BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027975
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From
Arabidopsis
pdb|3MAL|B Chain B, Crystal Structure Of The Sdf2-Like Protein From
Arabidopsis
Length = 199
Score = 326 bits (836), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 147/184 (79%), Positives = 168/184 (91%)
Query: 32 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGAS 91
E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G +
Sbjct: 14 EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTT 73
Query: 92 AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEG 151
KQGD +KSG IRLQHM+TRKWLHSHLHASPISGNLE+SCFG + SDTGD+W+++IEG
Sbjct: 74 EKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEG 133
Query: 152 SGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP 211
SGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP
Sbjct: 134 SGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLP 193
Query: 212 VTES 215
+ ES
Sbjct: 194 LNES 197
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 90 ASAKQGDTIKSGTIIRLQHMRTRKWLHSH-LHASPISGNLEISCFGGEEESDTGDYWRV- 147
AS K+G I G+ I+L H +T+ LHSH + SG ++ F G +S++ YW V
Sbjct: 10 ASGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNS--YWIVK 67
Query: 148 ----MIEGSGKTWRQDQRIRLQHVDTGGYLHSH 176
E G + IRLQH+ T +LHSH
Sbjct: 68 PVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSH 100
>pdb|1T9F|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Structure
Of A Protein With Unknown Function
Length = 187
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 36 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQG 95
+T +VLK ++ RLHSH+V YGSGSGQQSVT + DD NS+W + P L A +G
Sbjct: 7 VTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRG 66
Query: 96 DTIKSGTIIRLQHMRTRKWLHSHLHASPISG-NLEISCFGGEEESDTGDYWRVMIEGSGK 154
D IK G IRL+H+ T +LHSH +P+S + E+S FG E ESDTGD W V+ +G
Sbjct: 67 DAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVIC--NGD 124
Query: 155 TWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 210
W + ++ +L+H TG YL +++ R GQ+EV G + W AEG+Y+
Sbjct: 125 EWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSAWKVAEGIYI 180
>pdb|3JRR|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
pdb|3JRR|B Chain B, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
Length = 226
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 95 GDTIKSGTIIRLQHMRTRKWL 115
GD +K G++I+L HM++ K+L
Sbjct: 115 GDVVKYGSVIQLLHMKSNKYL 135
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 77 DANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLH 120
+AN+ W + + S + D +K G ++RL H K+L + H
Sbjct: 213 NANTSWKIVLFMKWSDNKDDILKGGDVVRLFHAEQEKFLTADEH 256
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 68 SVTGFPDVDDANSYWIVKPILGASAKQGDT-IKSGTIIRLQHMRTRKWLHS 117
S+ P+ +D +S + + P + + GD+ + + +RL+H+ T W+HS
Sbjct: 354 SLVSVPEGNDISSIFELDP---TTLRGGDSLVPRNSYVRLRHLATNTWVHS 401
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 68 SVTGFPDVDDANSYWIVKPILGASAKQGDT-IKSGTIIRLQHMRTRKWLHS 117
S+ P+ +D +S + + P + + GD+ + + +RL+H+ T W+HS
Sbjct: 337 SLVSVPEGNDISSIFELDP---TTLRGGDSLVPRNSYVRLRHLCTNTWVHS 384
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 77 DANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLH 120
+ N+ W + + S + D +K G ++RL H K+L H
Sbjct: 211 NCNTSWKIVLFMKWSDNKDDILKGGDVVRLFHAEQEKFLTCDEH 254
>pdb|1N4K|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor Binding Core In Complex With Ip3
Length = 381
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 68 SVTGFPDVDDANSYWIVKPILGASAKQGDT-IKSGTIIRLQHMRTRKWLHS 117
S+ P+ +D +S + + P + + GD+ + + +RL+H+ T W+HS
Sbjct: 131 SLVSVPEGNDISSIFELDP---TTLRGGDSLVPRNSYVRLRHLCTNTWVHS 178
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 74 DVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCF 133
D + W + PI S + + G I+RL H + L S L +
Sbjct: 192 DASFMQTLWNMNPI--CSCCEEGYVTGGHILRLFHGHMDECLTISAADSDDQRRL-VYYE 248
Query: 134 GGEEESDTGDYWRV---MIEGSGKTWRQDQRIRLQHVDTGGYL 173
GG + WR+ I SG R Q +R++HV TG YL
Sbjct: 249 GGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRYL 291
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 42 LKLMHEKTKFRLHSHEVPY-------GSGSGQQSVTGFPDVDDANSYWIVK 85
+K +K +++++ E P S +G+Q + G+ + N YW ++
Sbjct: 311 IKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTESGSNNQYWTIE 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,742,541
Number of Sequences: 62578
Number of extensions: 304562
Number of successful extensions: 503
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 26
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)