BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027976
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 3 VQKMKFLMPCQ-IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIP 61
V+K+ C II+++ HL+E + ++ + KD D P+N+G L +GREP F P
Sbjct: 87 VEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTP 146
Query: 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 121
CT KG I LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+ T + I
Sbjct: 147 CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMID 206
Query: 122 --SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEA 179
ADIVIAA G V+G W+K GA V+DVGT PV DPS + GYRL+GDVC+EEA
Sbjct: 207 YLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEA 263
Query: 180 MRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 216
A+ I+PVPGGVGPMT+AMLL NTL++ K A G +
Sbjct: 264 AARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGVS 300
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 28 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87
++++A++ EKDVDG +N G LA FIPCTPKGC+EL+ +GV I G++AVV+G
Sbjct: 113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVG 172
Query: 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAV 147
RS IVG P LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+
Sbjct: 173 RSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAI 232
Query: 148 VLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLD 207
V+D C ++ D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++
Sbjct: 233 VID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
Query: 208 SAKR 211
SAKR
Sbjct: 290 SAKR 293
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 28 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87
++++A++ EKDVDG +N G LA FIPCTPKGC+EL+ +GV I G++AVV+G
Sbjct: 113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVG 172
Query: 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAV 147
RS IVG P LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+
Sbjct: 173 RSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAI 232
Query: 148 VLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLD 207
V+D C ++ D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++
Sbjct: 233 VID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
Query: 208 SAKR 211
SAKR
Sbjct: 290 SAKR 293
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 126/200 (63%), Gaps = 11/200 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ HLD +L+ + +KDVDGFHP NIG LA R PL PCTPKG + LL
Sbjct: 97 ILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLAS 154
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+G ++ G +AVV+G SNIVG P +L L TV++ H T++ S AD+V+ AAG
Sbjct: 155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGK 214
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
LV+G W+K GA+V+DVG + + RL+GDV YE A + AS ITPVPGGV
Sbjct: 215 PGLVKGEWIKEGAIVIDVGI---------NRQADGRLVGDVEYEVAAQRASWITPVPGGV 265
Query: 194 GPMTVAMLLSNTLDSAKRAY 213
GPMT A LL NTL +A+ +
Sbjct: 266 GPMTRACLLENTLHAAEHLH 285
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
+D K+L+ + +KDVDGFHP N+G L R P PCTP+G + LL R ++ G NA
Sbjct: 105 IDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTFGLNA 162
Query: 84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
VVIG SNIVG P S+ L T ++ H TKN AD++I A G + G W+K
Sbjct: 163 VVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIK 222
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
GA+V+DVG E G +++GDV +E+A + AS ITPVPGGVGPMTVA L+
Sbjct: 223 EGAIVIDVGIN--------RLENG-KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIE 273
Query: 204 NTLDS 208
NTL +
Sbjct: 274 NTLQA 278
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 120/189 (63%), Gaps = 10/189 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+ + IL+++ KDVDGFHP+N+G L + G E F+PCTP G +LL +++ GK+
Sbjct: 104 HICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKD 162
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AV+IG SNIVG P + L ATVS+ H TK+ T +AD++I AAG NL+R +
Sbjct: 163 AVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXV 222
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K G +V+DVG ++ +++GDV +EE + +S ITPVPGGVGP T+A LL
Sbjct: 223 KEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLL 273
Query: 203 SNTLDSAKR 211
NT+ SAK
Sbjct: 274 ENTVKSAKN 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 117/192 (60%), Gaps = 12/192 (6%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
+DE DA+SL KDVDG L G +AM E + TP G + +L + +EI GK+
Sbjct: 124 QIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKH 181
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+GRS I+G P +++L + +ATV+I H+ T+N ++ +ADI++ A G A L++ W+
Sbjct: 182 AVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWI 241
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAVV+D G P D +GD+ + +AS TPVPGGVGPMT+ L+
Sbjct: 242 KQGAVVVDAGFHPRDGGG----------VGDIQLQGIEEIASAYTPVPGGVGPMTITTLI 291
Query: 203 SNTLDSAKRAYG 214
T+++A++A G
Sbjct: 292 RQTVEAAEKALG 303
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 116/198 (58%), Gaps = 11/198 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+++ ++ ++ EKDVDGFHP N+G L +R ++ L CTPKG + +L
Sbjct: 96 ILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLRE 154
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
G++ G AVV+G SN+VG P S LL ATV+ H T + + T++ADI+I A G
Sbjct: 155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK 214
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
N + +K GAVV+DVG VD +++GDV + + ITPVPGGV
Sbjct: 215 PNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGV 264
Query: 194 GPMTVAMLLSNTLDSAKR 211
GPMT+ LL NT A+
Sbjct: 265 GPMTITELLYNTFQCAQE 282
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 15/199 (7%)
Query: 15 IIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS 74
I+++ HLDE L+ V KD DG HP N+G L + PL PCTP+G + LL R
Sbjct: 95 IVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPL--PCTPRGIVHLLRRY 152
Query: 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAG 132
+ I G + VVIGR VG P LLL R +ATV++ H T++ +T +ADIV+AA G
Sbjct: 153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVG 212
Query: 133 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 192
VA+L+ ++PGA V+DVG D L+GDV + + LA ++P PGG
Sbjct: 213 VAHLLTADMVRPGAAVIDVGVSRTDDG----------LVGDV-HPDVWELAGHVSPNPGG 261
Query: 193 VGPMTVAMLLSNTLDSAKR 211
VGP+T A LL+N ++ A+R
Sbjct: 262 VGPLTRAFLLTNVVELAER 280
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
D +I+ + KDVD P N G +A+ RE +P TP+ I+++ G +N
Sbjct: 98 FDYYEIVRNIPYYKDVDALSPYNQGLIAL-NRE-FLVPATPRAVIDIMDYYGYH---ENT 152
Query: 84 V-VIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
V ++ RS +VG P S++L + TVS+ H+ TK+ +T + IV+ A G + +
Sbjct: 153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMV 212
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
PG+VV+DVG V+ V +GD +E+ ITPVPGGVGP+T +L
Sbjct: 213 TPGSVVIDVGINYVNDKV----------VGDANFEDLSEYVEAITPVPGGVGPITATNIL 262
Query: 203 SNTLDSAK 210
N + +A+
Sbjct: 263 ENVVKAAE 270
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 83/202 (41%), Gaps = 41/202 (20%)
Query: 36 EKDVDGFHPL-------NIGNLAMRGREPLFIPCTPKGCIELL---------IRSGVEIM 79
EKDV+G + + N+ L R +PCTP +++L + G +
Sbjct: 117 EKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLY 176
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
GK +VI RS IVG P + LL ATV V N ++ T + + V +L
Sbjct: 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDV--NNIQKFTRGESLKLNKHHVEDLGEY 234
Query: 140 S--WLKPGAVVLDVGTCPVDVSVDPSCEYG----YRLMGDVC---------YEEAMRLAS 184
S LK ++ DV V PS Y Y G VC ++ AS
Sbjct: 235 SEDLLKKCSLDSDVVITGV-----PSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKAS 289
Query: 185 VITPVPGGVGPMTVAMLLSNTL 206
+ P+ G V T+AMLL N L
Sbjct: 290 LYVPMTGKV---TIAMLLRNML 308
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 96 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 152
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 96 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 152
T+LLLQ H + + + L + E+I S+A I + A V L WL P +++
Sbjct: 1490 TNLLLQAHLSRMQLSAELQSDTEEILSKA-IRLIQACVDVLSSNGWLSPALAAMELA 1545
>pdb|4ARJ|A Chain A, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
pdb|4ARJ|B Chain B, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
Length = 339
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 2 VVQKMKFLM-PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNL 50
+ Q +FL I++ I +++ +DEG L + KD +G++ + IG+L
Sbjct: 153 ISQLKEFLRRSVNIVVNIFEMLRIDEGLRL---KIYKDTEGYYTIGIGHL 199
>pdb|1P0T|A Chain A, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|B Chain B, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|C Chain C, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|D Chain D, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|E Chain E, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|F Chain F, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|G Chain G, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|H Chain H, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|I Chain I, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|J Chain J, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|K Chain K, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|L Chain L, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|M Chain M, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|N Chain N, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|O Chain O, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|P Chain P, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Q Chain Q, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|R Chain R, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|S Chain S, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|T Chain T, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|U Chain U, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|V Chain V, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|W Chain W, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|X Chain X, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Y Chain Y, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|Z Chain Z, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|0 Chain 0, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|1 Chain 1, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|2 Chain 2, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|3 Chain 3, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|4 Chain 4, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|5 Chain 5, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|6 Chain 6, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|7 Chain 7, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|8 Chain 8, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|9 Chain 9, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|AA Chain a, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|BB Chain b, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|CC Chain c, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|DD Chain d, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|EE Chain e, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|FF Chain f, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|GG Chain g, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|HH Chain h, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|II Chain i, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|JJ Chain j, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|KK Chain k, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|LL Chain l, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|MM Chain m, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|NN Chain n, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|OO Chain o, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|PP Chain p, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|QQ Chain q, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|RR Chain r, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|SS Chain s, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|TT Chain t, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|UU Chain u, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|VV Chain v, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|WW Chain w, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
pdb|1P0T|XX Chain x, Crystal Structure Of The Baff-Baff-R Complex (Part Ii)
Length = 63
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 45 LNIGNLAMRGRE-PLFIPCTPKGCIELLIRSGV 76
+ G ++RGR+ P PC P C +LL+R V
Sbjct: 1 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCV 33
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNL 50
+++ I +++ +DEG L + KD +G++ + IG+L
Sbjct: 234 VMVNIFEMLRIDEGLRL---KIYKDTEGYYTIGIGHL 267
>pdb|1OSX|A Chain A, Solution Structure Of The Extracellular Domain Of Blys
Receptor 3 (Br3)
Length = 61
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 45 LNIGNLAMRGRE-PLFIPCTPKGCIELLIRSGV 76
+ G ++RGR+ P PC P C +LL+R V
Sbjct: 1 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCV 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,216,405
Number of Sequences: 62578
Number of extensions: 238782
Number of successful extensions: 1122
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 28
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)