20; 33.2 38 0.0013 22.6 3.1 29 21-51 20-48 (85)
123 3lwc_A Uncharacterized protein 33.2 24 0.00081 24.7 2.3 21 15-35 73-93 (119)
124 2yw8_A RUN and FYVE domain-con 32.6 12 0.00039 24.7 0.5 60 133-192 13-74 (82)
125 2lcc_A AT-rich interactive dom 32.5 21 0.00072 23.2 1.7 30 22-51 5-35 (76)
126 3k1l_B Fancl; UBC, ring, RWD, 31.9 8.3 0.00028 33.0 -0.4 50 143-192 313-372 (381)
127 1joc_A EEA1, early endosomal a 31.5 18 0.0006 25.9 1.3 57 133-189 63-121 (125)
128 3e9g_A Chromatin modification- 31.3 1.1E+02 0.0039 21.9 5.6 30 22-54 7-36 (130)
129 1s24_A Rubredoxin 2; electron 30.6 26 0.0009 23.5 2.0 39 153-191 34-78 (87)
130 4a0k_B E3 ubiquitin-protein li 30.6 11 0.00036 26.8 0.0 29 158-191 82-110 (117)
131 3s6w_A Tudor domain-containing 29.7 53 0.0018 19.3 3.2 27 23-51 2-29 (54)
132 3p8b_B Transcription antitermi 29.6 45 0.0015 24.3 3.4 43 21-67 90-132 (152)
133 2v3b_B Rubredoxin 2, rubredoxi 29.6 27 0.00092 21.2 1.7 37 155-191 4-46 (55)
134 4axo_A EUTQ, ethanolamine util 29.4 29 0.00098 25.7 2.2 21 15-35 98-118 (151)
135 1dx8_A Rubredoxin; electron tr 29.3 31 0.0011 22.1 2.1 38 155-192 8-51 (70)
136 3j21_U 50S ribosomal protein L 28.8 66 0.0023 22.9 4.0 30 21-52 44-73 (121)
137 1e8j_A Rubredoxin; iron-sulfur 28.8 34 0.0012 20.5 2.1 12 179-190 34-45 (52)
138 2zjr_R 50S ribosomal protein L 28.4 30 0.001 24.5 2.1 29 22-52 15-43 (115)
139 2x3w_D Syndapin I, protein kin 28.1 15 0.00053 21.9 0.5 26 20-45 19-44 (60)
140 3m9q_A Protein MALE-specific l 28.0 1E+02 0.0035 21.1 4.7 37 16-52 13-51 (101)
141 2oqk_A Putative translation in 27.6 46 0.0016 23.4 3.0 26 23-50 71-96 (117)
142 2kn9_A Rubredoxin; metalloprot 27.5 27 0.00093 23.1 1.6 39 154-192 27-71 (81)
143 1qd7_I S17 ribosomal protein; 27.3 1.4E+02 0.0048 19.9 5.4 37 13-49 40-76 (89)
144 2pyt_A Ethanolamine utilizatio 27.1 34 0.0012 24.4 2.2 21 15-35 89-109 (133)
145 3nw0_A Non-structural maintena 27.0 16 0.00053 29.3 0.4 47 139-191 181-227 (238)
146 2ct2_A Tripartite motif protei 26.7 6.3 0.00022 25.6 -1.7 47 143-192 20-67 (88)
147 2qqr_A JMJC domain-containing 26.7 1.3E+02 0.0045 21.2 5.2 27 22-50 5-31 (118)
148 2ozj_A Cupin 2, conserved barr 26.4 42 0.0014 22.5 2.6 22 15-36 72-93 (114)
149 1zbd_B Rabphilin-3A; G protein 26.4 19 0.00064 26.2 0.7 51 141-192 57-109 (134)
150 1x4u_A Zinc finger, FYVE domai 25.9 74 0.0025 20.7 3.6 61 132-192 7-77 (84)
151 3v2d_Y 50S ribosomal protein L 25.8 65 0.0022 22.5 3.4 30 21-52 5-34 (110)
152 2ckl_B Ubiquitin ligase protei 25.6 15 0.00052 27.1 0.1 42 143-191 59-100 (165)
153 2zkr_t 60S ribosomal protein L 25.5 65 0.0022 23.7 3.5 30 21-52 47-77 (145)
154 1k1z_A VAV; SH3, proto-oncogen 25.4 72 0.0025 20.0 3.5 27 19-45 33-59 (78)
155 3oa6_A MALE-specific lethal 3 25.3 76 0.0026 22.2 3.7 32 21-52 18-51 (110)
156 3lrq_A E3 ubiquitin-protein li 24.3 11 0.00037 25.5 -0.9 43 143-192 27-69 (100)
157 3m9p_A MALE-specific lethal 3 24.0 91 0.0031 21.8 3.9 35 18-52 15-51 (110)
158 1chc_A Equine herpes virus-1 r 24.0 35 0.0012 20.6 1.6 42 143-192 10-51 (68)
159 2jwo_A RAG-2, V(D)J recombinat 23.8 47 0.0016 21.6 2.2 34 153-186 37-75 (82)
160 4i4a_A Similar to unknown prot 23.3 1.3E+02 0.0044 20.2 4.8 21 15-35 68-88 (128)
161 4e2q_A Ureidoglycine aminohydr 23.3 2.8E+02 0.0095 22.3 7.3 57 15-90 104-161 (266)
162 2jt4_A Cytoskeleton assembly c 23.1 45 0.0016 20.4 2.1 26 20-45 22-47 (71)
163 2do3_A Transcription elongatio 22.9 79 0.0027 20.1 3.1 29 21-51 16-44 (69)
164 1z2q_A LM5-1; membrane protein 22.9 63 0.0022 21.0 2.8 61 132-192 14-78 (84)
165 2b8m_A Hypothetical protein MJ 22.9 69 0.0024 21.4 3.2 21 15-35 61-82 (117)
166 2ea6_A Ring finger protein 4; 22.9 7.6 0.00026 23.8 -1.8 33 155-192 35-67 (69)
167 2d8t_A Dactylidin, ring finger 22.8 7.1 0.00024 24.5 -2.0 41 143-192 20-60 (71)
168 2j5u_A MREC protein; bacterial 22.8 2E+02 0.0069 22.8 6.4 42 21-62 168-211 (255)
169 1v70_A Probable antibiotics sy 22.7 49 0.0017 21.2 2.3 20 16-35 64-83 (105)
170 3iz5_Y 60S ribosomal protein L 22.0 1.1E+02 0.0037 22.6 4.1 30 21-52 47-76 (150)
171 2lrq_A Protein MRG15, NUA4 com 27.1 20 0.00067 23.9 0.0 28 21-51 11-38 (85)
172 2vpv_A Protein MIF2, MIF2P; nu 21.6 49 0.0017 24.8 2.2 21 15-35 124-144 (166)
173 3u5e_Y L33, YL33, 60S ribosoma 21.4 1E+02 0.0034 22.1 3.8 30 21-52 48-77 (127)
174 2i45_A Hypothetical protein; n 21.4 50 0.0017 21.8 2.1 21 15-35 62-83 (107)
175 1at0_A 17-hedgehog; developmen 21.3 82 0.0028 22.7 3.4 28 22-50 91-118 (145)
176 2pfw_A Cupin 2, conserved barr 21.1 61 0.0021 21.5 2.6 21 15-35 68-88 (116)
177 3r8s_U 50S ribosomal protein L 21.1 84 0.0029 21.6 3.2 28 22-51 3-30 (102)
178 1bor_A Transcription factor PM 20.8 43 0.0015 19.7 1.5 26 159-192 23-48 (56)
179 3fjs_A Uncharacterized protein 20.6 45 0.0015 22.7 1.8 21 15-35 70-90 (114)
180 2a28_A BZZ1 protein; SH3 domai 20.3 53 0.0018 18.9 1.8 26 20-45 16-41 (54)
181 3dpl_R Ring-box protein 1; ubi 20.1 6.5 0.00022 27.3 -2.8 32 156-192 69-100 (106)
182 2d8h_A SH3YL1 protein; SH3 dom 20.1 83 0.0028 19.8 2.9 27 19-45 32-59 (80)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.98 E-value=7e-33 Score=219.08 Aligned_cols=131 Identities=27% Similarity=0.395 Sum_probs=102.7
Q ss_pred CCCCCceeeeeEEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCCCcccccCCCe
Q 027973 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (216)
Q Consensus 3 ~~~~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~E 82 (216)
..++++.+|+++.++|. +|++||+|||.+++.+.++|||+|++||++.+| +++++|+|||||+||.++....+.+||
T Consensus 9 ~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g-~~~v~v~WfyRPeet~~~~~~~~~~~E 85 (174)
T 1w4s_A 9 LSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAG-EKWLYGCWFYRPNETFHLATRKFLEKE 85 (174)
T ss_dssp -------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTC-CEEEEEEEEECGGGSCCCTTCEEETTE
T ss_pred ccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCC-CEEEEEEEecCHHHcccccCCcCCCCe
Confidence 35678889999999987 999999999999886678999999999999888 899999999999999987655567999
Q ss_pred EEEeCcccccccccEeeeeEEeeccccccccC---CCCCceEEeeeecCCCCCCCCC
Q 027973 83 VFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA---VGNDDFFCRFEYNSSSGAFNPD 136 (216)
Q Consensus 83 Lf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~ff~r~~yd~~~~~f~p~ 136 (216)
||+|++.|++|+++|.|||.|++.++|.++.+ ...++|||++.||..+++|.+.
T Consensus 86 vF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i 142 (174)
T 1w4s_A 86 VFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKI 142 (174)
T ss_dssp EEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEEC
T ss_pred eEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccC
Confidence 99999999999999999999999999987653 2346799999999999999853
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.93 E-value=9.9e-26 Score=216.61 Aligned_cols=128 Identities=20% Similarity=0.396 Sum_probs=113.1
Q ss_pred CCCCCceeeeeEEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCCCcccccCCCe
Q 027973 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (216)
Q Consensus 3 ~~~~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~E 82 (216)
+++.++.+|.++.++|. +|++||+|||.++++..++|||+|++||++.++ +++|+|+|||||+||.+++. ++++|
T Consensus 141 k~~~~~~~Y~s~~v~g~--~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g-~k~~~v~Wf~rp~ET~lg~~--~~~~E 215 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDAE--TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSN-GQMFHAHWFCAGTDTVLGAT--SDPLE 215 (1002)
T ss_dssp CCBTTEEECSEEEETTE--EEETTCEEEECBSSTTSCCEEEEEEEEEEETTT-EEEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred ccccCceeeeEEEECCE--EEecCCEEEEecCCCCCCceEEEEEEEeecCCC-CeEEEEEEEecchhcccccC--CCCCc
Confidence 45678999999999886 999999999999988788899999999999888 89999999999999999988 78999
Q ss_pred EEEeCcccccccccEeeeeEEeeccc---ccccc---------CCCCCceEEeeeecCCCCCCCC
Q 027973 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKLD---------AVGNDDFFCRFEYNSSSGAFNP 135 (216)
Q Consensus 83 Lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~~---------~~~~~~ff~r~~yd~~~~~f~p 135 (216)
||+|+++|.+++++|.|||.|++.+. |.... ...+++|||++.|++.+++|..
T Consensus 216 lFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 216 LFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred eEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 99999999999999999999998644 32111 1235799999999999999984
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.92 E-value=3.3e-25 Score=217.48 Aligned_cols=128 Identities=22% Similarity=0.413 Sum_probs=109.9
Q ss_pred CCCCCceeeeeEEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCCCcccccCCCe
Q 027973 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (216)
Q Consensus 3 ~~~~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~E 82 (216)
+...++.+|.++.++|. +|++||+|||.+++++.++|||+|++||++.+| ..||+|+|||||+||.++.. ++++|
T Consensus 452 k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg-~~~~~~~WfyRp~ETvlg~~--~~~rE 526 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNG-QMMFHAHWFCAGTDTVLGAT--SDPLE 526 (1330)
T ss_dssp CCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTC-CEEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred eccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCC-CEEEEEEEEEchHHcccccc--cCCCe
Confidence 45678999999999997 999999999999886678999999999999888 89999999999999998876 78999
Q ss_pred EEEeCcccccccccEeeeeEEeeccc---ccccc----------CCCCCceEEeeeecCCCCCCCC
Q 027973 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKLD----------AVGNDDFFCRFEYNSSSGAFNP 135 (216)
Q Consensus 83 Lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~~----------~~~~~~ff~r~~yd~~~~~f~p 135 (216)
||+|+++|++|+++|.|||.|++.++ |..+. ....++|||++.||+..++|..
T Consensus 527 lFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~ 592 (1330)
T 3av4_A 527 LFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592 (1330)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEEC
T ss_pred EEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCC
Confidence 99999999999999999999999665 53221 1245689999999999999883
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.91 E-value=2.1e-23 Score=159.78 Aligned_cols=122 Identities=22% Similarity=0.352 Sum_probs=102.6
Q ss_pred ceeeeeEEEecCC---cEEccCCEEEEecCCCCCCCeEEEEEEEEecC--CCCeEEEEEEEEeecCCCCCCcccc----c
Q 027973 8 RRTLESYTVKSIS---KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYYRPEESIGGRRQF----H 78 (216)
Q Consensus 8 ~~~y~~~~v~g~~---~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~--~~~~~~v~v~WfyRp~d~~~~~~~~----~ 78 (216)
..+|+++.++..| .++++||+|+|.++|. +.||||+|++|+++. ....+.++||||+||+|++.+...+ +
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 5689999996544 7999999999999986 677999999999862 3337899999999999999876543 4
Q ss_pred CCCeEEEeCccc---ccccccEeeeeEEeeccccccc--cCCCCCceEEeeeecCCC
Q 027973 79 GSKEVFLSDHHD---IQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSS 130 (216)
Q Consensus 79 ~~~ELf~s~~~d---~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ff~r~~yd~~~ 130 (216)
+++|||+++|.+ .+++++|.|+|.|+.++.+..+ +..+.++||.|.++|.+.
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~ 156 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKD 156 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSC
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCc
Confidence 578999999874 8999999999999999887766 335678999999999873
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.86 E-value=1.8e-21 Score=187.21 Aligned_cols=129 Identities=22% Similarity=0.381 Sum_probs=108.2
Q ss_pred CCCceeeeeEEEecCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEE
Q 027973 5 KAPRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVA 43 (216)
Q Consensus 5 ~~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Ia 43 (216)
.+++.+|.++.++|. +|++||+|||.++. ++.|++||
T Consensus 319 ~~~~~~~~~~~~~g~--~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNGI--LYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETTE--EEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECCE--EEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 467899999999876 99999999999932 23478999
Q ss_pred EEEEEEecCCCC------eEEEEEEEEeecCCCCCCc--ccccCCCeEEEeCcccccccccEeeeeEEeeccccccccC-
Q 027973 44 KIERIESDARGA------NVKVHVRWYYRPEESIGGR--RQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA- 114 (216)
Q Consensus 44 rI~~i~~~~~~~------~~~v~v~WfyRp~d~~~~~--~~~~~~~ELf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~- 114 (216)
+|++|+.+..+. .++|+|+|||||+||+.+. ....+.||||+|++.+++|+++|.|||.|++.+++.+...
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999866541 3999999999999998653 2335779999999999999999999999999999875433
Q ss_pred ---CCCCceEEeeeecCCCCCCCC
Q 027973 115 ---VGNDDFFCRFEYNSSSGAFNP 135 (216)
Q Consensus 115 ---~~~~~ff~r~~yd~~~~~f~p 135 (216)
.+++.||++..||+.++.|.+
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~~ 500 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFED 500 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEEC
T ss_pred hccCCCCeEEEEEEEeCCCCeeec
Confidence 345899999999999999983
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.82 E-value=8.3e-21 Score=180.26 Aligned_cols=125 Identities=20% Similarity=0.371 Sum_probs=105.1
Q ss_pred CCceeeeeEEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCCCc-------cccc
Q 027973 6 APRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR-------RQFH 78 (216)
Q Consensus 6 ~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~~~-------~~~~ 78 (216)
+.|.||.++.|+|. +|++||+|||..+. +.+.+||+|.+|+++.++ ..+++|+|||||+||..+. ...+
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~-~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~ 118 (784)
T 4ft4_B 43 KARCHYRSAKVDNV--VYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQ-CHYFTCRWFFRAEDTVINSLVSISVDGHKH 118 (784)
T ss_dssp CEEEECSEEEETTE--EEETTCEEEECCST-TSCCEEEEEEEEEEETTS-CEEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred ccceeeeeeeECCE--EEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCC-CEEEEEEEeeChhhhccccccccccccccc
Confidence 46889999999876 99999999999865 468899999999999988 8999999999999997653 2346
Q ss_pred CCCeEEEeCcccccccccEeeeeEEeeccccccccC----CCCCceEEeeeecCCCCCCC
Q 027973 79 GSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA----VGNDDFFCRFEYNSSSGAFN 134 (216)
Q Consensus 79 ~~~ELf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~----~~~~~ff~r~~yd~~~~~f~ 134 (216)
+.+|||+|++.+++++++|.|||+|++.....+... ....+|||+..|.....+|.
T Consensus 119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 119 DPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp CTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred ccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCcc
Confidence 789999999999999999999999998765433222 23457999999988777666
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.80 E-value=1.2e-19 Score=178.30 Aligned_cols=127 Identities=23% Similarity=0.399 Sum_probs=106.8
Q ss_pred CCceeeeeEEEecCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEEE
Q 027973 6 APRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVAK 44 (216)
Q Consensus 6 ~~~~~y~~~~v~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Iar 44 (216)
.|+.+|.+|.++|. .|++||+|||.++. .+.|++||+
T Consensus 632 ~~~~~Y~~~~~~g~--~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Igq 709 (1330)
T 3av4_A 632 DGRVYCSSITKNGV--VYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGR 709 (1330)
T ss_dssp SSSEEEEEEEETTE--EEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEE
T ss_pred cCceeeeEEEECCE--EEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEE
Confidence 57899999999886 99999999998862 135679999
Q ss_pred EEEEEecCCC-----CeEEEEEEEEeecCCCCCCc--ccccCCCeEEEeCcccccccccEeeeeEEeecccccccc----
Q 027973 45 IERIESDARG-----ANVKVHVRWYYRPEESIGGR--RQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLD---- 113 (216)
Q Consensus 45 I~~i~~~~~~-----~~~~v~v~WfyRp~d~~~~~--~~~~~~~ELf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~---- 113 (216)
|.+||.+.++ +.++|+|+|||||+||..+. ....+.||||+|++.+++|+++|.|||.|++..++....
T Consensus 710 I~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~ 789 (1330)
T 3av4_A 710 IKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYS 789 (1330)
T ss_dssp EEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHH
T ss_pred EEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccc
Confidence 9999986542 37999999999999998753 224689999999999999999999999999988876531
Q ss_pred CCCCCceEEeeeecCCCCCCC
Q 027973 114 AVGNDDFFCRFEYNSSSGAFN 134 (216)
Q Consensus 114 ~~~~~~ff~r~~yd~~~~~f~ 134 (216)
..+++.|||+..||+.++.|.
T Consensus 790 ~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 790 QGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HTSTTEEEESCEEETTTTEEE
T ss_pred cCCCCeEEEEEEecccCCeec
Confidence 134689999999999999886
No 8
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.69 E-value=8.8e-18 Score=115.63 Aligned_cols=64 Identities=38% Similarity=0.878 Sum_probs=57.7
Q ss_pred CCCCCCCCCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 129 SSGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 129 ~~~~f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
..+.|.++.+.+||+|+++++++.+||||+.|+.|||..||+++..+++.++.|+|+.|.....
T Consensus 2 ~~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 2 SSGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CSCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCCccCccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3567889999999999999988889999999999999999999988776668999999998765
No 9
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.61 E-value=3.4e-15 Score=120.75 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=94.3
Q ss_pred EEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCC-------Ccc--------cc-
Q 027973 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (216)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~-------~~~--------~~- 77 (216)
+.-..+|+.|++||+|.|..++ .+.+.++.|.+|.-.....-+.+.|.||+|..|+.. ... .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4555678999999999998865 356778888888775523268999999999999965 112 33
Q ss_pred -------cCCCeEEEeCcccccccccEeeeeEEeeccccccc--cCCCCCceEEeeeecCCCCCCCC
Q 027973 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNP 135 (216)
Q Consensus 78 -------~~~~ELf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ff~r~~yd~~~~~f~p 135 (216)
...+|||+|.+.+.|-+.+|+++|+|++.++|..+ +.....+||||+++|+....|.+
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVP 189 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEE
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCcccc
Confidence 68999999999999999999999999999999977 43456899999999998777874
No 10
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.61 E-value=2.7e-17 Score=112.06 Aligned_cols=57 Identities=37% Similarity=1.050 Sum_probs=51.3
Q ss_pred CCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+.+.+||+|+++++++.+||+|+.|+.|||..||+++..++..++.|+|+.|....+
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 467899999999988899999999999999999999988776668899999987655
No 11
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.61 E-value=3.5e-15 Score=121.09 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=100.1
Q ss_pred EEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCC-------Ccc--------cc-
Q 027973 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (216)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~-------~~~--------~~- 77 (216)
+.-..+|+.|++||+|.|..++ .+.+.++.|.+|.-.....-+.+.|.||+|..|+.. ... .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (238)
T 1m4z_A 44 LKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYY 122 (238)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 5555678999999999998865 356778888888876633278999999999999965 111 33
Q ss_pred -------cCCCeEEEeCcccccccccEeeeeEEeeccccccc--cCCCCCceEEeeeecCCCCCCCC
Q 027973 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNP 135 (216)
Q Consensus 78 -------~~~~ELf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ff~r~~yd~~~~~f~p 135 (216)
...+|||+|.+.+.|-+.+|+++|+|++.++|..+ +.....+||||+++|+....|.+
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (238)
T 1m4z_A 123 NKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVD 189 (238)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEE
T ss_pred hhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCcccc
Confidence 68999999999999999999999999999999876 44556899999999998777875
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.59 E-value=2.9e-16 Score=103.73 Aligned_cols=56 Identities=29% Similarity=0.808 Sum_probs=49.7
Q ss_pred CceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
....+| +|+++++++.+||||+.|+.|||..||+++..+++.+..|+|+.|..+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 467889 99999988889999999999999999999987776668999999987654
No 13
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.49 E-value=4.9e-15 Score=98.73 Aligned_cols=55 Identities=24% Similarity=0.663 Sum_probs=46.3
Q ss_pred CCCCCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 133 FNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 133 f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
+..+...++|+|+++++ +++||+|+.|+.|||..|||++..++. +.|+|+.|...
T Consensus 13 ~~~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~--~~~~C~~C~~s 67 (68)
T 3o70_A 13 NLYFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCRDS 67 (68)
T ss_dssp -CTTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCC--SSCCCHHHHTC
T ss_pred cCCCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcccCC--CcEECCCCCCC
Confidence 34457789999999986 679999999999999999999976443 78999999754
No 14
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.48 E-value=5.4e-15 Score=93.51 Aligned_cols=49 Identities=27% Similarity=0.828 Sum_probs=42.9
Q ss_pred ceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 138 VAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 138 ~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
..++|+|+++++ +.+||+|+.|+.|||..|||++..++. +.|+|+.|..
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~--~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCC--SSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcccCC--CcEECcCCCC
Confidence 358999999986 779999999999999999999986543 7899999964
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.46 E-value=1.2e-14 Score=98.15 Aligned_cols=55 Identities=31% Similarity=0.765 Sum_probs=47.0
Q ss_pred CCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
+.+.++|+|+++++.+.+||+|+.|..|||..||+++..+.. +..|+|+.|..+.
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~-~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADAL-PSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCC-CSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccC-CCcEECCCccCCC
Confidence 578999999999876779999999999999999999865432 4789999997654
No 16
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.45 E-value=1.8e-14 Score=91.01 Aligned_cols=47 Identities=32% Similarity=0.916 Sum_probs=41.2
Q ss_pred EEEecCCCCCCCceEECC-CCCceecCCCCCCChhhhcCCCcEEecccc
Q 027973 141 YCKCEMPYNPDDLMVQCE-GCSDWFHPNCINMTAEEAKRLDHFFCESCS 188 (216)
Q Consensus 141 ~C~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 188 (216)
.|+|++|++++.+||+|+ .|+.|||..|||++..+++. ..|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~-~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAEN-EDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHH-SCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCC-CCEECCCCC
Confidence 478999998889999999 89999999999999876544 789999984
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.43 E-value=8.1e-15 Score=100.00 Aligned_cols=56 Identities=29% Similarity=0.928 Sum_probs=46.9
Q ss_pred CCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhc----CCCcEEecccccccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAK----RLDHFFCESCSTEGQ 192 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~----~~~~~~C~~C~~~~~ 192 (216)
+.+.+||+|+++++ +.+||+|+.|..|||..||+++..+++ ....|+|+.|.....
T Consensus 13 d~~~~~C~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 13 DPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CTTCCCSTTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCEEECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 45679999999986 579999999999999999999976542 237899999987654
No 18
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.40 E-value=2.2e-14 Score=98.26 Aligned_cols=56 Identities=29% Similarity=0.716 Sum_probs=47.3
Q ss_pred CceeEEEecCCCCCCCceEECC--CCCceecCCCCCCChhhh----cCCCcEEeccccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCE--GCSDWFHPNCINMTAEEA----KRLDHFFCESCSTEGQK 193 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~~~~~----~~~~~~~C~~C~~~~~~ 193 (216)
.+.++|+|+++. .+.+||+|+ .|..|||..||+++..++ ..+..|+|+.|......
T Consensus 14 ~~~~~CiC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 14 EIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCCCSSCCCC-CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCCEEeECCCcC-CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 578999999995 367999999 999999999999998764 34578999999876553
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.39 E-value=8.9e-15 Score=96.52 Aligned_cols=51 Identities=31% Similarity=0.638 Sum_probs=43.2
Q ss_pred ceeEEEecCCCCCCCceEECC-CCCceecCCCCCCChhhhcCC-----CcEEecccc
Q 027973 138 VAVYCKCEMPYNPDDLMVQCE-GCSDWFHPNCINMTAEEAKRL-----DHFFCESCS 188 (216)
Q Consensus 138 ~~~~C~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~-----~~~~C~~C~ 188 (216)
....++|.+|++++.+||+|+ .|.+|||..|||+++..++.+ ..|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 345568999999999999999 999999999999998765443 389999996
No 20
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.38 E-value=4.1e-14 Score=98.96 Aligned_cols=49 Identities=27% Similarity=0.819 Sum_probs=41.2
Q ss_pred CCceeEEEecCCCCCCCceEECCCCC---ceecCCCCCCChhhhcCCCcEEecc-ccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEGCS---DWFHPNCINMTAEEAKRLDHFFCES-CST 189 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~-C~~ 189 (216)
+...+||+|+++.+ ++||+||.|+ .|||+.||+|+..+. ..|+|+. |..
T Consensus 23 ~~~~~yCiC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~---~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPK---GKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCSTTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTT---SCCCSSHHHHH
T ss_pred CCCCcEEEeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCC---CCccCChhhcc
Confidence 35689999999875 3799999977 999999999987654 5799999 874
No 21
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.34 E-value=2.2e-13 Score=91.44 Aligned_cols=53 Identities=32% Similarity=0.867 Sum_probs=44.1
Q ss_pred CCceeEEEecCCCCCCCceEECCC--CC-ceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEG--CS-DWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
+....||+|+++++ .+||+|+. |. .|||+.||+++..+. ..|+|+.|..+..+
T Consensus 13 ~~~~~~C~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~---g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 13 PNEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESGP 68 (71)
T ss_dssp TTSCCCSTTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCS---SCCCCTTTSSCSSS
T ss_pred CCCCCEEECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCC---CCEECCCCCccccc
Confidence 35789999999875 58999999 77 899999999987654 57999999876554
No 22
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.32 E-value=2.7e-13 Score=90.39 Aligned_cols=53 Identities=32% Similarity=0.777 Sum_probs=43.3
Q ss_pred CceeEEEecCCCCCCCceEECCC--CCceecCCCCCCChhhhcC---CCcEEecccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEG--CSDWFHPNCINMTAEEAKR---LDHFFCESCSTE 190 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~--C~~w~H~~Cv~~~~~~~~~---~~~~~C~~C~~~ 190 (216)
...++|+|+.+.+ +.+||+|++ |..|||..|||++..++.. ++.|+|+.|..+
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 5679999998765 569999995 9999999999998765543 358999999754
No 23
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.30 E-value=1.6e-13 Score=88.79 Aligned_cols=49 Identities=31% Similarity=0.931 Sum_probs=41.2
Q ss_pred CceeEEEecCCCCCCCceEECCC--CC-ceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
....||+|+++++ ++||+|+. |. +|||+.||+++..+. ..|+|+.|..+
T Consensus 7 ~e~~yC~C~~~~~--g~mi~CD~~~C~~~wfH~~Cvgl~~~p~---~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVSY--GEMIGCDNPDCPIEWFHFACVDLTTKPK---GKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHCC
T ss_pred CCCcEEECCCCCC--CCeeEeeCCCCCCCCEecccCCcccCCC---CCEECcCccCc
Confidence 5789999999874 58999999 76 899999999987655 57999999764
No 24
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.30 E-value=2.6e-13 Score=98.00 Aligned_cols=52 Identities=29% Similarity=0.669 Sum_probs=44.3
Q ss_pred EEEecCCCCCCCceEECC-CCCceecCCCCCCChhhhcCC-----CcEEecccccccc
Q 027973 141 YCKCEMPYNPDDLMVQCE-GCSDWFHPNCINMTAEEAKRL-----DHFFCESCSTEGQ 192 (216)
Q Consensus 141 ~C~C~~~~~~~~~~i~C~-~C~~w~H~~Cv~~~~~~~~~~-----~~~~C~~C~~~~~ 192 (216)
..+|+++++++..||+|+ .|++|||..|||++...++.+ ..|+|+.|..+..
T Consensus 6 C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 348999998888999998 999999999999998665443 7899999987655
No 25
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.30 E-value=4.1e-13 Score=94.06 Aligned_cols=53 Identities=32% Similarity=0.867 Sum_probs=44.1
Q ss_pred CCceeEEEecCCCCCCCceEECCC--CC-ceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 136 DRVAVYCKCEMPYNPDDLMVQCEG--CS-DWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 136 ~~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
+....||+|+++++ .+||+|+. |. .|||+.||+++..+. ..|+|+.|.....+
T Consensus 33 ~~e~~yCiC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~---g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 33 PNEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESGP 88 (91)
T ss_dssp SCCCBCSTTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCC---SSCCCTTTCCCCSS
T ss_pred CCCCcEEECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCC---CCEECcCccCcCCc
Confidence 35789999999975 58999999 66 899999999987654 57999999876554
No 26
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-13 Score=92.59 Aligned_cols=51 Identities=25% Similarity=0.750 Sum_probs=43.1
Q ss_pred CceeEEEecCCCCCCCceEECCCCC---ceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCS---DWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
...+||+|+++.+ .+||+||.|+ .|||+.||+++..+. ..|+|+.|.....
T Consensus 4 ~~~~yC~C~~~~~--g~MI~CD~cdC~~~WfH~~Cvgl~~~p~---~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCICNQVSY--GEMVGCDNQDCPIEWFHYGCVGLTEAPK---GKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCSTTSCCCC--SSEECCSCTTCSCCCEEHHHHTCSSCCS---SCCCCHHHHHHHH
T ss_pred CCCeEEEcCCCCC--CCEeEeCCCCCCccCCcccccccCcCCC---CCEECCCCCcccc
Confidence 5678999999964 4999999975 999999999987543 6899999987665
No 27
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.28 E-value=1.5e-13 Score=122.14 Aligned_cols=56 Identities=36% Similarity=1.017 Sum_probs=50.8
Q ss_pred CceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.+++||+|+++++++++||||+.|+.|||..|||++..++..++.|+|+.|....+
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 56899999999988899999999999999999999988877668999999987766
No 28
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.28 E-value=2.8e-13 Score=121.90 Aligned_cols=60 Identities=32% Similarity=0.900 Sum_probs=52.7
Q ss_pred CCCCCceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 133 FNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 133 f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
..++....||+|+++++++.+||||+.|+.|||..|||++..+++.++.|+|+.|....+
T Consensus 31 ~~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 31 APPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp -CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CcCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 345678999999999988899999999999999999999988777668899999987654
No 29
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.28 E-value=2.6e-13 Score=88.68 Aligned_cols=50 Identities=26% Similarity=0.880 Sum_probs=41.2
Q ss_pred CceeEEEecCCCCCCCceEECCC--CC-ceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
...+||+|+++++ .+||+|+. |. .|||+.||+++..+. ..|+|+.|..++
T Consensus 9 ~e~~yC~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p~---~~w~Cp~C~~~r 61 (62)
T 2g6q_A 9 NEPTYCLCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKPK---GKWYCPKCRGDN 61 (62)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHTCC
T ss_pred CCCcEEECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCCC---CCEECcCcccCC
Confidence 5689999999875 48999999 54 999999999987653 679999997643
No 30
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.24 E-value=6.6e-13 Score=90.18 Aligned_cols=55 Identities=27% Similarity=0.808 Sum_probs=45.4
Q ss_pred CceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 137 RVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 137 ~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
....+| +|+++++ ++.||+|+.|..|||..||+++..+... ..|+|+.|..+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEE-MQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSS-SCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCC-CCEEChhccCchhh
Confidence 456789 9999875 5689999999999999999998765543 67999999876553
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.23 E-value=5.7e-13 Score=86.53 Aligned_cols=49 Identities=35% Similarity=0.951 Sum_probs=40.5
Q ss_pred CceeEEEecCCCCCCCceEECCC--CC-ceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
....||+|+++++ ++||+|+. |. .|||+.||+++..+. ..|+|+.|..+
T Consensus 8 ~e~~~C~C~~~~~--g~mi~CD~cdC~~~wfH~~Cvgl~~~p~---g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQE 59 (60)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHC-
T ss_pred CCCCEEECCCcCC--CCEEEeCCCCCCCceEehhcCCCCcCCC---CCEECcCccCc
Confidence 5689999999874 58999999 65 899999999987654 57999999764
No 32
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.22 E-value=5.2e-13 Score=104.87 Aligned_cols=56 Identities=25% Similarity=0.902 Sum_probs=49.1
Q ss_pred CceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
....+|+|+++++++++||+|+.|..|||..|+|++..+.+..+.|+|+.|....+
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 56789999999987889999999999999999999987766668999999987654
No 33
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.16 E-value=3.7e-12 Score=100.53 Aligned_cols=54 Identities=31% Similarity=0.819 Sum_probs=43.8
Q ss_pred eeEE-EecCCCCCCCc---eEECCCCCceecCCCCCCChhhhcCC------CcEEecccccccc
Q 027973 139 AVYC-KCEMPYNPDDL---MVQCEGCSDWFHPNCINMTAEEAKRL------DHFFCESCSTEGQ 192 (216)
Q Consensus 139 ~~~C-~C~~~~~~~~~---~i~C~~C~~w~H~~Cv~~~~~~~~~~------~~~~C~~C~~~~~ 192 (216)
+.+| +|+++|+++++ ||+|+.|+.|||..|+|++.+.++.+ ..|+|+.|....+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3568 79999987764 99999999999999999997533222 3799999988765
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.10 E-value=2.9e-11 Score=86.15 Aligned_cols=52 Identities=27% Similarity=0.794 Sum_probs=42.6
Q ss_pred CceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
...+.|+|+.+.+ ++.||+|+.|..|||..|++++...+. +.|+|+.|....
T Consensus 26 ~d~vrCiC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p--~~w~C~~C~~~~ 77 (98)
T 2lv9_A 26 TDVTRCICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIP--DTYLCERCQPRN 77 (98)
T ss_dssp CCBCCCTTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCC--SSBCCTTTSSSC
T ss_pred CCCEEeECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCC--CCEECCCCcCCC
Confidence 3467899999875 569999999999999999999765443 579999997543
No 35
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.98 E-value=1.4e-10 Score=103.95 Aligned_cols=45 Identities=24% Similarity=0.633 Sum_probs=40.7
Q ss_pred CCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 148 YNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 148 ~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.+++.+||+||.|+.|||+.|||++..+++.++.|+||.|....+
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 467889999999999999999999998888779999999987655
No 36
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.55 E-value=3.8e-08 Score=76.55 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=38.8
Q ss_pred CceeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhc---CCCcEEeccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAK---RLDHFFCESCSTEG 191 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~---~~~~~~C~~C~~~~ 191 (216)
....||.|+++.+.+..|+||..|.+|||..|+.....+.. ....|.|..|....
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 45679999999999999999999999999999986543332 23688999998754
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.42 E-value=3.2e-08 Score=61.73 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=33.8
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
+|++..+ ++.|+.|+.|..|||..|++++...... ..|+|+.|...
T Consensus 5 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 4666543 4689999999999999999654322222 57999999753
No 38
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.38 E-value=1.4e-07 Score=62.12 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=35.4
Q ss_pred eEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 140 VYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 140 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.+| +|... ..|+.|+.|..|||..|++++...... ..|+|+.|..+..
T Consensus 9 ~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 9 DECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPS-GTWRCSSCLQATV 57 (66)
T ss_dssp CSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCS-SCCCCHHHHHTCC
T ss_pred CCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCC-CCeECccccCccc
Confidence 344 57653 479999999999999999954322222 6799999986554
No 39
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.36 E-value=1e-07 Score=71.04 Aligned_cols=40 Identities=28% Similarity=0.725 Sum_probs=31.1
Q ss_pred ceEECCCCCceecCCCCCCChh------hhcCCCcEEecccccccc
Q 027973 153 LMVQCEGCSDWFHPNCINMTAE------EAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 153 ~~i~C~~C~~w~H~~Cv~~~~~------~~~~~~~~~C~~C~~~~~ 192 (216)
.||+|+.|++|||..|++++.+ .+.....|.|+.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 3999999999999999999863 212224699999987544
No 40
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.31 E-value=5.6e-06 Score=66.89 Aligned_cols=46 Identities=22% Similarity=0.587 Sum_probs=29.9
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
+|++..+ ++.|+.|+.|..+||+.|++++......+..|+|+.|..
T Consensus 179 vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4544433 568999999999999999995533333323799999975
No 41
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.26 E-value=6.6e-08 Score=64.53 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=40.0
Q ss_pred CceeEEEecCCC-CCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 137 RVAVYCKCEMPY-NPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 137 ~~~~~C~C~~~~-~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
......+|.+.. ..++.||.|+.|..|||..|++++..+. ..|+|+.|..+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~---g~W~C~~C~~~~ 67 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE---GQWLCRHCLQSR 67 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCS---SCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCC---CCcCCccCcCcC
Confidence 344555888765 3467999999999999999999875332 579999997654
No 42
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.24 E-value=1.2e-07 Score=61.09 Aligned_cols=47 Identities=21% Similarity=0.642 Sum_probs=34.9
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQKK 194 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 194 (216)
+|++. +.|+.|+.|..|||..|++++...... ..|+|+.|.....++
T Consensus 10 vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 10 VCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQDQMLKK 56 (60)
T ss_dssp TTCCC----SSCEECSSSSCEECGGGSSSCCSSCCC-SCCCCHHHHHHHHHT
T ss_pred CCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCC-CceEChhccChhhch
Confidence 45553 489999999999999999954322222 579999998766543
No 43
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.20 E-value=1.7e-07 Score=60.63 Aligned_cols=48 Identities=25% Similarity=0.695 Sum_probs=35.9
Q ss_pred ceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 138 VAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 138 ~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
...+| +|.+. ..|+.|+.|..|||..|++++...... ..|+|+.|...
T Consensus 10 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCC-CceECcccccc
Confidence 44556 47663 489999999999999999985332222 67999999753
No 44
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.20 E-value=4.5e-07 Score=60.28 Aligned_cols=47 Identities=21% Similarity=0.573 Sum_probs=33.7
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
+|++.. .++.|+.|+.|..+||+.|++++......+..|+|+.|...
T Consensus 23 ~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 344433 35699999999999999999954333333238999999753
No 45
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.16 E-value=8.4e-08 Score=66.75 Aligned_cols=53 Identities=17% Similarity=0.415 Sum_probs=40.9
Q ss_pred CceeEEEecCCC-CCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYCKCEMPY-NPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C~C~~~~-~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.....++|.... ..++.||.|+.|..|||..|++++..|. ..|+|+.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~---g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE---GQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCS---SCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCC---CceECccccCccc
Confidence 344556888764 3456999999999999999999875332 6799999987655
No 46
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.15 E-value=5.7e-07 Score=58.99 Aligned_cols=53 Identities=21% Similarity=0.549 Sum_probs=38.4
Q ss_pred eEEEecCCCC-CCCceEECCCCCceecCCCCCCChhh--hcCCCcEEecccccccc
Q 027973 140 VYCKCEMPYN-PDDLMVQCEGCSDWFHPNCINMTAEE--AKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 140 ~~C~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~--~~~~~~~~C~~C~~~~~ 192 (216)
...+|..... .++.|+.|+.|..+||..|++++... ......|+|+.|.....
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3347777642 45799999999999999999975321 21126799999987654
No 47
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=5.7e-07 Score=57.11 Aligned_cols=45 Identities=20% Similarity=0.749 Sum_probs=33.2
Q ss_pred eEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 140 VYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 140 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
.+| +|... ..|+.|+.|..|||..|++++...... ..|+|+.|..
T Consensus 10 ~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCC-CceEChhhhC
Confidence 345 56653 489999999999999999954322222 6799999964
No 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=4.4e-07 Score=63.60 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=36.8
Q ss_pred EE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 141 YC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 141 ~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
.| +|.+..+ ...||.|+.|..|||+.|++++...... ..|+|+.|....
T Consensus 18 ~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~ 67 (92)
T 2e6r_A 18 ICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPR-GIWRCPKCILAE 67 (92)
T ss_dssp CCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred CCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCC-CCcCCccCcCcc
Confidence 45 7877653 4689999999999999999954322222 579999997653
No 49
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=1.6e-06 Score=58.62 Aligned_cols=46 Identities=22% Similarity=0.610 Sum_probs=33.6
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
+|.+.. .++.|+.|+.|..+||+.|++++.........|+|+.|..
T Consensus 31 vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 455543 3569999999999999999995433333323799999974
No 50
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.06 E-value=2e-06 Score=59.71 Aligned_cols=59 Identities=17% Similarity=0.515 Sum_probs=41.4
Q ss_pred EEEecCCCC-CCCceEECCCCCceecCCCCCCChhh--h-cCCCcEEeccccccccccccCCC
Q 027973 141 YCKCEMPYN-PDDLMVQCEGCSDWFHPNCINMTAEE--A-KRLDHFFCESCSTEGQKKLQNSQ 199 (216)
Q Consensus 141 ~C~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~--~-~~~~~~~C~~C~~~~~~~~~~~~ 199 (216)
..+|..... +++.|+.|+.|...||..|++++... . .....|+|+.|......+.+...
T Consensus 19 C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~~ 81 (88)
T 1wev_A 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQ 81 (88)
T ss_dssp CSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCC
T ss_pred CCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccccC
Confidence 347777654 24689999999999999999975321 0 11267999999877764443333
No 51
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.95 E-value=3.1e-06 Score=57.17 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=29.8
Q ss_pred CCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
.+.|+.|+.|..+||+.|++++.......+.|+|+.|..
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 468999999999999999995533333334499999974
No 52
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.93 E-value=3.3e-06 Score=54.51 Aligned_cols=48 Identities=21% Similarity=0.691 Sum_probs=34.6
Q ss_pred eeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 139 AVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 139 ~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
..+| +|.+ +..|+.|+.|..+||..|++++...... ..|+|+.|..+.
T Consensus 9 ~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCS-SCCCCTTTTTTC
T ss_pred CCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCC-CccCChhhcCch
Confidence 3344 4654 3489999999999999999954322222 579999997653
No 53
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.87 E-value=2.9e-06 Score=60.91 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=34.6
Q ss_pred CceeEEEecCCCCCCCceEECC--CCCceecCCCCCCChhhhcCCCcEEecccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCE--GCSDWFHPNCINMTAEEAKRLDHFFCESCS 188 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 188 (216)
....+|.+.+. ++.||.|+ .|..|||+.|++++..+. ..|+|+.|.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~---g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLNLTQPPY---GKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGTCSSCCS---SCCCCGGGB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCcCCcCCC---CCEECCCCC
Confidence 34556765552 45899999 899999999999876543 569999774
No 54
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.85 E-value=2.7e-06 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.505 Sum_probs=29.6
Q ss_pred CceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 152 DLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 152 ~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
..|+.|+.|..+||+.|+.+....... ..|+|+.|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRPG-TGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCCS-SSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccCcCCC-CCEECccccCC
Confidence 469999999999999999755333322 57999999754
No 55
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.76 E-value=1e-05 Score=58.61 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=34.0
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
+|+.....++.|+.|+.|..+||..|+..+...... ..|+|+.|..
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~-~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS-SCCCCTTTSC
T ss_pred cccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC-CCeECCCCCC
Confidence 455554445689999999999999999654322222 5799999975
No 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.74 E-value=5.6e-06 Score=60.19 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=35.2
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|++.. .+..|+.|+.|..+||+.|++++...... ..|+|+.|.....
T Consensus 63 ~C~~~~-~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 63 LCGTSE-NDDQLLFCDDCDRGYHMYCLNPPVAEPPE-GSWSCHLCWELLK 110 (114)
T ss_dssp TTTCCT-TTTTEEECSSSCCEEETTTSSSCCSSCCS-SCCCCHHHHHHHH
T ss_pred cccccC-CCCceEEcCCCCccccccccCCCccCCCC-CCeECccccchhh
Confidence 455543 35689999999999999999954322222 5799999976554
No 57
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.71 E-value=3.7e-05 Score=53.08 Aligned_cols=48 Identities=23% Similarity=0.610 Sum_probs=34.5
Q ss_pred eEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 140 VYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 140 ~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.+| +|.+. +.++.|+.|...||+.|+.++...... ..|+|+.|.....
T Consensus 26 ~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 26 TICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 74 (88)
T ss_dssp SCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCS-SSCCCCSCCCCCS
T ss_pred CcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcC-CCcCCccccCCCc
Confidence 344 55543 369999999999999999554322222 6799999987655
No 58
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.67 E-value=4.2e-05 Score=60.04 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=30.9
Q ss_pred CceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 152 DLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 152 ~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+.++.|+.|..+||..|+.++...... ..|+|+.|.....
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~l~~~p~-~~W~C~~C~~~~~ 53 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPTLTNFPS-GEWICTFCRDLSK 53 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CeeeecCCCCcccCccccCCCCCCCCC-CCEECccccCccc
Confidence 469999999999999999754332222 5699999987654
No 59
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.53 E-value=2.3e-05 Score=56.51 Aligned_cols=48 Identities=19% Similarity=0.542 Sum_probs=35.2
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|++..+ +..|+.|+.|..+||..|+.++...... ..|+|+.|.....
T Consensus 59 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 59 NCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPT-NGWKCKNCRICIS 106 (111)
T ss_dssp TTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCS-SCCCCHHHHCCSC
T ss_pred ccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCC-CCcCCcCCcCcCC
Confidence 4555543 4589999999999999999854333222 5799999976543
No 60
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.47 E-value=2.2e-05 Score=57.05 Aligned_cols=41 Identities=24% Similarity=0.664 Sum_probs=30.5
Q ss_pred CCceEECCCCCceecCCCCCCChhhh---cCCCcEEeccccccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMTAEEA---KRLDHFFCESCSTEG 191 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~~~~~---~~~~~~~C~~C~~~~ 191 (216)
+..|++|+.|+.|||..|+++..+.. +.++.|.|+.|....
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 45799999999999999999864322 234679999998654
No 61
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.42 E-value=8.8e-05 Score=59.32 Aligned_cols=45 Identities=24% Similarity=0.532 Sum_probs=33.4
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|+++ +.++.|+.|..+||..|++++...... ..|+|+.|.....
T Consensus 12 ~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 12 VCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPS-GDWICTFCRDIGK 56 (207)
T ss_dssp TTCCC----EEEEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CCCCC----CceEEcCCCCCccCCccCCCCCCCCCC-CCEEeCceeCccc
Confidence 56543 369999999999999999754332222 5699999987654
No 62
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.01 E-value=0.00035 Score=50.21 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=33.8
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCS 188 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 188 (216)
+|....+ ...||.|+.|...||..|++++..+... ..|+|+.|.
T Consensus 12 ~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~-~~W~C~~C~ 55 (111)
T 2ysm_A 12 VCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKR-AGWQCPECK 55 (111)
T ss_dssp TTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTS-TTCCCTTTC
T ss_pred CCCCCCC-CcCCeECCCCCCCcChHHhCCccccccc-cCccCCcCC
Confidence 5665543 2468999999999999999988655433 679999875
No 63
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=96.81 E-value=0.00093 Score=52.62 Aligned_cols=40 Identities=20% Similarity=0.495 Sum_probs=30.5
Q ss_pred CceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 152 DLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 152 ~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+.++.|+.|...||..|+.++...... ..|+|+.|.....
T Consensus 12 g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 12 GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 51 (189)
T ss_dssp SSCCCCTTTCCBCCSTTSTTCCSSCCC-TTCCTTTTSCSCC
T ss_pred CceeECCCCCchhccccCCCCcccCCC-CCCCCcCccCCCC
Confidence 368999999999999999644322222 6799999987654
No 64
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.25 E-value=0.002 Score=46.47 Aligned_cols=37 Identities=27% Similarity=0.664 Sum_probs=28.9
Q ss_pred CCceEECCCCCceecCCCCCCChhh---hcCCCcEEecccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMTAEE---AKRLDHFFCESCS 188 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~~~~---~~~~~~~~C~~C~ 188 (216)
.+.||.|+.|...||+.|++++... ... ..|+|+.|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~-~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKT-YKWQCIECK 59 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHH-TTCCCGGGC
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCC-CccCccccC
Confidence 3599999999999999999987432 222 579888773
No 65
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.17 E-value=0.00072 Score=48.71 Aligned_cols=38 Identities=21% Similarity=0.657 Sum_probs=29.5
Q ss_pred CCceEECCCCCceecCCCCCCChhhh--cCCCcEEecccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMTAEEA--KRLDHFFCESCS 188 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~~~~~--~~~~~~~C~~C~ 188 (216)
.+.||.|+.|...||+.|+++.+... .....|+|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45899999999999999999864321 112679999985
No 66
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=89.90 E-value=0.015 Score=42.77 Aligned_cols=41 Identities=20% Similarity=0.536 Sum_probs=30.1
Q ss_pred CCceEECCCCCceecCCCCCCC--h---hhh-cCCCcEEeccccccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMT--A---EEA-KRLDHFFCESCSTEG 191 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~--~---~~~-~~~~~~~C~~C~~~~ 191 (216)
+...+.|+.|-.-||..|+... + ..+ ...+.|.|..|..+.
T Consensus 66 GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 66 GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 4578899999999999999743 1 122 123789999997554
No 67
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.44 E-value=0.055 Score=40.42 Aligned_cols=40 Identities=23% Similarity=0.577 Sum_probs=29.7
Q ss_pred CCceEECCCCCceecCCCCCCChh--hh----cCCCcEEecccccc
Q 027973 151 DDLMVQCEGCSDWFHPNCINMTAE--EA----KRLDHFFCESCSTE 190 (216)
Q Consensus 151 ~~~~i~C~~C~~w~H~~Cv~~~~~--~~----~~~~~~~C~~C~~~ 190 (216)
+...+.|+.|-.-||..|+.++.. .+ ...+.|.|+.|...
T Consensus 72 GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 72 GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 447889999999999999984321 11 12378999999754
No 68
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.48 E-value=0.061 Score=36.31 Aligned_cols=46 Identities=22% Similarity=0.549 Sum_probs=31.4
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCC---Chhh--------hcCCCcEEecccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINM---TAEE--------AKRLDHFFCESCSTE 190 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~---~~~~--------~~~~~~~~C~~C~~~ 190 (216)
+|.+.. .+.+..|..|..-||..|+.. ...+ +....-|.|+.|..-
T Consensus 20 VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 20 VCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp TTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred cccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 566544 568899999999999999842 1111 112257999999543
No 69
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.45 E-value=0.33 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=28.5
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
+|......++..+.-..|+..||..|+..-.. ....||.|...
T Consensus 10 IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 52 (55)
T 1iym_A 10 VCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLT 52 (55)
T ss_dssp TTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCC
T ss_pred cCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCE
Confidence 66666654455566667999999999952211 23469999754
No 70
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=80.22 E-value=4.7 Score=25.24 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=41.5
Q ss_pred ecCCCCeEEEEEEEEeecCCCCCCcccccCCCeEEEeCcccccccccEeeeeEEee
Q 027973 50 SDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHS 105 (216)
Q Consensus 50 ~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~ELf~s~~~d~~~~~~I~gkc~V~~ 105 (216)
.-.+| |.|.=+-|..|+.-....-.+..||.....++-.++-.|+|++.|+.
T Consensus 8 A~e~g----V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t 59 (65)
T 3zzs_A 8 ALEDG----VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 59 (65)
T ss_dssp ESSTT----EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEE
T ss_pred EecCC----eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEe
Confidence 33456 77788889999865444447899999999999999999999999985
No 71
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=79.00 E-value=2.3 Score=26.43 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
.+..|+.|++.-.| ..+|.|.|+++-...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecCC
Confidence 47899999999988 789999999997753
No 72
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=76.21 E-value=1.5 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecc
Q 027973 149 NPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCES 186 (216)
Q Consensus 149 ~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~ 186 (216)
.+...+|||+.|.+|=-.. .++. .....++.|+|..
T Consensus 23 ~~~~~WVQCD~C~KWRrLP-~~~~-~~~~~pd~W~C~m 58 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIP-ASVV-GSIDESSRWICMN 58 (100)
T ss_dssp SSSSEEEECTTTCCEEEEC-HHHH-TTSTTSSCCCGGG
T ss_pred CCCCeEEeeCCCCccccCC-hhHc-cccCCCCCceeCC
Confidence 3467899999999997653 1100 1111247899964
No 73
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.84 E-value=1.7 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=35.2
Q ss_pred ceeEEEecCCCCC-----CCceEECCCC-CceecCCCCCCChhhhcCCCcEEeccccc
Q 027973 138 VAVYCKCEMPYNP-----DDLMVQCEGC-SDWFHPNCINMTAEEAKRLDHFFCESCST 189 (216)
Q Consensus 138 ~~~~C~C~~~~~~-----~~~~i~C~~C-~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 189 (216)
....|+|.+.-+. .-.+|.|..| ..=-|..|..+.... ..|.|..|..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~~~----~~weC~~C~~ 78 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNS----KKWECNECLP 78 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCTTC----SCCCCTTTSC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcCCC----CCEECCcCcc
Confidence 3456777654332 2378999999 789999999976432 6799999984
No 74
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=75.60 E-value=2.8 Score=27.56 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..|..|+.|++.-.| ..+|.|.|.++-..
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 478999999999988 78999999999874
No 75
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=73.68 E-value=5.8 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
..|.+|+.|++.-.| ..+|.|.|++..
T Consensus 14 ~~~~~geDVL~rw~D--G~fYLGtIVd~~ 40 (69)
T 2xk0_A 14 VTYALQEDVFIKCND--GRFYLGTIIDQT 40 (69)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEEEEEC
T ss_pred cccccCCeEEEEecC--CCEEEEEEEecC
Confidence 368999999999877 789999996643
No 76
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=73.54 E-value=7.2 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=39.4
Q ss_pred EEEEEEeecCCCCCCcccccCCCeEEEeCcccccccccEeeeeEEee
Q 027973 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHS 105 (216)
Q Consensus 59 v~v~WfyRp~d~~~~~~~~~~~~ELf~s~~~d~~~~~~I~gkc~V~~ 105 (216)
|.|.=+-|..||.-....-.+..||.....++--++-.|+||+.|+.
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t 63 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 63 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEe
Confidence 77788889999864444447899999999999999999999999986
No 77
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=73.41 E-value=6.8 Score=25.39 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred EEEEEEeecCCCCCCcccccCCCeEEEeCcccccccccEeeeeEEee
Q 027973 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHS 105 (216)
Q Consensus 59 v~v~WfyRp~d~~~~~~~~~~~~ELf~s~~~d~~~~~~I~gkc~V~~ 105 (216)
|.|.=+-|..|+.-....-.+..||.....++-.++-.|+|++.|+.
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t 67 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQT 67 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEe
Confidence 77777888888854433347899999999999999999999999986
No 78
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=69.44 E-value=6 Score=25.22 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
.+++||.|+..=.| ..+|.|.|.+|.+..
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~~ 41 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINILK 41 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccCC
Confidence 68999999988666 689999999999853
No 79
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.69 E-value=1.4 Score=28.06 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred EEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 141 YCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 141 ~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.-+|..........+.. .|+..||..|+..-... ...||.|.....
T Consensus 18 C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 18 CAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV-----RKVCPLCNMPVL 63 (74)
T ss_dssp CSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH-----CSBCTTTCCBCS
T ss_pred CcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc-----CCcCCCcCcccc
Confidence 33777766543333332 59999999999522111 136999987665
No 80
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=67.58 E-value=9.7 Score=25.92 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=24.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecCC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDAR 53 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~ 53 (216)
.|.+|+.|++..+ ...+-|+|+++.....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~~ 51 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRKA 51 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcCC
Confidence 6899999999963 4789999999998543
No 81
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=67.27 E-value=4.2 Score=29.57 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=31.6
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC-----CCCeEEEEEEEEee
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-----RGANVKVHVRWYYR 66 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~-----~~~~~~v~v~WfyR 66 (216)
..|.+||.|...-.. -|.|-|+|...-... .+....+.|+||--
T Consensus 21 ~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp CCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 489999999999886 789999998864321 11124577777753
No 82
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.21 E-value=2.5 Score=27.96 Aligned_cols=52 Identities=19% Similarity=0.442 Sum_probs=31.7
Q ss_pred eeEEEecCCCCCCCceEE---CCCCCceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 139 AVYCKCEMPYNPDDLMVQ---CEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 139 ~~~C~C~~~~~~~~~~i~---C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
...-||...+..++.++. |.+...+||..|+..=.... ....||.|......
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeec
Confidence 344488776655555552 22335999999994211111 23579999887763
No 83
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.24 E-value=1.3 Score=26.28 Aligned_cols=44 Identities=16% Similarity=0.440 Sum_probs=27.9
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
+|..........+....|+..||..|+..-.. ....||.|....
T Consensus 10 IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 10 ICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-----EGYRCPLCSGPS 53 (55)
T ss_dssp TTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-----HTCCCTTSCCSS
T ss_pred ccChhhcCCCcCeEecCCCCcccHHHHHHHHH-----cCCcCCCCCCcC
Confidence 56665543334455667999999999952211 115699997643
No 84
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=64.60 E-value=6.2 Score=26.29 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=33.0
Q ss_pred EccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEE
Q 027973 23 IKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWY 64 (216)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~Wf 64 (216)
-.+||.+.|...-...+...|.|+++.... | ..-..|+|+
T Consensus 6 A~vGDrlvv~g~~vg~~~R~GeIvEV~g~d-G-~PPY~VRw~ 45 (83)
T 2a7y_A 6 AKVGDYLVVKGTTTERHDQHAEIIEVRSAD-G-SPPYVVRWL 45 (83)
T ss_dssp CCTTEEEEESCTTTSCCEEEEEEEECSCSS-S-CSCEEEEET
T ss_pred ccCCCEEEEecCcCCCCCcEEEEEEEECCC-C-CCCEEEEec
Confidence 378999999998877899999999998854 4 466788884
No 85
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=62.84 E-value=4.5 Score=30.32 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=31.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecCCC--CeEEEEEEEEee
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG--ANVKVHVRWYYR 66 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~--~~~~v~v~WfyR 66 (216)
..+.+||.|...-.. -+.|-|+|......... ..-.+.|+||=.
T Consensus 15 ~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~ 60 (154)
T 3llr_A 15 RGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGD 60 (154)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred CCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCC
Confidence 479999999999976 79999999997643211 023466777754
No 86
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.72 E-value=4.1 Score=26.04 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=28.5
Q ss_pred EEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 142 CKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 142 C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
-||...+......+ --.|+..||..|+..- .. ....||.|......
T Consensus 19 ~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~---~~--~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 19 PVCKEDYALGESVR-QLPCNHLFHDSCIVPW---LE--QHDSCPVCRKSLTG 64 (78)
T ss_dssp TTTTSCCCTTSCEE-ECTTSCEEETTTTHHH---HT--TTCSCTTTCCCCCC
T ss_pred eeCCccccCCCCEE-EeCCCCeecHHHHHHH---HH--cCCcCcCcCCccCC
Confidence 37776664333222 2359999999999521 11 22469999877663
No 87
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=62.45 E-value=7 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=23.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
..|.+||.|+-.=.. +..+|-|+|.+|-
T Consensus 8 ~~~~vgd~VmaRW~G-d~~yYparI~Si~ 35 (66)
T 2l8d_A 8 RKYADGEVVMGRWPG-SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSCSSCEEEEECTT-SSCEEEEEEEEEE
T ss_pred eEeecCCEEEEEcCC-CccceEEEEEEec
Confidence 478999999998744 3689999999998
No 88
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=61.86 E-value=7.7 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.0
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
..|.+||.|+-.=.. +..+|-|||.+|-
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEec
Confidence 478999999988764 4689999999998
No 89
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=60.53 E-value=4.2 Score=30.27 Aligned_cols=28 Identities=21% Similarity=0.599 Sum_probs=23.0
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
..|++||.|...-.. -|.|-|+|...-.
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~ 48 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPD 48 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC-
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchh
Confidence 368999999999976 6899999987543
No 90
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=58.93 E-value=2.4 Score=28.59 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=23.3
Q ss_pred CCceeEE-EecCCCCCCCceEECC--CCCceecCCCCC
Q 027973 136 DRVAVYC-KCEMPYNPDDLMVQCE--GCSDWFHPNCIN 170 (216)
Q Consensus 136 ~~~~~~C-~C~~~~~~~~~~i~C~--~C~~w~H~~Cv~ 170 (216)
++|.+.| +|.+.. ..-.|||. .|...||..|..
T Consensus 14 ~R~~l~C~iC~~~~--~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 14 ARWKLTCYLCKQKG--VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCBTTTTBCC--SSCEEECSCTTTCCEEEHHHHH
T ss_pred HHhcCCCcCCCCCC--CcEeEecCCCCCCCcCcHHHHH
Confidence 3455555 776532 24789997 699999999973
No 91
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=57.65 E-value=7.5 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=20.8
Q ss_pred CCceEECC--CCCceecCCCCCCChhhhcCCCcEEec
Q 027973 151 DDLMVQCE--GCSDWFHPNCINMTAEEAKRLDHFFCE 185 (216)
Q Consensus 151 ~~~~i~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~ 185 (216)
...+|||+ .|.+|=-..=- +... ..++.|+|.
T Consensus 15 ~~~WVQCd~p~C~KWR~LP~~-~~~~--~lpd~W~C~ 48 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRLCGN-IDPS--VLPDNWSCD 48 (69)
T ss_dssp CCCEEECSSTTTCCEEECCSS-CCTT--TSCTTCCGG
T ss_pred CCeEEEeCccccCcccCCccc-cccc--cCCCcCEeC
Confidence 45899999 99999766221 1111 123789996
No 92
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.43 E-value=16 Score=23.21 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
-.|..|+.|+..=.| ..+|.|.|.++...
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 478999999998887 78999999999864
No 93
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=56.51 E-value=3.9 Score=28.75 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=29.5
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEEEEEEecC-CCCeEEEEEEEE
Q 027973 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-RGANVKVHVRWY 64 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~-~~~~~~v~v~Wf 64 (216)
+..+.+||.|...-.. -+.|-|+|.++-+.. +.....+.|+||
T Consensus 17 ~~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp SSSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred cCCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 3478999999999876 689999998753321 111234666666
No 94
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=56.13 E-value=4.4 Score=30.08 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=31.2
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCC--CeEEEEEEEEe
Q 027973 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG--ANVKVHVRWYY 65 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~--~~~~v~v~Wfy 65 (216)
+..+.+||.|...-.. -+.|-|+|.+....... ..-.+.|.||-
T Consensus 9 ~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 3579999999999876 78999999886553211 02356677764
No 95
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=52.81 E-value=25 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=25.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
..|.+|+.|++.-.+ ...|-|+|+++....
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~ 40 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVND 40 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEET
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEecc
Confidence 368999999999864 478999999999754
No 96
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=51.76 E-value=20 Score=24.82 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC------CCCeEEEEEEEEe
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA------RGANVKVHVRWYY 65 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~------~~~~~~v~v~Wfy 65 (216)
..+++||.|...-.. -|.|-|+|..--.-. ......+.|++|-
T Consensus 4 ~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 4 DRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp CCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 478999999999886 789999998753311 1113567777664
No 97
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.59 E-value=8.8 Score=24.07 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
-.+..||.|+..=.| ..+|.|.|.++-..
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 478999999999766 68999999998764
No 98
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=51.35 E-value=25 Score=21.80 Aligned_cols=29 Identities=34% Similarity=0.388 Sum_probs=23.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
..+++||.+...=... ...|=|+|+++..
T Consensus 7 ~~~~vGd~c~A~~s~D-g~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSED-GQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTTT-SSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCC-CCEEEEEEEEEcC
Confidence 4689999999885432 5789999999986
No 99
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=50.69 E-value=15 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
.+++||-|+..=+| ..+|-|+|.+|-.+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD 33 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC
Confidence 58999999999855 68999999999875
No 100
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=49.72 E-value=2.2 Score=29.67 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=24.4
Q ss_pred ECCCCCceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 156 QCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 156 ~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
.-..|+..||..|+..-...........||.|......
T Consensus 57 ~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred ecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34679999999999522111100135689999877664
No 101
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=49.53 E-value=8.4 Score=26.17 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=23.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
..|++||.|...-.. -+.|-|+|.++-
T Consensus 4 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~ 30 (94)
T 3qby_A 4 HAFKPGDLVFAKMKG--YPHWPARIDDIA 30 (94)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEECCCC
T ss_pred CcCccCCEEEEecCC--CCCCCEEEeecc
Confidence 368999999999976 789999999763
No 102
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=48.07 E-value=17 Score=22.01 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=32.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeec
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp 67 (216)
.+.+||.|.|..+. -.-+.|.|.++.. .++ ...+.+..|-|.
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~-~k~-~v~V~v~~~Gr~ 45 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINP-ERG-KVKVMVTIFGRE 45 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEET-TTT-EEEEEEESSSSE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcC-CCC-EEEEEEEeCCCE
Confidence 56899999999987 4568999999865 334 577787777664
No 103
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=47.07 E-value=8.2 Score=26.86 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=25.2
Q ss_pred cCCcEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 18 SISKTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
+.|..+.+||.|...-.. -|.|-|+|.+..
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~ 33 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPR 33 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChh
Confidence 455688999999999877 789999998763
No 104
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=46.88 E-value=31 Score=23.52 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 478999999999854
No 105
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.74 E-value=6.6 Score=25.55 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=30.7
Q ss_pred CceeEEEecCCCCCCCceEECCCCCceecCCCCC--CChhhhcCCCcEEecccccccc
Q 027973 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWFHPNCIN--MTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 137 ~~~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~--~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.....-+|.....+ -+.|..|..-||..|+. +... ..=.||.|...-.
T Consensus 14 ~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~-----~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSN-----AEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTC-----SSCCCTTTCSCCC
T ss_pred CCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhc-----CCCCCCCCcCcCC
Confidence 33444477766543 35788999999999995 2211 1134999986544
No 106
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=43.34 E-value=23 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCcEEccCCEEEEecCCC
Q 027973 19 ISKTIKPGDCVLMRPSEP 36 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~ 36 (216)
....++.||++++.++.+
T Consensus 87 ~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 87 TVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp CEEEEETTCEEEECTTCC
T ss_pred eEEEECCCCEEEECCCCe
Confidence 335789999999998774
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=41.56 E-value=1.7 Score=29.17 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=28.3
Q ss_pred EEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 141 YCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 141 ~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.-+|...+..+...+. -.|+..||..|+..- .. ....||.|.....
T Consensus 43 C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~w---l~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 43 CPICCSEYVKGDVATE-LPCHHYFHKPCVSIW---LQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp ETTTTEECCTTCEEEE-ETTTEEEEHHHHHHH---HT--TTCBCTTTCCBSS
T ss_pred CcccChhhcCCCcEEe-cCCCChHHHHHHHHH---HH--cCCcCcCcCccCC
Confidence 3377766544443333 349999999998521 11 2347999986543
No 108
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.15 E-value=13 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=32.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp 67 (216)
..|.+||.|.|..++ -.-+.|.|+++.. . .+.+.+.-|-|+
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~---e-~v~V~v~~fg~~ 46 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDG---N-KITIMPKHEDLK 46 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBT---T-EEEEEECCSSCC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeC---C-EEEEEEEecCCC
Confidence 468999999999998 5679999999864 2 577777666663
No 109
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.29 E-value=0.96 Score=29.80 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=22.4
Q ss_pred eEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 154 MVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 154 ~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.+.-..|+..||..|+..= +. ..-.||.|.....
T Consensus 42 ~~~~~~C~H~FH~~Ci~~W---l~--~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLW---VK--QNNRCPLCQQDWV 75 (81)
T ss_dssp CEEEETTSCEEEHHHHHHH---TT--TCCBCTTTCCBCC
T ss_pred EEEeCCCCCccChHHHHHH---HH--hCCCCCCcCCCcc
Confidence 4444479999999998521 11 1236999987654
No 110
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=40.08 E-value=24 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=16.2
Q ss_pred EEe-cCCcEEccCCEEEEecCCC
Q 027973 15 TVK-SISKTIKPGDCVLMRPSEP 36 (216)
Q Consensus 15 ~v~-g~~~~~~vGD~V~v~~~~~ 36 (216)
.++ |....++.||.+++.++.+
T Consensus 63 ~i~~g~~~~l~~GD~i~ip~g~~ 85 (101)
T 1o5u_A 63 TTEDGKKYVIEKGDLVTFPKGLR 85 (101)
T ss_dssp EETTCCEEEEETTCEEEECTTCE
T ss_pred EECCCCEEEECCCCEEEECCCCc
Confidence 455 5556789999999988763
No 111
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=38.90 E-value=5.4 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=27.4
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQK 193 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 193 (216)
+|......+.. +..-.|+..||..|+..-... ...||.|......
T Consensus 19 IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 19 ICLSILEEGED-VRRLPCMHLFHQVCVDQWLIT-----NKKCPICRVDIEA 63 (69)
T ss_dssp TTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHH-----CSBCTTTCSBSCS
T ss_pred eCCccccCCCc-EEEeCCCCHHHHHHHHHHHHc-----CCCCcCcCccccC
Confidence 67665543322 333469999999999522111 1349999876553
No 112
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=37.79 E-value=43 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..|.+|+.|++..+ ...|-|+|+++...
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 36899999999884 47899999999974
No 113
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.67 E-value=20 Score=21.79 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=20.5
Q ss_pred EECCCCCceecCCCC----CCCh--hhhcCCCcEEeccccccc
Q 027973 155 VQCEGCSDWFHPNCI----NMTA--EEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 155 i~C~~C~~w~H~~Cv----~~~~--~~~~~~~~~~C~~C~~~~ 191 (216)
-+|..|+--|...=- ++.+ .-.+.++.|.||.|....
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K 46 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGK 46 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBG
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCcH
Confidence 367778766665421 1111 011234789999997643
No 114
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=35.51 E-value=24 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=16.2
Q ss_pred EEecCC--cEEccCCEEEEecCC
Q 027973 15 TVKSIS--KTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~--~~~~vGD~V~v~~~~ 35 (216)
.+++.. ..++.||+|+|.++.
T Consensus 67 ~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 67 ECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EETTCSSCEEECTTEEEEECTTC
T ss_pred EECCEEEEEEECCCCEEEECCCC
Confidence 455555 678999999999875
No 115
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.31 E-value=35 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=24.0
Q ss_pred EEccCCEEEEecC--CCCCCCeEEEEEEEEecC
Q 027973 22 TIKPGDCVLMRPS--EPSKPSYVAKIERIESDA 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~--~~~~~~~IarI~~i~~~~ 52 (216)
.|.+|+-|++.-. +.....|-|+|+++....
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~ 41 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS 41 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSS
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC
Confidence 7899999999862 112578999999998743
No 116
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=35.14 E-value=19 Score=21.16 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=19.8
Q ss_pred EECCCCCceecCCCCCCChhhhcCCCcEEecccccc
Q 027973 155 VQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTE 190 (216)
Q Consensus 155 i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 190 (216)
-+|..|+--|...=-..++ -.+.++.|.||.|...
T Consensus 5 y~C~vCGyvyd~~~Gd~t~-f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVP-FDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCC-GGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcc-hhhCCCCCcCcCCCCc
Confidence 4688888766642111121 1112367999999754
No 117
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.27 E-value=38 Score=21.86 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
..+++||.|+-.=.| ...|-|+|.+|-.
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 368999999998774 6899999999964
No 118
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.25 E-value=4.1 Score=25.89 Aligned_cols=46 Identities=15% Similarity=0.491 Sum_probs=28.1
Q ss_pred EEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 141 YCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 141 ~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.-+|...+..+. .+..-.|+..||..|+..-.. ....||.|.....
T Consensus 26 C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 26 CVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLK-----ANRTCPICRADSG 71 (75)
T ss_dssp ETTTTEECCBTC-EEEEETTTEEEETTHHHHHHH-----HCSSCTTTCCCCC
T ss_pred CeECCcccCCCC-eEEEECCCCHhHHHHHHHHHH-----cCCcCcCcCCcCC
Confidence 337776654332 334446999999999953211 1236999976543
No 119
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=34.15 E-value=61 Score=19.50 Aligned_cols=27 Identities=30% Similarity=0.162 Sum_probs=21.4
Q ss_pred EEccCCEEEEecC-CCCCCCeEEEEEEEEe
Q 027973 22 TIKPGDCVLMRPS-EPSKPSYVAKIERIES 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~-~~~~~~~IarI~~i~~ 50 (216)
.+++||.++..=. | ...|=|+|+++-.
T Consensus 3 ~~~~G~~c~A~~s~D--g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED--GCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTT--SCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCC--CCEEEEEEEEEcC
Confidence 4789998888754 4 5789999999954
No 120
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=34.05 E-value=26 Score=21.05 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=9.7
Q ss_pred CCcEEecccccc
Q 027973 179 LDHFFCESCSTE 190 (216)
Q Consensus 179 ~~~~~C~~C~~~ 190 (216)
++.|.||.|...
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 478999999764
No 121
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=33.40 E-value=55 Score=23.28 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=24.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..|+.||.|.|..+. +.--.|+|.++...
T Consensus 41 ~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k 69 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD--FAGEEGEVINVDLD 69 (120)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEEecC--CCCCEEEEEEEECC
Confidence 478999999999987 45689999999964
No 122
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=33.24 E-value=38 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..+++||-|+-.=.| ..+|-|+|.+|-.+
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD 48 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC
Confidence 478999999999855 68999999999875
No 123
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=33.23 E-value=24 Score=24.66 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=16.1
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
.++|...+++.||+|+|.++.
T Consensus 73 ~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 73 STDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 455555678999999998875
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.59 E-value=12 Score=24.68 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=37.0
Q ss_pred CCCCCceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChh-hhcCCCcEEecccccccc
Q 027973 133 FNPDRVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAE-EAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 133 f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~-~~~~~~~~~C~~C~~~~~ 192 (216)
+.|+.....| .|....+....-..|-.|+..|...|...... +......-+|..|.....
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 4455555556 66666654445578999999999999863211 111225678999976554
No 125
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=32.47 E-value=21 Score=23.20 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=23.6
Q ss_pred EEccCCEEEEecCCC-CCCCeEEEEEEEEec
Q 027973 22 TIKPGDCVLMRPSEP-SKPSYVAKIERIESD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~-~~~~~IarI~~i~~~ 51 (216)
.|.+|+.|++.-.+. ....|-|+|+++...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 678999999997641 136799999998864
No 126
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=31.95 E-value=8.3 Score=32.99 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=29.9
Q ss_pred EecCCCCCCC--ceEECC--CCCceecCCCCCC--Chh----hhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDD--LMVQCE--GCSDWFHPNCINM--TAE----EAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~--~~i~C~--~C~~w~H~~Cv~~--~~~----~~~~~~~~~C~~C~~~~~ 192 (216)
||-....+++ .-..|+ .|+.-||..|+.- ... ..=+.-...||.|.....
T Consensus 313 ICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 313 ICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 5654433322 335687 8999999999942 111 111123468999987655
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.46 E-value=18 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.450 Sum_probs=36.4
Q ss_pred CCCCCceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChh-hhcCCCcEEeccccc
Q 027973 133 FNPDRVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAE-EAKRLDHFFCESCST 189 (216)
Q Consensus 133 f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~-~~~~~~~~~C~~C~~ 189 (216)
+.|+.....| .|..+.+....-.-|-.|+..|...|...... +......-+|..|..
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~ 121 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFN 121 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHH
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHH
Confidence 4566666666 67777665455578999999999999763211 111224678888854
No 128
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=31.34 E-value=1.1e+02 Score=21.93 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=24.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecCCC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARG 54 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~ 54 (216)
.|.+|.-|+..-+. .+|=|+|++||.....
T Consensus 7 ~f~~gE~VlcfHg~---~~YeAKIl~i~d~~~~ 36 (130)
T 3e9g_A 7 EFALGGRCLAFHGP---LMYEAKILKIWDPSSK 36 (130)
T ss_dssp CCCTTCEEEEEETT---EEEEEEEEEEEETTTT
T ss_pred cccCCCEEEEEeCC---cceeeEEEEeeCCCcc
Confidence 68999999999886 4899999999875444
No 129
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=30.58 E-value=26 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=22.5
Q ss_pred ceEECCCCCceecCCCC----CCChh--hhcCCCcEEeccccccc
Q 027973 153 LMVQCEGCSDWFHPNCI----NMTAE--EAKRLDHFFCESCSTEG 191 (216)
Q Consensus 153 ~~i~C~~C~~w~H~~Cv----~~~~~--~~~~~~~~~C~~C~~~~ 191 (216)
..-.|..|+-.|.+.=- ++.+. -.+.++.|.||.|....
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 78 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATK 78 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCG
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCH
Confidence 35678888877765321 11110 11224789999997643
No 130
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=30.56 E-value=11 Score=26.83 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 158 EGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 158 ~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
..|+..||..|+..=.. ..-.||.|....
T Consensus 82 ~~C~H~FH~~CI~~Wl~-----~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLK-----TRQVCPLDNREW 110 (117)
T ss_dssp ----------------------------------
T ss_pred CCcCceEcHHHHHHHHH-----cCCcCCCCCCee
Confidence 47999999999963211 135699997653
No 131
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=29.73 E-value=53 Score=19.30 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=19.5
Q ss_pred EccCCEEEEec-CCCCCCCeEEEEEEEEec
Q 027973 23 IKPGDCVLMRP-SEPSKPSYVAKIERIESD 51 (216)
Q Consensus 23 ~~vGD~V~v~~-~~~~~~~~IarI~~i~~~ 51 (216)
+++||.+...- +| ...|=|+|+++..+
T Consensus 2 wk~G~~c~A~~s~D--g~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYWED--NKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEETTT--TEEEEEEEEEC--C
T ss_pred CCCCCEEEEEECCC--CCEEEEEEEEEeCC
Confidence 57899888885 44 56889999998653
No 132
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.65 E-value=45 Score=24.30 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=33.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp 67 (216)
..+.+||.|.|..+. -.-+.|.|.++..++ + .+.|.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~k-~-~v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDESK-D-EVVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETTT-T-EEEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCCC-C-EEEEEEEeccee
Confidence 367899999999987 466899999998743 3 577777777664
No 133
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.61 E-value=27 Score=21.23 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=20.1
Q ss_pred EECCCCCceecCCCC----CCChh--hhcCCCcEEeccccccc
Q 027973 155 VQCEGCSDWFHPNCI----NMTAE--EAKRLDHFFCESCSTEG 191 (216)
Q Consensus 155 i~C~~C~~w~H~~Cv----~~~~~--~~~~~~~~~C~~C~~~~ 191 (216)
-.|..|+--|...== ++.+. -.+.++.|.||.|....
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~K 46 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGK 46 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCCG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCCH
Confidence 467777766654321 11110 11223789999997643
No 134
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=29.42 E-value=29 Score=25.68 Aligned_cols=21 Identities=5% Similarity=0.241 Sum_probs=16.1
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
+++|...+++.||+++|.++-
T Consensus 98 ~i~g~~~~l~~GD~i~iP~G~ 118 (151)
T 4axo_A 98 IIDGRKVSASSGELIFIPKGS 118 (151)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEEcCCCEEEECCCC
Confidence 455655677899999999875
No 135
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.34 E-value=31 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=21.2
Q ss_pred EECCCCCceecCCCC----CCCh--hhhcCCCcEEecccccccc
Q 027973 155 VQCEGCSDWFHPNCI----NMTA--EEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 155 i~C~~C~~w~H~~Cv----~~~~--~~~~~~~~~~C~~C~~~~~ 192 (216)
-.|..|+--|.+.== ++.+ .-.+.++.|.||.|.....
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~ 51 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKN 51 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGG
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHH
Confidence 568888766654321 1111 0012247899999976544
No 136
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.78 E-value=66 Score=22.88 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
..|+.||-|.|..+. +.--.|+|.++....
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLKR 73 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETTT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEecC
Confidence 468899999999987 456789999998743
No 137
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.77 E-value=34 Score=20.48 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.6
Q ss_pred CCcEEecccccc
Q 027973 179 LDHFFCESCSTE 190 (216)
Q Consensus 179 ~~~~~C~~C~~~ 190 (216)
++.|.||.|...
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 478999999764
No 138
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=28.44 E-value=30 Score=24.47 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
.|+.||.|.|.++. +.--.|+|.++....
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 43 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPRD 43 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETTT
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECCC
Confidence 57899999999987 566899999998643
No 139
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=28.09 E-value=15 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=17.7
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEE
Q 027973 20 SKTIKPGDCVLMRPSEPSKPSYVAKI 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~IarI 45 (216)
...++.||.|.|......+..|.|++
T Consensus 19 eLs~~~Gd~i~v~~~~~~~~W~~g~~ 44 (60)
T 2x3w_D 19 ELSFKAGDELTKLGEEDEQGWCRGRL 44 (60)
T ss_dssp BCCBCTTCEEEECSCCCSSSEEEEEC
T ss_pred cccCCCCCEEEEEEccCCCCceEEEe
Confidence 46789999999987643234566653
No 140
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=28.03 E-value=1e+02 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=28.4
Q ss_pred EecCCcEEccCCEEEEecCCC--CCCCeEEEEEEEEecC
Q 027973 16 VKSISKTIKPGDCVLMRPSEP--SKPSYVAKIERIESDA 52 (216)
Q Consensus 16 v~g~~~~~~vGD~V~v~~~~~--~~~~~IarI~~i~~~~ 52 (216)
+.|....|.+|+-|++.-+|+ ...+|=|+|++|....
T Consensus 13 ~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 13 LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 355556899999999998752 2367999999998753
No 141
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=27.64 E-value=46 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.7
Q ss_pred EccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 23 IKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
+.+||.|.|...+- ..--|+|+.+..
T Consensus 71 i~~GD~V~ve~~~~--~~~kG~I~~~~~ 96 (117)
T 2oqk_A 71 VNPGDIVLVSLRDF--QDSKGDIILKYT 96 (117)
T ss_dssp CCTTCEEEEEECTT--CTTEEEEEEECC
T ss_pred CCCCCEEEEEEEcC--CCCeEEEEEEec
Confidence 34899999987641 233678887776
No 142
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.46 E-value=27 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=21.7
Q ss_pred eEECCCCCceecCCCC----CCChhh--hcCCCcEEecccccccc
Q 027973 154 MVQCEGCSDWFHPNCI----NMTAEE--AKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 154 ~i~C~~C~~w~H~~Cv----~~~~~~--~~~~~~~~C~~C~~~~~ 192 (216)
.-.|..|+--|-+.== ++.+.. .+.++.|.||.|.....
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGG
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 4678888876665321 111110 12237899999976443
No 143
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=27.35 E-value=1.4e+02 Score=19.91 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=23.4
Q ss_pred eEEEecCCcEEccCCEEEEecCCCCCCCeEEEEEEEE
Q 027973 13 SYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (216)
Q Consensus 13 ~~~v~g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~ 49 (216)
.+.+++.+-..++||.|.|..--|-+..==-++.+|.
T Consensus 40 k~~aHDe~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv 76 (89)
T 1qd7_I 40 KYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIV 76 (89)
T ss_pred EEEEeCCccCCCCCCEEEEEEcccCCCCEEEEEEEEE
Confidence 4556666668999999999987654433222334443
No 144
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=27.09 E-value=34 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=16.2
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
+++|...+++.||++++.++.
T Consensus 89 ~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 89 RHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEECCCcEEEECCCC
Confidence 455555678999999999876
No 145
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.99 E-value=16 Score=29.26 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=29.5
Q ss_pred eeEEEecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 139 AVYCKCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 139 ~~~C~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
..+.+|...-.+ -+.|..|+.-||..|+..-- ..-..-.||.|...-
T Consensus 181 ~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~---~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 181 KICNICHSLLIQ---GQSCETCGIRMHLPCVAKYF---QSNAEPRCPHCNDYW 227 (238)
T ss_dssp CBCTTTCSBCSS---CEECSSSCCEECHHHHHHHT---TTCSSCBCTTTCCBC
T ss_pred CcCcchhhHHhC---CcccCccChHHHHHHHHHHH---HhCCCCCCCCCCCCC
Confidence 333366655443 38899999999999994210 000234699997643
No 146
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.69 E-value=6.3 Score=25.60 Aligned_cols=47 Identities=15% Similarity=0.363 Sum_probs=28.9
Q ss_pred EecCCCCCCCc-eEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDL-MVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~-~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|...+..... .+.- .|+..||..|+..-.... .....||.|.....
T Consensus 20 IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 20 ICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITR 67 (88)
T ss_dssp TTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBC
T ss_pred cCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCccc
Confidence 67666643332 3332 699999999995321111 13478999987654
No 147
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=26.67 E-value=1.3e+02 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
.+.+||.|+....+ ..+|=|+|++|..
T Consensus 5 ~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 5 SITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp CCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred eeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 57999999988776 7899999999855
No 148
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=26.43 E-value=42 Score=22.48 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=16.1
Q ss_pred EEecCCcEEccCCEEEEecCCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSEP 36 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~~ 36 (216)
.+++....+..||.+++.++.+
T Consensus 72 ~i~~~~~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 72 TFDDQKIDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EETTEEEEECTTCEEEECTTCC
T ss_pred EECCEEEEecCCCEEEECCCCc
Confidence 4455555778899999998763
No 149
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.43 E-value=19 Score=26.17 Aligned_cols=51 Identities=20% Similarity=0.466 Sum_probs=35.9
Q ss_pred EE-EecCCCC-CCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 141 YC-KCEMPYN-PDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 141 ~C-~C~~~~~-~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.| +|.++.. -+..-..|..|..-+...|-+..... .+...|.|..|.....
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~-~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-RPHPVWLCKICLEQRE 109 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-SSSCCEEEHHHHHHHH
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCCccCCC-CCccceechhhHHHHH
Confidence 44 6777763 23455899999999999998754221 1226799999988765
No 150
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.87 E-value=74 Score=20.67 Aligned_cols=61 Identities=20% Similarity=0.462 Sum_probs=39.5
Q ss_pred CCCCCCceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhc---------CCCcEEecccccccc
Q 027973 132 AFNPDRVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAK---------RLDHFFCESCSTEGQ 192 (216)
Q Consensus 132 ~f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~---------~~~~~~C~~C~~~~~ 192 (216)
.+.|+.....| .|..+.+....---|-.|+..|...|.......+. ....-+|..|.....
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHh
Confidence 45566666677 67777765455578999999999999753211100 113568998876544
No 151
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=25.77 E-value=65 Score=22.49 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
..|+.||.|.|.++. +.--.|+|.++....
T Consensus 5 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp CSCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred cccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 357899999999987 456789999998754
No 152
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=25.60 E-value=15 Score=27.11 Aligned_cols=42 Identities=17% Similarity=0.341 Sum_probs=27.9
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEeccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEG 191 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 191 (216)
+|..... ..+....|+..||..|+..--. . ....||.|....
T Consensus 59 IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~---~-~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 59 ICLDMLK---NTMTTKECLHRFCADCIITALR---S-GNKECPTCRKKL 100 (165)
T ss_dssp TTSSBCS---SEEEETTTCCEEEHHHHHHHHH---T-TCCBCTTTCCBC
T ss_pred ccChHhh---CcCEeCCCCChhHHHHHHHHHH---h-CcCCCCCCCCcC
Confidence 6665543 3456678999999999953211 1 246799998664
No 153
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.47 E-value=65 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCCCCCeE-EEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYV-AKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I-arI~~i~~~~ 52 (216)
..|+.||.|.|..+. +.--. |+|..+....
T Consensus 47 ~~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGH--YKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CBCCTTCEEEECSST--TTTCCSEEEEEEETTT
T ss_pred cccCCCCEEEEeecC--CCCcceeEEEEEECCC
Confidence 478999999999987 44566 9999998643
No 154
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=25.42 E-value=72 Score=19.97 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=20.2
Q ss_pred CCcEEccCCEEEEecCCCCCCCeEEEE
Q 027973 19 ISKTIKPGDCVLMRPSEPSKPSYVAKI 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~IarI 45 (216)
+...++.||.|.|...+..+.-|.|++
T Consensus 33 ~eLsf~~Gd~i~v~~~~~~~gWw~g~~ 59 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAEAEHNWWEGRN 59 (78)
T ss_dssp CCCCBCTTCEEEEEECCSSCSCEEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCCeEEEEE
Confidence 446789999999998742356788875
No 155
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=25.33 E-value=76 Score=22.19 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCC--CCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPS--KPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~--~~~~IarI~~i~~~~ 52 (216)
..|.+|+-|+..-.+++ ...|=|+|+++....
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~ 51 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEecc
Confidence 46899999999876642 346899999997643
No 156
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=24.29 E-value=11 Score=25.50 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=29.1
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|.... ...+.|..|+..||..|+..--.. ....||.|.....
T Consensus 27 IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 27 ICMEKL---RDARLCPHCSKLCCFSCIRRWLTE----QRAQCPHCRAPLQ 69 (100)
T ss_dssp TTCSBC---SSEEECTTTCCEEEHHHHHHHHHH----TCSBCTTTCCBCC
T ss_pred cCCccc---cCccccCCCCChhhHHHHHHHHHH----CcCCCCCCCCcCC
Confidence 555544 356788899999999999532111 1257999987654
No 157
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=24.00 E-value=91 Score=21.77 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=25.3
Q ss_pred cCCcEEccCCEEEEecCCCC--CCCeEEEEEEEEecC
Q 027973 18 SISKTIKPGDCVLMRPSEPS--KPSYVAKIERIESDA 52 (216)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~--~~~~IarI~~i~~~~ 52 (216)
|....|.+|+-|++..++++ ...|-|+|++|....
T Consensus 15 ~~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 33347899999999977532 256999999998754
No 158
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=23.97 E-value=35 Score=20.62 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=25.9
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|..... ..+.-..|+..||..|+..-.. ....||.|.....
T Consensus 10 IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 10 ICLEDPS---NYSMALPCLHAFCYVCITRWIR-----QNPTCPLCKVPVE 51 (68)
T ss_dssp SCCSCCC---SCEEETTTTEEESTTHHHHHHH-----HSCSTTTTCCCCC
T ss_pred eCCcccc---CCcEecCCCCeeHHHHHHHHHh-----CcCcCcCCChhhH
Confidence 5655442 1123456999999999953211 1246999987665
No 159
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=23.85 E-value=47 Score=21.64 Aligned_cols=34 Identities=21% Similarity=0.817 Sum_probs=23.5
Q ss_pred ceEECC-CCCceecCCCCCCChhhh----cCCCcEEecc
Q 027973 153 LMVQCE-GCSDWFHPNCINMTAEEA----KRLDHFFCES 186 (216)
Q Consensus 153 ~~i~C~-~C~~w~H~~Cv~~~~~~~----~~~~~~~C~~ 186 (216)
-||.|. .-+.|.|..|..+++..+ +.-.+|+|..
T Consensus 37 ami~cs~g~ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 37 AMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp CCEECCSSSCCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred hhhhcCCCcchHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 488884 349999999999986433 2235677753
No 160
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.35 E-value=1.3e+02 Score=20.25 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=14.2
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
.++|....+..||.++|.++.
T Consensus 68 ~i~~~~~~l~~Gd~~~i~~~~ 88 (128)
T 4i4a_A 68 RINDEDFPVTKGDLIIIPLDS 88 (128)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEECCCcEEEECCCC
Confidence 344444566888888888765
No 161
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.27 E-value=2.8e+02 Score=22.28 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=32.2
Q ss_pred EEe-cCCcEEccCCEEEEecCCCCCCCeEEEEEEEEecCCCCeEEEEEEEEeecCCCCCCcccccCCCeEEEeCccc
Q 027973 15 TVK-SISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHHD 90 (216)
Q Consensus 15 ~v~-g~~~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~ELf~s~~~d 90 (216)
.++ |...+++.||++|+.++.+ ..+- . ... +++.|+-++-+-..+ ..-+.|.++..|
T Consensus 104 ~l~~g~~~~L~~Gds~y~p~~~~---H~~~------N-~~~----Ar~l~V~k~y~~~~g-----~~p~~~v~~~~d 161 (266)
T 4e2q_A 104 TNTSSSSKKLTVDSYAYLPPNFH---HSLD------C-VES----ATLVVFERRYEYLGS-----HTTELIVGSTDK 161 (266)
T ss_dssp EC--CCCEEECTTEEEEECTTCC---CEEE------E-SSC----EEEEEEEEECCCCTT-----CCCCCEEEEGGG
T ss_pred EECCCcEEEEcCCCEEEECCCCC---EEEE------e-CCC----EEEEEEEeEeeeCCC-----CCCceeeCcHhH
Confidence 455 5556889999999998763 2221 1 122 667777555544333 234556554443
No 162
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=23.09 E-value=45 Score=20.42 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=17.8
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEE
Q 027973 20 SKTIKPGDCVLMRPSEPSKPSYVAKI 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~IarI 45 (216)
...++.||.|.|......+..|.|+.
T Consensus 22 eLs~~~Gd~i~v~~~~~~~~Ww~g~~ 47 (71)
T 2jt4_A 22 ELTIKSGDKVYILDDKKSKDWWMCQL 47 (71)
T ss_dssp BCCBCTTCEEEEEESSSCSSEEEEEE
T ss_pred cccCCCCCEEEEEECCCCCCCEEEEE
Confidence 45788999999988642244566654
No 163
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.94 E-value=79 Score=20.15 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=21.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..|++||+|-|..+. ..--.|.|..+..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 368999999999986 34567777777643
No 164
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.89 E-value=63 Score=21.05 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=38.8
Q ss_pred CCCCCCceeEE-EecCCCCCCCceEECCCCCceecCCCCCCChhhhc---CCCcEEecccccccc
Q 027973 132 AFNPDRVAVYC-KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAK---RLDHFFCESCSTEGQ 192 (216)
Q Consensus 132 ~f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~---~~~~~~C~~C~~~~~ 192 (216)
.+.|+.....| .|....+....---|-.|+..|...|.......+. ....-+|..|.....
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred ccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 34566666667 67777665555678999999999999864321111 113457888865443
No 165
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=22.88 E-value=69 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=15.9
Q ss_pred EEecCCc-EEccCCEEEEecCC
Q 027973 15 TVKSISK-TIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~-~~~vGD~V~v~~~~ 35 (216)
.+++... .+..||.+++.++.
T Consensus 61 ~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 61 TLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EETTSCCEEEETTCEEEECTTC
T ss_pred EECCEEEEEeCCCCEEEECCCC
Confidence 4555666 78899999988875
No 166
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.86 E-value=7.6 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.471 Sum_probs=21.5
Q ss_pred EECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 155 VQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 155 i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+.-..|+..||..|+..-... ...||.|.....
T Consensus 35 ~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 35 IVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp EEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred eEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 344579999999999522111 235999986544
No 167
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.80 E-value=7.1 Score=24.46 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=25.8
Q ss_pred EecCCCCCCCceEECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 143 KCEMPYNPDDLMVQCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 143 ~C~~~~~~~~~~i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
+|..... ..+.- .|+..||..|+..-.. ....||.|.....
T Consensus 20 IC~~~~~---~~~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 20 ICLQTCV---HPVSL-PCKHVFCYLCVKGASW-----LGKRCALCRQEIP 60 (71)
T ss_dssp SSSSBCS---SEEEE-TTTEEEEHHHHHHCTT-----CSSBCSSSCCBCC
T ss_pred cCCcccC---CCEEc-cCCCHHHHHHHHHHHH-----CCCcCcCcCchhC
Confidence 6665542 22222 5999999999852111 2257999988766
No 168
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.80 E-value=2e+02 Score=22.82 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=29.2
Q ss_pred cEEccCCEEEEecCCC--CCCCeEEEEEEEEecCCCCeEEEEEE
Q 027973 21 KTIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVR 62 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~IarI~~i~~~~~~~~~~v~v~ 62 (216)
..+++||.|.-..-+. +....||+|.++..+..+....+.|.
T Consensus 168 ~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~ 211 (255)
T 2j5u_A 168 MKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIK 211 (255)
T ss_dssp SCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEE
Confidence 3689999888766442 34578999999999876633334443
No 169
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=22.66 E-value=49 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.2
Q ss_pred EecCCcEEccCCEEEEecCC
Q 027973 16 VKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 16 v~g~~~~~~vGD~V~v~~~~ 35 (216)
+++....+..||.+++.++.
T Consensus 64 ~~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 64 VGEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp ETTEEEEECTTCEEEECTTS
T ss_pred ECCEEEEeCCCCEEEECCCC
Confidence 33344467888888887765
No 170
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=22.00 E-value=1.1e+02 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=24.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
..|+.||-|.|.++.. .--.|+|..+....
T Consensus 47 ~~IkKGD~V~Vi~Gkd--KGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSY--KGREGKVVQVYRRR 76 (150)
T ss_dssp EECCSSSEEEECSSTT--TTCEEEEEEEETTT
T ss_pred cccCCCCEEEEeecCC--CCccceEEEEEcCC
Confidence 3789999999999984 44579999998743
No 171
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=27.14 E-value=20 Score=23.94 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
..|.+|+.|++.-++ ..|-|+|+++...
T Consensus 11 ~~~~~Gekv~~~~~~---~~y~AkIl~i~~~ 38 (85)
T 2lrq_A 11 TLFVDGERVLCFHGP---LIYEAKVLKTKPD 38 (85)
Confidence 478999999999854 5699999999874
No 172
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=21.57 E-value=49 Score=24.83 Aligned_cols=21 Identities=14% Similarity=-0.046 Sum_probs=13.5
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
+++|...++..||++||.++.
T Consensus 124 tl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 124 TVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEEcCCCEEEECCCC
Confidence 444444556778888877764
No 173
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=21.37 E-value=1e+02 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=24.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEEEEEecC
Q 027973 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (216)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~IarI~~i~~~~ 52 (216)
..|+.||-|.|.++.. .--.|+|..+....
T Consensus 48 ~~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSK--KGQEGKISSVYRLK 77 (127)
T ss_dssp EECCTTCEEEECSSTT--TTCEEEEEEEEGGG
T ss_pred ccccCCCEEEEeecCC--CCccceEEEEECCC
Confidence 4688999999999984 44579999998743
No 174
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=21.37 E-value=50 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=15.7
Q ss_pred EEec-CCcEEccCCEEEEecCC
Q 027973 15 TVKS-ISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g-~~~~~~vGD~V~v~~~~ 35 (216)
.+++ ....+..||.+++.++.
T Consensus 62 ~~~~~~~~~l~~Gd~~~ip~~~ 83 (107)
T 2i45_A 62 DFADGGSMTIREGEMAVVPKSV 83 (107)
T ss_dssp EETTSCEEEECTTEEEEECTTC
T ss_pred EECCCcEEEECCCCEEEECCCC
Confidence 4555 55678899999988876
No 175
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.31 E-value=82 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEe
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~ 50 (216)
.+++||.|++..+.. ......+|.+|..
T Consensus 91 ~l~~GD~v~~~~~~~-~~~~~~~V~~v~~ 118 (145)
T 1at0_A 91 RIEEKNQVLVRDVET-GELRPQRVVKVGS 118 (145)
T ss_dssp GCCTTCEEEEECTTT-CCEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCCC-CCEEEEEEEEEEE
Confidence 579999999998732 3366777777765
No 176
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=21.12 E-value=61 Score=21.54 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=14.6
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
.++|....+..||.+++.++.
T Consensus 68 ~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 68 NVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECcCC
Confidence 344444567888888888765
No 177
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=21.11 E-value=84 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEEEEEec
Q 027973 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (216)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~IarI~~i~~~ 51 (216)
.|+.||-|.|.++. +.--.|+|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 46889999999987 45678999999975
No 178
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.84 E-value=43 Score=19.68 Aligned_cols=26 Identities=15% Similarity=0.457 Sum_probs=19.2
Q ss_pred CCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 159 GCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 159 ~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.|+..|+..|+.. ....||.|.....
T Consensus 23 ~CgH~fC~~Ci~~--------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 23 PCLHTLCSGCLEA--------SGMQCPICQAPWP 48 (56)
T ss_dssp TTSCCSBTTTCSS--------SSSSCSSCCSSSS
T ss_pred CCCCcccHHHHcc--------CCCCCCcCCcEee
Confidence 5888999999864 1245999977654
No 179
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=20.59 E-value=45 Score=22.68 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=14.9
Q ss_pred EEecCCcEEccCCEEEEecCC
Q 027973 15 TVKSISKTIKPGDCVLMRPSE 35 (216)
Q Consensus 15 ~v~g~~~~~~vGD~V~v~~~~ 35 (216)
.+++....++.||.++|.++.
T Consensus 70 ~i~~~~~~l~~Gd~i~ip~~~ 90 (114)
T 3fjs_A 70 GVDGAQRRLHQGDLLYLGAGA 90 (114)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 445555567888888888875
No 180
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=20.30 E-value=53 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEE
Q 027973 20 SKTIKPGDCVLMRPSEPSKPSYVAKI 45 (216)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~IarI 45 (216)
...++.||.|.|......+.-|.|+.
T Consensus 16 eLs~~~Gd~i~v~~~~~~~~W~~g~~ 41 (54)
T 2a28_A 16 EISIDPGDIITVIRGDDGSGWTYGEC 41 (54)
T ss_dssp BCCBCTTCEEEEEECCCSSSEEEEEE
T ss_pred CccCCCCCEEEEEEecCCCCEEEEEE
Confidence 35789999999988763234566664
No 181
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.08 E-value=6.5 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=21.7
Q ss_pred ECCCCCceecCCCCCCChhhhcCCCcEEecccccccc
Q 027973 156 QCEGCSDWFHPNCINMTAEEAKRLDHFFCESCSTEGQ 192 (216)
Q Consensus 156 ~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 192 (216)
.-..|+..||..|+..= +. ....||.|.....
T Consensus 69 ~~~~C~H~FH~~Ci~~W---l~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRW---LK--TRQVCPLDNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHH---HT--TCSBCSSSCSBCC
T ss_pred eecccCcEECHHHHHHH---HH--cCCcCcCCCCcce
Confidence 33579999999998421 11 2356999987643
No 182
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=83 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=19.3
Q ss_pred CCcEEccCCEEEEecCCC-CCCCeEEEE
Q 027973 19 ISKTIKPGDCVLMRPSEP-SKPSYVAKI 45 (216)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~-~~~~~IarI 45 (216)
+...++.||.|.|..... ....|.|+.
T Consensus 32 ~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~ 59 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKTDSHFDWWEGKL 59 (80)
T ss_dssp TBCEECTTCEEEEEECCSCSSSEEEEEE
T ss_pred CeeeEcCCCEEEEeECcCCCCCeEEEEE
Confidence 356889999999988653 245566665
Done!