Query 027975
Match_columns 216
No_of_seqs 132 out of 1122
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3359 Dolichyl-phosphate-man 100.0 8.6E-57 1.9E-61 418.5 21.5 207 3-210 273-502 (723)
2 COG1928 PMT1 Dolichyl-phosphat 100.0 1.2E-49 2.6E-54 370.3 17.7 206 3-210 261-482 (699)
3 KOG3358 Uncharacterized secret 100.0 1.6E-45 3.5E-50 289.8 13.5 177 35-213 25-201 (211)
4 PF02815 MIR: MIR domain; Int 100.0 3E-34 6.5E-39 234.9 5.5 155 51-209 1-186 (190)
5 KOG3359 Dolichyl-phosphate-man 99.9 1.9E-23 4.1E-28 195.8 12.9 122 30-153 375-502 (723)
6 COG1928 PMT1 Dolichyl-phosphat 99.8 7.6E-21 1.6E-25 178.1 8.2 146 32-180 359-515 (699)
7 KOG3358 Uncharacterized secret 99.8 7E-20 1.5E-24 144.9 11.0 107 30-147 82-192 (211)
8 PF02815 MIR: MIR domain; Int 99.7 4.4E-18 9.5E-23 139.2 5.2 112 32-149 61-183 (190)
9 smart00472 MIR Domain in ryano 99.6 4E-15 8.7E-20 98.6 6.2 53 34-86 2-56 (57)
10 smart00472 MIR Domain in ryano 99.5 1.1E-13 2.5E-18 91.5 6.2 53 154-206 2-56 (57)
11 PF08709 Ins145_P3_rec: Inosit 99.0 1.8E-09 3.9E-14 90.2 10.4 112 33-151 95-209 (214)
12 KOG3533 Inositol 1,4,5-trispho 99.0 4.7E-10 1E-14 110.2 7.2 142 29-178 174-326 (2706)
13 KOG3533 Inositol 1,4,5-trispho 98.9 4.4E-09 9.6E-14 103.6 8.1 165 33-211 117-298 (2706)
14 KOG2243 Ca2+ release channel ( 98.7 1.3E-08 2.7E-13 100.3 4.4 135 29-176 169-310 (5019)
15 PF08709 Ins145_P3_rec: Inosit 98.4 1.3E-06 2.9E-11 72.8 8.1 163 33-207 3-208 (214)
16 PF04601 DUF569: Protein of un 98.1 0.00024 5.1E-09 55.5 14.1 125 37-194 5-130 (142)
17 PF04601 DUF569: Protein of un 96.1 0.11 2.5E-06 40.6 10.7 90 99-204 5-96 (142)
18 KOG2243 Ca2+ release channel ( 95.8 0.0095 2.1E-07 60.6 4.1 164 30-207 108-281 (5019)
19 PF14200 RicinB_lectin_2: Rici 95.1 0.54 1.2E-05 34.1 10.7 102 79-205 2-105 (105)
20 cd00257 Fascin Fascin-like dom 93.8 2 4.3E-05 31.8 14.2 115 41-203 3-118 (119)
21 PF14200 RicinB_lectin_2: Rici 91.9 2.7 5.9E-05 30.3 9.5 92 39-148 14-105 (105)
22 PF00167 FGF: Fibroblast growt 89.5 4.7 0.0001 30.2 9.2 57 104-177 3-59 (122)
23 PF06268 Fascin: Fascin domain 83.3 16 0.00034 26.8 10.5 98 67-203 12-110 (111)
24 cd00058 FGF Acidic and basic f 82.0 13 0.00027 28.2 8.1 51 112-178 8-58 (123)
25 KOG3743 Recombination signal b 76.7 5.7 0.00012 37.5 5.5 80 31-115 312-397 (622)
26 smart00442 FGF Acidic and basi 72.3 40 0.00087 25.6 9.0 53 110-178 10-62 (126)
27 PF03498 CDtoxinA: Cytolethal 68.2 29 0.00063 27.4 7.0 133 42-206 2-143 (150)
28 PF00167 FGF: Fibroblast growt 64.9 43 0.00092 24.9 7.2 99 42-178 3-103 (122)
29 cd00257 Fascin Fascin-like dom 51.9 90 0.0019 22.7 9.7 58 103-177 3-60 (119)
30 PF09270 BTD: Beta-trefoil DNA 43.5 86 0.0019 25.0 5.9 74 36-115 3-87 (158)
31 cd00058 FGF Acidic and basic f 39.0 91 0.002 23.5 5.3 50 50-119 8-57 (123)
32 KOG4489 Uncharacterized conser 38.0 30 0.00066 24.1 2.2 20 4-23 48-67 (87)
33 PF12634 Inp1: Inheritance of 34.3 1E+02 0.0022 24.2 4.9 50 102-151 63-121 (145)
34 smart00791 Agglutinin Amaranth 26.6 1.7E+02 0.0038 22.7 4.9 24 97-120 90-114 (139)
35 smart00442 FGF Acidic and basi 26.1 1.8E+02 0.0039 22.0 5.0 52 48-119 10-61 (126)
36 PF06229 FRG1: FRG1-like famil 25.2 3.8E+02 0.0083 21.9 7.9 72 77-177 25-96 (191)
37 TIGR02375 pseudoazurin pseudoa 22.5 1.2E+02 0.0027 22.6 3.5 22 29-50 12-33 (116)
No 1
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-57 Score=418.53 Aligned_cols=207 Identities=35% Similarity=0.508 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCch-hhc------cCC-CCeeeeCCEEEEEeCCC-CCCeeeecccCCCC-CCccEEEee
Q 027975 3 MVFFALAVFLFLGLNLDESSPSSA-SAA------SSE-TVEITYGTVLKLMHEKT-KFRLHSHEVPYGSG-SGQQSVTGF 72 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~s~~-q~~------~~~-~~~V~~Gd~I~L~h~~T-~~~LhSh~~~y~~~-s~~q~Vt~~ 72 (216)
+++|++||.+|.+|||||+||||+ ||. ..+ ++.|.+|++|+|+|..+ ++|||||.+.||.| |+|||||||
T Consensus 273 l~~F~vHf~~l~~sGpgDs~mss~FQa~L~G~~i~~~~p~~v~~GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y 352 (723)
T KOG3359|consen 273 LLFFYVHFSLLNRSGPGDSFMSSEFQASLKGNSITNGVPRDVAYGSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGY 352 (723)
T ss_pred HHHHHHHHHHhhcCCCCccccCHHHHHHhCCCCCCCCCcceeeeccEEEEEecCCcceeeecccccCCCCcCccceEEee
Confidence 678999999999999999999999 992 234 89999999999999876 79999999999999 999999999
Q ss_pred cCCCCCCCcEEEEEc-CCCC---CCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCC-ceEEEEecCCC-CCCCCCcEE
Q 027975 73 PDVDDANSYWIVKPI-LGAS---AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISG-NLEISCFGGEE-ESDTGDYWR 146 (216)
Q Consensus 73 ~~~~d~n~~W~I~~~-~~~~---~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~-~~EVs~~~~~~-~~d~~~~W~ 146 (216)
++ +|.||.|.|++. ...+ ..+.++|+.||.|||+|+.|+|+||+|++++|+++ ++||||+++.+ .+|++|+|+
T Consensus 353 ~~-~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~ 431 (723)
T KOG3359|consen 353 PH-KDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWR 431 (723)
T ss_pred cc-cCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEE
Confidence 99 999999999942 1111 23467899999999999999999999999999997 79999999765 899999999
Q ss_pred EEEecCC-----c-eeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeCC-CCCCcEEEeeeecC
Q 027975 147 VMIEGSG-----K-TWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK-RADNVWLAAEGVYL 210 (216)
Q Consensus 147 IE~~~~~-----~-~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~~-~~~~~W~i~~~~~~ 210 (216)
||+.++. . +.+..+.|||+|+.|||||.+|+.+||+||++|+||+|.+++ ++++.|+|||+++.
T Consensus 432 veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~LP~WGf~Q~EV~c~~~~~~~~T~WnVEe~~n~ 502 (723)
T KOG3359|consen 432 VEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKLPEWGFEQQEVVCAKNPRDKSTTWNVEEHENP 502 (723)
T ss_pred EEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcCCcccccceEEecccCCcCCCceEEEecccCC
Confidence 9998753 2 456899999999999999999999999999999999999886 58999999999964
No 2
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-49 Score=370.27 Aligned_cols=206 Identities=31% Similarity=0.430 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCch-hh------ccCCCCeeeeC-CEEEEEeCCC-CCCeeeecccCCCCCCccEEEeec
Q 027975 3 MVFFALAVFLFLGLNLDESSPSSA-SA------ASSETVEITYG-TVLKLMHEKT-KFRLHSHEVPYGSGSGQQSVTGFP 73 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~s~~-q~------~~~~~~~V~~G-d~I~L~h~~T-~~~LhSh~~~y~~~s~~q~Vt~~~ 73 (216)
+..|++||-+|++|||||++||+. |+ ....+..+.+| |+|+|||..| |+|||||.+.||.||+|||||+|+
T Consensus 261 l~~F~vhf~~l~~sg~~d~~mps~fq~~L~g~~v~~~~~~~~~g~S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt~y~ 340 (699)
T COG1928 261 LLSFYVHFNILTDSGPGDSFMPSLFQATLKGNPVYLNSRDPAYGSSTITIRHAGTGGGYLHSHNQLYPEGSEQQQVTGYG 340 (699)
T ss_pred HHHHhheeeeeccCCCcccccCHHHHhhccCCcccccceeeeeeeeEEEEeccCCccchhhcccCCCCCCcccceeeccc
Confidence 456789999999999999999999 99 45666788899 9999999998 599999999999999999999999
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCC-ceEEEEecCCCCCCCCCcEEEEEecC
Q 027975 74 DVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISG-NLEISCFGGEEESDTGDYWRVMIEGS 152 (216)
Q Consensus 74 ~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~-~~EVs~~~~~~~~d~~~~W~IE~~~~ 152 (216)
+ .|+||.|.|+..+ .+..+-.+|++|+.|||+|..|+++||+|++++|+++ |.||||++....+|++|.|+||+.++
T Consensus 341 ~-~d~NN~W~~e~~~-~~~~~~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~ 418 (699)
T COG1928 341 H-KDANNEWLIELSD-ENATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKD 418 (699)
T ss_pred c-cccccceeeeecc-cccccceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeec
Confidence 9 9999999999655 3334567899999999999999999999999999997 89999999778899999999999864
Q ss_pred ------CceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeCCCCCCcEEEeeeecC
Q 027975 153 ------GKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 210 (216)
Q Consensus 153 ------~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~~~~~~~W~i~~~~~~ 210 (216)
..+.+..++|||+|..|||||.+|+.+||+||+.|+||+|.++.++++.|+||+++..
T Consensus 419 ~~~~~~~~i~pl~t~fRl~h~~~~cyL~s~~~~lP~Wgf~q~EV~c~~~~~~~T~W~ie~~~n~ 482 (699)
T COG1928 419 EANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEWGFSQREVLCAKDRDPSTTWNIEENVND 482 (699)
T ss_pred cCCCccceeeecccceeeeecccceeeccCCCCCCCcccccceeEeeeccCCcceeeeecccCc
Confidence 2356789999999999999999999999999999999999988788999999999975
No 3
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=100.00 E-value=1.6e-45 Score=289.79 Aligned_cols=177 Identities=55% Similarity=0.964 Sum_probs=170.4
Q ss_pred eeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCe
Q 027975 35 EITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKW 114 (216)
Q Consensus 35 ~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~ 114 (216)
.|+||+.|+|.|.+++..||||+++|.+||+||.||+++...|.|.+|+|.+.....|+.+++|+||+.|||.|+.|+++
T Consensus 25 ~VTcgSvlKlln~~~~~RLHSHDVkYGSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~Tgkn 104 (211)
T KOG3358|consen 25 VVTCGSVLKLLNTKHKFRLHSHDVKYGSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKN 104 (211)
T ss_pred eEEhhhhHHhhccccceeeeccccCccCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeecccc
Confidence 89999999999999999999999999999999999999987899999999999988899999999999999999999999
Q ss_pred EEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEe
Q 027975 115 LHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVR 194 (216)
Q Consensus 115 L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~ 194 (216)
||||-..+|++++|||+|+++.+.+|..|.|.|.+. |+.|..+..|||+|+.|+.||+.++.++..|+.+|+||.+..
T Consensus 105 LHSHhf~sPlSgnqEVSafG~dgegDtgD~Wtvic~--g~~W~r~~~vrl~Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~ 182 (211)
T KOG3358|consen 105 LHSHHFTSPLSGNQEVSAFGEDGEGDTGDHWTVICN--GKTWKRDARVRLQHIDTSVYLSVSGEQYGRPISGQQEVVGMR 182 (211)
T ss_pred hhhcccCCCCCCCeeEEeecccCCCCcccceEEEeC--CccccccceEEEEEeccceeEEecccccCCccCCceEEeccc
Confidence 999999999999999999998888999999997664 678999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEeeeecCCCC
Q 027975 195 EKRADNVWLAAEGVYLPVT 213 (216)
Q Consensus 195 ~~~~~~~W~i~~~~~~~~~ 213 (216)
++..++.|.+.||+|+++.
T Consensus 183 ~~~~~n~WkaaEGifikp~ 201 (211)
T KOG3358|consen 183 SPKAGNIWKAAEGIFIKPS 201 (211)
T ss_pred CCCCCCceeeccceEecCc
Confidence 9999999999999999986
No 4
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=100.00 E-value=3e-34 Score=234.87 Aligned_cols=155 Identities=38% Similarity=0.580 Sum_probs=126.7
Q ss_pred CCeeeecccCCCCCCccEEEeecCCCCCCCc-------------------EEEEEcCCCCCCCCCeeeeCCEEEEEeCCC
Q 027975 51 FRLHSHEVPYGSGSGQQSVTGFPDVDDANSY-------------------WIVKPILGASAKQGDTIKSGTIIRLQHMRT 111 (216)
Q Consensus 51 ~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~-------------------W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T 111 (216)
+|||||++.||.+|.||+||||++ .|.||. |+||++.... ..+..|+.||.|||+|..|
T Consensus 1 g~Lhshd~~y~~~s~qqqvt~~~~-~d~nn~~~~~~~~~~~~~~~~~~slW~IE~~~~~~-~~g~~v~~g~~iRL~H~~T 78 (190)
T PF02815_consen 1 GYLHSHDVIYPFHSEQQQVTTYPH-NDDNNEFRRTVNRESGAVATSANSLWQIEPVSEDP-WSGGPVKWGDVIRLRHLST 78 (190)
T ss_dssp TCEECCEEEEEEETTTCEEEEEEE-SSTGCCEEEBEESSSGGGGGSGGGEEEEEE-TSST-TTTSB-BTTSEEEEEETTT
T ss_pred CeeEEEeeCCCCCCCcceEEEECc-cCCCccccceeeeeccccccccccceEEecCCCCc-ccCCcccCCCEEEEEEccC
Confidence 699999999999999999999998 788888 9999865433 2578899999999999999
Q ss_pred CCeEEecCCCCCCCC----ceEEEEecCCC-CCCCCCc--EEEEEec-----CCceeccCCcEEEEEccCCceeccCCCC
Q 027975 112 RKWLHSHLHASPISG----NLEISCFGGEE-ESDTGDY--WRVMIEG-----SGKTWRQDQRIRLQHVDTGGYLHSHPKK 179 (216)
Q Consensus 112 ~~~L~sh~~~~p~s~----~~EVs~~~~~~-~~d~~~~--W~IE~~~-----~~~~~~~~s~frL~H~~t~~yL~s~~~~ 179 (216)
++||++|+.++|++. ++||+|++... .+|.++. -.++... .+.++..++.|||+|+.|||||+++...
T Consensus 79 g~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 79 GKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp S-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 999999999999974 69999998432 3565664 2223222 2356778999999999999999999999
Q ss_pred CCCCCCCCeeEEEEeCCCCCCcEEEeeeec
Q 027975 180 YQRIAGGQQEVCGVREKRADNVWLAAEGVY 209 (216)
Q Consensus 180 lp~~~~~q~EV~c~~~~~~~~~W~i~~~~~ 209 (216)
+|+||++|+||+|.++ ..++|+||+...
T Consensus 159 lp~wg~~q~Ev~~~~~--~~~~w~~e~~~~ 186 (190)
T PF02815_consen 159 LPEWGFGQQEVACMKK--SGTMWNVEDNEN 186 (190)
T ss_dssp S-TTTTTSCEEEEEEE--EEEESSGGSST-
T ss_pred cccccccccEEeeecC--CCceeeEecccc
Confidence 9999999999999986 899999998765
No 5
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=195.75 Aligned_cols=122 Identities=27% Similarity=0.387 Sum_probs=110.3
Q ss_pred cCCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecC---CCCCCCcEEEEEcCCCCCCCCCeeee-CCEEE
Q 027975 30 SSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPD---VDDANSYWIVKPILGASAKQGDTIKS-GTIIR 105 (216)
Q Consensus 30 ~~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~---~~d~n~~W~I~~~~~~~~~~~~~v~~-gd~Ir 105 (216)
..+.++|+.||.|||+|+.||++||||+++.|.+.+++|||||+. .+|.||+|+||+.++....+++.|+. .+.||
T Consensus 375 ~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fR 454 (723)
T KOG3359|consen 375 ATQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFR 454 (723)
T ss_pred CCcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEE
Confidence 445788999999999999999999999999999888999999986 47999999999998875567888987 88999
Q ss_pred EEeCCCCCeEEecCCCCCCCC--ceEEEEecCCCCCCCCCcEEEEEecCC
Q 027975 106 LQHMRTRKWLHSHLHASPISG--NLEISCFGGEEESDTGDYWRVMIEGSG 153 (216)
Q Consensus 106 L~H~~T~~~L~sh~~~~p~s~--~~EVs~~~~~~~~d~~~~W~IE~~~~~ 153 (216)
|+|+.|+|||.+|+.++|.|| ||||+|..+ ..+.++.|.||.+.+.
T Consensus 455 l~h~~t~c~L~ss~~~LP~WGf~Q~EV~c~~~--~~~~~T~WnVEe~~n~ 502 (723)
T KOG3359|consen 455 LIHVLTGCYLKSSGKKLPEWGFEQQEVVCAKN--PRDKSTTWNVEEHENP 502 (723)
T ss_pred EEEcccceEEccCCCcCCcccccceEEecccC--CcCCCceEEEecccCC
Confidence 999999999999999999998 999999975 5689999999987653
No 6
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.6e-21 Score=178.08 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=125.1
Q ss_pred CCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecC--CCCCCCcEEEEEcCCCCCCCCCeeee-CCEEEEEe
Q 027975 32 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPD--VDDANSYWIVKPILGASAKQGDTIKS-GTIIRLQH 108 (216)
Q Consensus 32 ~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~--~~d~n~~W~I~~~~~~~~~~~~~v~~-gd~IrL~H 108 (216)
+..+|+.|+.|||+|+.||++||+|+.+.|.+.+|-|||||+. .+|.++.|+|++..+...++...|+. .+.+||+|
T Consensus 359 ~~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h 438 (699)
T COG1928 359 QIEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYH 438 (699)
T ss_pred cceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeee
Confidence 4678999999999999999999999999998777899999987 58999999999998876667788987 78999999
Q ss_pred CCCCCeEEecCCCCCCCC--ceEEEEecCCCCCCCCCcEEEEEecCCc------eeccCCcEEEEEccCCceeccCCCCC
Q 027975 109 MRTRKWLHSHLHASPISG--NLEISCFGGEEESDTGDYWRVMIEGSGK------TWRQDQRIRLQHVDTGGYLHSHPKKY 180 (216)
Q Consensus 109 ~~T~~~L~sh~~~~p~s~--~~EVs~~~~~~~~d~~~~W~IE~~~~~~------~~~~~s~frL~H~~t~~yL~s~~~~l 180 (216)
+.|+|||.+|+.++|.|| |+||.|..+ .|+.+.|.||.+.+.+ ..-.+..|.-+-+++++.|..+++.|
T Consensus 439 ~~~~cyL~s~~~~lP~Wgf~q~EV~c~~~---~~~~T~W~ie~~~n~~l~~~~~~~~~k~~F~~~fie~n~~M~~~nn~l 515 (699)
T COG1928 439 VLTGCYLASHDLKLPEWGFSQREVLCAKD---RDPSTTWNIEENVNDRLPNPEKKVYKKLSFWKKFIELNKAMFSSNNAL 515 (699)
T ss_pred cccceeeccCCCCCCCcccccceeEeeec---cCCcceeeeecccCccCCcccccccCCchHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999997 999999975 7899999999876542 12234556666677888888887776
No 7
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=99.82 E-value=7e-20 Score=144.86 Aligned_cols=107 Identities=30% Similarity=0.447 Sum_probs=94.0
Q ss_pred cCCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecC--CCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEE
Q 027975 30 SSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPD--VDDANSYWIVKPILGASAKQGDTIKSGTIIRLQ 107 (216)
Q Consensus 30 ~~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~--~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~ 107 (216)
-+.+++|++|++|||.|+.||.+||||-++.|.+ +.|||+||+. .+|..|.|+|.+.. +.++....|||+
T Consensus 82 c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPlS-gnqEVSafG~dgegDtgD~Wtvic~g-------~~W~r~~~vrl~ 153 (211)
T KOG3358|consen 82 CERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPLS-GNQEVSAFGEDGEGDTGDHWTVICNG-------KTWKRDARVRLQ 153 (211)
T ss_pred ccCCCccccCCeEEEEEeecccchhhcccCCCCC-CCeeEEeecccCCCCcccceEEEeCC-------ccccccceEEEE
Confidence 5668899999999999999999999999999985 8999999997 57899999999874 457777899999
Q ss_pred eCCCCCeEEecCCC--CCCCCceEEEEecCCCCCCCCCcEEE
Q 027975 108 HMRTRKWLHSHLHA--SPISGNLEISCFGGEEESDTGDYWRV 147 (216)
Q Consensus 108 H~~T~~~L~sh~~~--~p~s~~~EVs~~~~~~~~d~~~~W~I 147 (216)
|+.|+.||++++.+ .|++||+||.+... ...++.|..
T Consensus 154 Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~~---~~~~n~Wka 192 (211)
T KOG3358|consen 154 HIDTSVYLSVSGEQYGRPISGQQEVVGMRS---PKAGNIWKA 192 (211)
T ss_pred EeccceeEEecccccCCccCCceEEecccC---CCCCCceee
Confidence 99999999999865 59999999999874 357788975
No 8
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=99.72 E-value=4.4e-18 Score=139.24 Aligned_cols=112 Identities=33% Similarity=0.468 Sum_probs=82.7
Q ss_pred CCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCC---ccEEEeecC---CCCCCCc--EEEEEcCCCCCCCCCeeee-CC
Q 027975 32 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSG---QQSVTGFPD---VDDANSY--WIVKPILGASAKQGDTIKS-GT 102 (216)
Q Consensus 32 ~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~---~q~Vt~~~~---~~d~n~~--W~I~~~~~~~~~~~~~v~~-gd 102 (216)
.+..|+.|+.|||+|+.||+|||+|..+.|.+.. +++|+||.. .+|.++. -+++...... .....++. .+
T Consensus 61 ~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~-~~~~~~~~~~s 139 (190)
T PF02815_consen 61 SGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTG-MGEDEIKTLDS 139 (190)
T ss_dssp TTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSS-CSSSSBBBTTS
T ss_pred cCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCC-ccCCcEEeccc
Confidence 4778999999999999999999999999887655 899999875 2444554 2222222211 12345665 67
Q ss_pred EEEEEeCCCCCeEEecCCCCCCCC--ceEEEEecCCCCCCCCCcEEEEE
Q 027975 103 IIRLQHMRTRKWLHSHLHASPISG--NLEISCFGGEEESDTGDYWRVMI 149 (216)
Q Consensus 103 ~IrL~H~~T~~~L~sh~~~~p~s~--~~EVs~~~~~~~~d~~~~W~IE~ 149 (216)
.|||+|+.|+|+|++|..++|.|| |+||+|... ....|.||.
T Consensus 140 ~frL~H~~t~~~L~~~~~~lp~wg~~q~Ev~~~~~-----~~~~w~~e~ 183 (190)
T PF02815_consen 140 YFRLRHVATGCWLHSHDVKLPEWGFGQQEVACMKK-----SGTMWNVED 183 (190)
T ss_dssp EEEEEETTTTEEEEEEEEES-TTTTTSCEEEEEEE-----EEEESSGGS
T ss_pred EEEEEECCcCEEEecCCcccccccccccEEeeecC-----CCceeeEec
Confidence 999999999999999999999997 899999862 567787654
No 9
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.58 E-value=4e-15 Score=98.58 Aligned_cols=53 Identities=42% Similarity=0.660 Sum_probs=47.8
Q ss_pred CeeeeCCEEEEEeCCCCCCeeeeccc-CCCCCCccEEEeecCCC-CCCCcEEEEE
Q 027975 34 VEITYGTVLKLMHEKTKFRLHSHEVP-YGSGSGQQSVTGFPDVD-DANSYWIVKP 86 (216)
Q Consensus 34 ~~V~~Gd~I~L~h~~T~~~LhSh~~~-y~~~s~~q~Vt~~~~~~-d~n~~W~I~~ 86 (216)
..|++||+|||+|+.||+|||||..+ ++.+++||+|+|+.... |.+++|+|++
T Consensus 2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 2 GFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred CccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 56999999999999999999999998 66688999999998843 8899999986
No 10
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.47 E-value=1.1e-13 Score=91.53 Aligned_cols=53 Identities=42% Similarity=0.629 Sum_probs=48.1
Q ss_pred ceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeCC--CCCCcEEEee
Q 027975 154 KTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK--RADNVWLAAE 206 (216)
Q Consensus 154 ~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~~--~~~~~W~i~~ 206 (216)
.+++.++.|||+|+.|||||+++..++|.|+.+|+||+|...+ +.+++|.|+.
T Consensus 2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 2 GFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred CccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 4578899999999999999999999889999999999999876 6789999985
No 11
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=99.04 E-value=1.8e-09 Score=90.16 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=79.2
Q ss_pred CCeeeeCCEEEEEeCCCCCCeeeeccc-CCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCC
Q 027975 33 TVEITYGTVLKLMHEKTKFRLHSHEVP-YGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRT 111 (216)
Q Consensus 33 ~~~V~~Gd~I~L~h~~T~~~LhSh~~~-y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T 111 (216)
+..|.||+.|+|+|+.|+.||...... .........|.+-....+++.+|+|.|.... ...+++|+.||.|.|.++.+
T Consensus 95 g~~v~YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k~-r~~Gd~V~~gD~i~l~~~~~ 173 (214)
T PF08709_consen 95 GTPVLYGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYKQ-RSEGDPVRYGDQIILISVST 173 (214)
T ss_dssp T-B-BTTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESSTT-S-TTSB-BTT-EEEEEETTT
T ss_pred CCEEEecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchhe-EcCCCeeeeCCEEEEEECCC
Confidence 677999999999999999999887655 3333456788888873337899999997653 34689999999999999999
Q ss_pred CCeEEecC-CC-CCCCCceEEEEecCCCCCCCCCcEEEEEec
Q 027975 112 RKWLHSHL-HA-SPISGNLEISCFGGEEESDTGDYWRVMIEG 151 (216)
Q Consensus 112 ~~~L~sh~-~~-~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~ 151 (216)
+.|||... .. ....+..||.|. ...+.|+|....
T Consensus 174 ~~~Lh~s~~~~~~~~~~~~eVn~~------~~~T~w~i~~~~ 209 (214)
T PF08709_consen 174 EQYLHVSSNKSLSDNKGCKEVNAS------FQQTSWKINPFM 209 (214)
T ss_dssp -SEEEEEEEEEESSSSSCEEEEES------SS--EEEEEEEE
T ss_pred CCcccccCccccccCCCceEEEEE------ccccceEEEEEe
Confidence 99999432 22 222346999984 457889997653
No 12
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=99.03 E-value=4.7e-10 Score=110.19 Aligned_cols=142 Identities=19% Similarity=0.311 Sum_probs=107.0
Q ss_pred ccCCCCeeeeCCEEEEEeCCCC-CCee-eecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEE
Q 027975 29 ASSETVEITYGTVLKLMHEKTK-FRLH-SHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRL 106 (216)
Q Consensus 29 ~~~~~~~V~~Gd~I~L~h~~T~-~~Lh-Sh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL 106 (216)
.++.++.|..||+|.|.-++.| +.|| ...+..+...+..+|.|. +.|..|.|.........+...+|.||+|||
T Consensus 174 lrsiGDnVvvGdKv~L~Pvna~~Q~lHvas~~eL~DnpgckEVN~~----N~nTsWki~lFm~~~en~e~~lKgGDVVRL 249 (2706)
T KOG3533|consen 174 LRSIGDNVVVGDKVSLIPVNAGTQPLHVASSFELLDNPGCKEVNCL----NCNTSWKIFLFMLFDENQENSLKGGDVVRL 249 (2706)
T ss_pred hhccCCceEEcceEEEcccCCCCccchhhhccccCCCCCccccccc----CCCCcceeeeeeeeccchhhhhccCcEEEe
Confidence 3778899999999999999887 8999 455555554456677665 457899999887665556778999999999
Q ss_pred EeCCCCCeEEecCCCCCCCCceEEEEecC----C-CCCCCCCcEEEEEec----CCceeccCCcEEEEEccCCceeccCC
Q 027975 107 QHMRTRKWLHSHLHASPISGNLEISCFGG----E-EESDTGDYWRVMIEG----SGKTWRQDQRIRLQHVDTGGYLHSHP 177 (216)
Q Consensus 107 ~H~~T~~~L~sh~~~~p~s~~~EVs~~~~----~-~~~d~~~~W~IE~~~----~~~~~~~~s~frL~H~~t~~yL~s~~ 177 (216)
+|.+..+||....++- ++-|--... + .......+|.||+.. .|..-.+++.+|++|+.||-||++..
T Consensus 250 FHAeQekFLT~Dey~k----q~hVFLRtT~RqSAtsATSSkALWEveVVqhd~cRGGag~WNslyRFKHLATg~YLaAE~ 325 (2706)
T KOG3533|consen 250 FHAEQEKFLTCDEYPK----QNHVFLRTTNRQSATSATSSKALWEVEVVQHDPCRGGAGKWNSLYRFKHLATGMYLAAEP 325 (2706)
T ss_pred ecccccceeehhcccc----cceEEEeccCCcccccccccccceeEEEEecCCCCCcccchhhhhhhhhhcccceeecCC
Confidence 9999999999876542 222211110 0 123577899999975 35566899999999999999999864
Q ss_pred C
Q 027975 178 K 178 (216)
Q Consensus 178 ~ 178 (216)
.
T Consensus 326 ~ 326 (2706)
T KOG3533|consen 326 S 326 (2706)
T ss_pred C
Confidence 3
No 13
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=98.88 E-value=4.4e-09 Score=103.57 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=124.0
Q ss_pred CCeeeeCCEEEEEeCCCCCCeeeecccCCC-CCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCC
Q 027975 33 TVEITYGTVLKLMHEKTKFRLHSHEVPYGS-GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRT 111 (216)
Q Consensus 33 ~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~-~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T 111 (216)
+..|.||+.|+|.|++++.||.....-... ......|+.... +++++|+.|+|.-+-. ..++.|-.||+|.|.-+..
T Consensus 117 G~viqYgsvvQLLH~KSNKYlTVnKrlPallEkNAMrV~LDaa-GNEGSWfyI~PfyKlr-siGDnVvvGdKv~L~Pvna 194 (2706)
T KOG3533|consen 117 GNVIQYGSVVQLLHVKSNKYLTVNKRLPALLEKNAMRVYLDAA-GNEGSWFYIEPFYKLR-SIGDNVVVGDKVSLIPVNA 194 (2706)
T ss_pred hhHhhhhhHHhhhhhccCceEEEeccChhhHhhcceEEEeecc-CCccceEEeehhHHhh-ccCCceEEcceEEEcccCC
Confidence 456999999999999999999997643222 345678888776 8999999999886432 3688999999999998887
Q ss_pred C-CeEE-ecCCCCCCC-CceEEEEecCCCCCCCCCcEEEEEec-----CCceeccCCcEEEEEccCCceeccCCCCCCCC
Q 027975 112 R-KWLH-SHLHASPIS-GNLEISCFGGEEESDTGDYWRVMIEG-----SGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRI 183 (216)
Q Consensus 112 ~-~~L~-sh~~~~p~s-~~~EVs~~~~~~~~d~~~~W~IE~~~-----~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~ 183 (216)
+ ..|| .+.+.++.. |..||.|.. .++.|+|-.-- ...+++.++.+||+|.+..+||++...
T Consensus 195 ~~Q~lHvas~~eL~DnpgckEVN~~N------~nTsWki~lFm~~~en~e~~lKgGDVVRLFHAeQekFLT~Dey----- 263 (2706)
T KOG3533|consen 195 GTQPLHVASSFELLDNPGCKEVNCLN------CNTSWKIFLFMLFDENQENSLKGGDVVRLFHAEQEKFLTCDEY----- 263 (2706)
T ss_pred CCccchhhhccccCCCCCcccccccC------CCCcceeeeeeeeccchhhhhccCcEEEeecccccceeehhcc-----
Confidence 7 8888 555666655 589999973 67789985422 235788999999999999999999763
Q ss_pred CCCCeeEEEE--------eCCCCCCcEEEeeeecCC
Q 027975 184 AGGQQEVCGV--------REKRADNVWLAAEGVYLP 211 (216)
Q Consensus 184 ~~~q~EV~c~--------~~~~~~~~W~i~~~~~~~ 211 (216)
.+|+-|.-- ...+..++|.||--.+.|
T Consensus 264 -~kq~hVFLRtT~RqSAtsATSSkALWEveVVqhd~ 298 (2706)
T KOG3533|consen 264 -PKQNHVFLRTTNRQSATSATSSKALWEVEVVQHDP 298 (2706)
T ss_pred -cccceEEEeccCCcccccccccccceeEEEEecCC
Confidence 244555321 112467899998766544
No 14
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=98.70 E-value=1.3e-08 Score=100.33 Aligned_cols=135 Identities=26% Similarity=0.330 Sum_probs=97.5
Q ss_pred ccCCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEe
Q 027975 29 ASSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQH 108 (216)
Q Consensus 29 ~~~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H 108 (216)
++++++.|+.||.+.|..+.+.+|||-. |.+ +.-.|.+.. ...+|.|.+.-..+.....++-.||++||.|
T Consensus 169 qrsegekvrigddlilvsvsserylhls---~~n--g~i~vdaaf----~qtlw~v~p~~sgs~~~egyligg~v~rl~h 239 (5019)
T KOG2243|consen 169 QRSEGEKVRIGDDLILVSVSSERYLHLS---VGN--GNIHVDAAF----MQTLWNVAPICSGSEAAEGYLIGGDVLRLFH 239 (5019)
T ss_pred ccccCceeeecCceEEEEecccceEEEE---ecC--CceeecHHH----HHHHhccCCCcCCchhhhceeecchHHHHhc
Confidence 5888999999999999999999999974 333 344553322 2478999987655545567888899999999
Q ss_pred CCCCCeEEecCCCCCCCC----ceEEEEecCCCCCCCCCcEEEEEec---CCceeccCCcEEEEEccCCceeccC
Q 027975 109 MRTRKWLHSHLHASPISG----NLEISCFGGEEESDTGDYWRVMIEG---SGKTWRQDQRIRLQHVDTGGYLHSH 176 (216)
Q Consensus 109 ~~T~~~L~sh~~~~p~s~----~~EVs~~~~~~~~d~~~~W~IE~~~---~~~~~~~~s~frL~H~~t~~yL~s~ 176 (216)
......|......-.... ..|-.+.+ ..+.++|++|... .|.-+++++.|||+|+.||.||.-.
T Consensus 240 ghmdecltips~d~~d~q~r~i~ye~g~~~----~~a~slwr~e~lriawsgs~irwgq~frlrh~ttg~ylal~ 310 (5019)
T KOG2243|consen 240 GHMDECLTIPSGDHGDEQHRRIFYEAGAAG----THARSLWRLEPLRIAWSGSHIRWGQAFRLRHLTTGHYLALM 310 (5019)
T ss_pred cCccceeecCCCCccchhheeeeeeccccc----cchhhhhcccceeEEeccCccccCcceeeeeccccceeeee
Confidence 988877754211111111 22333322 3578999999865 5777899999999999999999743
No 15
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=98.39 E-value=1.3e-06 Score=72.85 Aligned_cols=163 Identities=22% Similarity=0.292 Sum_probs=100.6
Q ss_pred CCeeeeCCEEEEEeCCC-CCCeeeecccCCCCCCccEEEeecCCC--------CCCCcEEEEEcCCC-----------CC
Q 027975 33 TVEITYGTVLKLMHEKT-KFRLHSHEVPYGSGSGQQSVTGFPDVD--------DANSYWIVKPILGA-----------SA 92 (216)
Q Consensus 33 ~~~V~~Gd~I~L~h~~T-~~~LhSh~~~y~~~s~~q~Vt~~~~~~--------d~n~~W~I~~~~~~-----------~~ 92 (216)
..++++||.|.|.-..+ ++||.+- |.....+..-.... =..-+|.|.+.... ..
T Consensus 3 ~~~L~~Gd~V~L~~~~~~~~~l~a~------Gf~~~~~~l~~~~~~~~~~p~~f~~clF~I~p~~~~~a~~~~~~~~~~~ 76 (214)
T PF08709_consen 3 VQPLRYGDIVSLSCEDQDNGFLSAE------GFGNRKCFLEPFSGDKNNPPKDFRDCLFQICPALSYRAQQELLKEQQRK 76 (214)
T ss_dssp --B-BTT-EEEEEEESSSCEEEEES------CSSC-BEEEEECCTTSSS-STTGGGGEEEEEEEEEHHHHHHHHHCCH--
T ss_pred ccccccCcEEEEEEeCCCCeEEEEe------cccCCcEEEEECCCcccCCccchheeEEEEcCCccHHHHHHHHHhhhhc
Confidence 35799999999999876 5788763 22233343332211 11345788775210 00
Q ss_pred C----------------CCCeeeeCCEEEEEeCCCCCeEEecCCC-CCCC-CceEEEEecCCCCCCCCCcEEEEEec---
Q 027975 93 K----------------QGDTIKSGTIIRLQHMRTRKWLHSHLHA-SPIS-GNLEISCFGGEEESDTGDYWRVMIEG--- 151 (216)
Q Consensus 93 ~----------------~~~~v~~gd~IrL~H~~T~~~L~sh~~~-~p~s-~~~EVs~~~~~~~~d~~~~W~IE~~~--- 151 (216)
. .+.+|.+|+.|.|.|+.+++||...... +-.. .+..|.-... ..+.+++|+|...-
T Consensus 77 ~~~~~~~~~~a~~~~~~~g~~v~YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~--~~~e~s~F~i~P~~k~r 154 (214)
T PF08709_consen 77 QQQEKLSDQAAQIEKEQNGTPVLYGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEF--SSGENSWFRIHPAYKQR 154 (214)
T ss_dssp -----HHHHHHHHHHHHHT-B-BTTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESS--SSSGGGEEEEEESSTTS
T ss_pred ccccchhhhhhhhhcccCCCEEEecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccC--CCcccEEEEEEcchheE
Confidence 0 1456999999999999999999987654 2222 3778877653 12256899998754
Q ss_pred -CCceeccCCcEEEEEccCCceeccC-CCCCCCCCCCCeeEEEEeCCCCCCcEEEeee
Q 027975 152 -SGKTWRQDQRIRLQHVDTGGYLHSH-PKKYQRIAGGQQEVCGVREKRADNVWLAAEG 207 (216)
Q Consensus 152 -~~~~~~~~s~frL~H~~t~~yL~s~-~~~lp~~~~~q~EV~c~~~~~~~~~W~i~~~ 207 (216)
.|+.+..++.|.|..+.++.||+.+ ...+.+ ..+..||.|. ...+.|.|.-.
T Consensus 155 ~~Gd~V~~gD~i~l~~~~~~~~Lh~s~~~~~~~-~~~~~eVn~~---~~~T~w~i~~~ 208 (214)
T PF08709_consen 155 SEGDPVRYGDQIILISVSTEQYLHVSSNKSLSD-NKGCKEVNAS---FQQTSWKINPF 208 (214)
T ss_dssp -TTSB-BTT-EEEEEETTT-SEEEEEEEEEESS-SSSCEEEEES---SS--EEEEEEE
T ss_pred cCCCeeeeCCEEEEEECCCCCcccccCcccccc-CCCceEEEEE---ccccceEEEEE
Confidence 4788999999999999999999943 323322 2344899985 56899999643
No 16
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=98.08 E-value=0.00024 Score=55.53 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=83.6
Q ss_pred eeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEE
Q 027975 37 TYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLH 116 (216)
Q Consensus 37 ~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~ 116 (216)
..|-.|+|++ ..+.|||.-+ ...-|+.......-|..|.|+++.+. .+.|+|+ ..-|+||.
T Consensus 5 ~d~~~VRLRS-~~~kYL~ADe-------Dg~~Vs~~~~~~s~na~W~Ve~v~~~----------~~~v~L~-saYGrYL~ 65 (142)
T PF04601_consen 5 PDGKHVRLRS-HHGKYLHADE-------DGEGVSQDRRGASLNAAWTVERVPGS----------PNYVRLR-SAYGRYLA 65 (142)
T ss_pred CCCCEEEEEe-cCCCEEEEcC-------CCCeEEECCCCCCCcceEEEEEecCC----------CCEEEEe-eccCceEe
Confidence 4678999999 8899999853 23456555554567889999988542 2578887 47899999
Q ss_pred ecCCCCCCCC-ceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEe
Q 027975 117 SHLHASPISG-NLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVR 194 (216)
Q Consensus 117 sh~~~~p~s~-~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~ 194 (216)
.++...|+.- ...|.-... ..-|..-.|+. + +.+..++|+|. .|+||.+++. +|.|-.. |+...
T Consensus 66 as~~~~~lG~~G~~v~Q~~~-~~~d~~~~Wep--v------r~g~~V~Lr~~-~gr~LRANG~-~~~Wrn~---VT~D~ 130 (142)
T PF04601_consen 66 ASDEPALLGHTGRRVVQTDP-DRLDSSVEWEP--V------RDGFYVKLRHR-SGRYLRANGG-YPPWRNS---VTVDV 130 (142)
T ss_pred ccCCcCCCCCCCCEEEecCC-ccCCCCceEEE--e------cCCCEEEEEec-CCceEEcCCC-CCCCcce---EEecC
Confidence 9988777642 222322221 12355567853 2 34567899885 5899999986 5667443 55543
No 17
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=96.14 E-value=0.11 Score=40.59 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=57.6
Q ss_pred eeCCEEEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCC
Q 027975 99 KSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 178 (216)
Q Consensus 99 ~~gd~IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~ 178 (216)
..+..|||+. ..++||+..+-.. -|+--.. ....+..|.||....+ ...++|+ ..-|+||+.++.
T Consensus 5 ~d~~~VRLRS-~~~kYL~ADeDg~------~Vs~~~~--~~s~na~W~Ve~v~~~-----~~~v~L~-saYGrYL~as~~ 69 (142)
T PF04601_consen 5 PDGKHVRLRS-HHGKYLHADEDGE------GVSQDRR--GASLNAAWTVERVPGS-----PNYVRLR-SAYGRYLAASDE 69 (142)
T ss_pred CCCCEEEEEe-cCCCEEEEcCCCC------eEEECCC--CCCCcceEEEEEecCC-----CCEEEEe-eccCceEeccCC
Confidence 4578999999 8999999875432 2333222 2357889999987542 2456665 689999999887
Q ss_pred CCCCCCCCCeeEEEEe-C-CCCCCcEEE
Q 027975 179 KYQRIAGGQQEVCGVR-E-KRADNVWLA 204 (216)
Q Consensus 179 ~lp~~~~~q~EV~c~~-~-~~~~~~W~i 204 (216)
.+| +|..-..|.-.. . .+.+..|..
T Consensus 70 ~~~-lG~~G~~v~Q~~~~~~d~~~~Wep 96 (142)
T PF04601_consen 70 PAL-LGHTGRRVVQTDPDRLDSSVEWEP 96 (142)
T ss_pred cCC-CCCCCCEEEecCCccCCCCceEEE
Confidence 665 333323343222 1 345668865
No 18
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.81 E-value=0.0095 Score=60.59 Aligned_cols=164 Identities=16% Similarity=0.234 Sum_probs=103.2
Q ss_pred cCCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCC-ccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEe
Q 027975 30 SSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSG-QQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQH 108 (216)
Q Consensus 30 ~~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~-~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H 108 (216)
....+.+-||-.|-|||..+|-||---...-....+ .-.|..-.+..-+.-+|+|.+..++. ..++.||.||-+.|..
T Consensus 108 ggghrtllyghaillrhs~sgmyl~clstsrs~tdklafdvgl~e~~tgeacwwtihpaskqr-segekvrigddlilvs 186 (5019)
T KOG2243|consen 108 GGGHRTLLYGHAILLRHSFSGMYLCCLSTSRSQTDKLAFDVGLQEDATGEACWWTIHPASKQR-SEGEKVRIGDDLILVS 186 (5019)
T ss_pred CCCceeeehhhhhhhhccccceEEEEecccccccccceeeccccccCcCceeeEEeccccccc-ccCceeeecCceEEEE
Confidence 344567889999999999999998632211111000 11222222222344589999886543 3688999999999999
Q ss_pred CCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCc-----eeccCCcEEEEEccCCceeccCCCCCCCC
Q 027975 109 MRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGK-----TWRQDQRIRLQHVDTGGYLHSHPKKYQRI 183 (216)
Q Consensus 109 ~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~-----~~~~~s~frL~H~~t~~yL~s~~~~lp~~ 183 (216)
+.+.+|||-+-- .|+..|.+. -..++|.|-..+.|. ++-.+..+||.|--....|+.-.. +-
T Consensus 187 vsserylhls~~----ng~i~vdaa------f~qtlw~v~p~~sgs~~~egyligg~v~rl~hghmdecltips~---d~ 253 (5019)
T KOG2243|consen 187 VSSERYLHLSVG----NGNIHVDAA------FMQTLWNVAPICSGSEAAEGYLIGGDVLRLFHGHMDECLTIPSG---DH 253 (5019)
T ss_pred ecccceEEEEec----CCceeecHH------HHHHHhccCCCcCCchhhhceeecchHHHHhccCccceeecCCC---Cc
Confidence 999999986411 134444332 246789998877653 566788899999877767764321 22
Q ss_pred CCCCeeEEEEe----CCCCCCcEEEeee
Q 027975 184 AGGQQEVCGVR----EKRADNVWLAAEG 207 (216)
Q Consensus 184 ~~~q~EV~c~~----~~~~~~~W~i~~~ 207 (216)
+..|.--.-+. ..+.+++|++|-.
T Consensus 254 ~d~q~r~i~ye~g~~~~~a~slwr~e~l 281 (5019)
T KOG2243|consen 254 GDEQHRRIFYEAGAAGTHARSLWRLEPL 281 (5019)
T ss_pred cchhheeeeeeccccccchhhhhcccce
Confidence 34443322222 2357889998754
No 19
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.14 E-value=0.54 Score=34.09 Aligned_cols=102 Identities=16% Similarity=0.339 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceecc
Q 027975 79 NSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQ 158 (216)
Q Consensus 79 n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~ 158 (216)
+-.|+|.++... +...+|+++.++.+|...+.. ...+ ..|..... .+.++..|+|+...+|
T Consensus 2 nQ~W~~~~~~~~----------~g~Y~i~n~~sg~~L~v~~~~-~~~g-~~v~~~~~--~~~~~Q~W~i~~~~~g----- 62 (105)
T PF14200_consen 2 NQQWTFTPVGDS----------DGYYKIRNVNSGKYLDVAGGS-TANG-TNVQQWTC--NGNDNQQWKIEPVGDG----- 62 (105)
T ss_dssp GGEEEEEEEETT----------TTEEEEEETTTTEEEEEGCTT-CSTT-EBEEEEES--SSSGGGEEEEEESTTS-----
T ss_pred CCEEEEEEecCC----------CCEEEEEECCCCCEEEeCCCC-cCCC-cEEEEecC--CCCcCcEEEEEEecCC-----
Confidence 456888876432 356999999999999876532 1222 22333322 2367788999876443
Q ss_pred CCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeC--CCCCCcEEEe
Q 027975 159 DQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE--KRADNVWLAA 205 (216)
Q Consensus 159 ~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~--~~~~~~W~i~ 205 (216)
.++|++..++.+|-..+... ..+ -.|...+. ...+-.|+++
T Consensus 63 --~y~I~n~~s~~~Ldv~~~~~---~~g-~~v~~~~~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 63 --YYRIRNKNSGKVLDVAGGST---ANG-TNVQQWEYDNGSDNQQWKLE 105 (105)
T ss_dssp --EEEEEETSTTEEEEEGGGSS---STT-EBEEEEE-STSSGGGEEEEE
T ss_pred --eEEEEECCCCcEEEECCCCC---CCC-CEEEEEeCCCCCccCEEEeC
Confidence 48999999999998654321 112 34544432 3567788875
No 20
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=93.85 E-value=2 Score=31.79 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=70.2
Q ss_pred EEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCC
Q 027975 41 VLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLH 120 (216)
Q Consensus 41 ~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~ 120 (216)
.|+|+.. +|+||..-... -.|.+..........|.++... ...+.|+. ..++||...+.
T Consensus 3 ~v~Lrs~-~gkyl~~~~~g-------~~v~a~~~~~~~~e~F~l~~~~------------~g~v~Lrs-~~G~yls~~~~ 61 (119)
T cd00257 3 QVVLRSV-NGRYLSAEAGG-------DKVDANRDSLKGDETFTLEFDN------------TGKYALRS-HDGKYLSADSD 61 (119)
T ss_pred EEEEEEc-CCCEEEEeccC-------CEEEEcCccCCCceEEEEEECC------------CCeEEEEE-CCCcEEEEECC
Confidence 5889998 89999875311 1444444323335567777542 35678886 69999987542
Q ss_pred CCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeC-CCCC
Q 027975 121 ASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE-KRAD 199 (216)
Q Consensus 121 ~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~-~~~~ 199 (216)
..|.+... ......|.+|...+| .+.|+-. +|+||...+. + -++|... +...
T Consensus 62 -------g~l~~~~~---~~~~e~F~~e~~~~g-------~~al~~~-~G~yl~~~~~-------g--~l~~~~~~~~~~ 114 (119)
T cd00257 62 -------GGVQLEGH---PNADCRFTLEFHGDG-------KWALRAE-NGRYLGGDGS-------G--TLKASSETVGPD 114 (119)
T ss_pred -------CCEEecCC---CCCCcEEEEEECCCC-------eEEEEcC-CCCEEeecCC-------C--eEEEecCCCCcc
Confidence 12444332 246778998876443 3566644 8999998642 1 3566654 3455
Q ss_pred CcEE
Q 027975 200 NVWL 203 (216)
Q Consensus 200 ~~W~ 203 (216)
+.|.
T Consensus 115 e~f~ 118 (119)
T cd00257 115 ELFE 118 (119)
T ss_pred ceec
Confidence 5553
No 21
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=91.87 E-value=2.7 Score=30.33 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEec
Q 027975 39 GTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSH 118 (216)
Q Consensus 39 Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh 118 (216)
+...+|++..||.+|-.....-. ....|..+.....++-.|+|++... ..++|++..++.+|-..
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~---~g~~v~~~~~~~~~~Q~W~i~~~~~------------g~y~I~n~~s~~~Ldv~ 78 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTA---NGTNVQQWTCNGNDNQQWKIEPVGD------------GYYRIRNKNSGKVLDVA 78 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCS---TTEBEEEEESSSSGGGEEEEEESTT------------SEEEEEETSTTEEEEEG
T ss_pred CCEEEEEECCCCCEEEeCCCCcC---CCcEEEEecCCCCcCcEEEEEEecC------------CeEEEEECCCCcEEEEC
Confidence 56799999999999987543222 2344555544357788899998642 35999999999999776
Q ss_pred CCCCCCCCceEEEEecCCCCCCCCCcEEEE
Q 027975 119 LHASPISGNLEISCFGGEEESDTGDYWRVM 148 (216)
Q Consensus 119 ~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE 148 (216)
+.. +. ....|..+.. ..+.++-.|+||
T Consensus 79 ~~~-~~-~g~~v~~~~~-~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 79 GGS-TA-NGTNVQQWEY-DNGSDNQQWKLE 105 (105)
T ss_dssp GGS-SS-TTEBEEEEE--STSSGGGEEEEE
T ss_pred CCC-CC-CCCEEEEEeC-CCCCccCEEEeC
Confidence 432 11 2344554442 124677789876
No 22
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=89.55 E-value=4.7 Score=30.19 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=42.2
Q ss_pred EEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCC
Q 027975 104 IRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 177 (216)
Q Consensus 104 IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~ 177 (216)
++|.-.. +.+|..+.. ..|.+.++ ..+..+.|.|+.... ..|+|+++.++.||..+.
T Consensus 3 ~~Ly~~~-~~~L~i~~~-------g~V~gt~~--~~~~~s~~~i~~~~~-------g~V~i~~~~s~~YLcmn~ 59 (122)
T PF00167_consen 3 VQLYCRT-GYFLQINPN-------GTVDGTGD--DNSPYSVFEIHSVGF-------GVVRIRGVKSCRYLCMNK 59 (122)
T ss_dssp EEEEETT-SEEEEEETT-------SBEEEESS--TTSTTGEEEEEEEET-------TEEEEEETTTTEEEEEBT
T ss_pred EEEEECC-CeEEEECCC-------CeEeCCCC--cCcceeEEEEEeccc-------eEEEEEEecceEEEEECC
Confidence 4555544 888877643 56888874 257888999887633 478999999999999875
No 23
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=83.27 E-value=16 Score=26.81 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=58.9
Q ss_pred cEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEE
Q 027975 67 QSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWR 146 (216)
Q Consensus 67 q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~ 146 (216)
..|.+....-.....|.++...+ +..|.|+ ...++||.... ...|.+..+ ..++...|.
T Consensus 12 ~~l~an~~~~~~~e~f~le~~~~-----------~~~v~lr-s~~GkYls~~~-------~G~v~~~~~--~~~~~~~F~ 70 (111)
T PF06268_consen 12 AHLNANRASLSDWETFQLEFDDG-----------SYKVALR-SHNGKYLSVDS-------DGSVVADSE--TPGPDEFFE 70 (111)
T ss_dssp CBEEEEESSSSCGGSEEEEEETT-----------EEEEEEE-CTTSEEEEEET-------TSEEEEEES--SSSGGGCBE
T ss_pred CEEECChhcCcccEEEEEEEECC-----------CCEEEEE-cCCCCEEEEcC-------CCeEEecCC--CCCCCcEEE
Confidence 34555532133446788885543 2456666 56899997532 234666653 235677788
Q ss_pred EEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeC-CCCCCcEE
Q 027975 147 VMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE-KRADNVWL 203 (216)
Q Consensus 147 IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~-~~~~~~W~ 203 (216)
|+.. ...-+++...|+||....+ + -+.|... +.+.++|.
T Consensus 71 i~~~---------~~~~~~~~~nGkYl~~~~~-------g--~l~a~~~~~~~~elf~ 110 (111)
T PF06268_consen 71 IEWH---------GGKVALRASNGKYLSAGPN-------G--QLKANATSPGKDELFE 110 (111)
T ss_dssp EEEE---------TTEEEEECTTSCEEEEETT-------T--EEEEEESSSSGGGEEE
T ss_pred EEEC---------CCEEEEECCCCCEEeeCCC-------C--eEEEcCCCCCcceEEe
Confidence 7765 3344678889999995432 2 3455543 56777775
No 24
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=82.04 E-value=13 Score=28.22 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=36.8
Q ss_pred CCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCC
Q 027975 112 RKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 178 (216)
Q Consensus 112 ~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~ 178 (216)
+.+|.... +..|.|..+ ..+..+.|.|..... ..|+|+++.|+.||..+..
T Consensus 8 ~~~L~I~~-------dG~V~Gt~~--~~~~~s~l~~~s~~~-------g~v~i~~v~s~~YLCmn~~ 58 (123)
T cd00058 8 GFHLQILP-------DGTVDGTRD--DSSSYTILERIAVAV-------GVVSIKGVASCRYLCMNKC 58 (123)
T ss_pred CeEEEEcC-------CCcEecccC--CCCCCceEEEEECCC-------CEEEEEEcccceEEEECCC
Confidence 66776543 356777764 245678898876533 5789999999999998754
No 25
>KOG3743 consensus Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5) [Transcription]
Probab=76.68 E-value=5.7 Score=37.46 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCCCeeeeCCEEEEEeCC---C--CCCeeeecccCCCCCCccEE-EeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEE
Q 027975 31 SETVEITYGTVLKLMHEK---T--KFRLHSHEVPYGSGSGQQSV-TGFPDVDDANSYWIVKPILGASAKQGDTIKSGTII 104 (216)
Q Consensus 31 ~~~~~V~~Gd~I~L~h~~---T--~~~LhSh~~~y~~~s~~q~V-t~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~I 104 (216)
....-|+.|++|.|-|.. | -+|||.-...++.++.+-.. |..-. .|.++- - ..++ ......+|++|++|
T Consensus 312 nsDlcI~sGs~VsLFNRlrSQtvsTrYl~vE~gqF~as~~~W~aftI~l~-d~~e~g--~-~~~~-f~~r~g~i~ygsvV 386 (622)
T KOG3743|consen 312 NSDLCIRSGSKVSLFNRLRSQTVSTRYLSVENGQFHASSTQWGAFTIHLL-DDDENG--S-ESCD-FVVRDGYIKYGSVV 386 (622)
T ss_pred ccceeeccCCEEeeehhhhhhhcceeEEEeecceeeccCCccccEEEEEe-cCcccc--c-ccCC-CCCCCcceeeccEE
Confidence 334679999999998852 2 58999988888876544332 22221 222211 0 0111 11245789999999
Q ss_pred EEEeCCCCCeE
Q 027975 105 RLQHMRTRKWL 115 (216)
Q Consensus 105 rL~H~~T~~~L 115 (216)
+|+-..||..|
T Consensus 387 ~LV~~vTG~~l 397 (622)
T KOG3743|consen 387 KLVCSVTGITL 397 (622)
T ss_pred EEEeecccccC
Confidence 99999988654
No 26
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=72.28 E-value=40 Score=25.55 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCC
Q 027975 110 RTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 178 (216)
Q Consensus 110 ~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~ 178 (216)
.++.+|..+. +..|.|..+ ..++...|.+..... ..|+|+++.|+.||..+..
T Consensus 10 ~~~~~L~I~~-------~G~V~Gt~~--~~~~~~ile~~s~~~-------g~V~ik~~~s~~YLCmn~~ 62 (126)
T smart00442 10 RNGQHLQILP-------DGTVDGTRD--ESSSFTILEIIAVAV-------GVVAIKGVASCRYLCMNKC 62 (126)
T ss_pred CCCeEEEEcC-------CceEecccC--CCCcceEEEEEeccC-------CEEEEEEcccceEEEECCC
Confidence 3457787653 356766643 235667787765533 4689999999999998744
No 27
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=68.17 E-value=29 Score=27.36 Aligned_cols=133 Identities=11% Similarity=0.150 Sum_probs=71.3
Q ss_pred EEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCC-CC-Ceee--eCCEEEEEeCCCCCeEEe
Q 027975 42 LKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAK-QG-DTIK--SGTIIRLQHMRTRKWLHS 117 (216)
Q Consensus 42 I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~-~~-~~v~--~gd~IrL~H~~T~~~L~s 117 (216)
|.||++.||.-|+..... .+. -....|.+......+.. .. +.+. ....|+++++.++..|..
T Consensus 2 vsIrsl~tG~~Lt~~~~~--~~~------------~~~~nW~~~~~~s~~~~~~r~~~~~~~~~g~Vqf~n~~~~~CL~~ 67 (150)
T PF03498_consen 2 VSIRSLQTGAVLTNWALD--PGN------------WLDQNWGYSEIDSNDFGKARDRLIEFFPFGYVQFVNPKTGTCLAA 67 (150)
T ss_dssp EEEEETTTSEEEEESSSS--TTS------------CCGG-EEEECGGTGCCGCCGTEEEE-STTCEEEEEETTTSEEEEE
T ss_pred EEEEcCCCCcEEEEeecC--CCC------------eeEeeeEeEeecCchHhhhheeecccCCCCEEEEEcCCCCcceee
Confidence 678888888888774211 110 00112888776554321 11 2233 247999999999999976
Q ss_pred cCCCCCCCCceEEE-EecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCC-CCCCCCCCeeE-EEEe
Q 027975 118 HLHASPISGNLEIS-CFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKK-YQRIAGGQQEV-CGVR 194 (216)
Q Consensus 118 h~~~~p~s~~~EVs-~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~-lp~~~~~q~EV-~c~~ 194 (216)
- .+|-.-+. |-. .+....|.+....+ ..|+|+.+.+|..|.+.... +| ....... -|.+
T Consensus 68 ~-----~~G~~~~~~C~~----~~~~q~F~iiPttt-------gAVQIks~~~~~Cl~~~~~~~~~--~~~~i~l~~Cd~ 129 (150)
T PF03498_consen 68 Y-----GNGVFHYKSCDQ----DNLEQVFSIIPTTT-------GAVQIKSLSTGECLQTFNNSRTP--IYYSIGLTPCDK 129 (150)
T ss_dssp E-----TTCEEEE--TTT----CHGHH-EEEEEBTT-------S-EEEEETTT--EEEE-STTSS---SSEEEEEE---S
T ss_pred c-----CCCeEeecccCC----CChhceEEEEEcCC-------CcEEEEecCCCceEEecCCCcee--EEeeEEeeeCCC
Confidence 2 23323333 432 23457798876544 67899999999999987543 32 2222332 3522
Q ss_pred C--CCCCCcEEEee
Q 027975 195 E--KRADNVWLAAE 206 (216)
Q Consensus 195 ~--~~~~~~W~i~~ 206 (216)
. .+-+.+|.|..
T Consensus 130 ~~~~~l~~lw~itP 143 (150)
T PF03498_consen 130 SKEINLDQLWFITP 143 (150)
T ss_dssp -EEETGGGEEEEE-
T ss_pred cCCCCHHHcEEEcC
Confidence 2 24577998864
No 28
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=64.85 E-value=43 Score=24.91 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCCC
Q 027975 42 LKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHA 121 (216)
Q Consensus 42 I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~ 121 (216)
++|.-.. |.+|..++ .| .|.+.....+....|.|+.... ..|+|+++.++.||.-.+
T Consensus 3 ~~Ly~~~-~~~L~i~~----~g----~V~gt~~~~~~~s~~~i~~~~~------------g~V~i~~~~s~~YLcmn~-- 59 (122)
T PF00167_consen 3 VQLYCRT-GYFLQINP----NG----TVDGTGDDNSPYSVFEIHSVGF------------GVVRIRGVKSCRYLCMNK-- 59 (122)
T ss_dssp EEEEETT-SEEEEEET----TS----BEEEESSTTSTTGEEEEEEEET------------TEEEEEETTTTEEEEEBT--
T ss_pred EEEEECC-CeEEEECC----CC----eEeCCCCcCcceeEEEEEeccc------------eEEEEEEecceEEEEECC--
Confidence 3444443 78888763 22 5666666457888899987632 489999999999998653
Q ss_pred CCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEc--cCCceeccCCC
Q 027975 122 SPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHV--DTGGYLHSHPK 178 (216)
Q Consensus 122 ~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~--~t~~yL~s~~~ 178 (216)
...+.+... ...+..|+.+...++ -..+.-. ..+.||.-+..
T Consensus 60 -----~G~ly~~~~---~~~~C~F~e~~~~n~-------y~~~~s~~~~~~~yla~~~~ 103 (122)
T PF00167_consen 60 -----CGRLYGSKN---FNKDCVFREELLENG-------YNTYESAKYGRGWYLAFNRR 103 (122)
T ss_dssp -----TSBEEEESS---BTGGGEEEEEEETTS-------EEEEEESTTGTTEBCEBCTT
T ss_pred -----CCeEccccc---cCCCceEEEEEccCC-------EEEEEeccCCccEEEEECCC
Confidence 244555432 233777885544332 1111122 46788876544
No 29
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=51.94 E-value=90 Score=22.65 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=37.5
Q ss_pred EEEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCC
Q 027975 103 IIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 177 (216)
Q Consensus 103 ~IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~ 177 (216)
.|+|+.. +++||...... ..|.+.... . .....|.++... ...+.|+- ..|+||....
T Consensus 3 ~v~Lrs~-~gkyl~~~~~g------~~v~a~~~~-~-~~~e~F~l~~~~-------~g~v~Lrs-~~G~yls~~~ 60 (119)
T cd00257 3 QVVLRSV-NGRYLSAEAGG------DKVDANRDS-L-KGDETFTLEFDN-------TGKYALRS-HDGKYLSADS 60 (119)
T ss_pred EEEEEEc-CCCEEEEeccC------CEEEEcCcc-C-CCceEEEEEECC-------CCeEEEEE-CCCcEEEEEC
Confidence 4789988 89999765321 256665421 1 235678887643 34567775 5899998753
No 30
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=43.49 E-value=86 Score=25.00 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=36.6
Q ss_pred eeeCCEEEEEeC-CC----CCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCC------CCCCeeeeCCEE
Q 027975 36 ITYGTVLKLMHE-KT----KFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASA------KQGDTIKSGTII 104 (216)
Q Consensus 36 V~~Gd~I~L~h~-~T----~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~------~~~~~v~~gd~I 104 (216)
|..|++|.|-|. .+ -+|||.-... .+.+..-+... ..=+=|+|..++.... ....+|.+|+.|
T Consensus 3 I~~Gs~VsLFNRirSQTVsTrYL~v~~~~--~~~g~~f~as~----~~W~~F~I~lvd~~~~~~~~~~~~~~~I~YGs~V 76 (158)
T PF09270_consen 3 ISSGSTVSLFNRIRSQTVSTRYLHVENGA--SGHGPRFVASS----TQWDPFTIHLVDDPRSNAEPFDVREGYIHYGSTV 76 (158)
T ss_dssp -BTTCEEEEEEECTTECCCEEEEEEETT--------EEEEES----S----EEEEEE-TT--SSSCEEEE-SB-BTTSEE
T ss_pred ecCCCEEEeEcccccccccceeeecCCCc--ccceeeeeecc----CcccceEEEEecCCccccCCCCCCCCceecCCEE
Confidence 678999999985 33 4789764321 11111111111 1111244555522111 123489999999
Q ss_pred EEEeCCCCCeE
Q 027975 105 RLQHMRTRKWL 115 (216)
Q Consensus 105 rL~H~~T~~~L 115 (216)
.|+-..||.-|
T Consensus 77 ~Lv~~~TGv~s 87 (158)
T PF09270_consen 77 VLVCSVTGVSS 87 (158)
T ss_dssp EEEETTT-EBE
T ss_pred EEEECCCCccc
Confidence 99999998755
No 31
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=39.00 E-value=91 Score=23.49 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecC
Q 027975 50 KFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHL 119 (216)
Q Consensus 50 ~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~ 119 (216)
+.+|... |.| .|.|.....+....|.|.... ...|+|+++.|+.||.-..
T Consensus 8 ~~~L~I~----~dG----~V~Gt~~~~~~~s~l~~~s~~------------~g~v~i~~v~s~~YLCmn~ 57 (123)
T cd00058 8 GFHLQIL----PDG----TVDGTRDDSSSYTILERIAVA------------VGVVSIKGVASCRYLCMNK 57 (123)
T ss_pred CeEEEEc----CCC----cEecccCCCCCCceEEEEECC------------CCEEEEEEcccceEEEECC
Confidence 5666665 233 355555435567788888663 2479999999999998764
No 32
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=38.01 E-value=30 Score=24.07 Aligned_cols=20 Identities=15% Similarity=0.080 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCCCCC
Q 027975 4 VFFALAVFLFLGLNLDESSP 23 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (216)
++|+++.++++-|+||+-+.
T Consensus 48 lvFl~AlsLiCYS~~gnCif 67 (87)
T KOG4489|consen 48 LVFLIALSLICYSDPGNCIF 67 (87)
T ss_pred HHHHHHHHHHhhcCCCCEEE
Confidence 57889999999999998754
No 33
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division. The levels of Inp1p vary with the cell cycle, and Inp1 acts as a factor that retains peroxisomes in cells and controls peroxisome division []. Inp1p promotes the retention of peroxisomes in mother cells and buds of budding yeast by attaching peroxisomes to as-yet-unidentified cortical structures [].; GO: 0045033 peroxisome inheritance, 0005780 extrinsic to intraperoxisomal membrane
Probab=34.32 E-value=1e+02 Score=24.20 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=33.0
Q ss_pred CEEEEEeCCCC--CeEEec-CCCCCCCCceEEEEecCCC------CCCCCCcEEEEEec
Q 027975 102 TIIRLQHMRTR--KWLHSH-LHASPISGNLEISCFGGEE------ESDTGDYWRVMIEG 151 (216)
Q Consensus 102 d~IrL~H~~T~--~~L~sh-~~~~p~s~~~EVs~~~~~~------~~d~~~~W~IE~~~ 151 (216)
..++|+.+.++ .||.+- ..-+|+-..-.|.|..... ...+..+|+||+..
T Consensus 63 G~leIyqi~~~~v~fLs~G~~~v~PiLPK~q~~~vd~~~~kFvl~~~nPerYwrIe~~~ 121 (145)
T PF12634_consen 63 GPLEIYQIPGSDVAFLSCGGSIVHPILPKLQCWRVDGESSKFVLPIRNPERYWRIEFLS 121 (145)
T ss_pred CCEEEEEecCCceeeeecCchheecccccccEEEEcCCCcEEEEEcCCCCcEEEEEecC
Confidence 35677777665 799887 6666776666777773211 12344599999975
No 34
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=26.56 E-value=1.7e+02 Score=22.73 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=18.9
Q ss_pred eee-eCCEEEEEeCCCCCeEEecCC
Q 027975 97 TIK-SGTIIRLQHMRTRKWLHSHLH 120 (216)
Q Consensus 97 ~v~-~gd~IrL~H~~T~~~L~sh~~ 120 (216)
+|+ ....|+|+|+..+.|.+.-..
T Consensus 90 Pv~~d~~~i~lr~vq~~~~~~r~t~ 114 (139)
T smart00791 90 PLYVEMKKIRLLNVQLGHYTKRYTV 114 (139)
T ss_pred EEeccCceEEEEEecCCceEEeecC
Confidence 454 477999999999999876544
No 35
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=26.06 E-value=1.8e+02 Score=21.95 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=33.5
Q ss_pred CCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecC
Q 027975 48 KTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHL 119 (216)
Q Consensus 48 ~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~ 119 (216)
.++.+|..+. .| .|.|.....+....|.+..+.. ..|+|+++.|+.||....
T Consensus 10 ~~~~~L~I~~----~G----~V~Gt~~~~~~~~ile~~s~~~------------g~V~ik~~~s~~YLCmn~ 61 (126)
T smart00442 10 RNGQHLQILP----DG----TVDGTRDESSSFTILEIIAVAV------------GVVAIKGVASCRYLCMNK 61 (126)
T ss_pred CCCeEEEEcC----Cc----eEecccCCCCcceEEEEEeccC------------CEEEEEEcccceEEEECC
Confidence 3456777763 32 3545444335566677775532 368999999999998764
No 36
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=25.15 E-value=3.8e+02 Score=21.90 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCcee
Q 027975 77 DANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTW 156 (216)
Q Consensus 77 d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~ 156 (216)
+..-.|+...+.+ ...|.|+- ..|+||.+... .-|+|..+. ..+...|.+...+++
T Consensus 25 ~p~qV~va~~v~~-----------~~~iafKs-~~GkYLs~Dk~-------G~v~a~sdA--iGp~E~f~~V~~~~~--- 80 (191)
T PF06229_consen 25 DPRQVWVATRVPG-----------DEKIAFKS-GHGKYLSCDKD-------GIVSARSDA--IGPQEQFEPVFQDGK--- 80 (191)
T ss_dssp -TTT-EEEEE--S-----------SS-EEEEE-TTS-BEEE-SS-------SBEEE--SS----TTTBEEEE-STT----
T ss_pred ChhHeEEEEEecC-----------CCceEeec-cCccEEEEcCC-------CcEEEEeec--CCCceEEEEEECCCC---
Confidence 3466777776622 14688887 48999988643 457877643 346778998554322
Q ss_pred ccCCcEEEEEccCCceeccCC
Q 027975 157 RQDQRIRLQHVDTGGYLHSHP 177 (216)
Q Consensus 157 ~~~s~frL~H~~t~~yL~s~~ 177 (216)
.=+.....+|||+...
T Consensus 81 -----~a~~~~~~~~FLs~~~ 96 (191)
T PF06229_consen 81 -----PALFSSSNNKFLSVDE 96 (191)
T ss_dssp ------EEEE-TTS-BEEE-S
T ss_pred -----eEEEecCCCeEEEEec
Confidence 2222227899998876
No 37
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=22.53 E-value=1.2e+02 Score=22.63 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=18.5
Q ss_pred ccCCCCeeeeCCEEEEEeCCCC
Q 027975 29 ASSETVEITYGTVLKLMHEKTK 50 (216)
Q Consensus 29 ~~~~~~~V~~Gd~I~L~h~~T~ 50 (216)
++.....|..||+|+..+.+.+
T Consensus 12 F~P~~v~V~~GdTV~f~n~d~~ 33 (116)
T TIGR02375 12 FEPAYIRAAPGDTVTFVPTDKG 33 (116)
T ss_pred EeCCEEEECCCCEEEEEECCCC
Confidence 5666778999999999999865
Done!