Query 027976
Match_columns 216
No_of_seqs 206 out of 1477
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0190 FolD 5,10-methylene-te 100.0 6.4E-66 1.4E-70 445.2 20.9 197 8-215 86-282 (283)
2 PLN02897 tetrahydrofolate dehy 100.0 1.9E-65 4.2E-70 454.0 20.3 204 8-214 142-345 (345)
3 PLN02616 tetrahydrofolate dehy 100.0 3.4E-65 7.3E-70 454.2 20.8 204 9-215 160-363 (364)
4 PRK14171 bifunctional 5,10-met 100.0 1E-64 2.2E-69 441.9 20.4 195 9-213 89-283 (288)
5 PRK14170 bifunctional 5,10-met 100.0 1.3E-64 2.8E-69 440.5 20.2 196 9-215 88-283 (284)
6 PLN02516 methylenetetrahydrofo 100.0 2.8E-64 6E-69 441.2 21.2 204 9-215 96-299 (299)
7 PRK14185 bifunctional 5,10-met 100.0 3.3E-64 7.2E-69 439.6 20.9 199 9-212 88-290 (293)
8 PRK14169 bifunctional 5,10-met 100.0 3.4E-64 7.3E-69 437.8 20.3 194 9-213 87-280 (282)
9 PRK14190 bifunctional 5,10-met 100.0 3.7E-64 8.1E-69 438.2 20.2 196 9-215 89-284 (284)
10 PRK14168 bifunctional 5,10-met 100.0 4.8E-64 1E-68 439.7 20.7 203 9-215 90-297 (297)
11 PRK14172 bifunctional 5,10-met 100.0 2.8E-64 6.2E-69 437.5 18.9 190 9-210 89-278 (278)
12 PRK14166 bifunctional 5,10-met 100.0 5.7E-64 1.2E-68 436.4 20.3 195 9-213 87-281 (282)
13 PRK14182 bifunctional 5,10-met 100.0 5.7E-64 1.2E-68 436.1 20.2 194 9-213 87-281 (282)
14 PRK14187 bifunctional 5,10-met 100.0 7.4E-64 1.6E-68 437.6 20.2 200 9-214 89-288 (294)
15 PRK14180 bifunctional 5,10-met 100.0 1.3E-63 2.8E-68 434.1 20.0 195 8-213 87-281 (282)
16 PRK14167 bifunctional 5,10-met 100.0 1.8E-63 4E-68 436.0 20.2 201 9-215 88-292 (297)
17 PRK14181 bifunctional 5,10-met 100.0 2.2E-63 4.7E-68 433.4 19.7 199 9-212 83-285 (287)
18 PRK14186 bifunctional 5,10-met 100.0 4.1E-63 8.9E-68 433.8 20.4 199 9-214 89-287 (297)
19 PRK14183 bifunctional 5,10-met 100.0 3.8E-63 8.3E-68 430.7 19.8 194 8-212 87-280 (281)
20 PRK14184 bifunctional 5,10-met 100.0 3.5E-63 7.5E-68 432.2 19.5 194 9-214 88-285 (286)
21 PRK14177 bifunctional 5,10-met 100.0 4.7E-63 1E-67 430.7 19.1 190 9-213 90-279 (284)
22 PRK14193 bifunctional 5,10-met 100.0 9.8E-63 2.1E-67 429.0 19.9 194 9-214 89-284 (284)
23 PRK14189 bifunctional 5,10-met 100.0 1.1E-62 2.5E-67 429.1 20.2 195 9-214 89-283 (285)
24 PRK10792 bifunctional 5,10-met 100.0 2.1E-62 4.5E-67 427.1 19.6 195 9-214 90-284 (285)
25 PRK14173 bifunctional 5,10-met 100.0 2.3E-62 4.9E-67 427.3 19.7 195 9-213 86-282 (287)
26 PRK14176 bifunctional 5,10-met 100.0 2.7E-62 5.9E-67 426.5 19.5 192 9-212 95-286 (287)
27 PRK14191 bifunctional 5,10-met 100.0 3.3E-62 7.2E-67 425.9 19.8 194 9-213 88-281 (285)
28 PRK14179 bifunctional 5,10-met 100.0 7.7E-62 1.7E-66 423.7 19.9 195 9-214 89-283 (284)
29 PRK14174 bifunctional 5,10-met 100.0 1.5E-61 3.3E-66 424.1 20.8 202 9-213 88-293 (295)
30 PRK14175 bifunctional 5,10-met 100.0 1.4E-61 3.1E-66 422.6 20.4 196 9-215 89-284 (286)
31 PRK14178 bifunctional 5,10-met 100.0 8.1E-61 1.8E-65 416.1 18.5 193 8-212 82-274 (279)
32 PRK14194 bifunctional 5,10-met 100.0 2.8E-60 6E-65 416.6 20.4 197 9-214 90-287 (301)
33 KOG4230 C1-tetrahydrofolate sy 100.0 4.6E-60 9.9E-65 435.1 18.7 201 10-213 92-292 (935)
34 PRK14188 bifunctional 5,10-met 100.0 2.6E-58 5.7E-63 404.3 21.1 200 9-213 89-289 (296)
35 PRK14192 bifunctional 5,10-met 100.0 8.1E-58 1.8E-62 400.0 19.4 200 3-214 83-283 (283)
36 KOG0089 Methylenetetrahydrofol 100.0 8.8E-57 1.9E-61 382.9 16.7 206 6-214 92-307 (309)
37 PF02882 THF_DHG_CYH_C: Tetrah 100.0 2.5E-51 5.3E-56 331.6 14.3 160 43-212 1-160 (160)
38 cd01079 NAD_bind_m-THF_DH NAD 100.0 2E-45 4.3E-50 303.8 15.4 158 35-213 1-196 (197)
39 cd01080 NAD_bind_m-THF_DH_Cycl 100.0 8.6E-42 1.9E-46 278.4 15.6 168 35-210 1-168 (168)
40 cd05212 NAD_bind_m-THF_DH_Cycl 100.0 2.6E-39 5.7E-44 256.4 14.1 136 56-209 4-139 (140)
41 PRK12549 shikimate 5-dehydroge 100.0 1E-28 2.2E-33 216.5 13.2 182 2-216 55-268 (284)
42 PRK12749 quinate/shikimate deh 100.0 3.4E-28 7.4E-33 213.7 12.1 182 2-216 52-274 (288)
43 PRK12548 shikimate 5-dehydroge 100.0 7.6E-28 1.7E-32 211.4 12.4 182 2-216 54-277 (289)
44 PRK14027 quinate/shikimate deh 100.0 4.9E-28 1.1E-32 212.2 11.1 182 2-216 54-270 (283)
45 COG0169 AroE Shikimate 5-dehyd 100.0 9.5E-28 2.1E-32 209.9 12.6 181 2-215 51-266 (283)
46 PRK12550 shikimate 5-dehydroge 99.9 7.4E-28 1.6E-32 210.0 11.4 181 2-216 51-257 (272)
47 PRK00258 aroE shikimate 5-dehy 99.9 2.2E-27 4.7E-32 207.3 12.0 181 2-215 50-261 (278)
48 TIGR01809 Shik-DH-AROM shikima 99.9 5.6E-27 1.2E-31 205.3 12.6 180 3-216 52-272 (282)
49 TIGR00507 aroE shikimate 5-deh 99.9 5.2E-26 1.1E-30 197.7 11.8 181 2-215 45-254 (270)
50 PLN02520 bifunctional 3-dehydr 99.9 1E-24 2.2E-29 205.8 11.7 182 2-216 295-516 (529)
51 PRK09310 aroDE bifunctional 3- 99.9 1.5E-23 3.2E-28 195.7 10.5 178 2-215 260-456 (477)
52 PRK08306 dipicolinate synthase 99.7 8.5E-16 1.8E-20 135.6 11.4 130 63-210 134-286 (296)
53 TIGR02853 spore_dpaA dipicolin 99.6 4.3E-15 9.3E-20 130.7 11.4 129 62-209 132-284 (287)
54 cd01065 NAD_bind_Shikimate_DH 99.6 5.9E-14 1.3E-18 111.2 12.3 128 63-214 2-155 (155)
55 PF01488 Shikimate_DH: Shikima 99.5 8.4E-14 1.8E-18 109.4 5.4 87 70-157 2-114 (135)
56 COG0373 HemA Glutamyl-tRNA red 99.3 4.8E-12 1E-16 115.9 6.9 117 29-157 138-279 (414)
57 cd05311 NAD_bind_2_malic_enz N 99.2 2.2E-11 4.7E-16 103.7 8.4 92 63-157 8-132 (226)
58 cd05191 NAD_bind_amino_acid_DH 99.2 4.4E-11 9.6E-16 86.8 8.0 78 62-152 1-86 (86)
59 PF00670 AdoHcyase_NAD: S-aden 99.2 6.5E-11 1.4E-15 95.9 8.9 92 65-157 7-115 (162)
60 PRK13940 glutamyl-tRNA reducta 99.2 3.4E-11 7.3E-16 111.0 7.4 143 63-214 164-330 (414)
61 cd01078 NAD_bind_H4MPT_DH NADP 99.2 3.3E-10 7.2E-15 93.6 11.7 95 63-157 7-134 (194)
62 PTZ00075 Adenosylhomocysteinas 99.1 2.5E-10 5.3E-15 106.4 6.7 84 71-155 245-344 (476)
63 PRK14982 acyl-ACP reductase; P 99.0 5E-09 1.1E-13 94.3 11.9 87 71-157 146-251 (340)
64 PRK00676 hemA glutamyl-tRNA re 98.9 1.6E-09 3.4E-14 97.3 7.1 92 64-157 159-266 (338)
65 PLN00203 glutamyl-tRNA reducta 98.9 5.2E-09 1.1E-13 99.0 7.4 143 63-214 247-426 (519)
66 PRK05476 S-adenosyl-L-homocyst 98.8 1.7E-08 3.6E-13 93.4 8.2 94 62-156 193-303 (425)
67 PRK00045 hemA glutamyl-tRNA re 98.8 2.5E-08 5.5E-13 92.1 8.5 94 63-157 165-285 (423)
68 TIGR01035 hemA glutamyl-tRNA r 98.7 2.6E-08 5.6E-13 92.0 7.4 93 64-157 164-282 (417)
69 COG0499 SAM1 S-adenosylhomocys 98.6 8.1E-08 1.8E-12 86.3 7.5 91 65-156 193-300 (420)
70 PF00763 THF_DHG_CYH: Tetrahyd 98.6 1.9E-08 4E-13 77.5 2.9 33 8-40 85-117 (117)
71 TIGR00936 ahcY adenosylhomocys 98.6 2.1E-07 4.5E-12 85.7 9.7 94 62-156 176-286 (406)
72 cd05213 NAD_bind_Glutamyl_tRNA 98.6 2.1E-07 4.5E-12 82.7 8.5 93 64-157 162-278 (311)
73 cd00401 AdoHcyase S-adenosyl-L 98.6 2.4E-07 5.1E-12 85.5 9.0 96 60-156 182-293 (413)
74 TIGR00518 alaDH alanine dehydr 98.6 2.9E-07 6.3E-12 83.8 9.2 124 78-210 165-320 (370)
75 TIGR02992 ectoine_eutC ectoine 98.5 7.5E-07 1.6E-11 79.7 9.0 92 60-154 111-226 (326)
76 PLN02494 adenosylhomocysteinas 98.5 6.1E-07 1.3E-11 83.8 8.4 91 63-154 236-343 (477)
77 PF02826 2-Hacid_dh_C: D-isome 98.4 6.5E-07 1.4E-11 73.3 7.2 82 73-155 29-130 (178)
78 PRK08291 ectoine utilization p 98.3 2.3E-06 4.9E-11 76.7 8.7 92 60-154 114-229 (330)
79 PLN02928 oxidoreductase family 98.3 2.1E-06 4.6E-11 77.6 7.8 136 76-213 155-335 (347)
80 COG5322 Predicted dehydrogenas 98.3 3.5E-06 7.5E-11 73.5 8.3 147 11-157 71-266 (351)
81 cd01075 NAD_bind_Leu_Phe_Val_D 98.2 5.7E-06 1.2E-10 69.2 8.1 94 61-156 3-119 (200)
82 KOG1370 S-adenosylhomocysteine 98.2 3.5E-06 7.6E-11 74.6 6.7 84 73-157 207-306 (434)
83 TIGR00561 pntA NAD(P) transhyd 98.2 9.6E-06 2.1E-10 76.7 9.7 90 65-155 139-287 (511)
84 PRK00257 erythronate-4-phospha 98.1 9.8E-06 2.1E-10 74.2 8.6 144 70-215 106-280 (381)
85 PRK15438 erythronate-4-phospha 98.1 9.9E-06 2.1E-10 74.1 8.5 143 71-215 107-280 (378)
86 PRK06718 precorrin-2 dehydroge 98.1 4.9E-06 1.1E-10 69.8 6.0 113 76-207 6-142 (202)
87 PRK13243 glyoxylate reductase; 98.1 8.1E-06 1.8E-10 73.3 7.8 80 76-156 146-244 (333)
88 PRK08618 ornithine cyclodeamin 98.1 1.7E-05 3.6E-10 71.0 9.7 76 78-155 125-224 (325)
89 PRK06141 ornithine cyclodeamin 98.1 2.6E-05 5.7E-10 69.4 9.7 76 77-154 122-220 (314)
90 PRK07340 ornithine cyclodeamin 98.1 3.2E-05 6.9E-10 68.7 10.0 78 77-155 122-220 (304)
91 PRK08410 2-hydroxyacid dehydro 98.0 1.5E-05 3.3E-10 70.9 7.9 80 76-156 141-236 (311)
92 PRK06932 glycerate dehydrogena 98.0 1.3E-05 2.8E-10 71.6 7.3 136 76-213 143-310 (314)
93 PRK06487 glycerate dehydrogena 98.0 1.5E-05 3.3E-10 71.1 7.5 79 77-156 145-237 (317)
94 PRK07574 formate dehydrogenase 98.0 1.4E-05 3.1E-10 73.3 7.4 135 76-213 188-357 (385)
95 PRK06436 glycerate dehydrogena 98.0 1.7E-05 3.6E-10 70.5 7.6 81 76-157 118-214 (303)
96 PRK15469 ghrA bifunctional gly 98.0 1.8E-05 3.8E-10 70.6 7.6 80 76-156 132-230 (312)
97 PRK12480 D-lactate dehydrogena 98.0 1.7E-05 3.8E-10 71.2 7.4 80 76-156 142-238 (330)
98 COG0686 Ald Alanine dehydrogen 98.0 8.9E-06 1.9E-10 72.2 5.0 77 78-155 166-271 (371)
99 COG1748 LYS9 Saccharopine dehy 98.0 1.8E-05 4E-10 72.4 6.9 112 81-209 2-141 (389)
100 PRK08605 D-lactate dehydrogena 98.0 3.2E-05 6.9E-10 69.5 8.3 80 76-156 142-240 (332)
101 PLN02306 hydroxypyruvate reduc 97.9 3.5E-05 7.6E-10 70.7 7.6 80 76-156 161-276 (386)
102 COG0111 SerA Phosphoglycerate 97.9 4.3E-05 9.2E-10 68.6 7.5 136 75-213 137-306 (324)
103 PF03446 NAD_binding_2: NAD bi 97.9 2.6E-05 5.7E-10 62.8 5.6 75 81-156 2-98 (163)
104 PF01262 AlaDh_PNT_C: Alanine 97.9 1.1E-05 2.3E-10 65.5 3.3 77 78-155 18-142 (168)
105 PRK06719 precorrin-2 dehydroge 97.9 2E-05 4.4E-10 63.5 4.9 115 76-208 9-143 (157)
106 PLN03139 formate dehydrogenase 97.9 4E-05 8.7E-10 70.3 7.4 136 76-213 195-364 (386)
107 PRK15409 bifunctional glyoxyla 97.9 4.7E-05 1E-09 68.3 7.6 136 75-213 140-309 (323)
108 PF13241 NAD_binding_7: Putati 97.8 2.8E-05 6.2E-10 58.1 4.5 59 76-135 3-72 (103)
109 PRK11790 D-3-phosphoglycerate 97.8 7.6E-05 1.7E-09 68.9 7.6 79 76-155 147-242 (409)
110 PRK09424 pntA NAD(P) transhydr 97.8 0.0001 2.3E-09 69.8 8.5 90 65-155 140-288 (509)
111 TIGR01327 PGDH D-3-phosphoglyc 97.7 9.4E-05 2E-09 70.4 7.9 81 75-156 133-233 (525)
112 PRK13581 D-3-phosphoglycerate 97.7 8.9E-05 1.9E-09 70.6 7.7 80 76-156 136-234 (526)
113 PRK14619 NAD(P)H-dependent gly 97.7 0.00012 2.7E-09 64.7 7.4 73 79-152 3-82 (308)
114 COG1052 LdhA Lactate dehydroge 97.7 0.00014 3E-09 65.4 7.2 80 76-156 142-240 (324)
115 COG2084 MmsB 3-hydroxyisobutyr 97.6 0.00018 4E-09 63.4 7.5 74 81-155 1-98 (286)
116 TIGR01470 cysG_Nterm siroheme 97.6 0.0001 2.2E-09 61.9 5.4 59 76-135 5-81 (205)
117 PF01210 NAD_Gly3P_dh_N: NAD-d 97.6 0.00012 2.7E-09 58.6 5.6 70 82-152 1-103 (157)
118 PRK11199 tyrA bifunctional cho 97.6 0.00018 3.8E-09 65.7 6.9 74 79-154 97-177 (374)
119 TIGR02371 ala_DH_arch alanine 97.6 0.00024 5.2E-09 63.7 7.5 75 79-154 127-224 (325)
120 cd05312 NAD_bind_1_malic_enz N 97.5 0.00022 4.8E-09 62.7 6.8 92 63-156 8-143 (279)
121 PRK06823 ornithine cyclodeamin 97.5 0.00033 7.1E-09 62.6 7.8 76 79-155 127-225 (315)
122 cd00762 NAD_bind_malic_enz NAD 97.5 0.00023 4.9E-09 61.8 5.9 92 63-156 8-144 (254)
123 PF03807 F420_oxidored: NADP o 97.5 0.00014 3.1E-09 52.8 3.9 70 82-152 1-94 (96)
124 PRK06046 alanine dehydrogenase 97.5 0.0004 8.8E-09 62.1 7.5 74 79-154 128-225 (326)
125 PRK06407 ornithine cyclodeamin 97.4 0.00047 1E-08 61.2 7.6 76 79-155 116-215 (301)
126 PF03949 Malic_M: Malic enzyme 97.4 0.00022 4.8E-09 61.9 5.0 92 63-156 8-144 (255)
127 PF07991 IlvN: Acetohydroxy ac 97.4 0.00037 8.1E-09 56.6 5.9 55 78-133 2-70 (165)
128 PRK12862 malic enzyme; Reviewe 97.4 0.00047 1E-08 68.3 7.7 92 62-156 175-295 (763)
129 PRK01438 murD UDP-N-acetylmura 97.4 0.00067 1.5E-08 63.4 8.1 134 71-209 7-147 (480)
130 COG1648 CysG Siroheme synthase 97.4 0.00034 7.5E-09 59.1 5.5 116 76-209 8-147 (210)
131 PLN02256 arogenate dehydrogena 97.4 0.001 2.2E-08 59.2 8.6 77 76-153 32-128 (304)
132 PLN02712 arogenate dehydrogena 97.3 0.00056 1.2E-08 67.0 7.5 80 74-154 363-462 (667)
133 TIGR01505 tartro_sem_red 2-hyd 97.3 0.00058 1.3E-08 59.7 6.8 72 82-154 1-95 (291)
134 PRK11559 garR tartronate semia 97.3 0.00076 1.6E-08 59.0 7.4 74 81-155 3-99 (296)
135 COG0287 TyrA Prephenate dehydr 97.3 0.00066 1.4E-08 59.8 6.9 74 80-155 3-101 (279)
136 PRK07232 bifunctional malic en 97.3 0.00094 2E-08 66.0 8.7 91 63-156 168-287 (752)
137 PRK07589 ornithine cyclodeamin 97.3 0.00095 2.1E-08 60.5 7.9 76 79-155 128-228 (346)
138 PRK12861 malic enzyme; Reviewe 97.3 0.00077 1.7E-08 66.7 7.7 91 63-156 172-291 (764)
139 PRK15461 NADH-dependent gamma- 97.3 0.00068 1.5E-08 59.7 6.6 75 81-156 2-99 (296)
140 PF02423 OCD_Mu_crystall: Orni 97.2 0.0012 2.6E-08 58.8 7.9 76 79-155 127-227 (313)
141 KOG0069 Glyoxylate/hydroxypyru 97.2 0.0007 1.5E-08 61.0 6.3 80 76-156 158-257 (336)
142 PLN03129 NADP-dependent malic 97.2 0.0016 3.4E-08 62.5 8.6 93 62-156 303-439 (581)
143 COG2085 Predicted dinucleotide 97.2 0.00067 1.5E-08 57.3 5.5 72 81-155 2-95 (211)
144 PRK05579 bifunctional phosphop 97.1 0.0063 1.4E-07 56.2 11.8 95 62-156 168-306 (399)
145 PRK07502 cyclohexadienyl dehyd 97.1 0.001 2.3E-08 58.7 6.4 74 80-154 6-102 (307)
146 COG0281 SfcA Malic enzyme [Ene 97.1 0.0019 4.1E-08 59.5 7.8 91 63-156 182-303 (432)
147 PRK13403 ketol-acid reductoiso 97.1 0.0013 2.9E-08 59.0 6.5 71 77-148 13-102 (335)
148 PF00056 Ldh_1_N: lactate/mala 97.1 0.0015 3.4E-08 51.5 6.1 54 82-135 2-81 (141)
149 PRK06545 prephenate dehydrogen 97.1 0.0013 2.8E-08 59.6 6.4 74 81-155 1-98 (359)
150 PRK07417 arogenate dehydrogena 97.0 0.00073 1.6E-08 59.0 4.4 73 82-155 2-94 (279)
151 PRK08818 prephenate dehydrogen 97.0 0.0017 3.7E-08 59.3 6.4 77 79-155 3-91 (370)
152 PRK14106 murD UDP-N-acetylmura 97.0 0.002 4.4E-08 59.4 7.0 37 77-114 2-38 (450)
153 cd05291 HicDH_like L-2-hydroxy 97.0 0.0022 4.7E-08 56.8 6.7 54 81-135 1-80 (306)
154 PF01118 Semialdhyde_dh: Semia 96.9 0.001 2.3E-08 50.8 4.0 75 82-156 1-101 (121)
155 PRK05562 precorrin-2 dehydroge 96.9 0.0025 5.4E-08 54.4 6.7 59 76-135 21-97 (223)
156 TIGR01692 HIBADH 3-hydroxyisob 96.9 0.0018 3.9E-08 56.7 6.0 70 85-155 1-93 (288)
157 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.002 4.4E-08 59.5 6.3 74 81-155 4-122 (415)
158 PRK05479 ketol-acid reductoiso 96.9 0.0026 5.5E-08 57.4 6.6 70 78-148 15-104 (330)
159 PRK12490 6-phosphogluconate de 96.9 0.0031 6.8E-08 55.5 7.1 72 82-154 2-96 (299)
160 PRK13529 malate dehydrogenase; 96.9 0.0031 6.8E-08 60.2 7.5 93 62-156 277-420 (563)
161 PRK02472 murD UDP-N-acetylmura 96.9 0.0023 4.9E-08 59.1 6.2 127 77-209 2-133 (447)
162 COG2423 Predicted ornithine cy 96.9 0.0052 1.1E-07 55.4 8.2 76 79-155 129-228 (330)
163 PRK09260 3-hydroxybutyryl-CoA 96.8 0.0029 6.3E-08 55.3 6.5 74 81-155 2-121 (288)
164 PRK15059 tartronate semialdehy 96.8 0.0029 6.3E-08 55.8 6.4 73 82-155 2-96 (292)
165 PF13460 NAD_binding_10: NADH( 96.8 0.003 6.5E-08 50.6 5.9 52 83-134 1-71 (183)
166 PRK07679 pyrroline-5-carboxyla 96.8 0.0035 7.6E-08 54.6 6.7 71 80-151 3-98 (279)
167 PF02737 3HCDH_N: 3-hydroxyacy 96.8 0.0028 6.1E-08 52.0 5.7 31 82-113 1-31 (180)
168 PRK08655 prephenate dehydrogen 96.8 0.0034 7.3E-08 58.5 6.8 71 82-153 2-93 (437)
169 PRK10637 cysG siroheme synthas 96.8 0.0022 4.7E-08 60.1 5.5 113 76-206 8-144 (457)
170 PRK14618 NAD(P)H-dependent gly 96.8 0.0028 6.2E-08 56.4 6.0 72 81-153 5-105 (328)
171 PRK12491 pyrroline-5-carboxyla 96.7 0.0035 7.5E-08 54.8 6.1 72 81-153 3-98 (272)
172 PRK06199 ornithine cyclodeamin 96.7 0.0042 9E-08 57.0 6.9 75 79-154 154-261 (379)
173 PTZ00317 NADP-dependent malic 96.7 0.0051 1.1E-07 58.8 7.4 94 61-156 278-419 (559)
174 TIGR00872 gnd_rel 6-phosphoglu 96.7 0.0033 7.1E-08 55.5 5.6 72 82-154 2-95 (298)
175 PRK06398 aldose dehydrogenase; 96.6 0.0067 1.5E-07 51.6 7.2 37 77-113 3-39 (258)
176 TIGR00465 ilvC ketol-acid redu 96.6 0.0056 1.2E-07 54.8 6.8 56 78-134 1-70 (314)
177 PRK00421 murC UDP-N-acetylmura 96.6 0.0043 9.2E-08 57.8 6.3 123 78-209 5-132 (461)
178 PRK06949 short chain dehydroge 96.6 0.004 8.8E-08 52.4 5.6 38 76-113 5-42 (258)
179 PRK09599 6-phosphogluconate de 96.6 0.0066 1.4E-07 53.5 7.1 72 82-154 2-96 (301)
180 PRK08293 3-hydroxybutyryl-CoA 96.6 0.0063 1.4E-07 53.2 6.8 71 81-152 4-120 (287)
181 TIGR02354 thiF_fam2 thiamine b 96.6 0.0047 1E-07 51.7 5.6 35 77-112 18-53 (200)
182 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.0074 1.6E-07 51.5 7.0 53 59-112 6-63 (227)
183 COG0078 ArgF Ornithine carbamo 96.6 0.015 3.2E-07 51.7 8.9 78 55-132 128-230 (310)
184 PLN02688 pyrroline-5-carboxyla 96.6 0.0067 1.4E-07 52.1 6.6 68 82-151 2-94 (266)
185 TIGR02356 adenyl_thiF thiazole 96.6 0.0045 9.7E-08 51.7 5.4 35 77-112 18-53 (202)
186 PRK08507 prephenate dehydrogen 96.6 0.0073 1.6E-07 52.5 6.9 70 82-155 2-94 (275)
187 PRK08223 hypothetical protein; 96.5 0.006 1.3E-07 54.0 6.2 34 77-111 24-58 (287)
188 PRK01713 ornithine carbamoyltr 96.5 0.029 6.2E-07 50.7 10.7 74 57-130 132-232 (334)
189 PRK00094 gpsA NAD(P)H-dependen 96.5 0.0077 1.7E-07 53.0 6.9 70 82-152 3-105 (325)
190 PRK12367 short chain dehydroge 96.5 0.0073 1.6E-07 51.6 6.5 57 77-133 11-89 (245)
191 PRK06523 short chain dehydroge 96.5 0.0086 1.9E-07 50.6 6.9 38 76-113 5-42 (260)
192 PRK06550 fabG 3-ketoacyl-(acyl 96.5 0.0081 1.8E-07 49.9 6.5 57 77-133 2-77 (235)
193 TIGR02355 moeB molybdopterin s 96.5 0.0049 1.1E-07 53.0 5.2 34 78-112 22-56 (240)
194 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.009 1.9E-07 50.7 6.7 46 67-113 10-56 (217)
195 TIGR03026 NDP-sugDHase nucleot 96.5 0.0091 2E-07 54.9 7.3 71 82-153 2-121 (411)
196 PRK12475 thiamine/molybdopteri 96.4 0.0059 1.3E-07 55.1 5.7 35 77-112 21-56 (338)
197 PRK00141 murD UDP-N-acetylmura 96.4 0.0073 1.6E-07 56.7 6.6 127 77-208 12-145 (473)
198 PLN02586 probable cinnamyl alc 96.4 0.015 3.2E-07 52.3 8.3 94 60-154 164-280 (360)
199 PRK09072 short chain dehydroge 96.4 0.0061 1.3E-07 51.8 5.5 37 77-113 2-38 (263)
200 cd00757 ThiF_MoeB_HesA_family 96.4 0.0036 7.8E-08 53.1 4.0 33 77-110 18-51 (228)
201 PRK01710 murD UDP-N-acetylmura 96.4 0.0099 2.1E-07 55.4 7.0 35 78-113 12-46 (458)
202 PRK07523 gluconate 5-dehydroge 96.4 0.0043 9.3E-08 52.3 4.2 37 77-113 7-43 (255)
203 PRK00066 ldh L-lactate dehydro 96.3 0.013 2.9E-07 52.3 7.4 57 78-135 4-85 (315)
204 PLN02712 arogenate dehydrogena 96.3 0.0097 2.1E-07 58.4 7.0 76 78-154 50-145 (667)
205 PRK08862 short chain dehydroge 96.3 0.0052 1.1E-07 51.8 4.4 38 77-114 2-39 (227)
206 PRK02102 ornithine carbamoyltr 96.3 0.047 1E-06 49.3 10.8 73 58-130 133-231 (331)
207 PLN02342 ornithine carbamoyltr 96.3 0.049 1.1E-06 49.5 10.9 73 58-131 172-267 (348)
208 PRK03369 murD UDP-N-acetylmura 96.3 0.0089 1.9E-07 56.3 6.4 35 78-113 10-44 (488)
209 PF10727 Rossmann-like: Rossma 96.3 0.0055 1.2E-07 47.8 4.2 72 80-152 10-104 (127)
210 COG0569 TrkA K+ transport syst 96.3 0.0073 1.6E-07 51.4 5.3 52 81-133 1-76 (225)
211 cd05313 NAD_bind_2_Glu_DH NAD( 96.3 0.014 2.9E-07 50.9 7.0 55 58-113 12-71 (254)
212 PRK07424 bifunctional sterol d 96.3 0.011 2.5E-07 54.6 6.9 39 75-113 173-211 (406)
213 PLN02819 lysine-ketoglutarate 96.3 0.0042 9.1E-08 63.5 4.3 116 79-210 568-722 (1042)
214 TIGR01724 hmd_rel H2-forming N 96.3 0.014 3E-07 52.5 7.1 63 93-155 32-119 (341)
215 PRK04284 ornithine carbamoyltr 96.3 0.05 1.1E-06 49.1 10.8 73 58-130 132-231 (332)
216 TIGR00670 asp_carb_tr aspartat 96.3 0.029 6.4E-07 49.9 9.1 104 11-130 96-223 (301)
217 PF03435 Saccharop_dh: Sacchar 96.3 0.0033 7.2E-08 57.1 3.2 111 83-210 1-141 (386)
218 PRK00856 pyrB aspartate carbam 96.3 0.029 6.2E-07 50.1 9.1 74 57-131 133-221 (305)
219 cd00650 LDH_MDH_like NAD-depen 96.3 0.012 2.6E-07 50.9 6.5 53 83-135 1-82 (263)
220 PRK05690 molybdopterin biosynt 96.3 0.0084 1.8E-07 51.7 5.5 34 77-111 29-63 (245)
221 PRK05866 short chain dehydroge 96.3 0.01 2.2E-07 51.8 6.1 40 74-113 34-73 (293)
222 PTZ00117 malate dehydrogenase; 96.3 0.018 3.9E-07 51.5 7.7 56 78-135 3-85 (319)
223 PRK12828 short chain dehydroge 96.2 0.0074 1.6E-07 49.8 4.9 38 77-114 4-41 (239)
224 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.0064 1.4E-07 50.2 4.5 53 81-134 1-87 (185)
225 PRK14804 ornithine carbamoyltr 96.2 0.033 7.1E-07 49.8 9.3 73 58-130 129-225 (311)
226 PRK08085 gluconate 5-dehydroge 96.2 0.006 1.3E-07 51.4 4.3 37 77-113 6-42 (254)
227 cd01492 Aos1_SUMO Ubiquitin ac 96.2 0.03 6.5E-07 46.7 8.4 36 77-113 18-54 (197)
228 PRK13814 pyrB aspartate carbam 96.2 0.033 7.1E-07 49.8 9.1 106 10-129 101-223 (310)
229 PRK06124 gluconate 5-dehydroge 96.2 0.0061 1.3E-07 51.4 4.3 38 76-113 7-44 (256)
230 PRK07819 3-hydroxybutyryl-CoA 96.2 0.014 3.1E-07 51.2 6.8 32 81-113 6-37 (286)
231 PRK03515 ornithine carbamoyltr 96.2 0.057 1.2E-06 48.8 10.7 74 57-130 131-232 (336)
232 PLN02545 3-hydroxybutyryl-CoA 96.2 0.0091 2E-07 52.3 5.5 73 81-154 5-122 (295)
233 PRK06130 3-hydroxybutyryl-CoA 96.2 0.014 3E-07 51.5 6.6 53 81-134 5-90 (311)
234 TIGR01832 kduD 2-deoxy-D-gluco 96.2 0.01 2.2E-07 49.7 5.4 37 77-113 2-38 (248)
235 COG0240 GpsA Glycerol-3-phosph 96.2 0.015 3.3E-07 52.3 6.8 71 81-152 2-105 (329)
236 PRK06171 sorbitol-6-phosphate 96.2 0.019 4.1E-07 48.7 7.2 37 77-113 6-42 (266)
237 PRK07231 fabG 3-ketoacyl-(acyl 96.2 0.0071 1.5E-07 50.5 4.4 38 77-114 2-39 (251)
238 PRK08339 short chain dehydroge 96.2 0.0061 1.3E-07 52.2 4.1 38 76-113 4-41 (263)
239 PRK06035 3-hydroxyacyl-CoA deh 96.2 0.0099 2.1E-07 52.0 5.5 32 81-113 4-35 (291)
240 PRK06172 short chain dehydroge 96.1 0.007 1.5E-07 50.9 4.3 37 77-113 4-40 (253)
241 PRK07066 3-hydroxybutyryl-CoA 96.1 0.018 3.9E-07 51.7 7.1 52 81-133 8-93 (321)
242 PTZ00082 L-lactate dehydrogena 96.1 0.022 4.8E-07 51.0 7.6 56 78-135 4-86 (321)
243 PRK08762 molybdopterin biosynt 96.1 0.0097 2.1E-07 54.3 5.3 35 77-112 132-167 (376)
244 PRK07062 short chain dehydroge 96.1 0.0085 1.8E-07 50.8 4.6 38 76-113 4-41 (265)
245 PRK08644 thiamine biosynthesis 96.1 0.013 2.7E-07 49.5 5.6 35 77-112 25-60 (212)
246 PF00899 ThiF: ThiF family; I 96.1 0.0079 1.7E-07 46.6 4.1 33 80-113 2-35 (135)
247 PLN02858 fructose-bisphosphate 96.1 0.012 2.6E-07 62.1 6.5 76 79-155 3-101 (1378)
248 PRK05867 short chain dehydroge 96.1 0.0077 1.7E-07 50.8 4.2 37 77-113 6-42 (253)
249 PRK14805 ornithine carbamoyltr 96.1 0.071 1.5E-06 47.5 10.5 104 11-131 94-222 (302)
250 CHL00194 ycf39 Ycf39; Provisio 96.1 0.015 3.2E-07 51.3 6.2 51 82-132 2-73 (317)
251 PLN00141 Tic62-NAD(P)-related 96.1 0.016 3.5E-07 49.1 6.2 37 77-113 14-50 (251)
252 PRK12562 ornithine carbamoyltr 96.1 0.083 1.8E-06 47.8 11.0 74 58-131 132-233 (334)
253 PLN02477 glutamate dehydrogena 96.0 0.019 4.1E-07 53.3 6.9 53 60-113 182-239 (410)
254 PRK05717 oxidoreductase; Valid 96.0 0.0096 2.1E-07 50.3 4.7 39 75-113 5-43 (255)
255 TIGR01915 npdG NADPH-dependent 96.0 0.021 4.6E-07 47.9 6.8 68 82-151 2-100 (219)
256 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.017 3.7E-07 51.1 6.4 53 81-134 3-93 (308)
257 PRK07063 short chain dehydroge 96.0 0.0086 1.9E-07 50.7 4.4 37 77-113 4-40 (260)
258 PRK14874 aspartate-semialdehyd 96.0 0.0084 1.8E-07 53.9 4.5 77 80-156 1-98 (334)
259 PRK08265 short chain dehydroge 96.0 0.011 2.3E-07 50.4 4.9 37 77-113 3-39 (261)
260 KOG1198 Zinc-binding oxidoredu 96.0 0.052 1.1E-06 49.2 9.6 78 58-135 130-237 (347)
261 PTZ00142 6-phosphogluconate de 96.0 0.016 3.6E-07 54.5 6.6 73 81-154 2-103 (470)
262 PRK07890 short chain dehydroge 96.0 0.0079 1.7E-07 50.6 4.0 36 78-113 3-38 (258)
263 PRK01368 murD UDP-N-acetylmura 96.0 0.017 3.6E-07 54.1 6.5 123 79-209 5-129 (454)
264 TIGR02825 B4_12hDH leukotriene 96.0 0.025 5.5E-07 49.5 7.3 87 67-153 126-238 (325)
265 PRK06138 short chain dehydroge 96.0 0.0087 1.9E-07 50.0 4.2 37 77-113 2-38 (252)
266 PRK07688 thiamine/molybdopteri 96.0 0.014 2.9E-07 52.8 5.7 35 77-112 21-56 (339)
267 PRK07530 3-hydroxybutyryl-CoA 96.0 0.013 2.9E-07 51.2 5.5 32 81-113 5-36 (292)
268 PRK06179 short chain dehydroge 96.0 0.011 2.3E-07 50.3 4.8 35 79-113 3-37 (270)
269 TIGR03325 BphB_TodD cis-2,3-di 96.0 0.012 2.7E-07 49.9 5.1 37 77-113 2-38 (262)
270 PRK09880 L-idonate 5-dehydroge 96.0 0.035 7.6E-07 49.3 8.2 85 68-154 159-268 (343)
271 PLN02350 phosphogluconate dehy 96.0 0.017 3.6E-07 54.8 6.3 73 82-155 8-110 (493)
272 PRK08628 short chain dehydroge 96.0 0.013 2.9E-07 49.3 5.3 39 75-113 2-40 (258)
273 PRK06182 short chain dehydroge 96.0 0.016 3.5E-07 49.5 5.8 35 79-113 2-36 (273)
274 PRK05597 molybdopterin biosynt 96.0 0.014 3.1E-07 53.0 5.7 35 77-112 25-60 (355)
275 PRK07097 gluconate 5-dehydroge 96.0 0.01 2.2E-07 50.5 4.5 39 75-113 5-43 (265)
276 PLN02986 cinnamyl-alcohol dehy 95.9 0.03 6.5E-07 49.1 7.5 36 78-113 3-38 (322)
277 PRK05600 thiamine biosynthesis 95.9 0.015 3.1E-07 53.2 5.7 35 77-112 38-73 (370)
278 PRK12829 short chain dehydroge 95.9 0.013 2.8E-07 49.4 5.0 37 77-113 8-44 (264)
279 PF05368 NmrA: NmrA-like famil 95.9 0.014 3.1E-07 48.8 5.3 52 83-134 1-75 (233)
280 PRK06057 short chain dehydroge 95.9 0.011 2.3E-07 50.0 4.5 36 78-113 5-40 (255)
281 PRK06935 2-deoxy-D-gluconate 3 95.9 0.018 3.9E-07 48.7 5.9 38 76-113 11-48 (258)
282 PRK06841 short chain dehydroge 95.9 0.017 3.6E-07 48.6 5.6 38 76-113 11-48 (255)
283 PLN02989 cinnamyl-alcohol dehy 95.9 0.026 5.6E-07 49.5 7.0 34 79-112 4-37 (325)
284 PRK02255 putrescine carbamoylt 95.9 0.052 1.1E-06 49.1 9.0 73 58-130 129-229 (338)
285 TIGR00873 gnd 6-phosphoglucona 95.9 0.011 2.4E-07 55.7 4.7 71 82-153 1-99 (467)
286 COG0771 MurD UDP-N-acetylmuram 95.9 0.022 4.7E-07 53.4 6.7 128 78-210 5-136 (448)
287 PRK08220 2,3-dihydroxybenzoate 95.9 0.025 5.4E-07 47.3 6.5 38 76-113 4-41 (252)
288 PRK14031 glutamate dehydrogena 95.9 0.023 5E-07 53.2 6.7 52 59-111 203-259 (444)
289 TIGR03589 PseB UDP-N-acetylglu 95.9 0.017 3.6E-07 51.2 5.7 56 78-133 2-84 (324)
290 PRK09186 flagellin modificatio 95.9 0.012 2.7E-07 49.3 4.6 36 78-113 2-37 (256)
291 PRK09242 tropinone reductase; 95.8 0.01 2.2E-07 50.1 4.0 38 76-113 5-42 (257)
292 TIGR03366 HpnZ_proposed putati 95.8 0.027 5.9E-07 48.6 6.8 92 61-154 103-220 (280)
293 PRK06476 pyrroline-5-carboxyla 95.8 0.016 3.6E-07 49.7 5.4 70 82-152 2-93 (258)
294 KOG0023 Alcohol dehydrogenase, 95.8 0.014 3.1E-07 52.3 4.9 68 62-131 165-234 (360)
295 PRK05225 ketol-acid reductoiso 95.8 0.01 2.3E-07 55.6 4.2 55 78-133 34-107 (487)
296 PRK01390 murD UDP-N-acetylmura 95.8 0.023 5.1E-07 52.8 6.6 35 78-113 7-41 (460)
297 PRK05854 short chain dehydroge 95.8 0.011 2.4E-07 52.1 4.2 38 76-113 10-47 (313)
298 TIGR00658 orni_carb_tr ornithi 95.8 0.12 2.5E-06 46.1 10.7 72 58-130 126-223 (304)
299 PRK02006 murD UDP-N-acetylmura 95.8 0.029 6.2E-07 52.9 7.2 35 78-113 5-39 (498)
300 PLN02514 cinnamyl-alcohol dehy 95.8 0.035 7.7E-07 49.7 7.5 92 62-154 163-277 (357)
301 PLN02858 fructose-bisphosphate 95.8 0.018 3.9E-07 60.7 6.3 74 80-154 324-420 (1378)
302 PRK05872 short chain dehydroge 95.8 0.012 2.7E-07 51.2 4.4 38 76-113 5-42 (296)
303 PRK11891 aspartate carbamoyltr 95.8 0.062 1.3E-06 50.1 9.2 76 57-132 214-317 (429)
304 PRK07478 short chain dehydroge 95.8 0.013 2.7E-07 49.5 4.3 37 77-113 3-39 (254)
305 PRK07680 late competence prote 95.8 0.017 3.6E-07 50.1 5.2 71 82-153 2-97 (273)
306 PF01113 DapB_N: Dihydrodipico 95.8 0.033 7.1E-07 42.9 6.3 50 82-131 2-75 (124)
307 PRK06463 fabG 3-ketoacyl-(acyl 95.8 0.021 4.7E-07 48.1 5.7 36 77-112 4-39 (255)
308 PLN02662 cinnamyl-alcohol dehy 95.8 0.036 7.9E-07 48.2 7.3 34 79-112 3-36 (322)
309 cd08294 leukotriene_B4_DH_like 95.8 0.041 8.8E-07 47.8 7.6 93 61-153 125-242 (329)
310 PRK07634 pyrroline-5-carboxyla 95.7 0.028 6.2E-07 47.5 6.4 55 79-134 3-77 (245)
311 PRK08213 gluconate 5-dehydroge 95.7 0.016 3.5E-07 49.0 4.8 38 76-113 8-45 (259)
312 PRK08703 short chain dehydroge 95.7 0.015 3.3E-07 48.5 4.6 38 77-114 3-40 (239)
313 PRK07060 short chain dehydroge 95.7 0.018 3.9E-07 47.9 5.0 38 76-113 5-42 (245)
314 PRK04690 murD UDP-N-acetylmura 95.7 0.029 6.4E-07 52.6 6.8 126 78-209 6-140 (468)
315 PRK08277 D-mannonate oxidoredu 95.7 0.013 2.9E-07 50.1 4.2 38 76-113 6-43 (278)
316 PRK07825 short chain dehydroge 95.7 0.014 3.1E-07 49.7 4.4 37 77-113 2-38 (273)
317 PRK13394 3-hydroxybutyrate deh 95.7 0.016 3.5E-07 48.7 4.6 37 77-113 4-40 (262)
318 PRK08416 7-alpha-hydroxysteroi 95.7 0.019 4.2E-07 48.7 5.1 37 76-112 4-40 (260)
319 PRK07035 short chain dehydroge 95.7 0.014 3E-07 49.1 4.2 38 76-113 4-41 (252)
320 COG2910 Putative NADH-flavin r 95.7 0.034 7.5E-07 46.4 6.3 54 81-134 1-73 (211)
321 PRK06194 hypothetical protein; 95.7 0.016 3.5E-07 49.7 4.7 37 77-113 3-39 (287)
322 cd05188 MDR Medium chain reduc 95.7 0.083 1.8E-06 44.0 8.9 94 61-155 116-235 (271)
323 PRK06200 2,3-dihydroxy-2,3-dih 95.7 0.015 3.2E-07 49.3 4.4 36 78-113 4-39 (263)
324 TIGR01202 bchC 2-desacetyl-2-h 95.6 0.044 9.4E-07 48.1 7.4 76 78-154 143-233 (308)
325 PRK12826 3-ketoacyl-(acyl-carr 95.6 0.017 3.6E-07 48.1 4.5 36 78-113 4-39 (251)
326 PRK04308 murD UDP-N-acetylmura 95.6 0.038 8.2E-07 51.2 7.3 124 78-209 3-135 (445)
327 PRK07531 bifunctional 3-hydrox 95.6 0.032 6.9E-07 52.8 6.9 53 81-134 5-91 (495)
328 PRK05876 short chain dehydroge 95.6 0.014 3.1E-07 50.3 4.1 37 77-113 3-39 (275)
329 PRK06125 short chain dehydroge 95.6 0.015 3.3E-07 49.2 4.2 37 77-113 4-40 (259)
330 PRK07856 short chain dehydroge 95.6 0.026 5.6E-07 47.5 5.6 37 77-113 3-39 (252)
331 cd08293 PTGR2 Prostaglandin re 95.6 0.043 9.4E-07 48.2 7.3 74 80-153 155-255 (345)
332 PRK06196 oxidoreductase; Provi 95.6 0.017 3.6E-07 50.8 4.6 39 75-113 21-59 (315)
333 PRK07814 short chain dehydroge 95.6 0.016 3.5E-07 49.3 4.3 37 77-113 7-43 (263)
334 PRK07774 short chain dehydroge 95.6 0.023 5E-07 47.5 5.2 37 77-113 3-39 (250)
335 PRK06500 short chain dehydroge 95.6 0.016 3.5E-07 48.3 4.3 36 78-113 4-39 (249)
336 PLN02896 cinnamyl-alcohol dehy 95.6 0.03 6.4E-07 49.9 6.2 59 75-133 5-89 (353)
337 PRK08264 short chain dehydroge 95.6 0.023 5E-07 47.2 5.2 38 77-114 3-41 (238)
338 PRK09291 short chain dehydroge 95.6 0.027 5.8E-07 47.3 5.6 34 80-113 2-35 (257)
339 TIGR03376 glycerol3P_DH glycer 95.6 0.03 6.5E-07 50.7 6.2 70 82-152 1-116 (342)
340 PLN02427 UDP-apiose/xylose syn 95.6 0.03 6.5E-07 50.6 6.3 60 74-133 8-96 (386)
341 PRK05786 fabG 3-ketoacyl-(acyl 95.6 0.021 4.6E-07 47.3 4.9 38 77-114 2-39 (238)
342 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.6 0.022 4.7E-07 54.2 5.5 32 81-113 6-37 (503)
343 PRK08589 short chain dehydroge 95.6 0.018 4E-07 49.3 4.6 37 77-113 3-39 (272)
344 PRK12481 2-deoxy-D-gluconate 3 95.6 0.024 5.1E-07 48.0 5.2 37 77-113 5-41 (251)
345 cd00704 MDH Malate dehydrogena 95.6 0.041 9E-07 49.3 7.0 54 82-135 2-88 (323)
346 TIGR01214 rmlD dTDP-4-dehydror 95.5 0.024 5.1E-07 48.6 5.2 52 82-133 1-60 (287)
347 PRK07067 sorbitol dehydrogenas 95.5 0.018 3.8E-07 48.7 4.3 36 78-113 4-39 (257)
348 PLN02968 Probable N-acetyl-gam 95.5 0.021 4.6E-07 52.4 5.1 76 79-156 37-138 (381)
349 PLN02214 cinnamoyl-CoA reducta 95.5 0.041 8.9E-07 49.1 6.8 55 78-132 8-90 (342)
350 cd01487 E1_ThiF_like E1_ThiF_l 95.5 0.039 8.4E-07 45.1 6.1 30 82-112 1-31 (174)
351 cd08230 glucose_DH Glucose deh 95.5 0.04 8.7E-07 49.1 6.7 77 78-155 171-272 (355)
352 PRK12429 3-hydroxybutyrate deh 95.5 0.02 4.3E-07 48.0 4.5 36 78-113 2-37 (258)
353 PRK08229 2-dehydropantoate 2-r 95.5 0.034 7.3E-07 49.5 6.1 70 81-152 3-107 (341)
354 TIGR03316 ygeW probable carbam 95.5 0.094 2E-06 47.8 9.0 75 57-131 144-253 (357)
355 COG0059 IlvC Ketol-acid reduct 95.5 0.037 8E-07 49.4 6.2 55 78-133 16-84 (338)
356 TIGR00521 coaBC_dfp phosphopan 95.5 0.055 1.2E-06 49.9 7.6 96 61-156 163-304 (390)
357 PRK07576 short chain dehydroge 95.5 0.024 5.2E-07 48.4 4.9 37 77-113 6-42 (264)
358 PLN02178 cinnamyl-alcohol dehy 95.5 0.069 1.5E-06 48.5 8.1 94 60-154 158-275 (375)
359 PLN02695 GDP-D-mannose-3',5'-e 95.5 0.034 7.4E-07 50.3 6.2 54 79-132 20-94 (370)
360 PRK05808 3-hydroxybutyryl-CoA 95.4 0.023 4.9E-07 49.5 4.8 32 81-113 4-35 (282)
361 PRK06139 short chain dehydroge 95.4 0.016 3.5E-07 51.8 3.9 37 77-113 4-40 (330)
362 PLN02527 aspartate carbamoyltr 95.4 0.1 2.2E-06 46.5 9.0 74 57-131 128-226 (306)
363 PRK08268 3-hydroxy-acyl-CoA de 95.4 0.026 5.6E-07 53.6 5.5 72 81-154 8-125 (507)
364 PLN00198 anthocyanidin reducta 95.4 0.047 1E-06 48.2 6.8 56 77-132 6-89 (338)
365 PRK15181 Vi polysaccharide bio 95.4 0.057 1.2E-06 48.2 7.4 38 75-112 10-47 (348)
366 PRK06114 short chain dehydroge 95.4 0.033 7.2E-07 47.0 5.6 38 76-113 4-41 (254)
367 cd05292 LDH_2 A subgroup of L- 95.4 0.048 1E-06 48.4 6.8 52 82-134 2-78 (308)
368 PRK06223 malate dehydrogenase; 95.4 0.058 1.3E-06 47.5 7.3 53 81-135 3-82 (307)
369 PRK15057 UDP-glucose 6-dehydro 95.4 0.084 1.8E-06 48.6 8.5 71 82-155 2-120 (388)
370 KOG0725 Reductases with broad 95.4 0.022 4.7E-07 49.8 4.5 39 76-114 4-42 (270)
371 PRK12939 short chain dehydroge 95.4 0.022 4.8E-07 47.5 4.3 37 77-113 4-40 (250)
372 PRK07411 hypothetical protein; 95.4 0.029 6.2E-07 51.6 5.4 33 78-111 36-69 (390)
373 PRK08936 glucose-1-dehydrogena 95.4 0.032 7E-07 47.2 5.4 37 77-113 4-40 (261)
374 PRK07878 molybdopterin biosynt 95.4 0.029 6.2E-07 51.6 5.4 33 78-111 40-73 (392)
375 PRK07666 fabG 3-ketoacyl-(acyl 95.4 0.022 4.7E-07 47.5 4.2 37 77-113 4-40 (239)
376 PRK06079 enoyl-(acyl carrier p 95.4 0.027 5.8E-07 47.8 4.8 36 78-113 5-42 (252)
377 PLN02778 3,5-epimerase/4-reduc 95.4 0.056 1.2E-06 47.5 7.0 54 80-133 9-67 (298)
378 PLN02657 3,8-divinyl protochlo 95.3 0.044 9.6E-07 50.1 6.5 39 75-113 55-93 (390)
379 PRK05875 short chain dehydroge 95.3 0.023 4.9E-07 48.5 4.4 37 77-113 4-40 (276)
380 PRK07326 short chain dehydroge 95.3 0.021 4.5E-07 47.4 4.0 36 78-113 4-39 (237)
381 PLN03209 translocon at the inn 95.3 0.037 7.9E-07 53.4 6.0 36 78-113 78-113 (576)
382 TIGR01850 argC N-acetyl-gamma- 95.3 0.04 8.6E-07 49.8 5.9 76 81-156 1-103 (346)
383 PRK07533 enoyl-(acyl carrier p 95.3 0.036 7.8E-07 47.2 5.4 37 76-113 6-45 (258)
384 PRK06728 aspartate-semialdehyd 95.3 0.16 3.4E-06 46.2 9.7 113 79-201 4-138 (347)
385 COG0604 Qor NADPH:quinone redu 95.3 0.043 9.3E-07 49.1 6.1 94 60-153 123-242 (326)
386 TIGR01763 MalateDH_bact malate 95.3 0.067 1.4E-06 47.5 7.3 53 81-135 2-81 (305)
387 PLN00106 malate dehydrogenase 95.2 0.087 1.9E-06 47.3 8.0 57 79-135 17-98 (323)
388 PRK06505 enoyl-(acyl carrier p 95.2 0.032 6.9E-07 48.1 5.0 36 78-113 5-42 (271)
389 PRK08217 fabG 3-ketoacyl-(acyl 95.2 0.025 5.4E-07 47.1 4.2 36 78-113 3-38 (253)
390 PRK12823 benD 1,6-dihydroxycyc 95.2 0.037 8.1E-07 46.6 5.3 37 77-113 5-41 (260)
391 PLN02253 xanthoxin dehydrogena 95.2 0.027 5.8E-07 48.2 4.5 37 77-113 15-51 (280)
392 PRK14806 bifunctional cyclohex 95.2 0.039 8.4E-07 54.4 6.2 73 81-154 4-99 (735)
393 PRK05653 fabG 3-ketoacyl-(acyl 95.2 0.041 8.9E-07 45.4 5.5 37 77-113 2-38 (246)
394 PRK08192 aspartate carbamoyltr 95.2 0.12 2.5E-06 46.9 8.7 74 58-131 133-234 (338)
395 PTZ00079 NADP-specific glutama 95.2 0.06 1.3E-06 50.5 7.0 53 60-113 213-270 (454)
396 PF13738 Pyr_redox_3: Pyridine 95.2 0.035 7.7E-07 45.0 5.0 37 77-114 164-200 (203)
397 PLN02383 aspartate semialdehyd 95.2 0.039 8.4E-07 50.0 5.7 78 79-156 6-104 (344)
398 PRK12742 oxidoreductase; Provi 95.2 0.038 8.2E-07 45.8 5.2 36 77-112 3-38 (237)
399 KOG1201 Hydroxysteroid 17-beta 95.2 0.065 1.4E-06 47.6 6.8 59 75-133 33-124 (300)
400 PRK06197 short chain dehydroge 95.2 0.021 4.5E-07 49.8 3.8 37 77-113 13-49 (306)
401 PRK05565 fabG 3-ketoacyl-(acyl 95.2 0.033 7.1E-07 46.2 4.8 37 77-113 2-39 (247)
402 PF08501 Shikimate_dh_N: Shiki 95.2 0.0067 1.5E-07 43.6 0.5 38 2-41 41-79 (83)
403 COG3288 PntA NAD/NADP transhyd 95.1 0.017 3.6E-07 51.6 3.0 90 65-155 139-284 (356)
404 PRK07200 aspartate/ornithine c 95.1 0.14 3E-06 47.3 9.1 75 57-131 161-270 (395)
405 cd08292 ETR_like_2 2-enoyl thi 95.1 0.12 2.6E-06 44.7 8.4 91 62-153 123-239 (324)
406 PRK05557 fabG 3-ketoacyl-(acyl 95.1 0.047 1E-06 45.1 5.6 37 77-113 2-38 (248)
407 TIGR03206 benzo_BadH 2-hydroxy 95.1 0.042 9.1E-07 45.8 5.2 36 78-113 1-36 (250)
408 TIGR01851 argC_other N-acetyl- 95.1 0.045 9.8E-07 49.0 5.6 76 81-156 2-84 (310)
409 smart00859 Semialdhyde_dh Semi 95.1 0.039 8.5E-07 41.8 4.6 75 82-156 1-103 (122)
410 cd08239 THR_DH_like L-threonin 95.1 0.069 1.5E-06 47.0 6.7 93 60-154 145-264 (339)
411 cd08281 liver_ADH_like1 Zinc-d 95.1 0.088 1.9E-06 47.3 7.5 76 78-154 190-292 (371)
412 TIGR03466 HpnA hopanoid-associ 95.1 0.06 1.3E-06 46.7 6.2 52 81-132 1-73 (328)
413 PRK14030 glutamate dehydrogena 95.0 0.065 1.4E-06 50.2 6.7 49 60-109 204-256 (445)
414 PRK05086 malate dehydrogenase; 95.0 0.085 1.8E-06 47.0 7.2 55 81-135 1-81 (312)
415 PRK12769 putative oxidoreducta 95.0 0.075 1.6E-06 51.8 7.4 33 79-112 326-358 (654)
416 TIGR01777 yfcH conserved hypot 95.0 0.066 1.4E-06 45.6 6.3 52 83-134 1-68 (292)
417 KOG1502 Flavonol reductase/cin 95.0 0.088 1.9E-06 47.4 7.2 54 79-132 5-87 (327)
418 PRK07792 fabG 3-ketoacyl-(acyl 95.0 0.047 1E-06 47.9 5.5 38 75-112 7-44 (306)
419 PRK08278 short chain dehydroge 95.0 0.049 1.1E-06 46.8 5.4 37 77-113 3-39 (273)
420 COG1004 Ugd Predicted UDP-gluc 95.0 0.25 5.5E-06 45.6 10.2 123 23-150 231-406 (414)
421 PRK06914 short chain dehydroge 95.0 0.046 9.9E-07 46.7 5.2 35 79-113 2-36 (280)
422 PRK06113 7-alpha-hydroxysteroi 95.0 0.033 7.1E-07 47.0 4.3 37 77-113 8-44 (255)
423 PRK06153 hypothetical protein; 95.0 0.034 7.3E-07 51.2 4.5 33 77-110 173-206 (393)
424 PRK08226 short chain dehydroge 95.0 0.049 1.1E-06 46.0 5.3 36 78-113 4-39 (263)
425 PRK07109 short chain dehydroge 94.9 0.03 6.5E-07 49.9 4.1 37 77-113 5-41 (334)
426 PRK12936 3-ketoacyl-(acyl-carr 94.9 0.038 8.1E-07 45.9 4.5 37 77-113 3-39 (245)
427 PRK08643 acetoin reductase; Va 94.9 0.036 7.7E-07 46.7 4.4 34 80-113 2-35 (256)
428 PRK09414 glutamate dehydrogena 94.9 0.073 1.6E-06 49.9 6.7 51 59-110 207-261 (445)
429 PRK08263 short chain dehydroge 94.9 0.068 1.5E-06 45.7 6.1 35 79-113 2-36 (275)
430 PF00070 Pyr_redox: Pyridine n 94.9 0.071 1.5E-06 37.4 5.2 32 82-114 1-32 (80)
431 PRK00779 ornithine carbamoyltr 94.9 0.14 2.9E-06 45.7 8.1 73 58-130 130-224 (304)
432 COG0039 Mdh Malate/lactate deh 94.9 0.089 1.9E-06 47.1 6.9 53 81-135 1-81 (313)
433 cd05282 ETR_like 2-enoyl thioe 94.9 0.14 3E-06 44.2 8.1 91 64-154 123-239 (323)
434 cd08253 zeta_crystallin Zeta-c 94.9 0.21 4.6E-06 42.5 9.1 88 67-154 132-245 (325)
435 PRK07806 short chain dehydroge 94.9 0.058 1.2E-06 45.1 5.4 36 78-113 4-39 (248)
436 PRK06720 hypothetical protein; 94.9 0.045 9.7E-07 44.4 4.6 40 76-115 12-51 (169)
437 PLN02730 enoyl-[acyl-carrier-p 94.9 0.059 1.3E-06 47.8 5.7 35 75-110 4-41 (303)
438 PRK12557 H(2)-dependent methyl 94.8 0.084 1.8E-06 47.8 6.7 61 93-153 32-117 (342)
439 PRK07677 short chain dehydroge 94.8 0.047 1E-06 46.0 4.9 34 80-113 1-34 (252)
440 PRK12779 putative bifunctional 94.8 0.062 1.3E-06 54.8 6.5 35 78-113 304-338 (944)
441 PRK06701 short chain dehydroge 94.8 0.055 1.2E-06 47.1 5.4 38 76-113 42-79 (290)
442 PRK05993 short chain dehydroge 94.8 0.047 1E-06 46.9 4.9 35 79-113 3-37 (277)
443 PRK08945 putative oxoacyl-(acy 94.8 0.033 7.1E-07 46.7 3.8 37 77-113 9-45 (247)
444 PRK12827 short chain dehydroge 94.8 0.057 1.2E-06 44.8 5.3 36 77-112 3-38 (249)
445 PRK08594 enoyl-(acyl carrier p 94.8 0.054 1.2E-06 46.2 5.2 35 77-112 4-41 (257)
446 PTZ00345 glycerol-3-phosphate 94.8 0.082 1.8E-06 48.3 6.7 71 81-152 12-129 (365)
447 PRK11863 N-acetyl-gamma-glutam 94.8 0.046 1E-06 49.0 4.9 76 81-156 3-85 (313)
448 COG2072 TrkA Predicted flavopr 94.8 0.044 9.5E-07 51.2 5.0 37 76-113 171-207 (443)
449 cd00300 LDH_like L-lactate deh 94.8 0.08 1.7E-06 46.8 6.4 51 83-135 1-78 (300)
450 PRK09135 pteridine reductase; 94.8 0.056 1.2E-06 44.9 5.2 36 78-113 4-39 (249)
451 TIGR03451 mycoS_dep_FDH mycoth 94.8 0.1 2.2E-06 46.5 7.2 76 78-154 175-278 (358)
452 KOG1494 NAD-dependent malate d 94.8 0.037 8.1E-07 48.9 4.1 57 78-135 26-108 (345)
453 PRK06483 dihydromonapterin red 94.8 0.054 1.2E-06 45.0 5.0 35 80-114 2-36 (236)
454 PRK00683 murD UDP-N-acetylmura 94.7 0.097 2.1E-06 48.2 7.0 55 79-134 2-70 (418)
455 PF00208 ELFV_dehydrog: Glutam 94.7 0.075 1.6E-06 45.9 5.9 50 60-110 7-61 (244)
456 PRK11880 pyrroline-5-carboxyla 94.7 0.088 1.9E-06 45.2 6.4 52 81-133 3-72 (267)
457 cd05293 LDH_1 A subgroup of L- 94.7 0.12 2.6E-06 46.2 7.3 52 81-134 4-82 (312)
458 PRK12937 short chain dehydroge 94.7 0.064 1.4E-06 44.5 5.3 36 77-112 2-37 (245)
459 PF00185 OTCace: Aspartate/orn 94.7 0.12 2.6E-06 41.6 6.6 75 79-153 1-121 (158)
460 PRK08303 short chain dehydroge 94.7 0.062 1.3E-06 47.4 5.4 38 76-113 4-41 (305)
461 cd01339 LDH-like_MDH L-lactate 94.6 0.095 2.1E-06 46.2 6.5 51 83-135 1-78 (300)
462 PRK12809 putative oxidoreducta 94.6 0.11 2.4E-06 50.6 7.4 34 79-113 309-342 (639)
463 TIGR01963 PHB_DH 3-hydroxybuty 94.6 0.047 1E-06 45.6 4.3 34 80-113 1-34 (255)
464 PLN03154 putative allyl alcoho 94.6 0.15 3.2E-06 45.6 7.8 47 66-112 145-191 (348)
465 cd01338 MDH_choloroplast_like 94.6 0.12 2.5E-06 46.4 7.0 55 81-135 3-90 (322)
466 PRK08267 short chain dehydroge 94.6 0.052 1.1E-06 45.8 4.6 33 81-113 2-34 (260)
467 PRK09620 hypothetical protein; 94.6 0.17 3.8E-06 43.2 7.7 59 78-136 1-100 (229)
468 PRK07791 short chain dehydroge 94.6 0.056 1.2E-06 46.9 4.8 35 78-112 4-38 (286)
469 PRK06444 prephenate dehydrogen 94.6 0.084 1.8E-06 44.2 5.6 59 82-154 2-61 (197)
470 PRK07985 oxidoreductase; Provi 94.6 0.065 1.4E-06 46.7 5.2 36 77-112 46-81 (294)
471 PRK06198 short chain dehydroge 94.6 0.06 1.3E-06 45.3 4.9 37 77-113 3-40 (260)
472 PRK08642 fabG 3-ketoacyl-(acyl 94.6 0.071 1.5E-06 44.5 5.3 35 78-112 3-37 (253)
473 PRK07577 short chain dehydroge 94.6 0.075 1.6E-06 43.9 5.3 35 79-113 2-36 (234)
474 PRK12384 sorbitol-6-phosphate 94.5 0.067 1.4E-06 45.1 5.1 34 80-113 2-35 (259)
475 PRK08040 putative semialdehyde 94.5 0.054 1.2E-06 48.9 4.7 78 79-156 3-101 (336)
476 PRK08328 hypothetical protein; 94.5 0.064 1.4E-06 45.7 5.0 36 77-113 24-60 (231)
477 PF04127 DFP: DNA / pantothena 94.5 0.11 2.3E-06 43.1 6.1 79 78-156 1-122 (185)
478 PRK07831 short chain dehydroge 94.5 0.063 1.4E-06 45.5 4.9 37 77-113 14-51 (262)
479 TIGR02622 CDP_4_6_dhtase CDP-g 94.5 0.069 1.5E-06 47.5 5.3 36 78-113 2-37 (349)
480 PRK06180 short chain dehydroge 94.5 0.059 1.3E-06 46.2 4.7 35 79-113 3-37 (277)
481 PRK15182 Vi polysaccharide bio 94.5 0.1 2.3E-06 48.5 6.6 74 80-155 6-123 (425)
482 PLN02780 ketoreductase/ oxidor 94.5 0.035 7.7E-07 49.3 3.4 37 79-115 52-88 (320)
483 PRK08993 2-deoxy-D-gluconate 3 94.5 0.076 1.6E-06 44.9 5.3 36 77-112 7-42 (253)
484 PRK06603 enoyl-(acyl carrier p 94.5 0.074 1.6E-06 45.4 5.2 37 77-113 5-43 (260)
485 PRK07453 protochlorophyllide o 94.5 0.05 1.1E-06 47.8 4.3 37 77-113 3-39 (322)
486 PLN02653 GDP-mannose 4,6-dehyd 94.4 0.074 1.6E-06 47.0 5.4 36 77-112 3-38 (340)
487 PRK11730 fadB multifunctional 94.4 0.091 2E-06 52.0 6.5 32 81-113 314-345 (715)
488 PRK08415 enoyl-(acyl carrier p 94.4 0.072 1.6E-06 46.1 5.2 35 78-113 3-40 (274)
489 PRK06128 oxidoreductase; Provi 94.4 0.074 1.6E-06 46.4 5.3 36 77-112 52-87 (300)
490 PRK07984 enoyl-(acyl carrier p 94.4 0.072 1.6E-06 45.8 5.1 36 78-113 4-41 (262)
491 cd05290 LDH_3 A subgroup of L- 94.4 0.12 2.6E-06 46.1 6.6 53 82-135 1-80 (307)
492 KOG0409 Predicted dehydrogenas 94.4 0.13 2.9E-06 45.8 6.8 57 78-135 33-103 (327)
493 PRK03806 murD UDP-N-acetylmura 94.4 0.14 2.9E-06 47.3 7.2 35 78-113 4-38 (438)
494 PRK08324 short chain dehydroge 94.4 0.084 1.8E-06 51.8 6.1 37 77-113 419-455 (681)
495 cd08295 double_bond_reductase_ 94.4 0.18 3.9E-06 44.4 7.7 88 66-153 138-252 (338)
496 PRK12744 short chain dehydroge 94.4 0.068 1.5E-06 45.1 4.8 35 77-111 5-39 (257)
497 PRK07454 short chain dehydroge 94.4 0.055 1.2E-06 45.1 4.2 35 79-113 5-39 (241)
498 PRK07370 enoyl-(acyl carrier p 94.4 0.081 1.7E-06 45.1 5.3 35 77-111 3-39 (258)
499 cd05294 LDH-like_MDH_nadp A la 94.4 0.15 3.3E-06 45.3 7.2 54 81-135 1-84 (309)
500 COG1090 Predicted nucleoside-d 94.4 0.1 2.2E-06 46.1 5.8 52 83-134 1-67 (297)
No 1
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-66 Score=445.17 Aligned_cols=197 Identities=51% Similarity=0.800 Sum_probs=189.8
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
+-.+|||+||+|||+|+|+++++++|+|+|||||||++|.|+|..+ +++|+||||.|++++|++|+++++||+++|||
T Consensus 86 D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVG 163 (283)
T COG0190 86 DPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVG 163 (283)
T ss_pred CCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence 4689999999999999999999999999999999999999999866 78899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..||||++.+|++.+|+||+||+.|+++.+.+++|||||+|+|+|++++.+|+++|++|||+|+|+.+ .
T Consensus 164 rS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~---------~ 234 (283)
T COG0190 164 RSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN---------D 234 (283)
T ss_pred CCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCcccc---------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976 1
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
++|+|||||++++++++++|||||||||||++|||+|+++++++..+.
T Consensus 235 ~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~~ 282 (283)
T COG0190 235 GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGE 282 (283)
T ss_pred CceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999987764
No 2
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.9e-65 Score=454.02 Aligned_cols=204 Identities=76% Similarity=1.205 Sum_probs=190.8
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
+-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||
T Consensus 142 D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~vvVIG 221 (345)
T PLN02897 142 DTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIG 221 (345)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence 35799999999999999999999999999999999999999998764447899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..||+|++++|.++||+||+||+.|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+|+.+ ++++++|
T Consensus 222 RS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~---~~~~~~g 298 (345)
T PLN02897 222 RSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFG 298 (345)
T ss_pred CCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccc---cccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 2222233
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
.+++|||||+++.++++++|||||||||||++|||+|+++++++|+.
T Consensus 299 ~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~~ 345 (345)
T PLN02897 299 YRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIFL 345 (345)
T ss_pred CeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999999999999999863
No 3
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=3.4e-65 Score=454.24 Aligned_cols=204 Identities=71% Similarity=1.123 Sum_probs=191.0
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||+
T Consensus 160 ~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l~GK~vvVIGR 239 (364)
T PLN02616 160 PSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGR 239 (364)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 56899999999999999999999999999999999999999987644578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.+++|+||+||++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+|+.+ ++++++|.
T Consensus 240 S~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~---~~~~~~g~ 316 (364)
T PLN02616 240 SNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---DASSPRGY 316 (364)
T ss_pred CccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEeccccccc---cccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 22222234
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++|||||++++++++++|||||||||||++|||+|++++++++.+.
T Consensus 317 klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~~ 363 (364)
T PLN02616 317 RLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHNF 363 (364)
T ss_pred eEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999998764
No 4
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1e-64 Score=441.93 Aligned_cols=195 Identities=44% Similarity=0.715 Sum_probs=186.1
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~GK~vvViGr 167 (288)
T PRK14171 89 NEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGR 167 (288)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 4689999999999999999999999999999999999999999763 478999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.+++|+||+||++|++|++.+++|||||+|+|+|++++++|+++|++|||+|+|+.+ ++
T Consensus 168 S~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~---------~g 238 (288)
T PRK14171 168 SNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS---------GN 238 (288)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++.+
T Consensus 239 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 283 (288)
T PRK14171 239 KIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283 (288)
T ss_pred CeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999998643
No 5
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-64 Score=440.48 Aligned_cols=196 Identities=48% Similarity=0.828 Sum_probs=187.9
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGr 165 (284)
T PRK14170 88 KTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGR 165 (284)
T ss_pred CCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 578999999999999999999999999999999999999999977 567999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.+++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+ ++
T Consensus 166 S~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~---------~g 236 (284)
T PRK14170 166 SNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDE---------NN 236 (284)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999854 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++++..
T Consensus 237 kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 283 (284)
T PRK14170 237 KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283 (284)
T ss_pred CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999988743
No 6
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=2.8e-64 Score=441.16 Aligned_cols=204 Identities=63% Similarity=1.034 Sum_probs=190.3
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||+
T Consensus 96 ~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGR 175 (299)
T PLN02516 96 PDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGR 175 (299)
T ss_pred CCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 57899999999999999999999999999999999999999987643578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||||++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+ +++..++.
T Consensus 176 S~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~---~~~~~~g~ 252 (299)
T PLN02516 176 SNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGY 252 (299)
T ss_pred CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccC---cccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 22211233
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++|+.+
T Consensus 253 kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~~ 299 (299)
T PLN02516 253 RLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFAQ 299 (299)
T ss_pred ceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999853
No 7
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-64 Score=439.58 Aligned_cols=199 Identities=44% Similarity=0.726 Sum_probs=186.8
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~vvViGr 165 (293)
T PRK14185 88 DDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGR 165 (293)
T ss_pred CCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 578999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||+|++++|.++ +|+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+.+ +++.
T Consensus 166 S~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~---~~~~ 242 (293)
T PRK14185 166 SNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVP---DATR 242 (293)
T ss_pred CccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCcccc---cccc
Confidence 999999999999998 799999999999999999999999999999999999999999999999999864 2222
Q ss_pred CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
++|.+++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus 243 ~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 290 (293)
T PRK14185 243 KSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290 (293)
T ss_pred cCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 223389999999999999999999999999999999999999998764
No 8
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.4e-64 Score=437.84 Aligned_cols=194 Identities=43% Similarity=0.677 Sum_probs=186.0
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 87 ~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 164 (282)
T PRK14169 87 PDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGR 164 (282)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.. ++
T Consensus 165 S~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~---------~g 235 (282)
T PRK14169 165 SNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGA---------DG 235 (282)
T ss_pred CccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++..
T Consensus 236 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 280 (282)
T PRK14169 236 KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA 280 (282)
T ss_pred CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999998754
No 9
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.7e-64 Score=438.24 Aligned_cols=196 Identities=46% Similarity=0.756 Sum_probs=188.3
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr 166 (284)
T PRK14190 89 PRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGR 166 (284)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 479999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+ .+
T Consensus 167 S~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~---------~g 237 (284)
T PRK14190 167 SNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLE---------NG 237 (284)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++|.+.
T Consensus 238 kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 284 (284)
T PRK14190 238 KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR 284 (284)
T ss_pred CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999998763
No 10
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.8e-64 Score=439.65 Aligned_cols=203 Identities=49% Similarity=0.796 Sum_probs=189.1
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|...++|+||||.|++++|++|+++++||+|+|||+
T Consensus 90 ~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 169 (297)
T PRK14168 90 DSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGR 169 (297)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 46899999999999999999999999999999999999999998754478999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||+|++++|.++ +|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+.. +.++
T Consensus 170 S~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~~ 246 (297)
T PRK14168 170 SNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVG---TNES 246 (297)
T ss_pred CCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCccC---cccc
Confidence 999999999999998 799999999999999999999999999999999999999999999999999853 1111
Q ss_pred CCC-CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 165 EYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 165 ~~~-~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
++ .+++|||||+++.++++++|||||||||||++|||+|+++++++|++.
T Consensus 247 -~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~ 297 (297)
T PRK14168 247 -TGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297 (297)
T ss_pred -CCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 12 249999999999999999999999999999999999999999999973
No 11
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.8e-64 Score=437.51 Aligned_cols=190 Identities=39% Similarity=0.669 Sum_probs=183.4
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.| .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr 166 (278)
T PRK14172 89 NNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGR 166 (278)
T ss_pred CCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999987 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+ +
T Consensus 167 S~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~----------g 236 (278)
T PRK14172 167 SNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN----------G 236 (278)
T ss_pred CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccC----------C
Confidence 999999999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~ 210 (216)
+++|||||++++++++++|||||||||||++|||+|++++++
T Consensus 237 kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 278 (278)
T PRK14172 237 KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278 (278)
T ss_pred ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999864
No 12
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.7e-64 Score=436.40 Aligned_cols=195 Identities=45% Similarity=0.705 Sum_probs=185.9
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 87 ~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGr 165 (282)
T PRK14166 87 DSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGA 165 (282)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 4789999999999999999999999999999999999999998763 468999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.+++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.. + +
T Consensus 166 S~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~--------~-g 236 (282)
T PRK14166 166 SNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE--------S-G 236 (282)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccC--------C-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 1 4
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus 237 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 281 (282)
T PRK14166 237 KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL 281 (282)
T ss_pred CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999998753
No 13
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.7e-64 Score=436.09 Aligned_cols=194 Identities=47% Similarity=0.737 Sum_probs=185.9
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCc-cCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~-~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.| ..+ |+||||.|++++|++|+++++||+|+|||
T Consensus 87 ~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk~vvViG 164 (282)
T PRK14182 87 PAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGKRALVVG 164 (282)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence 478999999999999999999999999999999999999999977 344 89999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..||+|++++|.+++|+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.. +
T Consensus 165 rS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~---------~ 235 (282)
T PRK14182 165 RSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLA---------D 235 (282)
T ss_pred CCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecC---------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999853 1
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
++++|||||++++++++++|||||||||||++|||+|+++++++|.
T Consensus 236 gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~ 281 (282)
T PRK14182 236 GKLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA 281 (282)
T ss_pred CCeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999885
No 14
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.4e-64 Score=437.58 Aligned_cols=200 Identities=43% Similarity=0.715 Sum_probs=187.5
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|...++|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 168 (294)
T PRK14187 89 DSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGR 168 (294)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 47899999999999999999999999999999999999999998754468999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.+++|+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+.+ +.. ..
T Consensus 169 S~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~---~~~---~~ 242 (294)
T PRK14187 169 SNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIE---EGG---VK 242 (294)
T ss_pred CccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccC---CCC---cc
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 100 02
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++..+
T Consensus 243 kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 288 (294)
T PRK14187 243 KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQKG 288 (294)
T ss_pred ceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999987543
No 15
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-63 Score=434.12 Aligned_cols=195 Identities=40% Similarity=0.653 Sum_probs=186.5
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
+-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.|. ..+|+||||.|++++|++|+++++||+|+|||
T Consensus 87 D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~vvViG 165 (282)
T PRK14180 87 DSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVG 165 (282)
T ss_pred CCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence 35789999999999999999999999999999999999999998763 37899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+
T Consensus 166 rS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~---------- 235 (282)
T PRK14180 166 ASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD---------- 235 (282)
T ss_pred CCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
++++|||||++++++++++|||||||||||++|||+|+++++++++
T Consensus 236 gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 281 (282)
T PRK14180 236 GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 281 (282)
T ss_pred CceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999998764
No 16
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.8e-63 Score=435.98 Aligned_cols=201 Identities=47% Similarity=0.727 Sum_probs=188.3
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 165 (297)
T PRK14167 88 EDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEGADVVVVGR 165 (297)
T ss_pred CCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 578999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||||++++|.++ +|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+.+ +++
T Consensus 166 S~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~---~~~- 241 (297)
T PRK14167 166 SDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD---ADT- 241 (297)
T ss_pred CcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccC---ccc-
Confidence 999999999999988 899999999999999999999999999999999999999999999999999853 111
Q ss_pred CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
.+|.+++|||||++++++++++|||||||||||++|||+|+++++++.++.
T Consensus 242 ~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 292 (297)
T PRK14167 242 EKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV 292 (297)
T ss_pred ccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 122389999999999999999999999999999999999999999987664
No 17
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.2e-63 Score=433.36 Aligned_cols=199 Identities=44% Similarity=0.699 Sum_probs=185.7
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 83 ~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 161 (287)
T PRK14181 83 PNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGR 161 (287)
T ss_pred CCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 4789999999999999999999999999999999999999999773 467999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||||++++|.++ +|+||+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+|+.. ++..
T Consensus 162 S~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~---~~~~ 238 (287)
T PRK14181 162 SNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP---AANP 238 (287)
T ss_pred CccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---cccC
Confidence 999999999999999 899999999999999999999999999999999999999999999999999853 1110
Q ss_pred CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
++.+++|||||+++.++++++|||||||||||++|||+|+++++++.
T Consensus 239 -~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 285 (287)
T PRK14181 239 -KGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRH 285 (287)
T ss_pred -CCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 12389999999999999999999999999999999999999999865
No 18
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.1e-63 Score=433.76 Aligned_cols=199 Identities=47% Similarity=0.711 Sum_probs=187.1
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.| ...|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGr 166 (297)
T PRK14186 89 ERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGR 166 (297)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999877 467999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++++++++|||||+|+|+|++++++|+++|++|||+|+++.+ +++ .+ +
T Consensus 167 S~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~-~~-g 241 (297)
T PRK14186 167 SILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLP---SSD-GK-T 241 (297)
T ss_pred CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---ccc-cC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 111 12 4
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++..+
T Consensus 242 kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~ 287 (297)
T PRK14186 242 RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287 (297)
T ss_pred ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999987654
No 19
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.8e-63 Score=430.69 Aligned_cols=194 Identities=46% Similarity=0.723 Sum_probs=185.7
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
+-++|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.| .++|+||||.|++++|++|+++++||+|+|||
T Consensus 87 D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViG 164 (281)
T PRK14183 87 NPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKDVCVVG 164 (281)
T ss_pred CCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEEC
Confidence 3578999999999999999999999999999999999999999977 67899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+ .
T Consensus 165 rS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~---------~ 235 (281)
T PRK14183 165 ASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTE---------D 235 (281)
T ss_pred CCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccC---------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999853 1
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
++++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus 236 gkl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~ 280 (281)
T PRK14183 236 GRLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKNR 280 (281)
T ss_pred CCeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999999999763
No 20
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.5e-63 Score=432.23 Aligned_cols=194 Identities=46% Similarity=0.687 Sum_probs=186.6
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr 165 (286)
T PRK14184 88 PDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGR 165 (286)
T ss_pred CcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 478999999999999999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh----CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQR----HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~----~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||+|++++|.+ ++|+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+
T Consensus 166 S~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~------- 238 (286)
T PRK14184 166 SNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTD------- 238 (286)
T ss_pred CccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccC-------
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
++++|||||++++++++++|||||||||||++|||+|+++++++..|
T Consensus 239 ---~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~ 285 (286)
T PRK14184 239 ---DGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERVG 285 (286)
T ss_pred ---CCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhC
Confidence 36999999999999999999999999999999999999999988766
No 21
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.7e-63 Score=430.69 Aligned_cols=190 Identities=42% Similarity=0.697 Sum_probs=183.1
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 90 ~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGr 167 (284)
T PRK14177 90 PNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGR 167 (284)
T ss_pred CCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 578999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+
T Consensus 168 S~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~------------- 234 (284)
T PRK14177 168 SPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP------------- 234 (284)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++.+
T Consensus 235 ~~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 279 (284)
T PRK14177 235 GNVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF 279 (284)
T ss_pred cccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999987643
No 22
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=9.8e-63 Score=429.02 Aligned_cols=194 Identities=45% Similarity=0.735 Sum_probs=184.6
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ ...|+||||.|++++|++|+++++||+++|||+
T Consensus 89 ~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr 166 (284)
T PRK14193 89 PACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGR 166 (284)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999876 567899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh--CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEY 166 (216)
Q Consensus 89 gg~vg~~~a~~L~~--~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~ 166 (216)
|..||+|++++|.+ ++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..
T Consensus 167 S~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~--------- 237 (284)
T PRK14193 167 GVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAG--------- 237 (284)
T ss_pred CCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccC---------
Confidence 99999999999998 7999999999999999999999999999999999999999999999999999853
Q ss_pred CCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 167 GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 167 ~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++++|||| ++++++++++|||||||||||++|||+|+++++++..|
T Consensus 238 ~gkl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (284)
T PRK14193 238 DGKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284 (284)
T ss_pred CCcEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHhhC
Confidence 148999999 88999999999999999999999999999999987654
No 23
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-62 Score=429.08 Aligned_cols=195 Identities=46% Similarity=0.735 Sum_probs=187.3
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.+ .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGr 166 (285)
T PRK14189 89 PKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGR 166 (285)
T ss_pred CCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 568999999999999999999999999999999999999999876 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|+.||+|++++|.++||+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.. ++
T Consensus 167 s~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~---------~g 237 (285)
T PRK14189 167 SNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDD---------AG 237 (285)
T ss_pred CCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999863 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++|||||++++++++++|||||||||||++|||+|++++++++..
T Consensus 238 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~ 283 (285)
T PRK14189 238 KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283 (285)
T ss_pred CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999998865
No 24
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-62 Score=427.14 Aligned_cols=195 Identities=47% Similarity=0.766 Sum_probs=187.2
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 90 ~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr 167 (285)
T PRK10792 90 PTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGA 167 (285)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 469999999999999999999999999999999999999999876 568999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+ ++
T Consensus 168 s~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~---------~g 238 (285)
T PRK10792 168 SNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLE---------DG 238 (285)
T ss_pred CcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEccccccc---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++|||||+.++++++++|||||||||||++|||+|+++++++|+.
T Consensus 239 k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (285)
T PRK10792 239 KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD 284 (285)
T ss_pred CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999974
No 25
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.3e-62 Score=427.29 Aligned_cols=195 Identities=45% Similarity=0.701 Sum_probs=183.7
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.| ...|+||||.|++++|++|+++++||+|+|||+
T Consensus 86 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr 163 (287)
T PRK14173 86 PEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGR 163 (287)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999977 467999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.. +. + +
T Consensus 164 S~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~---~~---~-g 236 (287)
T PRK14173 164 SNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVG---GN---G-G 236 (287)
T ss_pred CCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccc---CC---C-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999852 00 1 3
Q ss_pred e--EecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 R--LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~--l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+ ++|||| ++++++++++|||||||||||++|||+|++.++++..
T Consensus 237 k~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (287)
T PRK14173 237 RDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRR 282 (287)
T ss_pred ceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence 6 999999 6888999999999999999999999999999998754
No 26
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.7e-62 Score=426.47 Aligned_cols=192 Identities=42% Similarity=0.739 Sum_probs=184.5
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 95 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr 172 (287)
T PRK14176 95 KDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGH 172 (287)
T ss_pred CCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 478999999999999999999999999999999999999999977 568999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+.. +
T Consensus 173 s~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~----------g 242 (287)
T PRK14176 173 SNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE----------D 242 (287)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC----------C
Confidence 999999999999999999999999999999999999999999999999999999999999999999754 4
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
+++|||||+.++++++++|||||||||||++|||+|+++++++.
T Consensus 243 kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~ 286 (287)
T PRK14176 243 KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS 286 (287)
T ss_pred CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999998753
No 27
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-62 Score=425.89 Aligned_cols=194 Identities=45% Similarity=0.689 Sum_probs=185.9
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGr 165 (285)
T PRK14191 88 QNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGA 165 (285)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 458999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+ .+
T Consensus 166 s~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~---------~g 236 (285)
T PRK14191 166 SNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLN---------DG 236 (285)
T ss_pred CchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeeccccc---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus 237 klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~ 281 (285)
T PRK14191 237 RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQ 281 (285)
T ss_pred ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998754
No 28
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.7e-62 Score=423.71 Aligned_cols=195 Identities=45% Similarity=0.731 Sum_probs=187.3
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ .++|+||||.|++++|++|+++++||+++|||+
T Consensus 89 ~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~ 166 (284)
T PRK14179 89 PTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEGKHAVVIGR 166 (284)
T ss_pred CCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 478999999999999999999999999999999999999999976 678999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|+.||+|++.+|+++|++|++||++++++++.+++|||||+|+|.|++++++|+++|++|||+|+++.. + +
T Consensus 167 S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~--------~-g 237 (284)
T PRK14179 167 SNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDE--------N-G 237 (284)
T ss_pred CCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecC--------C-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 1 4
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
+++|||||+++.++++++|||||||||||++|||+|+++++++|.-
T Consensus 238 kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 283 (284)
T PRK14179 238 KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSLH 283 (284)
T ss_pred CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999974
No 29
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-61 Score=424.06 Aligned_cols=202 Identities=49% Similarity=0.729 Sum_probs=187.7
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|+..++|+||||.|++++|++|+++++||+|+|||+
T Consensus 88 ~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGr 167 (295)
T PRK14174 88 PDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGR 167 (295)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 46899999999999999999999999999999999999999998743478999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh----CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976 89 SNIVGLPTSLLLQR----HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC 164 (216)
Q Consensus 89 gg~vg~~~a~~L~~----~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~ 164 (216)
|..||+|++++|.+ ++++|++||+++.++++++++|||||+|+|+|++++++|+++|++|||+|+++.+ ++++
T Consensus 168 S~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~---~~~~ 244 (295)
T PRK14174 168 SNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIE---DPST 244 (295)
T ss_pred CCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeeccccc---cccc
Confidence 99999999999988 7899999999999999999999999999999999999999999999999999854 2222
Q ss_pred CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
++|.+++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus 245 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 293 (295)
T PRK14174 245 KSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVN 293 (295)
T ss_pred cCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 2234899999999999999999999999999999999999999998754
No 30
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.4e-61 Score=422.62 Aligned_cols=196 Identities=45% Similarity=0.759 Sum_probs=187.1
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.| .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGr 166 (286)
T PRK14175 89 DSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGR 166 (286)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 468999999999999999999999999999999999999999977 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
|+.||+|++++|.++||+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.. .+
T Consensus 167 s~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~---------~g 237 (286)
T PRK14175 167 SHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDE---------NG 237 (286)
T ss_pred CchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999854 14
Q ss_pred eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++..+.
T Consensus 238 kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~~~ 284 (286)
T PRK14175 238 KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGI 284 (286)
T ss_pred CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999886654
No 31
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.1e-61 Score=416.07 Aligned_cols=193 Identities=45% Similarity=0.683 Sum_probs=185.4
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG 87 (216)
+-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+ .++|+||||.|++++|++|+++++||+|+|+|
T Consensus 82 D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~V~ViG 159 (279)
T PRK14178 82 DPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKRAVVVG 159 (279)
T ss_pred CCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEEC
Confidence 4579999999999999999999999999999999999999999976 57899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976 88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG 167 (216)
Q Consensus 88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~ 167 (216)
+|..+|||++++|.++|++|++||++++++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+
T Consensus 160 rs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~---------- 229 (279)
T PRK14178 160 RSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVN---------- 229 (279)
T ss_pred CCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
++++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus 230 gkl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 274 (279)
T PRK14178 230 GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR 274 (279)
T ss_pred CCCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999999864
No 32
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.8e-60 Score=416.60 Aligned_cols=197 Identities=46% Similarity=0.799 Sum_probs=186.9
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.| .++|+||||.|++++|++|+++++||+|+|||+
T Consensus 90 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~ 167 (301)
T PRK14194 90 PSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGR 167 (301)
T ss_pred CCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 478999999999999999999999999999999999999999877 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC-
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG- 167 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~- 167 (216)
|+.+|+|++.+|.++|++|++|||+++++++.+++|||||+++|.|++++++|+++|++|||+++|+.. + ++
T Consensus 168 s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~---~----~g~ 240 (301)
T PRK14194 168 SNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRID---D----DGR 240 (301)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccC---C----CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 1 01
Q ss_pred CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
.+++|||||+++.++++++|||||||||||++|||+|+++++++|..
T Consensus 241 ~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~ 287 (301)
T PRK14194 241 SRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH 287 (301)
T ss_pred cceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999999999999999874
No 33
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.6e-60 Score=435.10 Aligned_cols=201 Identities=54% Similarity=0.862 Sum_probs=195.2
Q ss_pred CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 027976 10 MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS 89 (216)
Q Consensus 10 ~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g 89 (216)
-+|||+||+|||.|+|++.+.++|+|+||||||+..|.|+|..++.++.|+||||.||+++|+++++.+.||+++|+|||
T Consensus 92 tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v~Gk~aVVlGRS 171 (935)
T KOG4230|consen 92 TVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFVAGKNAVVLGRS 171 (935)
T ss_pred ccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCccccceeEEEecc
Confidence 48999999999999999999999999999999999999999888778999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCe
Q 027976 90 NIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR 169 (216)
Q Consensus 90 g~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~ 169 (216)
.+||.|++.+|...+++||+||++|+++.+.+.+|||||.|+|.|+|++.||+|||++|||+|+|+.. |+++.+|.|
T Consensus 172 ~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvp---D~~Kksg~k 248 (935)
T KOG4230|consen 172 KIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVP---DPSKKSGFK 248 (935)
T ss_pred cccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccC---CCCCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 777777889
Q ss_pred EecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 170 LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 170 l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
++|||||+++.+.++++|||||||||||+||||+|++.+++|++
T Consensus 249 lvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r 292 (935)
T KOG4230|consen 249 LVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQR 292 (935)
T ss_pred EeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 34
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-58 Score=404.28 Aligned_cols=200 Identities=48% Similarity=0.769 Sum_probs=185.2
Q ss_pred cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976 9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR 88 (216)
Q Consensus 9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~ 88 (216)
-++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.| ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus 89 ~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGr 166 (296)
T PRK14188 89 PAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGR 166 (296)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcC
Confidence 468999999999999999999999999999999999999999877 578999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976 89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY 168 (216)
Q Consensus 89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~ 168 (216)
++.+|+|+|.+|+++|++|++||+.|+++++.+++|||||+++|.|+.++.+|+++|++|||+|+++.+ ++...+|.
T Consensus 167 s~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~---~~~~~~g~ 243 (296)
T PRK14188 167 SNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIP---APEKGEGK 243 (296)
T ss_pred CcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccC---CccccCCC
Confidence 999999999999999999999998888999999999999999999999999999999999999999843 11101122
Q ss_pred -eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 169 -RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 169 -~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus 244 ~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 289 (296)
T PRK14188 244 TRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA 289 (296)
T ss_pred ceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999998753
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.1e-58 Score=399.97 Aligned_cols=200 Identities=39% Similarity=0.649 Sum_probs=189.2
Q ss_pred hhhcccc-CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCC
Q 027976 3 VQKMKFL-MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGK 81 (216)
Q Consensus 3 ~~~~~~~-~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk 81 (216)
+++++.. ++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.| .+.+.|||+.|++++|++++++++||
T Consensus 83 i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~Gk 160 (283)
T PRK14192 83 IEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGK 160 (283)
T ss_pred HHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCCCC
Confidence 5666665 79999999999999999999999999999999999999999876 57889999999999999999999999
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 161 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~ 161 (216)
+|+|+|+|+.+|||++++|.++||+|++|||+++++.+.+++|||||+|||.|++++.+|+++|++|+|++|+|.+
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~---- 236 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRD---- 236 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecC----
Confidence 9999999998899999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 162 ~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
.+++|||||++++++++++|||||||||||++|||+|+++++++.+|
T Consensus 237 ------~~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~~ 283 (283)
T PRK14192 237 ------GGGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG 283 (283)
T ss_pred ------CCCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence 26899999999999999999999999999999999999999998765
No 36
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.8e-57 Score=382.90 Aligned_cols=206 Identities=56% Similarity=0.880 Sum_probs=191.1
Q ss_pred ccccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEE
Q 027976 6 MKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVV 85 (216)
Q Consensus 6 ~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~V 85 (216)
-.+-.+|||+||+|+|+|++++.+++.++|+|||||+|+.|.|+|......+.|+||||.|++++|+++++.+.||+++|
T Consensus 92 N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~GKn~VV 171 (309)
T KOG0089|consen 92 NNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYGKNAVV 171 (309)
T ss_pred cCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecCceEEE
Confidence 34567999999999999999999999999999999999999999987655667999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHHHhC--------CCEEEEEeCCCC--CHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCC
Q 027976 86 IGRSNIVGLPTSLLLQRH--------HATVSIVHALTK--NPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 86 iG~gg~vg~~~a~~L~~~--------ga~Vti~~~~t~--~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~ 155 (216)
+|||.+||+|+|++|++. .|+|+++||.|+ +++.++++|||+|+|+|.|++++.+|+++|+.|+|+++|+
T Consensus 172 igRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vidvgin~ 251 (309)
T KOG0089|consen 172 IGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDVGINR 251 (309)
T ss_pred EcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEecCCCc
Confidence 999999999999999998 578999999985 4689999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 156 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 156 ~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
.+ |+.+..+.+|+||+||+++.++++++||||||+||||+||||+|+++++++.+.
T Consensus 252 v~---dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~ 307 (309)
T KOG0089|consen 252 VH---DPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL 307 (309)
T ss_pred cc---ccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 88 555444578999999999999999999999999999999999999999997653
No 37
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=100.00 E-value=2.5e-51 Score=331.56 Aligned_cols=160 Identities=54% Similarity=0.864 Sum_probs=138.4
Q ss_pred CccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhcc
Q 027976 43 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS 122 (216)
Q Consensus 43 ~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~ 122 (216)
||+|.|+|+.+ +++|+||||.|++++|++|+++++||+|+|||+|..||+|++.+|.++||+|++||++|+++++.++
T Consensus 1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~ 78 (160)
T PF02882_consen 1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR 78 (160)
T ss_dssp SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence 78999999987 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHH
Q 027976 123 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202 (216)
Q Consensus 123 ~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl 202 (216)
+|||||+|+|+|++++.+|+|+|++|||+|+++.+ .+++++||+||++++++++++|||||||||+|++|||
T Consensus 79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~--------~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~ 150 (160)
T PF02882_consen 79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVP--------GDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLM 150 (160)
T ss_dssp TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEET--------TTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHH
T ss_pred eccEEeeeeccccccccccccCCcEEEecCCcccc--------ccceeeecccHHHhhccceEEeeCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999872 1269999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027976 203 SNTLDSAKRA 212 (216)
Q Consensus 203 ~n~~~a~~~~ 212 (216)
+|+++++|++
T Consensus 151 ~N~v~a~~~~ 160 (160)
T PF02882_consen 151 KNLVKAAKRQ 160 (160)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999873
No 38
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=100.00 E-value=2e-45 Score=303.77 Aligned_cols=158 Identities=31% Similarity=0.441 Sum_probs=142.7
Q ss_pred cccccCccCccccccccccCC-------CCccCCCcHHHHHHHHHHhCC---------CCCCCeEEEEcCCchhHHHHHH
Q 027976 35 LEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSL 98 (216)
Q Consensus 35 p~KDvdg~~~~n~g~l~~~~~-------~~~~~p~Ta~g~~~~L~~~~~---------~l~gk~v~ViG~gg~vg~~~a~ 98 (216)
|+|||||+|+.|.|+|+.+.. ..+|+||||.|++++|++|++ +++||+|+|||+|..||+|+++
T Consensus 1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~ 80 (197)
T cd01079 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA 80 (197)
T ss_pred CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence 789999999999999987631 158999999999999999976 8999999999999999999999
Q ss_pred HHHhCCCEEEEE---------------eCCC--CC----HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCCc
Q 027976 99 LLQRHHATVSIV---------------HALT--KN----PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 99 ~L~~~ga~Vti~---------------~~~t--~~----l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~ 156 (216)
+|+++||+|++| |+.+ ++ +.+.+++|||||+|+|+|++ ++++|+++|++|||+|++.
T Consensus 81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~- 159 (197)
T cd01079 81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK- 159 (197)
T ss_pred HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence 999999999999 5555 35 78999999999999999999 9999999999999999863
Q ss_pred cCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976 157 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 157 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~ 213 (216)
|+| ++++++++++||| |||||++|||+|+++++++++
T Consensus 160 ----------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~~ 196 (197)
T cd01079 160 ----------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQH 196 (197)
T ss_pred ----------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHhc
Confidence 344 5778999999987 999999999999999998764
No 39
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=100.00 E-value=8.6e-42 Score=278.37 Aligned_cols=168 Identities=58% Similarity=0.918 Sum_probs=156.8
Q ss_pred cccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 35 LEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 35 p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
|+|||||++..|.++++.+ ...|+|||+.+++++++++..+++||+|+|+|+|+++|++++.+|.++|++|++++|++
T Consensus 1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 6899999999999999865 57899999999999999999999999999999999889999999999999999999999
Q ss_pred CCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCccc
Q 027976 115 KNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVG 194 (216)
Q Consensus 115 ~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvG 194 (216)
+++.+.+++||+||+|||+|+++++++++++.++||++.+|+. |.+ +++++||+||+.+++++..+||+|||+|
T Consensus 79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdv---d~~---~~~~~G~~d~~~~~~~~~~~~~~pggvg 152 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVG 152 (168)
T ss_pred hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCcc---ccc---CCCeeCCcCHHHHHhhccCcCCCCCcCh
Confidence 9999999999999999999999999999999999999999976 311 2489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027976 195 PMTVAMLLSNTLDSAK 210 (216)
Q Consensus 195 p~T~amLl~n~~~a~~ 210 (216)
|+|+++||+|++++++
T Consensus 153 p~t~a~l~~n~~~~~~ 168 (168)
T cd01080 153 PMTVAMLMKNTVEAAK 168 (168)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998864
No 40
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=100.00 E-value=2.6e-39 Score=256.39 Aligned_cols=136 Identities=37% Similarity=0.565 Sum_probs=128.0
Q ss_pred CCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCC
Q 027976 56 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 56 ~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~ 135 (216)
+++|+||||.|++++|++|+++++||+|+|+|+|..+|+|++.+|.++|++|++||++++++++++++|||||+|+|+++
T Consensus 4 ~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~ 83 (140)
T cd05212 4 TPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE 83 (140)
T ss_pred CCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 136 LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 136 ~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
+++++|+|+|++|+|++.++.. |+++.++++++||+||||||||++|||+|+++++
T Consensus 84 ~i~~~~ikpGa~Vidvg~~~~~------------------~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 84 KVPTEWIKPGATVINCSPTKLS------------------GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred ccCHHHcCCCCEEEEcCCCccc------------------chhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 8999999999999999987621 2567788999999999999999999999999875
No 41
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=99.96 E-value=1e-28 Score=216.53 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=150.1
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Cccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
.++++|.+++.|++||+||| ....++++.+++ ++.+.++ |.++ .|++. |+|+|+ .|+++.|++...++
T Consensus 55 ~~~~l~~~~~~G~nVTiP~K--~~v~~~~D~~~~~A~~iGAvNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~ 125 (284)
T PRK12549 55 LLDAAERMGFAGLNITHPCK--QAVIPHLDELSDDARALGAVNTVVFRDGRRI-GHNTDW------SGFAESFRRGLPDA 125 (284)
T ss_pred HHHHHHhcCCCEEEECcCCH--HHHHHHhccCCHHHHHhCCceEEEecCCEEE-EEcCCH------HHHHHHHHhhccCc
Confidence 36778888999999999999 556888888999 8888888 4444 45554 666666 99999999877788
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC----------------------CHHhhccCCCEEEEecCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK----------------------NPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~p~ 135 (216)
++|+|+|+|+||+ |++++..|+..|+ +|++++|+.. ++.+.++++|+||++|+..+
T Consensus 126 ~~k~vlIlGaGGa-araia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 126 SLERVVQLGAGGA-GAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred cCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 9999999999997 9999999999997 6999998631 12335678999999987532
Q ss_pred ------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 136 ------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 136 ------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
+++.++++++.+|+|+.|+|.+ |+|+ +.+ ++.|+ ++.+|.+ ||++|++.+|
T Consensus 205 ~~~~~~~~~~~~l~~~~~v~DivY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----ML~~Qa~~~f 261 (284)
T PRK12549 205 AKHPGLPLPAELLRPGLWVADIVYFPLE----------TELL-----RAA-RALGC--RTLDGGG-----MAVFQAVDAF 261 (284)
T ss_pred CCCCCCCCCHHHcCCCcEEEEeeeCCCC----------CHHH-----HHH-HHCCC--eEecCHH-----HHHHHHHHHH
Confidence 3666789999999999999977 6888 555 78899 5588988 9999999999
Q ss_pred HHHhCCC
Q 027976 210 KRAYGFT 216 (216)
Q Consensus 210 ~~~~~~~ 216 (216)
|+|+|++
T Consensus 262 ~~wtg~~ 268 (284)
T PRK12549 262 ELFTGRE 268 (284)
T ss_pred HHhcCCC
Confidence 9999963
No 42
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=99.95 E-value=3.4e-28 Score=213.68 Aligned_cols=182 Identities=20% Similarity=0.192 Sum_probs=147.7
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
.++.++.+++.|++||+||| ....++++.+++ +|.+.+++ .++ .|++. |+|+|+ .||++.|++.+.++
T Consensus 52 ~~~~l~~~~~~G~nVTiP~K--~~~~~~~D~l~~~A~~iGAVNTv~~~~g~l~-G~NTD~------~Gf~~~l~~~~~~~ 122 (288)
T PRK12749 52 AIEGLKALKMRGTGVSMPNK--QLACEYVDELTPAAKLVGAINTIVNDDGYLR-GYNTDG------TGHIRAIKESGFDI 122 (288)
T ss_pred HHHHHHhcCCCEEEECcCCH--HHHHHHhccCCHHHHHhCceeEEEccCCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence 35788888999999999999 566888899999 88888884 434 55664 666666 99999999999999
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC------CH-----------------------HhhccCCCEEE
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK------NP-----------------------EQITSEADIVI 128 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~------~l-----------------------~~~~~~ADIVI 128 (216)
++|+++|+|+||+ +|+++..|+..|+ +|+|++|+.. .+ .+.++++|+||
T Consensus 123 ~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288)
T PRK12749 123 KGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence 9999999999998 9999999999996 6999999731 01 11345689999
Q ss_pred EecCCCC-------c-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHH
Q 027976 129 AAAGVAN-------L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM 200 (216)
Q Consensus 129 satg~p~-------~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~am 200 (216)
|+|+..+ + .+.+.++++.+|+|+.|+|.+ |+|+ +.+ +++|+ ++.+|.+ |
T Consensus 202 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----M 258 (288)
T PRK12749 202 NGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM----------TKLL-----QQA-QQAGC--KTIDGYG-----M 258 (288)
T ss_pred ECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCcc----------CHHH-----HHH-HHCCC--eEECCHH-----H
Confidence 9998533 1 233557889999999999987 6888 555 78899 4578988 9
Q ss_pred HHHHHHHHHHHHhCCC
Q 027976 201 LLSNTLDSAKRAYGFT 216 (216)
Q Consensus 201 Ll~n~~~a~~~~~~~~ 216 (216)
|++|++.+||+|+|++
T Consensus 259 L~~Qa~~~f~lwtg~~ 274 (288)
T PRK12749 259 LLWQGAEQFTLWTGKD 274 (288)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999963
No 43
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=99.95 E-value=7.6e-28 Score=211.41 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=148.6
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
.++++|.+++.|++||+||| ....++++.++| ++.+.+++ .++ .|++. |+++|+ .|+++.|++++.++
T Consensus 54 ~~~~~~~~~~~G~nVT~P~K--~~v~~~ld~~~~~A~~iGavNTi~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~ 124 (289)
T PRK12548 54 AIKAIKTFNMRGANVTMPCK--SEAAKYMDELSPAARIIGAVNTIVNDDGKLT-GHITDG------LGFVRNLREHGVDV 124 (289)
T ss_pred HHHHHHHCCCCEEEECccCH--HHHHHHhhcCCHHHHHhCceeEEEeECCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence 36778888999999999999 666888999999 88888883 444 46664 766666 99999999888889
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC---C---C------------------------HHhhccCCCEE
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---K---N------------------------PEQITSEADIV 127 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---~---~------------------------l~~~~~~ADIV 127 (216)
++|+++|+|+||+ |++++..|+..|++ |++++|+. + + +.+.++++|+|
T Consensus 125 ~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 125 KGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 9999999999998 99999999999986 99999863 1 0 11234567999
Q ss_pred EEecCCCC-------cc-cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHH
Q 027976 128 IAAAGVAN-------LV-RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199 (216)
Q Consensus 128 Isatg~p~-------~i-~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~a 199 (216)
|++|+..+ ++ +.++++++.+|+|+.|+|.+ |+|+ +.+ ++.|+ ++.+|++
T Consensus 204 INaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~----- 260 (289)
T PRK12548 204 VNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKK----------TKLL-----EDA-EAAGC--KTVGGLG----- 260 (289)
T ss_pred EEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCC----------CHHH-----HHH-HHCCC--eeeCcHH-----
Confidence 99997532 23 44678889999999999987 6888 454 78898 5688988
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027976 200 MLLSNTLDSAKRAYGFT 216 (216)
Q Consensus 200 mLl~n~~~a~~~~~~~~ 216 (216)
||++|++.+||+|+|++
T Consensus 261 ML~~Qa~~~f~lwtg~~ 277 (289)
T PRK12548 261 MLLWQGAEAYKLYTGKD 277 (289)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999963
No 44
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=99.95 E-value=4.9e-28 Score=212.20 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=149.0
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc-c--cccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL-N--IGNLAMRGREPLFIPCTPKGCIELLIRSGVE 77 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~-n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~ 77 (216)
.++.+|.+++.|++||+||| .+..++++.++| ++.+.+++.+ + .|++. |+++|+ .||++.|++...+
T Consensus 54 ~~~~~~~~~~~G~nVT~P~K--~~~~~~lD~l~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~ 124 (283)
T PRK14027 54 LLDAALYLGFNGLNITHPYK--QAVLPLLDEVSEQATQLGAVNTVVIDATGHTT-GHNTDV------SGFGRGMEEGLPN 124 (283)
T ss_pred HHHHHHhcCCCEEEECccCH--HHHHHHhhhCCHHHHHhCCceEEEECCCCcEE-EEcCCH------HHHHHHHHhcCcC
Confidence 46778889999999999999 666889999999 9999888433 4 46664 767777 9999999876667
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---CH---------------------HhhccCCCEEEEecC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---NP---------------------EQITSEADIVIAAAG 132 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---~l---------------------~~~~~~ADIVIsatg 132 (216)
+++|+++|+|+||+ ||+++..|++.|+ +++|++|+.. .+ .+.+.++|+||++|+
T Consensus 125 ~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 125 AKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred cCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 89999999999998 9999999999997 6999998631 11 123456899999998
Q ss_pred CCC------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976 133 VAN------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 206 (216)
Q Consensus 133 ~p~------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~ 206 (216)
..+ +++.+.++++.+|+|+.|+|.+ |+|+ +.+ +++|+ ++-+|.+ ||++|++
T Consensus 204 ~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----MLv~Qa~ 260 (283)
T PRK14027 204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE----------TELL-----KAA-RALGC--ETLDGTR-----MAIHQAV 260 (283)
T ss_pred CCCCCCCCCCCCHHHcCCCcEEEEcccCCCC----------CHHH-----HHH-HHCCC--EEEccHH-----HHHHHHH
Confidence 543 2555668888999999999987 7888 454 78899 4578988 9999999
Q ss_pred HHHHHHhCCC
Q 027976 207 DSAKRAYGFT 216 (216)
Q Consensus 207 ~a~~~~~~~~ 216 (216)
.+|++|+|.+
T Consensus 261 ~~f~lw~G~~ 270 (283)
T PRK14027 261 DAFRLFTGLE 270 (283)
T ss_pred HHHHHHhCCC
Confidence 9999999963
No 45
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=99.95 E-value=9.5e-28 Score=209.94 Aligned_cols=181 Identities=23% Similarity=0.284 Sum_probs=149.9
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Ccccc--ccccccCCCCccCCCcHHHHHHHHHHhC--
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLNI--GNLAMRGREPLFIPCTPKGCIELLIRSG-- 75 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n~--g~l~~~~~~~~~~p~Ta~g~~~~L~~~~-- 75 (216)
.+++++++++.|.||++|+| ....++++.+++ ++-+.++ |.++. |++. |+|+|+ .|+.+.|++++
T Consensus 51 ~v~~~~~~g~~G~NVTiP~K--e~~~~~lD~l~~~A~~iGAVNTl~~~~~g~l~-G~NTD~------~G~~~~L~~~~~~ 121 (283)
T COG0169 51 AVSGIRALGFRGLNVTIPFK--EAALPLLDELSPRARLIGAVNTLVREDDGKLR-GYNTDG------IGFLRALKEFGLP 121 (283)
T ss_pred HHHHHHhcCCCeeEECCccH--HHHHHHHhcCCHHHHHhCCceEEEEccCCEEE-EEcCCH------HHHHHHHHhcCCC
Confidence 36788999999999999999 666889999999 8888888 56665 6775 777777 99999999977
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---CH----------------H--hhccCCCEEEEecCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---NP----------------E--QITSEADIVIAAAGV 133 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---~l----------------~--~~~~~ADIVIsatg~ 133 (216)
.+.+|++++|+|+||+ +|+++..|++.|+ +|+|+||+.+ +| . +...++|+|||+|+.
T Consensus 122 ~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 122 VDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred cccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 5677999999999999 9999999999996 6999999742 11 0 111158999999985
Q ss_pred CC-------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976 134 AN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 206 (216)
Q Consensus 134 p~-------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~ 206 (216)
.+ +++.+.++++.+|+|+.|+|.+ |+|+ +.+ ++.|+.| .+|.| ||++|++
T Consensus 201 Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------TplL-----~~A-~~~G~~~--idGl~-----Mlv~Qaa 257 (283)
T COG0169 201 GMAGPEGDSPVPAELLPKGAIVYDVVYNPLE----------TPLL-----REA-RAQGAKT--IDGLG-----MLVHQAA 257 (283)
T ss_pred CCCCCCCCCCCcHHhcCcCCEEEEeccCCCC----------CHHH-----HHH-HHcCCeE--ECcHH-----HHHHHHH
Confidence 33 2345778999999999999987 7899 555 7788864 77989 9999999
Q ss_pred HHHHHHhCC
Q 027976 207 DSAKRAYGF 215 (216)
Q Consensus 207 ~a~~~~~~~ 215 (216)
.+|++|+|+
T Consensus 258 ~aF~lwtg~ 266 (283)
T COG0169 258 EAFELWTGV 266 (283)
T ss_pred HHHHHHhCC
Confidence 999999986
No 46
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=99.95 E-value=7.4e-28 Score=209.98 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=146.4
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Cccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
+++.+|.+++.|++||+||| ....++++.++| ++.+.++ |.++ .|++. |+++|+ .|+++.|++.+.+
T Consensus 51 ~~~~l~~~~~~G~nVT~P~K--~~~~~~lD~l~~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~- 120 (272)
T PRK12550 51 AIGGVRALGIRGCAVSMPFK--EAVIPLVDELDPSAQAIESVNTIVNTDGHLK-AYNTDY------IAIAKLLASYQVP- 120 (272)
T ss_pred HHHHHHhcCCCEEEECcCCH--HHHHHHhhcCCHHHHHhCCeeEEEeeCCEEE-EEecCH------HHHHHHHHhcCCC-
Confidence 46788889999999999999 556888999999 8888888 4444 45554 666666 9999999988775
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---HH--------hhc--cCCCEEEEecCCCC---------
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PE--------QIT--SEADIVIAAAGVAN--------- 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~--------~~~--~~ADIVIsatg~p~--------- 135 (216)
.+++++|+|+||+ +|+++..|++.|+ +|+|++|+.+. +. +.+ ..+|+|||||+..+
T Consensus 121 ~~~~vlilGaGGa-arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~ 199 (272)
T PRK12550 121 PDLVVALRGSGGM-AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKL 199 (272)
T ss_pred CCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccC
Confidence 4679999999998 9999999999997 59999997421 11 112 45899999998432
Q ss_pred cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 136 LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 136 ~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
+++.++++++.+|+|+.|+|.+ |+|+ +.+ ++.|+ ++.+|++ ||++|++.+||+|+|+
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg~ 256 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPAE----------TPLI-----RYA-RARGK--TVITGAE-----VIALQAVEQFVLYTGV 256 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCcc----------CHHH-----HHH-HHCcC--eEeCCHH-----HHHHHHHHHHHHHhCC
Confidence 3566778999999999999977 6888 555 78898 5588988 9999999999999996
Q ss_pred C
Q 027976 216 T 216 (216)
Q Consensus 216 ~ 216 (216)
.
T Consensus 257 ~ 257 (272)
T PRK12550 257 R 257 (272)
T ss_pred C
Confidence 3
No 47
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=99.95 E-value=2.2e-27 Score=207.28 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=148.4
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHH-hCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIR-SGVE 77 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~-~~~~ 77 (216)
+++.++.+++.|++|++||| .+..++++.++| ++.+.+++ .++ .|++. |+++|+ .|+++.|++ .+.+
T Consensus 50 ~~~~~~~~~~~G~nVT~P~K--~~~~~~~d~~~~~A~~igavNtv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~ 120 (278)
T PRK00258 50 AVKGFFALGGRGANVTVPFK--EAAFALADELSERARLIGAVNTLVLEDGRLI-GDNTDG------IGFVRALEERLGVD 120 (278)
T ss_pred HHHHHHhCCCCEEEECcCCH--HHHHHHhhcCCHHHHHhCCceEEEeeCCEEE-EEcccH------HHHHHHHHhccCCC
Confidence 46778888999999999999 666888999999 88888884 335 44554 655555 999999986 5778
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCCC-------------------HHhhccCCCEEEEecCCCC--
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN-------------------PEQITSEADIVIAAAGVAN-- 135 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~-------------------l~~~~~~ADIVIsatg~p~-- 135 (216)
+++|+++|+|+|++ |++++..|+..| ++|++++|+.+. +.+.+.++|+||++|+.++
T Consensus 121 ~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 121 LKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 99999999999997 999999999999 689999987321 1234577999999998654
Q ss_pred -----cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976 136 -----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210 (216)
Q Consensus 136 -----~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~ 210 (216)
+++.++++++.+|+|+.|+|.+ |+|+ +.+ +++|+ ++.+|.+ ||++|++.+|+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----Ml~~Qa~~~f~ 256 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGPLP----------TPFL-----AWA-KAQGA--RTIDGLG-----MLVHQAAEAFE 256 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCCCC----------CHHH-----HHH-HHCcC--eecCCHH-----HHHHHHHHHHH
Confidence 2455778999999999999976 6888 555 88899 5688988 99999999999
Q ss_pred HHhCC
Q 027976 211 RAYGF 215 (216)
Q Consensus 211 ~~~~~ 215 (216)
+|+|+
T Consensus 257 ~wtg~ 261 (278)
T PRK00258 257 LWTGV 261 (278)
T ss_pred HHcCC
Confidence 99996
No 48
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=99.94 E-value=5.6e-27 Score=205.33 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=143.6
Q ss_pred hhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc--cccccccCCCCccCCCcHHHHHHHHHHhCC--
Q 027976 3 VQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGV-- 76 (216)
Q Consensus 3 ~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~-- 76 (216)
+++++. ++.|++||+||| ....++++.++| +|.+.+++ .++ .|+++ |+|+|+ .|+++.|++.+.
T Consensus 52 ~~~~~~-~~~G~nVT~P~K--~~~~~~~d~~~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~ 121 (282)
T TIGR01809 52 LSGFGP-QFGGASVTIPLK--FAILRFADEHTDRASLIGSVNTLLRTQNGIWK-GDNTDW------DGIAGALANIGKFE 121 (282)
T ss_pred HHhcCC-CCcEEEECCCCH--HHHHHHhhcCCHHHHHhCceeEEEEcCCCcEE-EecCCH------HHHHHHHHhhCCcc
Confidence 445544 899999999999 666888899999 88888884 434 35564 666666 999999998773
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC----------------------CHHhhccCCCEEEEecCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK----------------------NPEQITSEADIVIAAAGV 133 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~ 133 (216)
++++|+++|||+||+ ||+++..|++.|+ +|+|++|+.+ ++.+.+.++|+|||+|+.
T Consensus 122 ~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 122 PLAGFRGLVIGAGGT-SRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred ccCCceEEEEcCcHH-HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 689999999999998 9999999999997 6999998621 112345678999999998
Q ss_pred CCcccCCc------------ccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976 134 ANLVRGSW------------LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML 201 (216)
Q Consensus 134 p~~i~~~~------------i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL 201 (216)
.++++.+. ++++.+|+|+.|+|.+ |+|+ +.+ +++|+ ++.+|.+ ||
T Consensus 201 g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----ML 257 (282)
T TIGR01809 201 DVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP----------TPLV-----AIV-SAAGW--RVISGLQ-----ML 257 (282)
T ss_pred CCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC----------CHHH-----HHH-HHCCC--EEECcHH-----HH
Confidence 77654433 2457899999999987 6888 444 77898 4578988 99
Q ss_pred HHHHHHHHHHHhCCC
Q 027976 202 LSNTLDSAKRAYGFT 216 (216)
Q Consensus 202 l~n~~~a~~~~~~~~ 216 (216)
++|++.+|+.|+|.+
T Consensus 258 v~Qa~~~f~lwtg~~ 272 (282)
T TIGR01809 258 LHQGFAQFEQWTGMP 272 (282)
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999963
No 49
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=99.93 E-value=5.2e-26 Score=197.65 Aligned_cols=181 Identities=18% Similarity=0.123 Sum_probs=145.6
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
+++++|.+++.|++||+||| .+..++++.+++ ++.+.+++ .++ .|++. |+++|+ .|+++.|++.....
T Consensus 45 ~~~~~~~~~~~G~nVT~P~K--~~~~~~~d~~~~~A~~~gavNti~~~~g~l~-g~NTD~------~G~~~~l~~~~~~~ 115 (270)
T TIGR00507 45 ALSGFFALGFKGANVTSPFK--EEAFQFLDEIDERAKLAGAVNTLKLEDGKLV-GYNTDG------IGLVSDLERLIPLR 115 (270)
T ss_pred HHHHHHhcCCCEEEECcCCH--HHHHHHhhhCCHHHHHhCCceEEEeeCCEEE-EEcCCH------HHHHHHHHhcCCCc
Confidence 46778888999999999999 666888999999 88888884 334 45554 655555 99999999877777
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH------------------H-hhccCCCEEEEecCCCC----
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP------------------E-QITSEADIVIAAAGVAN---- 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l------------------~-~~~~~ADIVIsatg~p~---- 135 (216)
++|+++|+|+|++ |++++..|++.|++|++++|+.+.. . ....++|+||++|+..+
T Consensus 116 ~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 116 PNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred cCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 8999999999986 9999999999999999998863211 1 12257899999999642
Q ss_pred ---cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976 136 ---LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212 (216)
Q Consensus 136 ---~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~ 212 (216)
.++.++++++.+|+|+.|+|.+ |+|+ +.+ +++|+ ++.+|.+ ||++|++.+|++|
T Consensus 195 ~~~~~~~~~l~~~~~v~D~~y~p~~----------T~ll-----~~A-~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w 251 (270)
T TIGR00507 195 DEPPVPAEKLKEGMVVYDMVYNPGE----------TPFL-----AEA-KSLGT--KTIDGLG-----MLVAQAALAFELW 251 (270)
T ss_pred CCCCCCHHHcCCCCEEEEeccCCCC----------CHHH-----HHH-HHCCC--eeeCCHH-----HHHHHHHHHHHHH
Confidence 2345668899999999999976 5676 444 78888 5588988 9999999999999
Q ss_pred hCC
Q 027976 213 YGF 215 (216)
Q Consensus 213 ~~~ 215 (216)
+|+
T Consensus 252 ~g~ 254 (270)
T TIGR00507 252 TGV 254 (270)
T ss_pred cCC
Confidence 996
No 50
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=99.92 E-value=1e-24 Score=205.76 Aligned_cols=182 Identities=21% Similarity=0.205 Sum_probs=146.7
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc---cccccccCCCCccCCCcHHHHHHHHHHh--
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRS-- 74 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n---~g~l~~~~~~~~~~p~Ta~g~~~~L~~~-- 74 (216)
+++.+|..++.|++|++||| ....++++.++| ++.+.+++ .++ .|++. |+|+|+ .|+++.|++.
T Consensus 295 ~~~~l~~~~~~G~nVTiP~K--~~v~~~lD~~~~~A~~iGAVNTvv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~ 365 (529)
T PLN02520 295 FLQTYSSPDFAGFSCTIPHK--EDALKCCDEVDPIAKSIGAINTIIRRPSDGKLV-GYNTDY------IGAISAIEDGLR 365 (529)
T ss_pred HHHHHhhCCCCEEEECcCCH--HHHHHHhccCCHHHHHhCCceEEEEeCCCCEEE-EEcccH------HHHHHHHHhhhc
Confidence 46778889999999999999 566888899999 89998884 334 36664 766666 9999999852
Q ss_pred --------CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---H--------------Hh-hccCCCEEE
Q 027976 75 --------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---P--------------EQ-ITSEADIVI 128 (216)
Q Consensus 75 --------~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l--------------~~-~~~~ADIVI 128 (216)
+.++++|+++|+|+||+ |++++..|+++|++|++++|+.+. + .+ ....+|+||
T Consensus 366 ~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiI 444 (529)
T PLN02520 366 ASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILA 444 (529)
T ss_pred ccccccccccCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEE
Confidence 45789999999999997 999999999999999999886321 1 11 123579999
Q ss_pred EecCCCC-------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976 129 AAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML 201 (216)
Q Consensus 129 satg~p~-------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL 201 (216)
++|+..+ +++.+++++..+|+|+.|+|.+ |+|+ +.+ +++|+ ++.+|++ ||
T Consensus 445 NtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----ML 501 (529)
T PLN02520 445 NTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKI----------TRLL-----REA-EESGA--IIVSGTE-----MF 501 (529)
T ss_pred ecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCc----------CHHH-----HHH-HHCCC--eEeCcHH-----HH
Confidence 9987532 3566778899999999999987 6888 555 78899 5588988 99
Q ss_pred HHHHHHHHHHHhCCC
Q 027976 202 LSNTLDSAKRAYGFT 216 (216)
Q Consensus 202 l~n~~~a~~~~~~~~ 216 (216)
++|++.+|++|+|.+
T Consensus 502 v~Qa~~~f~lwtg~~ 516 (529)
T PLN02520 502 IRQAYEQFERFTGLP 516 (529)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999963
No 51
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=99.90 E-value=1.5e-23 Score=195.65 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=144.8
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI 78 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l 78 (216)
+++.++..++.|++|++||| ....++++.++| ++.+.+++ .++ .|++. |+|+|+ .|+++.|++.+.++
T Consensus 260 ~~~~~~~~~~~G~nVT~P~K--~~v~~~~d~~~~~A~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~ 330 (477)
T PRK09310 260 FFSTIRDLPFLGLSVTMPLK--TAVLDFLDKLDPSVKLCGSCNTLVFRNGKIE-GYNTDG------EGLFSLLKQKNIPL 330 (477)
T ss_pred HHHHHHhCCCCEEEECccCH--HHHHHHhccCCHHHHHhCcceEEEeeCCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence 45778888999999999999 666888899999 89988884 334 56664 766666 99999999999999
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--------------H--hhccCCCEEEEecCCCCcccCCcc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------E--QITSEADIVIAAAGVANLVRGSWL 142 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~--~~~~~ADIVIsatg~p~~i~~~~i 142 (216)
++++++|+|+|++ |++++..|.+.|++|++++|+.... . ..+.++|+||++|+....+.. .+
T Consensus 331 ~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~~-~l 408 (477)
T PRK09310 331 NNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIPK-AF 408 (477)
T ss_pred CCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcchh-HH
Confidence 9999999999986 9999999999999999998863211 1 114678999999987655543 33
Q ss_pred cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 143 ~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~ 215 (216)
. .+|+|+.|+|.+ |.|+ +.+ ++.|+ ++.+|++ ||++|++.+|++|+|.
T Consensus 409 ~--~~v~D~~Y~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g~ 456 (477)
T PRK09310 409 P--PCVVDINTLPKH----------SPYT-----QYA-RSQGS--SIIYGYE-----MFAEQALLQFRLWFPT 456 (477)
T ss_pred h--hhEEeccCCCCC----------CHHH-----HHH-HHCcC--EEECcHH-----HHHHHHHHHHHHHcCC
Confidence 3 389999999976 5777 444 77898 4578988 9999999999999996
No 52
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.65 E-value=8.5e-16 Score=135.61 Aligned_cols=130 Identities=22% Similarity=0.362 Sum_probs=104.1
Q ss_pred cHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCCC
Q 027976 63 TPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEAD 125 (216)
Q Consensus 63 Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~AD 125 (216)
|+++ +.+.+++++.++.|++|+|+|+|.+ |++++..|...|++|++++|+.. ++.+.++++|
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID 212 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence 4555 5566778888999999999999985 99999999999999999988742 3557789999
Q ss_pred EEEEecCCCCcccCCc---ccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhH---cceecccCCcccHHHHH
Q 027976 126 IVIAAAGVANLVRGSW---LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVA 199 (216)
Q Consensus 126 IVIsatg~p~~i~~~~---i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~---~~~~tpvpgGvGp~T~a 199 (216)
+||++++.+ .++.++ ++++.++||++++| |++||+.++++ ..+.++.||+++|+|.+
T Consensus 213 iVI~t~p~~-~i~~~~l~~~~~g~vIIDla~~p----------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~ 275 (296)
T PRK08306 213 IIFNTIPAL-VLTKEVLSKMPPEALIIDLASKP----------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAG 275 (296)
T ss_pred EEEECCChh-hhhHHHHHcCCCCcEEEEEccCC----------------CCcCeeehhhCCeEEEEECCCCccCCHHHHH
Confidence 999998643 355554 68899999999976 44666555333 44457889999999999
Q ss_pred HHHHHHHHHHH
Q 027976 200 MLLSNTLDSAK 210 (216)
Q Consensus 200 mLl~n~~~a~~ 210 (216)
.++.|.+..+-
T Consensus 276 ~~~~~~i~~~l 286 (296)
T PRK08306 276 QILANVLSQLL 286 (296)
T ss_pred HHHHHHHHHHH
Confidence 99999987763
No 53
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.61 E-value=4.3e-15 Score=130.69 Aligned_cols=129 Identities=26% Similarity=0.380 Sum_probs=101.5
Q ss_pred CcHHHHH-HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCC
Q 027976 62 CTPKGCI-ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEA 124 (216)
Q Consensus 62 ~Ta~g~~-~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~A 124 (216)
+|+++++ .+++.++++++||+++|+|.|++ |++++..|...|++|++++|+.+ ++.+.++++
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a 210 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI 210 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence 4666654 55667788999999999999996 99999999999999999988642 345678899
Q ss_pred CEEEEecCCCCcccCC---cccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceec---c-cCCcccHHH
Q 027976 125 DIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT---P-VPGGVGPMT 197 (216)
Q Consensus 125 DIVIsatg~p~~i~~~---~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t---p-vpgGvGp~T 197 (216)
|+||++++.+ .++.+ .+++++++||++|+| |.+||+.+ ++.|..+ | .||.++|.|
T Consensus 211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P----------------g~tdf~~A-k~~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP----------------GGTDFEYA-KKRGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC----------------CCCCHHHH-HHCCCEEEEeCCCCcccCchh
Confidence 9999999754 23433 468899999999986 55677544 5655332 3 799999999
Q ss_pred HHHHHHHHHHHH
Q 027976 198 VAMLLSNTLDSA 209 (216)
Q Consensus 198 ~amLl~n~~~a~ 209 (216)
.+.++.|++...
T Consensus 273 a~~i~~~~~~~~ 284 (287)
T TIGR02853 273 AGKILANVLSEL 284 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 54
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.56 E-value=5.9e-14 Score=111.15 Aligned_cols=128 Identities=27% Similarity=0.406 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-------------------CHHhhcc
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-------------------NPEQITS 122 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-------------------~l~~~~~ 122 (216)
+..|+.+.+++.+.++++++++|+|.|++ |++++..|++.| .+|++++++.+ +..+.++
T Consensus 2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (155)
T cd01065 2 DGLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA 80 (155)
T ss_pred CHHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc
Confidence 44899999999998899999999999875 999999999986 67999977521 2234468
Q ss_pred CCCEEEEecCCCCc------ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHH
Q 027976 123 EADIVIAAAGVANL------VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPM 196 (216)
Q Consensus 123 ~ADIVIsatg~p~~------i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~ 196 (216)
++|+||++++.+.. +....++++.+|+|++|.|.. +.+. +.+ ++.+. .+.+|..
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~----------~~l~-----~~~-~~~g~--~~v~g~~-- 140 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE----------TPLL-----KEA-RALGA--KTIDGLE-- 140 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC----------CHHH-----HHH-HHCCC--ceeCCHH--
Confidence 89999999986542 233446789999999998754 3344 344 66676 4567877
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 027976 197 TVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 197 T~amLl~n~~~a~~~~~~ 214 (216)
||++|++++++.|+|
T Consensus 141 ---~~~~q~~~~~~~~~~ 155 (155)
T cd01065 141 ---MLVYQAAEAFELWTG 155 (155)
T ss_pred ---HHHHHHHHHHHHhcC
Confidence 999999999999997
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=99.45 E-value=8.4e-14 Score=109.43 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=70.4
Q ss_pred HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC--------------------CCHHhhccCCCEEE
Q 027976 70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------------KNPEQITSEADIVI 128 (216)
Q Consensus 70 ~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t--------------------~~l~~~~~~ADIVI 128 (216)
+.++...++++++++|+|+||+ |++++..|..+|++ |++++|+. .++.+.+.++|+||
T Consensus 2 la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 2 LAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp HHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred hhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 3344445899999999999998 99999999999986 99999972 23556788999999
Q ss_pred EecCCCCc-ccCCcccCC----cEEEEeeeCCcc
Q 027976 129 AAAGVANL-VRGSWLKPG----AVVLDVGTCPVD 157 (216)
Q Consensus 129 satg~p~~-i~~~~i~~g----~vViDvg~~~~~ 157 (216)
+||+.+++ ++.+++++. .+|+|++++|+.
T Consensus 81 ~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 81 NATPSGMPIITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp E-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred EecCCCCcccCHHHHHHHHhhhhceeccccCCCC
Confidence 99999886 788898876 599999988764
No 56
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=99.29 E-value=4.8e-12 Score=115.90 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=95.1
Q ss_pred HHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EE
Q 027976 29 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TV 107 (216)
Q Consensus 29 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~V 107 (216)
+..+|+-.|.|..-|.++.|... -+++++++.++...+|++|+++|||+|.+ |..+|..|..+|. .|
T Consensus 138 FqkAi~~gKrvRseT~I~~~~VS-----------i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i 205 (414)
T COG0373 138 FQKAISVGKRVRSETGIGKGAVS-----------ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKI 205 (414)
T ss_pred HHHHHHHHHHhhcccCCCCCccc-----------hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEE
Confidence 34566667777666666655443 23889999999888899999999999997 9999999999995 69
Q ss_pred EEEeCCC-----------------CCHHhhccCCCEEEEecCCCCc-ccCCcccC------CcEEEEeeeCCcc
Q 027976 108 SIVHALT-----------------KNPEQITSEADIVIAAAGVANL-VRGSWLKP------GAVVLDVGTCPVD 157 (216)
Q Consensus 108 ti~~~~t-----------------~~l~~~~~~ADIVIsatg~p~~-i~~~~i~~------g~vViDvg~~~~~ 157 (216)
+|+||+- +++.+++.++|+||++||.|++ ++.+++.. ..++||++.||+.
T Consensus 206 ~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdi 279 (414)
T COG0373 206 TIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDV 279 (414)
T ss_pred EEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence 9999982 3567899999999999999998 67777643 2589999999975
No 57
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.25 E-value=2.2e-11 Score=103.75 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC----CC--------------------
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL----TK-------------------- 115 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~----t~-------------------- 115 (216)
+-.|++..++..+.++++++++|+|+|++ |++++.+|...|+ ++++++|+ ..
T Consensus 8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~ 86 (226)
T cd05311 8 TLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK 86 (226)
T ss_pred HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc
Confidence 45789999999999999999999999998 9999999999997 49999987 11
Q ss_pred ---CHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeCCcc
Q 027976 116 ---NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPVD 157 (216)
Q Consensus 116 ---~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~~~~ 157 (216)
++.+.++++|+||++|+ +..+++++++ ++.+|+|+. ||.+
T Consensus 87 ~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~ 132 (226)
T cd05311 87 TGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVP 132 (226)
T ss_pred ccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCC
Confidence 23456677999999999 6667777776 788999987 8765
No 58
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=99.23 E-value=4.4e-11 Score=86.83 Aligned_cols=78 Identities=29% Similarity=0.460 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHhC----CCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCc
Q 027976 62 CTPKGCIELLIRSG----VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTKNPEQITSEADIVIAAAGVANL 136 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~----~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~ 136 (216)
||+.++++.|++.. .++++|+++|+|+|.. |++++.+|.+. +.+|++++| |++|++++.+++
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~-g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~ 67 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV-GKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP 67 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence 68888888888654 4589999999999775 99999999998 467999877 999999999998
Q ss_pred ccC---CcccCCcEEEEee
Q 027976 137 VRG---SWLKPGAVVLDVG 152 (216)
Q Consensus 137 i~~---~~i~~g~vViDvg 152 (216)
+.+ ++++++.+|+|+.
T Consensus 68 ~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 68 VLEEATAKINEGAVVIDLA 86 (86)
T ss_pred chHHHHHhcCCCCEEEecC
Confidence 766 6788999999974
No 59
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.21 E-value=6.5e-11 Score=95.86 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=66.9
Q ss_pred HHHHHHH-HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEe
Q 027976 65 KGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 65 ~g~~~~L-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsa 130 (216)
+..++.+ +..+..+.||+++|+|.|.. ||.+|+.|...|+.|+|+...+ ..+.+.++++|++|++
T Consensus 7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 4444444 45688999999999999985 9999999999999999997753 3577899999999999
Q ss_pred cCCCCcccCCc---ccCCcEEEEeeeCCcc
Q 027976 131 AGVANLVRGSW---LKPGAVVLDVGTCPVD 157 (216)
Q Consensus 131 tg~p~~i~~~~---i~~g~vViDvg~~~~~ 157 (216)
||..+.++.++ +|+|+++.++++...|
T Consensus 86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred CCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence 99988888776 4889999999987655
No 60
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=99.19 E-value=3.4e-11 Score=110.98 Aligned_cols=143 Identities=17% Similarity=0.129 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC------------------CCHHhhccC
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KNPEQITSE 123 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t------------------~~l~~~~~~ 123 (216)
-+++++++.++...++.|++++|||+|++ |+.++..|..+|+ ++++++|+. .++.+.+.+
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~ 242 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK 242 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence 45778899888777899999999999998 9999999999996 699999872 124567889
Q ss_pred CCEEEEecCCCCc-ccCCcccC-CcEEEEeeeCCccCCCCCCCC--CCCeEecccCh-HHHhhHcceecccCCcccHHHH
Q 027976 124 ADIVIAAAGVANL-VRGSWLKP-GAVVLDVGTCPVDVSVDPSCE--YGYRLMGDVCY-EEAMRLASVITPVPGGVGPMTV 198 (216)
Q Consensus 124 ADIVIsatg~p~~-i~~~~i~~-g~vViDvg~~~~~~~~~~~~~--~~~~l~GDvd~-~~~~~~~~~~tpvpgGvGp~T~ 198 (216)
||+||+||++|++ |+.++++. ..++||++.+++. |+.-. .|-.++ |+|. +...++....- ---...+
T Consensus 243 aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdi---dp~v~~l~~v~l~-~iDdl~~i~~~n~~~R----~~~~~~a 314 (414)
T PRK13940 243 ADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQAL---DPKLGELEQNVYY-CVDDINAVIEDNKDKR----KYESSKA 314 (414)
T ss_pred CCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCC---CccccCcCCeEEE-eHHHHHHHHHHHHHHH----HHHHHHH
Confidence 9999999999998 68777653 4689999999986 33210 122333 5552 11111100000 0011124
Q ss_pred HHHHHHHHHHHHHHhC
Q 027976 199 AMLLSNTLDSAKRAYG 214 (216)
Q Consensus 199 amLl~n~~~a~~~~~~ 214 (216)
..++..-+..|..|+.
T Consensus 315 ~~iI~e~~~~f~~w~~ 330 (414)
T PRK13940 315 QKIIVKSLEEYLEKEK 330 (414)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677778888888863
No 61
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=99.17 E-value=3.3e-10 Score=93.57 Aligned_cols=95 Identities=29% Similarity=0.312 Sum_probs=71.7
Q ss_pred cHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------
Q 027976 63 TPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------- 115 (216)
Q Consensus 63 Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------- 115 (216)
|+.+.++++ ++++.++++++++|+|+.|.+|+.++..|++.|++|++++|+.+
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~ 86 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS 86 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC
Confidence 555555544 45567999999999997444699999999999999999877521
Q ss_pred ---CHHhhccCCCEEEEecCCCCc--ccCC-cccCCcEEEEeeeCCcc
Q 027976 116 ---NPEQITSEADIVIAAAGVANL--VRGS-WLKPGAVVLDVGTCPVD 157 (216)
Q Consensus 116 ---~l~~~~~~ADIVIsatg~p~~--i~~~-~i~~g~vViDvg~~~~~ 157 (216)
++.+.++++|+||++|+.+.+ ...+ ..+++.+++|+.|+|+.
T Consensus 87 ~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 87 DDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCC
Confidence 123567889999999998773 3333 34568899999999975
No 62
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.06 E-value=2.5e-10 Score=106.37 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=72.8
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcc
Q 027976 71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLV 137 (216)
Q Consensus 71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i 137 (216)
++..+..+.||+++|+|.|. +|+++|..|...|++|+++++.. .++.+.+++||+||+++|.++.+
T Consensus 245 ~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI 323 (476)
T PTZ00075 245 FRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDII 323 (476)
T ss_pred HHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccccc
Confidence 44567889999999999998 59999999999999999997652 24677899999999999998888
Q ss_pred cCCcc---cCCcEEEEeeeCC
Q 027976 138 RGSWL---KPGAVVLDVGTCP 155 (216)
Q Consensus 138 ~~~~i---~~g~vViDvg~~~ 155 (216)
+.++| |++++++++|...
T Consensus 324 ~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred CHHHHhccCCCcEEEEcCCCc
Confidence 87776 8999999999875
No 63
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.99 E-value=5e-09 Score=94.29 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=72.2
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCCC---------------CHHhhccCCCEEEEecCC
Q 027976 71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK---------------NPEQITSEADIVIAAAGV 133 (216)
Q Consensus 71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~ 133 (216)
.+..+.++++|+|+|+|++|.+|+.+++.|+.+ |+ ++++++|+.. ++.+.+.++|+||++++.
T Consensus 146 ~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 146 APRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM 225 (340)
T ss_pred HHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence 345567899999999999888899999999864 54 7999988631 233678899999999998
Q ss_pred CCc--ccCCcccCCcEEEEeeeCCcc
Q 027976 134 ANL--VRGSWLKPGAVVLDVGTCPVD 157 (216)
Q Consensus 134 p~~--i~~~~i~~g~vViDvg~~~~~ 157 (216)
++. +++++++++.++||++++++-
T Consensus 226 ~~~~~I~~~~l~~~~~viDiAvPRDV 251 (340)
T PRK14982 226 PKGVEIDPETLKKPCLMIDGGYPKNL 251 (340)
T ss_pred CcCCcCCHHHhCCCeEEEEecCCCCC
Confidence 765 788999999999999999975
No 64
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.95 E-value=1.6e-09 Score=97.33 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----CHH----hhccCCCEEEEe---
Q 027976 64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----NPE----QITSEADIVIAA--- 130 (216)
Q Consensus 64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----~l~----~~~~~ADIVIsa--- 130 (216)
+++++++++.. -++++|+++|||+|.+ |+.++..|.++|+ +|+++||+.. ++. +...++||||++
T Consensus 159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~ 236 (338)
T PRK00676 159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSE 236 (338)
T ss_pred HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCc
Confidence 35567777665 5799999999999997 9999999999995 6999999832 222 446789999997
Q ss_pred cCCCCc-ccCCcccC--CcEEEEeeeCCcc
Q 027976 131 AGVANL-VRGSWLKP--GAVVLDVGTCPVD 157 (216)
Q Consensus 131 tg~p~~-i~~~~i~~--g~vViDvg~~~~~ 157 (216)
|+.|++ ++.+++++ ..++||++.+++.
T Consensus 237 Tas~~p~i~~~~~~~~~~r~~iDLAvPRdI 266 (338)
T PRK00676 237 SAYAFPHLSWESLADIPDRIVFDFNVPRTF 266 (338)
T ss_pred CCCCCceeeHHHHhhccCcEEEEecCCCCC
Confidence 678887 66666643 2589999999986
No 65
>PLN00203 glutamyl-tRNA reductase
Probab=98.86 E-value=5.2e-09 Score=98.98 Aligned_cols=143 Identities=12% Similarity=0.081 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHhCC--CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHHh
Q 027976 63 TPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQ 119 (216)
Q Consensus 63 Ta~g~~~~L~~~~~--~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~ 119 (216)
-+++++++.++..- ++.+++|+|||+|++ |+.++..|...|+ +|++++|+. .++.+
T Consensus 247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~ 325 (519)
T PLN00203 247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA 325 (519)
T ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence 44678888876643 489999999999886 9999999999997 699998862 13446
Q ss_pred hccCCCEEEEecCCCCc-ccCCcccC----------CcEEEEeeeCCccCCCCCCC--CCCCeEecccCh-HHHhhHcce
Q 027976 120 ITSEADIVIAAAGVANL-VRGSWLKP----------GAVVLDVGTCPVDVSVDPSC--EYGYRLMGDVCY-EEAMRLASV 185 (216)
Q Consensus 120 ~~~~ADIVIsatg~p~~-i~~~~i~~----------g~vViDvg~~~~~~~~~~~~--~~~~~l~GDvd~-~~~~~~~~~ 185 (216)
.+.+||+||++|+++++ +..+++++ ..++||++.+++. |+.- ..+-.++ |+|. +.+.++...
T Consensus 326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI---dp~v~~l~~v~ly-diDdL~~i~~~n~~ 401 (519)
T PLN00203 326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNV---GACVSELESARVY-NVDDLKEVVAANKE 401 (519)
T ss_pred HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCC---ccccccCCCCeEE-EeccHHHHHHHhHH
Confidence 67899999999999887 78887643 2489999999975 2210 0122333 5552 121111000
Q ss_pred ecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976 186 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG 214 (216)
Q Consensus 186 ~tpvpgGvGp~T~amLl~n~~~a~~~~~~ 214 (216)
.- ---..-+..++..-+..|+.|+.
T Consensus 402 ~R----~~~~~~Ae~II~ee~~~F~~w~~ 426 (519)
T PLN00203 402 DR----LRKAMEAQTIIREESKNFEAWRD 426 (519)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00111245677777888888864
No 66
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.79 E-value=1.7e-08 Score=93.36 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=78.4
Q ss_pred CcHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEE
Q 027976 62 CTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV 127 (216)
Q Consensus 62 ~Ta~g~~~~L~~~-~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIV 127 (216)
.|..+++..+++. +..+.|++|+|+|.|.+ |+.++..|...|++|++++++. .++.+.++.+|+|
T Consensus 193 gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVV 271 (425)
T PRK05476 193 GTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIF 271 (425)
T ss_pred HHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEE
Confidence 4678888877766 77889999999999875 9999999999999999997653 1356778899999
Q ss_pred EEecCCCCcccCCc---ccCCcEEEEeeeCCc
Q 027976 128 IAAAGVANLVRGSW---LKPGAVVLDVGTCPV 156 (216)
Q Consensus 128 Isatg~p~~i~~~~---i~~g~vViDvg~~~~ 156 (216)
|++||.++.+..++ +++|++++++|....
T Consensus 272 I~aTG~~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 272 VTATGNKDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred EECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 99999888776544 589999999998764
No 67
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.76 E-value=2.5e-08 Score=92.13 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHHhhccCC
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEA 124 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~A 124 (216)
.+..++++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++++.. ++.+.+.++
T Consensus 165 v~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~a 243 (423)
T PRK00045 165 VASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEA 243 (423)
T ss_pred HHHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccC
Confidence 34455666655434689999999999886 9999999999997 6999988621 233567889
Q ss_pred CEEEEecCCCCc-ccCCcccC--------CcEEEEeeeCCcc
Q 027976 125 DIVIAAAGVANL-VRGSWLKP--------GAVVLDVGTCPVD 157 (216)
Q Consensus 125 DIVIsatg~p~~-i~~~~i~~--------g~vViDvg~~~~~ 157 (216)
|+||++||.|++ ++.+|+++ +.+++|++.+++.
T Consensus 244 DvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 244 DIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred CEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 999999999886 78888843 4799999988765
No 68
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.73 E-value=2.6e-08 Score=91.98 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-----------------CHHhhccCCC
Q 027976 64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------NPEQITSEAD 125 (216)
Q Consensus 64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------~l~~~~~~AD 125 (216)
+.+++++.++...++.|++++|+|+|.+ |+.++..|...| .+|++++|+.. ++.+.+.++|
T Consensus 164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD 242 (417)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence 4556666666555689999999999886 999999999999 57999988631 2446678999
Q ss_pred EEEEecCCCCc-ccCCcccC-------CcEEEEeeeCCcc
Q 027976 126 IVIAAAGVANL-VRGSWLKP-------GAVVLDVGTCPVD 157 (216)
Q Consensus 126 IVIsatg~p~~-i~~~~i~~-------g~vViDvg~~~~~ 157 (216)
+||++||.|++ ++.+|+++ ..+++|++.+++.
T Consensus 243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 99999998886 78888743 3599999977754
No 69
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.64 E-value=8.1e-08 Score=86.28 Aligned_cols=91 Identities=25% Similarity=0.395 Sum_probs=74.5
Q ss_pred HHHHH-HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEe
Q 027976 65 KGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 65 ~g~~~-~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsa 130 (216)
.+.+. +++.+++-+.||+++|.|.|.. ||.+|+.|...||+|.|..-.. ..+.++.+.+||+||+
T Consensus 193 qS~~DgI~RaTn~liaGK~vVV~GYG~v-GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 193 QSLLDGILRATNVLLAGKNVVVAGYGWV-GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA 271 (420)
T ss_pred hhHHHHHHhhhceeecCceEEEeccccc-chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc
Confidence 44333 3445788899999999999985 9999999999999998886553 1356788999999999
Q ss_pred cCCCCcccCCcc---cCCcEEEEeeeCCc
Q 027976 131 AGVANLVRGSWL---KPGAVVLDVGTCPV 156 (216)
Q Consensus 131 tg~p~~i~~~~i---~~g~vViDvg~~~~ 156 (216)
||..+.|+.+++ |+|+++.++|+.-.
T Consensus 272 TGnkdVi~~eh~~~MkDgaIl~N~GHFd~ 300 (420)
T COG0499 272 TGNKDVIRKEHFEKMKDGAILANAGHFDV 300 (420)
T ss_pred cCCcCccCHHHHHhccCCeEEecccccce
Confidence 999988988875 67999999996543
No 70
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=98.63 E-value=1.9e-08 Score=77.47 Aligned_cols=33 Identities=39% Similarity=0.494 Sum_probs=29.0
Q ss_pred ccCccEEEEccCCCCCCCHHHHHhcCCcccccC
Q 027976 8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVD 40 (216)
Q Consensus 8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvd 40 (216)
+-++|||+||+|||+|+++.+++++|+|+||||
T Consensus 85 D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD 117 (117)
T PF00763_consen 85 DPSVHGILVQLPLPKHIDERKILEAIDPEKDVD 117 (117)
T ss_dssp -TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred CCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence 357999999999999999999999999999997
No 71
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.61 E-value=2.1e-07 Score=85.68 Aligned_cols=94 Identities=28% Similarity=0.378 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEE
Q 027976 62 CTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV 127 (216)
Q Consensus 62 ~Ta~g~~~~L~~-~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIV 127 (216)
+|...+++.+.+ .++.+.|++|+|+|.|.+ |+.+++.|...|++|+++.+.. .++.+.++.+|+|
T Consensus 176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV 254 (406)
T TIGR00936 176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF 254 (406)
T ss_pred ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence 355555555544 577899999999999985 9999999999999999986543 1356778899999
Q ss_pred EEecCCCCcccC---CcccCCcEEEEeeeCCc
Q 027976 128 IAAAGVANLVRG---SWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 128 Isatg~p~~i~~---~~i~~g~vViDvg~~~~ 156 (216)
|+++|.++.+.. ..+++|++++.+|....
T Consensus 255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~ 286 (406)
T TIGR00936 255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDV 286 (406)
T ss_pred EECCCCHHHHHHHHHhcCCCCcEEEEECCCCc
Confidence 999998887776 44689999999998654
No 72
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.58 E-value=2.1e-07 Score=82.75 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHHhhccCCC
Q 027976 64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD 125 (216)
Q Consensus 64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~AD 125 (216)
+..+++..+...-++.+++|+|+|+|.+ |+.++..|...|+ .|++++|+.+ ++.+.++++|
T Consensus 162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD 240 (311)
T cd05213 162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD 240 (311)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence 3445666666544589999999999886 9999999988775 6999988631 2456678899
Q ss_pred EEEEecCCCCc--ccCC----cccCCcEEEEeeeCCcc
Q 027976 126 IVIAAAGVANL--VRGS----WLKPGAVVLDVGTCPVD 157 (216)
Q Consensus 126 IVIsatg~p~~--i~~~----~i~~g~vViDvg~~~~~ 157 (216)
+||++||.|++ +..+ ...++.+++|++.+++.
T Consensus 241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence 99999998876 1111 12247899999987764
No 73
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.58 E-value=2.4e-07 Score=85.54 Aligned_cols=96 Identities=26% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCE
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADI 126 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADI 126 (216)
|-|--..+-.+++..++.+.|++|+|+|+|.+ |+.++..+...|++|+++.+.. ..+.+.++.+|+
T Consensus 182 ~g~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDV 260 (413)
T cd00401 182 YGCRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDI 260 (413)
T ss_pred chhchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCE
Confidence 33333334445556688899999999999985 9999999999999999986652 134577889999
Q ss_pred EEEecCCCCcccC---CcccCCcEEEEeeeCCc
Q 027976 127 VIAAAGVANLVRG---SWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 127 VIsatg~p~~i~~---~~i~~g~vViDvg~~~~ 156 (216)
||+++|.++.+.. +.+++|.+++.+|..+.
T Consensus 261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~ 293 (413)
T cd00401 261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDV 293 (413)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 9999998876654 45689999999997643
No 74
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.56 E-value=2.9e-07 Score=83.82 Aligned_cols=124 Identities=25% Similarity=0.291 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC---
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV--- 133 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~--- 133 (216)
+.+++|+|+|+|.+ |+.++..|...|++|++++++. .++.+.++++|+||++++.
T Consensus 165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 57789999999875 9999999999999999997642 1345677899999999843
Q ss_pred --CCcccCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHH
Q 027976 134 --ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNT 205 (216)
Q Consensus 134 --p~~i~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~ 205 (216)
|.+++.+++ +++.+|+|+++.+.- ..+ .++ .+..|++.+.. ..-++.-.|+-+ |.|...++.|.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG-----~~e-~~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~ 315 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGG-----CVE-TSR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNA 315 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCCCC-----Ccc-CCc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHH
Confidence 444666664 689999999987631 000 001 12222212111 122333457666 99999999888
Q ss_pred HHHHH
Q 027976 206 LDSAK 210 (216)
Q Consensus 206 ~~a~~ 210 (216)
+..+-
T Consensus 316 l~~~l 320 (370)
T TIGR00518 316 TMPYV 320 (370)
T ss_pred HHHHH
Confidence 76553
No 75
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.46 E-value=7.5e-07 Score=79.71 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHH-hCCC-EEEEEeCCC---------------------CC
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KN 116 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~ 116 (216)
+.+.+.+++...... ....++++|||+|+. |+..+..|. .++. +|++++|+. .+
T Consensus 111 ~RTaa~~~laa~~la--~~~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~ 187 (326)
T TIGR02992 111 VRTAAAGAVAARHLA--REDSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATD 187 (326)
T ss_pred HHHHHHHHHHHHHhC--CCCCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCC
Confidence 344556666655322 235689999999997 999988886 4674 699998862 24
Q ss_pred HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976 117 PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 117 l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~ 154 (216)
+++.+++||+||++|+.+.+ ++.+|+++|+.+..+|.+
T Consensus 188 ~~~av~~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 188 PRAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred HHHHhccCCEEEEecCCCCcEecHHHcCCCcEEEeeCCC
Confidence 56678999999999998776 788999999999999864
No 76
>PLN02494 adenosylhomocysteinase
Probab=98.45 E-value=6.1e-07 Score=83.81 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=72.8
Q ss_pred cHHHHHHHHH-HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEE
Q 027976 63 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVI 128 (216)
Q Consensus 63 Ta~g~~~~L~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVI 128 (216)
|...+++.+. .+++.+.||+++|+|.|.+ |+.+|..+...|++|+++.+... ++.+.++++|+||
T Consensus 236 tgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI 314 (477)
T PLN02494 236 CRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFV 314 (477)
T ss_pred ccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEE
Confidence 3455555554 4577899999999999985 99999999999999999866531 3567788999999
Q ss_pred EecCCCCcccC---CcccCCcEEEEeeeC
Q 027976 129 AAAGVANLVRG---SWLKPGAVVLDVGTC 154 (216)
Q Consensus 129 satg~p~~i~~---~~i~~g~vViDvg~~ 154 (216)
+++|..+.+.. +.++++++++++|..
T Consensus 315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 315 TTTGNKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence 99998877644 456899999999984
No 77
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.43 E-value=6.5e-07 Score=73.29 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=64.6
Q ss_pred HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---C
Q 027976 73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---N 135 (216)
Q Consensus 73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~ 135 (216)
..+.++.||++.|+|.|.+ |+.+|..|...|++|+.+++.. .++.+.+++||+|+...+. + +
T Consensus 29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG 107 (178)
T ss_dssp TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence 3456799999999999986 9999999999999999998863 3678899999999998883 3 3
Q ss_pred cccCCc---ccCCcEEEEeeeCC
Q 027976 136 LVRGSW---LKPGAVVLDVGTCP 155 (216)
Q Consensus 136 ~i~~~~---i~~g~vViDvg~~~ 155 (216)
+++.+. +++|+++|+++-..
T Consensus 108 li~~~~l~~mk~ga~lvN~aRG~ 130 (178)
T PF02826_consen 108 LINAEFLAKMKPGAVLVNVARGE 130 (178)
T ss_dssp SBSHHHHHTSTTTEEEEESSSGG
T ss_pred eeeeeeeeccccceEEEeccchh
Confidence 577665 47899999998654
No 78
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.33 E-value=2.3e-06 Score=76.69 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CC
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KN 116 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~ 116 (216)
+.+.+.|++...... ....++++|||+|+. |+..+..|.. ++. +|++++|+. .+
T Consensus 114 ~rT~a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d 190 (330)
T PRK08291 114 VRTAAAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARD 190 (330)
T ss_pred HHHHHHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCC
Confidence 455567777776422 335689999999997 9988888774 554 699998761 34
Q ss_pred HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976 117 PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 117 l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~ 154 (216)
+.+.+++||+||++|+...+ ++.+|+++|+.|..++.+
T Consensus 191 ~~~al~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d 229 (330)
T PRK08291 191 VHEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD 229 (330)
T ss_pred HHHHHccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence 56778999999999998776 788999999999888765
No 79
>PLN02928 oxidoreductase family protein
Probab=98.30 E-value=2.1e-06 Score=77.58 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=89.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHHhhccCCCEEEEe
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~ADIVIsa 130 (216)
.++.||++.|||.|.+ |+.+|..|...|++|+.+++.. .++.+.+++||+|+.+
T Consensus 155 ~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 155 DTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred cCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 4689999999999986 9999999999999999987641 2467889999999999
Q ss_pred cCC-C---CcccCCc---ccCCcEEEEeeeCCccCCCCC--CCCCCCeEec---ccChHH--------HhhHcceecccC
Q 027976 131 AGV-A---NLVRGSW---LKPGAVVLDVGTCPVDVSVDP--SCEYGYRLMG---DVCYEE--------AMRLASVITPVP 190 (216)
Q Consensus 131 tg~-p---~~i~~~~---i~~g~vViDvg~~~~~~~~~~--~~~~~~~l~G---Dvd~~~--------~~~~~~~~tpvp 190 (216)
++. + +++..+. +|+|+++||++--...++ +. .....+++.| ||-..+ .....-.+||=.
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde-~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi 312 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY-DAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV 312 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH-HHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence 884 2 3566654 478999999986554210 00 0000123322 552111 111234677777
Q ss_pred CcccHHHHHHHHHHHHHHHHHHh
Q 027976 191 GGVGPMTVAMLLSNTLDSAKRAY 213 (216)
Q Consensus 191 gGvGp~T~amLl~n~~~a~~~~~ 213 (216)
+|.-.-+..-+....+...++|.
T Consensus 313 a~~t~~~~~~~~~~~~~nl~~~~ 335 (347)
T PLN02928 313 AGVTEYSYRSMGKIVGDAALQLH 335 (347)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 77665555555566666666664
No 80
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=73.45 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=96.9
Q ss_pred ccEEEEccCCCCC-------CCHHHHHhcCCcccccC----ccCcc-----ccccccccCC------CCcc-CCCcHHHH
Q 027976 11 PCQIIIRIHQLMH-------LDEGKILDAVSLEKDVD----GFHPL-----NIGNLAMRGR------EPLF-IPCTPKGC 67 (216)
Q Consensus 11 ~~Gi~v~~Pl~~~-------~~~~~i~~~i~p~KDvd----g~~~~-----n~g~l~~~~~------~~~~-~p~Ta~g~ 67 (216)
+.|+++..||-+. .-.++++++....++.. |+.-. |+|.-..-.+ +-.- -.-|++++
T Consensus 71 ieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Tayaa 150 (351)
T COG5322 71 IEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYAA 150 (351)
T ss_pred EEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHHH
Confidence 5799999998642 23356677766655532 33111 2222110000 0011 12366664
Q ss_pred ----HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHH-hhcc
Q 027976 68 ----IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPE-QITS 122 (216)
Q Consensus 68 ----~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~-~~~~ 122 (216)
.+...+.+++++...|.|+|+-|.+|.++++.|+.+++.....+|... ++. +++.
T Consensus 151 ~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~ 230 (351)
T COG5322 151 CRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQ 230 (351)
T ss_pred HHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccc
Confidence 444457799999999999999999999999999999988777775420 122 3344
Q ss_pred CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCCcc
Q 027976 123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVD 157 (216)
Q Consensus 123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~~ 157 (216)
++++|.+|+..++. |.+.++|||++++|-+|+.+-
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dv 266 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDV 266 (351)
T ss_pred cceEEEEeecCCCceechhhccCCeEEEcCCcCccc
Confidence 44555588776665 899999999999999998764
No 81
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.21 E-value=5.7e-06 Score=69.17 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCcHHHHHHHHHH----h--CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--------------Hhh
Q 027976 61 PCTPKGCIELLIR----S--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI 120 (216)
Q Consensus 61 p~Ta~g~~~~L~~----~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~~~ 120 (216)
|.|++|+...+++ . +.+++||++.|+|.|. +|+.+++.|.+.|++|++++++.+.+ .+.
T Consensus 3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l 81 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI 81 (200)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence 6788887655543 2 7789999999999997 59999999999999999887753211 122
Q ss_pred c-cCCCEEEEecCCCCcccCCcccC--CcEEEEeeeCCc
Q 027976 121 T-SEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV 156 (216)
Q Consensus 121 ~-~~ADIVIsatg~p~~i~~~~i~~--g~vViDvg~~~~ 156 (216)
. .++|+++.++.. +.++.+.++. ..+|++-+-+|.
T Consensus 82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~ 119 (200)
T cd01075 82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQL 119 (200)
T ss_pred ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCcc
Confidence 2 368999966542 3455554432 456777776653
No 82
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.20 E-value=3.5e-06 Score=74.60 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=71.4
Q ss_pred HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcccC
Q 027976 73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG 139 (216)
Q Consensus 73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i~~ 139 (216)
.+.+-+.||.++|.|.|.. |+..|..|...|+.|+|..... -.+.+.++++||+|++||....|..
T Consensus 207 aTDvM~aGKv~Vv~GYGdV-GKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~ 285 (434)
T KOG1370|consen 207 ATDVMIAGKVAVVCGYGDV-GKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITG 285 (434)
T ss_pred hhhheecccEEEEeccCcc-chhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhH
Confidence 4566689999999999985 9999999999999999986553 2467899999999999999888887
Q ss_pred Ccc---cCCcEEEEeeeCCcc
Q 027976 140 SWL---KPGAVVLDVGTCPVD 157 (216)
Q Consensus 140 ~~i---~~g~vViDvg~~~~~ 157 (216)
++| +++++|+++|+.-.|
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~E 306 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDTE 306 (434)
T ss_pred HHHHhCcCCcEEeccccccce
Confidence 776 678999999987544
No 83
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.18 E-value=9.6e-06 Score=76.71 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCC----------CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------
Q 027976 65 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------- 115 (216)
Q Consensus 65 ~g~~~~L~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------- 115 (216)
.|+++....++. ...+.+|+|+|+|.+ |..++..+...|+.|+++.++..
T Consensus 139 ~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e 217 (511)
T TIGR00561 139 RAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 217 (511)
T ss_pred HHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence 456666655542 245689999999886 99999999999999998855410
Q ss_pred --------------C--------HHhhccCCCEEEEec---CC--CCcccCCcc---cCCcEEEEeeeCC
Q 027976 116 --------------N--------PEQITSEADIVIAAA---GV--ANLVRGSWL---KPGAVVLDVGTCP 155 (216)
Q Consensus 116 --------------~--------l~~~~~~ADIVIsat---g~--p~~i~~~~i---~~g~vViDvg~~~ 155 (216)
+ +.+.++++||||+++ |+ |.+++.+++ |+|.+|+|++..+
T Consensus 218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 0 345678999999999 54 545888775 7899999999864
No 84
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.14 E-value=9.8e-06 Score=74.20 Aligned_cols=144 Identities=21% Similarity=0.247 Sum_probs=95.7
Q ss_pred HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C-----
Q 027976 70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A----- 134 (216)
Q Consensus 70 ~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p----- 134 (216)
+.++.+.++.||++.|||.|.+ |+.++..|...|++|..+++.. .++.+.+++||+|+..++. +
T Consensus 106 l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~ 184 (381)
T PRK00257 106 LAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHP 184 (381)
T ss_pred HhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcccc
Confidence 3345678899999999999885 9999999999999999886531 2578889999999988873 2
Q ss_pred --CcccCCc---ccCCcEEEEeeeCCccCCC---CCCCCCC--CeEecccCh------HHHhhHcceecccCCcccHHHH
Q 027976 135 --NLVRGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYG--YRLMGDVCY------EEAMRLASVITPVPGGVGPMTV 198 (216)
Q Consensus 135 --~~i~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~--~~l~GDvd~------~~~~~~~~~~tpvpgGvGp~T~ 198 (216)
+++..+. +++|+++|+++--...++. +.. .++ ....=||=. ....+..-.+||=.+|...=..
T Consensus 185 T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL-~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 185 TRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL-LSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGK 263 (381)
T ss_pred ccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH-HhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHH
Confidence 3465543 5789999999876543100 000 001 012334421 1122335567887788776655
Q ss_pred HHHHHHHHHHHHHHhCC
Q 027976 199 AMLLSNTLDSAKRAYGF 215 (216)
Q Consensus 199 amLl~n~~~a~~~~~~~ 215 (216)
....+..++.+++|++.
T Consensus 264 ~r~~~~~~~nl~~~~~~ 280 (381)
T PRK00257 264 ARGTAQIYQALCRFFGI 280 (381)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 56666666677777654
No 85
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.13 E-value=9.9e-06 Score=74.09 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=94.3
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C------
Q 027976 71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A------ 134 (216)
Q Consensus 71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p------ 134 (216)
.++.+.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||||+..++. +
T Consensus 107 ~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T 185 (378)
T PRK15438 107 AERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKT 185 (378)
T ss_pred hccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence 345678899999999999886 9999999999999999986421 2588899999999977762 2
Q ss_pred -CcccCCc---ccCCcEEEEeeeCCccCCC---CCCCCCC--CeEecccChH------HHhhHcceecccCCcccHHHHH
Q 027976 135 -NLVRGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYG--YRLMGDVCYE------EAMRLASVITPVPGGVGPMTVA 199 (216)
Q Consensus 135 -~~i~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~--~~l~GDvd~~------~~~~~~~~~tpvpgGvGp~T~a 199 (216)
+++..+. +++|+++|+++--...++. +.. .++ ....=||-.. ...+.....||=.+|...=+..
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL-~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~ 264 (378)
T PRK15438 186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL-NEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKA 264 (378)
T ss_pred ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH-HhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHH
Confidence 2355443 5789999999876643100 000 000 1133344211 1222334778888887765555
Q ss_pred HHHHHHHHHHHHHhCC
Q 027976 200 MLLSNTLDSAKRAYGF 215 (216)
Q Consensus 200 mLl~n~~~a~~~~~~~ 215 (216)
......++++.+|+|.
T Consensus 265 ~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 265 RGTTQVFEAYSKFIGH 280 (378)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5556666666666664
No 86
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.13 E-value=4.9e-06 Score=69.75 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CC-----------------HHhhccCCCEEEEecCCCCc-
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KN-----------------PEQITSEADIVIAAAGVANL- 136 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~-----------------l~~~~~~ADIVIsatg~p~~- 136 (216)
++++||+|+|||+|.. |...+..|.+.|++|+++.+.- +. ....+..+|+||.||+.+..
T Consensus 6 l~l~~k~vLVIGgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKV-AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence 4689999999999885 9988999999999999996542 11 12457889999999998763
Q ss_pred --ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHHH
Q 027976 137 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLD 207 (216)
Q Consensus 137 --i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~~ 207 (216)
+.... +.+. .+++.-.|.. +|+-+...-+ ..-.++ -+|-+|..+..|=++.-.
T Consensus 85 ~~i~~~a-~~~~-lvn~~d~~~~--------------~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 85 EQVKEDL-PENA-LFNVITDAES--------------GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELEA 142 (202)
T ss_pred HHHHHHH-HhCC-cEEECCCCcc--------------CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence 33222 3444 4455444322 2222233211 233444 578899888776554443
No 87
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.13 E-value=8.1e-06 Score=73.35 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC----CcccC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG 139 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p----~~i~~ 139 (216)
.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+.+++.. +.+..
T Consensus 146 ~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 146 YDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 4689999999999886 9999999999999999887642 25678899999999999842 24554
Q ss_pred C---cccCCcEEEEeeeCCc
Q 027976 140 S---WLKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 ~---~i~~g~vViDvg~~~~ 156 (216)
+ .+++|+++||++--..
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~ 244 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKV 244 (333)
T ss_pred HHHhcCCCCeEEEECcCchh
Confidence 3 4588999999987654
No 88
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.12 E-value=1.7e-05 Score=70.99 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p 134 (216)
...++++|||+|+. |+..+..++ .+++ +|++++|+. .++++.+++||+||++|+++
T Consensus 125 ~~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 125 EDAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred CCCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 35789999999997 988777664 4565 599998752 24567788999999999988
Q ss_pred Cc-ccCCcccCCcEEEEeeeCC
Q 027976 135 NL-VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 135 ~~-i~~~~i~~g~vViDvg~~~ 155 (216)
++ +. +|+++|+.|+-+|.+.
T Consensus 204 ~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 TPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred CcchH-HhcCCCcEEEecCCCC
Confidence 87 78 9999999999998753
No 89
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.06 E-value=2.6e-05 Score=69.42 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p 134 (216)
....+++.|||+|.. |++.+..+.. ++ .+|++++|+. .+..+.+++|||||++|+.+
T Consensus 122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 356899999999987 9998875554 45 5799998862 23556788999999999987
Q ss_pred Cc-ccCCcccCCcEEEEeeeC
Q 027976 135 NL-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 135 ~~-i~~~~i~~g~vViDvg~~ 154 (216)
.+ ++.+|+++|+ +||....
T Consensus 201 ~pvl~~~~l~~g~-~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGEWLKPGT-HLDLVGN 220 (314)
T ss_pred CCEecHHHcCCCC-EEEeeCC
Confidence 76 7889999999 5565443
No 90
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.06 E-value=3.2e-05 Score=68.67 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT-------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
....++++|+|+|+. |+..+.++.. ++. +|.+++|+. .++++.+++||+||++|++++
T Consensus 122 ~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 122 PAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 457899999999987 9998888865 564 599998762 246678899999999999988
Q ss_pred cccCCcccCCcEEEEeeeCC
Q 027976 136 LVRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 136 ~i~~~~i~~g~vViDvg~~~ 155 (216)
++-..|++||+.|.-+|.+.
T Consensus 201 Pl~~~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 PVYPEAARAGRLVVAVGAFT 220 (304)
T ss_pred ceeCccCCCCCEEEecCCCC
Confidence 74234899999999998653
No 91
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.05 E-value=1.5e-05 Score=70.93 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C---CcccCCc-
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGSW- 141 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p---~~i~~~~- 141 (216)
.++.||++.|||.|.+ |+.+|.++...|++|..+++.. .++.+.+++||+|+..++. + ++|..+.
T Consensus 141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~ 219 (311)
T PRK08410 141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL 219 (311)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence 3689999999999986 9999999999999998887642 2578899999999988883 3 3566654
Q ss_pred --ccCCcEEEEeeeCCc
Q 027976 142 --LKPGAVVLDVGTCPV 156 (216)
Q Consensus 142 --i~~g~vViDvg~~~~ 156 (216)
+|+++++|+++--..
T Consensus 220 ~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 220 KLLKDGAILINVGRGGI 236 (311)
T ss_pred HhCCCCeEEEECCCccc
Confidence 588999999987654
No 92
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.04 E-value=1.3e-05 Score=71.56 Aligned_cols=136 Identities=20% Similarity=0.216 Sum_probs=87.8
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------CCHHhhccCCCEEEEecCC-C---CcccCCc--
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV-A---NLVRGSW-- 141 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~ADIVIsatg~-p---~~i~~~~-- 141 (216)
.++.||++.|||.|.+ |+.+|..|...|++|...++.. .++.+.+++||+|+...+. + +++..+.
T Consensus 143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~ 221 (314)
T PRK06932 143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA 221 (314)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence 3689999999999986 9999999999999987776532 2578999999999988883 3 3566654
Q ss_pred -ccCCcEEEEeeeCCccCCCCCC--CCCCCeE---ecccChHH-------Hh-----hHcceecccCCcccHHHHHHHHH
Q 027976 142 -LKPGAVVLDVGTCPVDVSVDPS--CEYGYRL---MGDVCYEE-------AM-----RLASVITPVPGGVGPMTVAMLLS 203 (216)
Q Consensus 142 -i~~g~vViDvg~~~~~~~~~~~--~~~~~~l---~GDvd~~~-------~~-----~~~~~~tpvpgGvGp~T~amLl~ 203 (216)
+|+|+++|+++--...++. .. ....+++ .-||-..+ .. ...-.+||=.+|.-.-+..-+..
T Consensus 222 ~mk~ga~lIN~aRG~~Vde~-AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 222 LMKPTAFLINTGRGPLVDEQ-ALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred hCCCCeEEEECCCccccCHH-HHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHH
Confidence 5889999999876543100 00 0000122 23442111 10 12345677777766555555555
Q ss_pred HHHHHHHHHh
Q 027976 204 NTLDSAKRAY 213 (216)
Q Consensus 204 n~~~a~~~~~ 213 (216)
..+...++|+
T Consensus 301 ~~~~ni~~~~ 310 (314)
T PRK06932 301 KVAQNIEEFV 310 (314)
T ss_pred HHHHHHHHHH
Confidence 5565555554
No 93
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.03 E-value=1.5e-05 Score=71.14 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------CCHHhhccCCCEEEEecCC-C---CcccCCc---c
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGV-A---NLVRGSW---L 142 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~~ADIVIsatg~-p---~~i~~~~---i 142 (216)
++.||++.|+|.|.+ |+.+|..|...|++|...++.. .++.+.+++||+|+...+. + +++..+. +
T Consensus 145 ~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~m 223 (317)
T PRK06487 145 ELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALM 223 (317)
T ss_pred ccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcC
Confidence 689999999999986 9999999999999988776542 2578999999999998884 3 3576654 4
Q ss_pred cCCcEEEEeeeCCc
Q 027976 143 KPGAVVLDVGTCPV 156 (216)
Q Consensus 143 ~~g~vViDvg~~~~ 156 (216)
|+|+++|+++--..
T Consensus 224 k~ga~lIN~aRG~v 237 (317)
T PRK06487 224 KPGALLINTARGGL 237 (317)
T ss_pred CCCeEEEECCCccc
Confidence 78999999986654
No 94
>PRK07574 formate dehydrogenase; Provisional
Probab=98.03 E-value=1.4e-05 Score=73.25 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=87.9
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-CC---cc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-AN---LV 137 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p~---~i 137 (216)
.++.||+|.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+...+. +. ++
T Consensus 188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF 266 (385)
T ss_pred eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence 4589999999999986 9999999999999999887652 2567889999999999884 32 45
Q ss_pred cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCe---EecccChHH--------HhhHcceecccCCcccHHHHHH
Q 027976 138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYR---LMGDVCYEE--------AMRLASVITPVPGGVGPMTVAM 200 (216)
Q Consensus 138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~---l~GDvd~~~--------~~~~~~~~tpvpgGvGp~T~am 200 (216)
..+. +|+|+++||++--...++. +.. .+ ++ ...||-+.+ ..-..-.+||=.+|.-.=+...
T Consensus 267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL-~s-G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRAL-ES-GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CHHHHhcCCCCcEEEECCCCchhhHHHHHHHH-Hh-CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHH
Confidence 5544 5889999999866543100 000 00 12 335663221 1111346777777765444444
Q ss_pred HHHHHHHHHHHHh
Q 027976 201 LLSNTLDSAKRAY 213 (216)
Q Consensus 201 Ll~n~~~a~~~~~ 213 (216)
+...++...++|+
T Consensus 345 ~~~~~~~ni~~~~ 357 (385)
T PRK07574 345 YAAGTREILECFF 357 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555554
No 95
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.02 E-value=1.7e-05 Score=70.54 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C---CcccCC--
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS-- 140 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p---~~i~~~-- 140 (216)
.++.||++.|||.|.+ |+.+|..|...|++|..++++. .++.+.+++||+|+...+. + +++..+
T Consensus 118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l 196 (303)
T PRK06436 118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML 196 (303)
T ss_pred CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence 4689999999999886 9999999998999999988742 3578889999999999884 2 245543
Q ss_pred -cccCCcEEEEeeeCCcc
Q 027976 141 -WLKPGAVVLDVGTCPVD 157 (216)
Q Consensus 141 -~i~~g~vViDvg~~~~~ 157 (216)
.+++|+++|+++--...
T Consensus 197 ~~mk~ga~lIN~sRG~~v 214 (303)
T PRK06436 197 SLFRKGLAIINVARADVV 214 (303)
T ss_pred hcCCCCeEEEECCCcccc
Confidence 35889999999876543
No 96
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.01 E-value=1.8e-05 Score=70.64 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-CC---cccC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-AN---LVRG 139 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p~---~i~~ 139 (216)
.+++||++.|||.|.+ |+.+|..|...|++|+..++.. .++.+.+++||+|+...+. +. ++..
T Consensus 132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence 4689999999999986 9999999999999998887542 2577889999999999884 32 3544
Q ss_pred C---cccCCcEEEEeeeCCc
Q 027976 140 S---WLKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 ~---~i~~g~vViDvg~~~~ 156 (216)
+ .+++|+++|+++--..
T Consensus 211 ~~l~~mk~ga~lIN~aRG~v 230 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVH 230 (312)
T ss_pred HHHhcCCCCcEEEECCCccc
Confidence 3 3588999999987654
No 97
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.00 E-value=1.7e-05 Score=71.17 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCCCC----cccCC-
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVAN----LVRGS- 140 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~p~----~i~~~- 140 (216)
.++.|+++.|||.|.+ |+++|..|...|++|+.++++. .++.+.+++||+|+.+++... .+..+
T Consensus 142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~ 220 (330)
T PRK12480 142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM 220 (330)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence 3689999999999886 9999999999999999987652 257788999999999998532 34333
Q ss_pred --cccCCcEEEEeeeCCc
Q 027976 141 --WLKPGAVVLDVGTCPV 156 (216)
Q Consensus 141 --~i~~g~vViDvg~~~~ 156 (216)
.+++|+++|+++--..
T Consensus 221 l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 221 FDHVKKGAILVNAARGAV 238 (330)
T ss_pred HhcCCCCcEEEEcCCccc
Confidence 3578999999986654
No 98
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.98 E-value=8.9e-06 Score=72.24 Aligned_cols=77 Identities=30% Similarity=0.415 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC---
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV--- 133 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~--- 133 (216)
....+|+|||.|- +|.-.|+++...||+|+|...+. .++++.+++||+||.|+=.
T Consensus 166 V~~~kv~iiGGGv-vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGV-VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCcc-ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 4566799999975 59999999999999999996651 2567899999999988733
Q ss_pred --CCcccCCcc---cCCcEEEEeeeCC
Q 027976 134 --ANLVRGSWL---KPGAVVLDVGTCP 155 (216)
Q Consensus 134 --p~~i~~~~i---~~g~vViDvg~~~ 155 (216)
|.+++.+|+ +||.++||+++..
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 556888875 7899999999875
No 99
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.96 E-value=1.8e-05 Score=72.44 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=79.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC------------------------CCHHhhccCCCEEEEecCCCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
++|+|||+|+. |+++|..|++++ .+|++..|+. +.+.+.+++.|+||++.+...
T Consensus 2 ~~ilviGaG~V-g~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 2 MKILVIGAGGV-GSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CcEEEECCchh-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 68999999885 999999999999 7899998861 246688999999999998644
Q ss_pred c--ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCC-cccHHHHHHHHHHHHHHH
Q 027976 136 L--VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 136 ~--i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg-GvGp~T~amLl~n~~~a~ 209 (216)
- +-...++-|.-++|+++.+.. . + +++..+++++... +++ |+-|=-+..+...+++-+
T Consensus 81 ~~~i~ka~i~~gv~yvDts~~~~~----------~-~----~~~~~a~~Agit~-v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 81 DLTILKACIKTGVDYVDTSYYEEP----------P-W----KLDEEAKKAGITA-VLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred hHHHHHHHHHhCCCEEEcccCCch----------h-h----hhhHHHHHcCeEE-EcccCcCcchHHHHHHHHHHHh
Confidence 2 344556778999999987643 1 1 1234446677322 333 666666666666665543
No 100
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.96 E-value=3.2e-05 Score=69.48 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHH-HhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCCCC----cccC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLL-QRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN----LVRG 139 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L-~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~p~----~i~~ 139 (216)
.++.|++|.|||.|.+ |+.+|..| ...|++|+..++.. .++.+.+++||+|+.+++... ++..
T Consensus 142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 142 RSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred ceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence 4689999999999886 99999998 55788988887542 367888999999999988532 3443
Q ss_pred ---CcccCCcEEEEeeeCCc
Q 027976 140 ---SWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 ---~~i~~g~vViDvg~~~~ 156 (216)
+.+++|+++||++--..
T Consensus 221 ~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred HHHhcCCCCcEEEECCCCcc
Confidence 44688999999987654
No 101
>PLN02306 hydroxypyruvate reductase
Probab=97.90 E-value=3.5e-05 Score=70.68 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCC----------------------------CCHHhhccCCCE
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT----------------------------KNPEQITSEADI 126 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t----------------------------~~l~~~~~~ADI 126 (216)
.++.||++.|||.|.+ |+.+|.+|. ..|++|...++.. .++.+.+++||+
T Consensus 161 ~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi 239 (386)
T PLN02306 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV 239 (386)
T ss_pred cCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence 4689999999999986 999999985 8899988775421 267888999999
Q ss_pred EEEecCC-C---CcccCCc---ccCCcEEEEeeeCCc
Q 027976 127 VIAAAGV-A---NLVRGSW---LKPGAVVLDVGTCPV 156 (216)
Q Consensus 127 VIsatg~-p---~~i~~~~---i~~g~vViDvg~~~~ 156 (216)
|+..++. + ++|+.+. +|+|+++|+++--..
T Consensus 240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l 276 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV 276 (386)
T ss_pred EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 9988773 2 3566654 588999999996554
No 102
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.87 E-value=4.3e-05 Score=68.60 Aligned_cols=136 Identities=22% Similarity=0.274 Sum_probs=89.4
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-CC---cc
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-AN---LV 137 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p~---~i 137 (216)
+.++.||++-|||.|.+ |+.++..|...|++|..+++.. .+|.+.+++||+|+.-++. |. ++
T Consensus 137 g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 137 GTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI 215 (324)
T ss_pred cccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhccc
Confidence 45788999999999986 9999999999999999998732 3588999999999988884 32 46
Q ss_pred cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCeEe---cccChHH-------HhhH-cceecccCCcccHHHHHH
Q 027976 138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRLM---GDVCYEE-------AMRL-ASVITPVPGGVGPMTVAM 200 (216)
Q Consensus 138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~---GDvd~~~-------~~~~-~~~~tpvpgGvGp~T~am 200 (216)
..+. +|+|+++|+++--..-+.. +.. .+ +++- =||-.++ +.+. .-.+||=.||.---+...
T Consensus 216 ~~~~~a~MK~gailIN~aRG~vVde~aL~~AL-~~-G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 216 NAEELAKMKPGAILINAARGGVVDEDALLAAL-DS-GKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred CHHHHhhCCCCeEEEECCCcceecHHHHHHHH-Hc-CCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 6554 4789999999866542100 000 00 1111 1222111 1111 234577777776655566
Q ss_pred HHHHHHHHHHHHh
Q 027976 201 LLSNTLDSAKRAY 213 (216)
Q Consensus 201 Ll~n~~~a~~~~~ 213 (216)
+...+++...+|.
T Consensus 294 ~~~~~~~~i~~~l 306 (324)
T COG0111 294 VAEIVAENIVRYL 306 (324)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 103
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.87 E-value=2.6e-05 Score=62.77 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=55.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----c-cc---
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VR--- 138 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~-i~--- 138 (216)
++|-+||.|.+ |++++..|++.|.+|++++++. .+..+.++++|+||++++.+. . ..
T Consensus 2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 57999999886 9999999999999999999873 356788999999999998743 1 22
Q ss_pred CCcccCCcEEEEeeeCCc
Q 027976 139 GSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~~~ 156 (216)
...+++|.++||++....
T Consensus 81 ~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp GGGS-TTEEEEE-SS--H
T ss_pred hhccccceEEEecCCcch
Confidence 244578999999986643
No 104
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.87 E-value=1.1e-05 Score=65.47 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------C------------------------CCH
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------T------------------------KNP 117 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------t------------------------~~l 117 (216)
+...+|+|+|+|.+ |+.++..|...|++|++.+.. + ..+
T Consensus 18 ~~p~~vvv~G~G~v-g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 18 VPPAKVVVTGAGRV-GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp E-T-EEEEESTSHH-HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCeEEEEECCCHH-HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 46689999999875 999999999999999998543 1 125
Q ss_pred HhhccCCCEEEEecC-----CCCcccCCcc---cCCcEEEEeeeCC
Q 027976 118 EQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP 155 (216)
Q Consensus 118 ~~~~~~ADIVIsatg-----~p~~i~~~~i---~~g~vViDvg~~~ 155 (216)
.+.++.+|+||++.- .|.+++.+++ +++.+|+|++...
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 578899999996542 3556888775 6899999999853
No 105
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.87 E-value=2e-05 Score=63.51 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCH--------------HhhccCCCEEEEecCCCCc--cc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP--------------EQITSEADIVIAAAGVANL--VR 138 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l--------------~~~~~~ADIVIsatg~p~~--i~ 138 (216)
++++|++|+|||+|.. |.-.+..|.+.|++|+++...- +++ .+.+.++|+||.||+.+.. .-
T Consensus 9 l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i 87 (157)
T PRK06719 9 FNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMV 87 (157)
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHH
Confidence 5789999999999885 9999999999999999985331 111 2347889999999987652 11
Q ss_pred CCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHHHH
Q 027976 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLDS 208 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~~a 208 (216)
...-+... .+++.-+|.. +|+-+...-+ ..-.++ -+|-+|.....|=++.-..
T Consensus 88 ~~~a~~~~-~vn~~d~~~~--------------~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~~ 143 (157)
T PRK06719 88 KQAAHDFQ-WVNVVSDGTE--------------SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTSI 143 (157)
T ss_pred HHHHHHCC-cEEECCCCCc--------------CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHHH
Confidence 11112333 3444433322 2222222111 123444 5788998888876555443
No 106
>PLN03139 formate dehydrogenase; Provisional
Probab=97.87 E-value=4e-05 Score=70.32 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=88.9
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV 137 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i 137 (216)
.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+...+... ++
T Consensus 195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF 273 (386)
T ss_pred cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence 4689999999999886 9999999999999998887641 267888999999999888422 45
Q ss_pred cCCc---ccCCcEEEEeeeCCccCCCCC--CCCCCCeE---ecccChHHH--------hhHcceecccCCcccHHHHHHH
Q 027976 138 RGSW---LKPGAVVLDVGTCPVDVSVDP--SCEYGYRL---MGDVCYEEA--------MRLASVITPVPGGVGPMTVAML 201 (216)
Q Consensus 138 ~~~~---i~~g~vViDvg~~~~~~~~~~--~~~~~~~l---~GDvd~~~~--------~~~~~~~tpvpgGvGp~T~amL 201 (216)
..+. +++|+++||++--...++. . .....+++ ..||-+++= .-..-.+||=.+|.-.-+...+
T Consensus 274 ~~~~l~~mk~ga~lIN~aRG~iVDe~-AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~ 352 (386)
T PLN03139 274 NKERIAKMKKGVLIVNNARGAIMDTQ-AVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRY 352 (386)
T ss_pred CHHHHhhCCCCeEEEECCCCchhhHH-HHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHH
Confidence 5544 5789999999876543100 0 00000133 456643221 1123467777677554445444
Q ss_pred HHHHHHHHHHHh
Q 027976 202 LSNTLDSAKRAY 213 (216)
Q Consensus 202 l~n~~~a~~~~~ 213 (216)
...++...++|+
T Consensus 353 ~~~~~~nl~~~~ 364 (386)
T PLN03139 353 AAGVKDMLDRYF 364 (386)
T ss_pred HHHHHHHHHHHH
Confidence 555555555654
No 107
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.86 E-value=4.7e-05 Score=68.25 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Ccc
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLV 137 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i 137 (216)
+.++.||++.|||.|.+ |+.+|..|. ..|++|...++.. .++.+.+++||+|+...+. | +++
T Consensus 140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF 218 (323)
T ss_pred cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence 34689999999999986 999999997 8899988776542 2578899999999988883 3 356
Q ss_pred cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCeEec---ccChHH-------H-hhHcceecccCCcccHHHHHH
Q 027976 138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRLMG---DVCYEE-------A-MRLASVITPVPGGVGPMTVAM 200 (216)
Q Consensus 138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~G---Dvd~~~-------~-~~~~~~~tpvpgGvGp~T~am 200 (216)
..+. +|+++++|+++--...++. +.. ..+++.| ||-..+ + .-..-.+||=.||.-.=+..-
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL--~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRGPVVDENALIAAL--QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHH--HcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 6654 4789999999866543100 000 0123433 442111 1 112336677767755444444
Q ss_pred HHHHHHHHHHHHh
Q 027976 201 LLSNTLDSAKRAY 213 (216)
Q Consensus 201 Ll~n~~~a~~~~~ 213 (216)
+..+.+...++|+
T Consensus 297 ~~~~~~~ni~~~~ 309 (323)
T PRK15409 297 MAACAVDNLIDAL 309 (323)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 108
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.81 E-value=2.8e-05 Score=58.11 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCCCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~p~ 135 (216)
++++|++|+|||.|.. |..-+..|++.||+|+++.... +.+++.+..+|+||.|++.+.
T Consensus 3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence 4689999999999885 9888999999999999997661 345577888999999998765
No 109
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.77 E-value=7.6e-05 Score=68.93 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=64.8
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCC-C---CcccCCc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGSW 141 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~-p---~~i~~~~ 141 (216)
.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+...+. + +++..+.
T Consensus 147 ~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~ 225 (409)
T PRK11790 147 FEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEE 225 (409)
T ss_pred ccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHH
Confidence 5689999999999986 9999999999999998887542 2688999999999988874 3 2566544
Q ss_pred ---ccCCcEEEEeeeCC
Q 027976 142 ---LKPGAVVLDVGTCP 155 (216)
Q Consensus 142 ---i~~g~vViDvg~~~ 155 (216)
+|+|+++|+++--.
T Consensus 226 l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 226 LALMKPGAILINASRGT 242 (409)
T ss_pred HhcCCCCeEEEECCCCc
Confidence 57899999998544
No 110
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.76 E-value=0.0001 Score=69.81 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCC----------CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------
Q 027976 65 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------- 115 (216)
Q Consensus 65 ~g~~~~L~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------- 115 (216)
.++++..++++. ...+.+|+|+|+|.+ |..++..+...||+|+++.++..
T Consensus 140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e 218 (509)
T PRK09424 140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEE 218 (509)
T ss_pred HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence 556666665543 246999999999886 99999999999999888855410
Q ss_pred --------------C--------HHhhccCCCEEEEecCCCC-----cccCCc---ccCCcEEEEeeeCC
Q 027976 116 --------------N--------PEQITSEADIVIAAAGVAN-----LVRGSW---LKPGAVVLDVGTCP 155 (216)
Q Consensus 116 --------------~--------l~~~~~~ADIVIsatg~p~-----~i~~~~---i~~g~vViDvg~~~ 155 (216)
+ +.+.++.+|+||+++|.|. .++.++ +++|.+|+|++..+
T Consensus 219 ~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~ 288 (509)
T PRK09424 219 EGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN 288 (509)
T ss_pred ccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence 1 0122367999999999754 445555 47899999999853
No 111
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.74 E-value=9.4e-05 Score=70.39 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=65.5
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCC----Ccc
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVA----NLV 137 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p----~~i 137 (216)
+.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+..++.. +++
T Consensus 133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li 211 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI 211 (525)
T ss_pred ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence 35689999999999986 9999999999999999887631 26888999999999988842 245
Q ss_pred cCCc---ccCCcEEEEeeeCCc
Q 027976 138 RGSW---LKPGAVVLDVGTCPV 156 (216)
Q Consensus 138 ~~~~---i~~g~vViDvg~~~~ 156 (216)
..+. +|+++++||++-...
T Consensus 212 ~~~~l~~mk~ga~lIN~aRG~~ 233 (525)
T TIGR01327 212 GAEELAKMKKGVIIVNCARGGI 233 (525)
T ss_pred CHHHHhcCCCCeEEEEcCCCce
Confidence 4433 578999999987654
No 112
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.74 E-value=8.9e-05 Score=70.55 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=64.9
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC----CcccC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG 139 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p----~~i~~ 139 (216)
.++.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+..++.. +++..
T Consensus 136 ~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 136 VELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence 4589999999999886 9999999999999999887631 15678899999999999853 24654
Q ss_pred Cc---ccCCcEEEEeeeCCc
Q 027976 140 SW---LKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 ~~---i~~g~vViDvg~~~~ 156 (216)
+. +|+++++||++-...
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~ 234 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGI 234 (526)
T ss_pred HHHhcCCCCeEEEECCCCce
Confidence 43 578999999987654
No 113
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.69 E-value=0.00012 Score=64.67 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCHHhhccCCCEEEEecCCCCc------ccCCcccCCcEEEEe
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVANL------VRGSWLKPGAVVLDV 151 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~ADIVIsatg~p~~------i~~~~i~~g~vViDv 151 (216)
.+++|.|||.|.. |.+++..|.+.|.+|++.+|+. .++.+.+++||+||.+++.... +.+..++++.+++|+
T Consensus 3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 4678999999875 9999999999999999998864 5678889999999999987431 112235678899997
Q ss_pred e
Q 027976 152 G 152 (216)
Q Consensus 152 g 152 (216)
.
T Consensus 82 s 82 (308)
T PRK14619 82 T 82 (308)
T ss_pred C
Confidence 5
No 114
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.65 E-value=0.00014 Score=65.37 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCC-C---CcccC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG 139 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~-p---~~i~~ 139 (216)
.+++||++-|||.|.+ |+++|+.+...|++|...++..+ ++.+.+++||+|+-..|. + ++|..
T Consensus 142 ~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 142 FDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred cCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence 5789999999999997 99999999988999988876631 377999999999988773 3 35766
Q ss_pred Cc---ccCCcEEEEeeeCCc
Q 027976 140 SW---LKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 ~~---i~~g~vViDvg~~~~ 156 (216)
+. +|+++++|+++--..
T Consensus 221 ~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 221 EELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHhCCCCeEEEECCCccc
Confidence 54 578999999986654
No 115
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.63 E-value=0.00018 Score=63.43 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=59.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC-----cccCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN-----LVRGS 140 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~-----~i~~~ 140 (216)
.+|..||-|.+ |.|+|..|.+.|.+|++++|+.. +..+..++||+||+.++.+. ++.++
T Consensus 1 ~kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence 36889999986 99999999999999999999832 34578999999999998654 12223
Q ss_pred ----cccCCcEEEEeeeCC
Q 027976 141 ----WLKPGAVVLDVGTCP 155 (216)
Q Consensus 141 ----~i~~g~vViDvg~~~ 155 (216)
..++|.++||++...
T Consensus 80 g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 80 GLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred chhhcCCCCCEEEECCCCC
Confidence 346899999998764
No 116
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.61 E-value=0.0001 Score=61.91 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=47.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-CH-----------------HhhccCCCEEEEecCCCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NP-----------------EQITSEADIVIAAAGVAN 135 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l-----------------~~~~~~ADIVIsatg~p~ 135 (216)
++++||+|+|||.|.. |..-+..|++.||.|+++..... .+ .+.+..+|+||.||+.+.
T Consensus 5 l~l~gk~vlVvGgG~v-a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDV-ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE 81 (205)
T ss_pred EEcCCCeEEEECcCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence 4689999999999885 99889999999999999965421 11 244778999999999763
No 117
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.60 E-value=0.00012 Score=58.57 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=51.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHHhhccCCCEEEEecCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~ADIVIsatg~ 133 (216)
||+|+|+|.. |.++|..|+.+|.+|++..++ +.++++.+++||+||-++++
T Consensus 1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence 6899999987 999999999999999999654 24788999999999999986
Q ss_pred CCc---c--cCCcccCCcEEEEee
Q 027976 134 ANL---V--RGSWLKPGAVVLDVG 152 (216)
Q Consensus 134 p~~---i--~~~~i~~g~vViDvg 152 (216)
... + -..+++++..++-+.
T Consensus 80 ~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred HHHHHHHHHHhhccCCCCEEEEec
Confidence 431 1 123456777776543
No 118
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.58 E-value=0.00018 Score=65.68 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCCeEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCC-CCHHhhccCCCEEEEecCCCC---ccc--CCcccCCcEEEEe
Q 027976 79 MGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDV 151 (216)
Q Consensus 79 ~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~ADIVIsatg~p~---~i~--~~~i~~g~vViDv 151 (216)
..+++.||| .|. +|..++..|.+.|.+|+++++.. .+..+.+++||+||.|++... .+. .. ++++++|+|+
T Consensus 97 ~~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv 174 (374)
T PRK11199 97 DLRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDL 174 (374)
T ss_pred ccceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEEC
Confidence 457899999 666 59999999999999999998754 356677899999999998543 121 12 6789999999
Q ss_pred eeC
Q 027976 152 GTC 154 (216)
Q Consensus 152 g~~ 154 (216)
+..
T Consensus 175 ~Sv 177 (374)
T PRK11199 175 TSV 177 (374)
T ss_pred CCc
Confidence 874
No 119
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.57 E-value=0.00024 Score=63.66 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCCc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL 136 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~~ 136 (216)
.-+++.|||+|.. |+.-+..|.. .. .+|.+++++. .+.++.+++|||||++|++..+
T Consensus 127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P 205 (325)
T TIGR02371 127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP 205 (325)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 4588999999986 9876555543 22 4699987752 2456889999999999997766
Q ss_pred -ccCCcccCCcEEEEeeeC
Q 027976 137 -VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 137 -i~~~~i~~g~vViDvg~~ 154 (216)
+..+|+++|+.|.-+|.+
T Consensus 206 ~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 206 VVKADWVSEGTHINAIGAD 224 (325)
T ss_pred EecHHHcCCCCEEEecCCC
Confidence 789999999999999864
No 120
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.55 E-value=0.00022 Score=62.68 Aligned_cols=92 Identities=13% Similarity=0.274 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------ 113 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------ 113 (216)
+-.|++..++-.+.++++.+++++|+|.+ |..++.+|... |. ++++++++
T Consensus 8 ~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a 86 (279)
T cd05312 8 ALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA 86 (279)
T ss_pred HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH
Confidence 44678999999999999999999999988 99999988765 76 68888654
Q ss_pred --C-----CCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976 114 --T-----KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV 156 (216)
Q Consensus 114 --t-----~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~ 156 (216)
+ .+|.+.++ ++|++|-.++.++.+++++++ +.-+|+=++ ||.
T Consensus 87 ~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt 143 (279)
T cd05312 87 RKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT 143 (279)
T ss_pred hhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence 1 25788888 899999998888889998885 356787777 554
No 121
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00033 Score=62.61 Aligned_cols=76 Identities=9% Similarity=0.160 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhC-C-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCCc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL 136 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~-g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~~ 136 (216)
.-+++.|+|+|.- |+.-+.++..- . -+|++.+|+. .+.++.+++||||+++|++..+
T Consensus 127 d~~~l~iiG~G~q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P 205 (315)
T PRK06823 127 HVSAIGIVGTGIQ-ARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP 205 (315)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc
Confidence 4688999999875 88766665542 3 3699987762 2467889999999999998776
Q ss_pred -ccCCcccCCcEEEEeeeCC
Q 027976 137 -VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 137 -i~~~~i~~g~vViDvg~~~ 155 (216)
++.+|++||+.|.=+|.+.
T Consensus 206 ~~~~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 206 LLQAEDIQPGTHITAVGADS 225 (315)
T ss_pred eeCHHHcCCCcEEEecCCCC
Confidence 7899999999999998643
No 122
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.48 E-value=0.00023 Score=61.79 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-----------EEEEEeCC------------------
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-----------TVSIVHAL------------------ 113 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-----------~Vti~~~~------------------ 113 (216)
+-.|++..++-.+.++++.+++++|+|-+ |..++.+|...+. ++++++++
T Consensus 8 ~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~ 86 (254)
T cd00762 8 AVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA 86 (254)
T ss_pred HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH
Confidence 44678899999999999999999999988 9999998877543 58888654
Q ss_pred --------CCCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976 114 --------TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV 156 (216)
Q Consensus 114 --------t~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~ 156 (216)
..+|.+.++ ++|++|-.++.|+.+++|+++ +.-+|+=++ ||.
T Consensus 87 ~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt 144 (254)
T cd00762 87 RFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT 144 (254)
T ss_pred HHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence 025788888 899999999988889999885 356777777 554
No 123
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.46 E-value=0.00014 Score=52.82 Aligned_cols=70 Identities=29% Similarity=0.340 Sum_probs=51.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhCC---CEEEEE-eCCC---------------C-CHHhhccCCCEEEEecCCCCc--ccC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHH---ATVSIV-HALT---------------K-NPEQITSEADIVIAAAGVANL--VRG 139 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~-~~~t---------------~-~l~~~~~~ADIVIsatg~p~~--i~~ 139 (216)
++.+||.|.+ |.+++..|.+.| .+|+++ +|+. . +..+.+++||+||-++.-..+ +-.
T Consensus 1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 5789999986 999999999999 789855 6652 1 456788899999999985542 222
Q ss_pred --CcccCCcEEEEee
Q 027976 140 --SWLKPGAVVLDVG 152 (216)
Q Consensus 140 --~~i~~g~vViDvg 152 (216)
....++.++||+.
T Consensus 80 ~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 80 EIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHTTSEEEEES
T ss_pred HHhhccCCCEEEEeC
Confidence 2356788898875
No 124
>PRK06046 alanine dehydrogenase; Validated
Probab=97.46 E-value=0.0004 Score=62.14 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
.-+++.|||+|.. |+..+..|.. .+. .|.+++++. .++++.++ +|+|+++|+...
T Consensus 128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence 4578999999997 9988887764 455 488887652 13455665 999999999766
Q ss_pred c-ccCCcccCCcEEEEeeeC
Q 027976 136 L-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 136 ~-i~~~~i~~g~vViDvg~~ 154 (216)
+ +..+|+++|+.|.-+|.+
T Consensus 206 P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 206 PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 6 789999999999999864
No 125
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.44 E-value=0.00047 Score=61.23 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
.-+++.|||+|.- |+.-+.++.. +.. +|.+.+|+. .+.++.+++||||+++|++..
T Consensus 116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 4689999999876 8876666654 343 588887762 246788999999999999877
Q ss_pred c-ccCCcccCCcEEEEeeeCC
Q 027976 136 L-VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 136 ~-i~~~~i~~g~vViDvg~~~ 155 (216)
+ ++.+|++||+.|.=+|.+.
T Consensus 195 P~~~~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 195 PIFNRKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cEecHHHcCCCceEEecCCCC
Confidence 6 7999999999998888654
No 126
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=97.41 E-value=0.00022 Score=61.94 Aligned_cols=92 Identities=14% Similarity=0.244 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------ 113 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------ 113 (216)
|-.|++..++-.+.+|++.+++++|+|-+ |-.++.+|... |. ++++++++
T Consensus 8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a 86 (255)
T PF03949_consen 8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA 86 (255)
T ss_dssp HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence 34678999999999999999999999987 99999888776 86 39999765
Q ss_pred -----C---CCHHhhccCC--CEEEEecCCCCcccCCcccC------CcEEEEeeeCCc
Q 027976 114 -----T---KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV 156 (216)
Q Consensus 114 -----t---~~l~~~~~~A--DIVIsatg~p~~i~~~~i~~------g~vViDvg~~~~ 156 (216)
. .+|.+.++.+ |++|..++.|+.+++|+++. .-+|+=++ ||.
T Consensus 87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt 144 (255)
T PF03949_consen 87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT 144 (255)
T ss_dssp BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence 0 2688999998 99999999999899998853 45777777 554
No 127
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.40 E-value=0.00037 Score=56.63 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGV 133 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~ 133 (216)
|++|+|.|||.|.- |++-|..|.+.|.+|++..+... +..+.+++||+|+..++-
T Consensus 2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD 70 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD 70 (165)
T ss_dssp HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H
T ss_pred cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh
Confidence 58999999999987 99999999999999999987642 467999999999999873
No 128
>PRK12862 malic enzyme; Reviewed
Probab=97.39 E-value=0.00047 Score=68.30 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CC
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TK 115 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~ 115 (216)
.+..|++..++-.+.+++..++++.|+|-+ |.+++.+|...|. ++++|+++ ..
T Consensus 175 v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~ 253 (763)
T PRK12862 175 IVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDAR 253 (763)
T ss_pred HHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccC
Confidence 355778889999999999999999999988 9999999999997 68899643 12
Q ss_pred CHHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976 116 NPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV 156 (216)
Q Consensus 116 ~l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~ 156 (216)
+|.+.++.+|++|-.++ |+.++++|++. .-+|+=++ ||.
T Consensus 254 ~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~ 295 (763)
T PRK12862 254 TLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT 295 (763)
T ss_pred CHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence 57899999999998777 88899999864 67888777 554
No 129
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.00067 Score=63.35 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----CHHhhccCCCEEEEecCCCCcccCCcccCCc
Q 027976 71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----NPEQITSEADIVIAAAGVANLVRGSWLKPGA 146 (216)
Q Consensus 71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~ 146 (216)
|.+++.++++++|+|+|.|++ |+.+|..|+++|++|+++++... .+.+.+++..+-+- +|.... .....+.
T Consensus 7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~-~~~~~~---~~~~~D~ 81 (480)
T PRK01438 7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR-LGPGPT---LPEDTDL 81 (480)
T ss_pred hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE-ECCCcc---ccCCCCE
Confidence 456777889999999999997 99999999999999999986532 12223333332221 110000 0112334
Q ss_pred EEEEeeeCCccCCCCCCCCCCCeEecccChH-HHhhH-c-ceecccCCcccHHHHHHHHHHHHHHH
Q 027976 147 VVLDVGTCPVDVSVDPSCEYGYRLMGDVCYE-EAMRL-A-SVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 147 vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~-~~~~~-~-~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
+|+-.|++|...........+-++.++.++- ...+. . ..+.-|-|=-|.=|+.-|+.+++...
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 4444555443200000001123566666642 11111 0 01112457789999999999888653
No 130
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.36 E-value=0.00034 Score=59.11 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccCCCEEEEecCCCCcc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVANLV 137 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~ADIVIsatg~p~~i 137 (216)
.+++||+|+|||.|.. |.-=+..|++.|++|++..... .-..+.+..+++||.||+.+..
T Consensus 8 ~~l~~k~VlvvGgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~l- 85 (210)
T COG1648 8 LDLEGKKVLVVGGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEEL- 85 (210)
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHH-
Confidence 4689999999999885 8888899999999999884431 1113455669999999987642
Q ss_pred cCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhH---cceecccCCcccHHHHHHHHHHHHHHH
Q 027976 138 RGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 138 ~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~---~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
..... ++-.+.+++.-.|.. +|+-|...-++ .-.++ -||-+|+.+.|+.++.-...
T Consensus 86 n~~i~~~a~~~~i~vNv~D~p~~--------------~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~~l 147 (210)
T COG1648 86 NERIAKAARERRILVNVVDDPEL--------------CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEALL 147 (210)
T ss_pred HHHHHHHHHHhCCceeccCCccc--------------CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHHHc
Confidence 11111 122334444433321 23333332222 23344 57889999998877665443
No 131
>PLN02256 arogenate dehydrogenase
Probab=97.35 E-value=0.001 Score=59.22 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhc-cCCCEEEEecCCCC---ccc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-SEADIVIAAAGVAN---LVR 138 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~-~~ADIVIsatg~p~---~i~ 138 (216)
.+-+++++.|||.|.+ |..++..|.+.|.+|+++++... +..+.+ .++|+||.+++... .+.
T Consensus 32 ~~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~ 110 (304)
T PLN02256 32 EKSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR 110 (304)
T ss_pred ccCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH
Confidence 3457889999999876 99999999999988888876531 233444 46999999998432 122
Q ss_pred ---CCcccCCcEEEEeee
Q 027976 139 ---GSWLKPGAVVLDVGT 153 (216)
Q Consensus 139 ---~~~i~~g~vViDvg~ 153 (216)
...++++++|+|++.
T Consensus 111 ~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 111 SLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred hhhhhccCCCCEEEecCC
Confidence 233678999999997
No 132
>PLN02712 arogenate dehydrogenase
Probab=97.34 E-value=0.00056 Score=66.97 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=60.2
Q ss_pred hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhcc-CCCEEEEecCCCC---c
Q 027976 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITS-EADIVIAAAGVAN---L 136 (216)
Q Consensus 74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~-~ADIVIsatg~p~---~ 136 (216)
.+.++++++|.|||.|.+ |..++..|.+.|.+|+++++... ++.+.+. ++|+||.+++... .
T Consensus 363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 445678999999999886 99999999999999998887632 2334454 5899999998432 1
Q ss_pred c---cCCcccCCcEEEEeeeC
Q 027976 137 V---RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 137 i---~~~~i~~g~vViDvg~~ 154 (216)
+ ....++++++|+|++..
T Consensus 442 i~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCc
Confidence 2 22246789999999764
No 133
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.33 E-value=0.00058 Score=59.72 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=55.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc-cC---
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG--- 139 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i-~~--- 139 (216)
+|.|||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++... .+ ..
T Consensus 1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence 4789999876 9999999999999999998762 245678899999999998542 11 11
Q ss_pred -CcccCCcEEEEeeeC
Q 027976 140 -SWLKPGAVVLDVGTC 154 (216)
Q Consensus 140 -~~i~~g~vViDvg~~ 154 (216)
..++++.+++|++..
T Consensus 80 ~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 80 IEGAKPGKTLVDMSSI 95 (291)
T ss_pred hhcCCCCCEEEECCCC
Confidence 234778999998654
No 134
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.32 E-value=0.00076 Score=59.01 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=57.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc-c---
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R--- 138 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i-~--- 138 (216)
++|.|||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++.+. .+ .
T Consensus 3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47999999876 9999999999999999988752 245677889999999998433 12 1
Q ss_pred -CCcccCCcEEEEeeeCC
Q 027976 139 -GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 139 -~~~i~~g~vViDvg~~~ 155 (216)
...++++.+++|++...
T Consensus 82 ~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 82 IIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HhhcCCCCcEEEECCCCC
Confidence 12357889999997654
No 135
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00066 Score=59.76 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=57.7
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CH-HhhccCCCEEEEecCCCC---cc
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSEADIVIAAAGVAN---LV 137 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l-~~~~~~ADIVIsatg~p~---~i 137 (216)
-++|+|+|.|.+ |+.+++.|..+|..+.++.+... +. .+....||+||-|+|... .+
T Consensus 3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL 81 (279)
T ss_pred CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence 368999999876 99999999999998888865421 12 567778999999999654 22
Q ss_pred ---cCCcccCCcEEEEeeeCC
Q 027976 138 ---RGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 138 ---~~~~i~~g~vViDvg~~~ 155 (216)
.+ .+++|++|.|++..-
T Consensus 82 ~~l~~-~l~~g~iv~Dv~S~K 101 (279)
T COG0287 82 KELAP-HLKKGAIVTDVGSVK 101 (279)
T ss_pred HHhcc-cCCCCCEEEeccccc
Confidence 22 678999999999763
No 136
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=97.31 E-value=0.00094 Score=66.02 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CCC
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TKN 116 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~~ 116 (216)
+..|++..++-.+.+++..++++.|+|-+ |.+++.+|...|. ++++|+++ ..+
T Consensus 168 ~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~ 246 (752)
T PRK07232 168 SAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDART 246 (752)
T ss_pred HHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCC
Confidence 45678888899999999999999999988 9999999999997 69898654 135
Q ss_pred HHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976 117 PEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV 156 (216)
Q Consensus 117 l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~ 156 (216)
|.+.++.+|++|-..+ |+.++++|++. .-+|+=++ ||.
T Consensus 247 l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~ 287 (752)
T PRK07232 247 LAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD 287 (752)
T ss_pred HHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence 8899999999997766 88899999864 67888777 554
No 137
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.00095 Score=60.47 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCC-
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN- 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~- 135 (216)
.-+++.|||+|.- ++.-+.++.. +.. +|++.+|+. .+.++.+++||||+++|++..
T Consensus 128 da~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~ 206 (346)
T PRK07589 128 DSRTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN 206 (346)
T ss_pred CCcEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC
Confidence 3578999999875 8766554443 343 599987762 356788999999999998654
Q ss_pred -c-ccCCcccCCcEEEEeeeCC
Q 027976 136 -L-VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 136 -~-i~~~~i~~g~vViDvg~~~ 155 (216)
+ ++.+|+++|+.|.=+|.+.
T Consensus 207 ~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 207 ATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CceecHHHcCCCcEEEecCCCC
Confidence 4 7899999999988887543
No 138
>PRK12861 malic enzyme; Reviewed
Probab=97.29 E-value=0.00077 Score=66.65 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CCC
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TKN 116 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~~ 116 (216)
+..|++..|+-.+.+++..++++.|+|-+ |.+++.+|...|. ++++|+++ ..+
T Consensus 172 ~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~ 250 (764)
T PRK12861 172 VSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDART 250 (764)
T ss_pred HHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCC
Confidence 45678888999999999999999999988 9999999999997 59999743 135
Q ss_pred HHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976 117 PEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV 156 (216)
Q Consensus 117 l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~ 156 (216)
|.+.++.+|++|-..+ |+.++++|++. .-+|+=++ ||.
T Consensus 251 L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt 291 (764)
T PRK12861 251 LAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT 291 (764)
T ss_pred HHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence 7899999999997765 88899999864 67888777 554
No 139
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.27 E-value=0.00068 Score=59.74 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----ccc-C--
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR-G-- 139 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~-~-- 139 (216)
++|.|||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++... .+. .
T Consensus 2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 37999999886 9999999999999999998762 245667889999999998653 121 1
Q ss_pred --CcccCCcEEEEeeeCCc
Q 027976 140 --SWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 140 --~~i~~g~vViDvg~~~~ 156 (216)
..++++.++||++....
T Consensus 81 i~~~l~~g~lvid~sT~~p 99 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIHP 99 (296)
T ss_pred HhhcCCCCCEEEECCCCCH
Confidence 12567899999986643
No 140
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.24 E-value=0.0012 Score=58.82 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCC-
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN- 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~- 135 (216)
.-+++.|||+|.- |+.-+.+|.. ++. +|.+.+|+. .+.++.+++|||||++|++..
T Consensus 127 ~~~~l~viGaG~Q-A~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~ 205 (313)
T PF02423_consen 127 DARTLGVIGAGVQ-ARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP 205 (313)
T ss_dssp T--EEEEE--SHH-HHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE
T ss_pred CCceEEEECCCHH-HHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC
Confidence 3478999999875 8876666544 454 699998762 357899999999999999877
Q ss_pred -c-ccCCcccCCcEEEEeeeCC
Q 027976 136 -L-VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 136 -~-i~~~~i~~g~vViDvg~~~ 155 (216)
+ ++.+|+++|+.|.-+|...
T Consensus 206 ~P~~~~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 206 APVFDAEWLKPGTHINAIGSYT 227 (313)
T ss_dssp EESB-GGGS-TT-EEEE-S-SS
T ss_pred CccccHHHcCCCcEEEEecCCC
Confidence 5 8999999999999998763
No 141
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.24 E-value=0.0007 Score=60.96 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCC-CC---ccc
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGV-AN---LVR 138 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~-p~---~i~ 138 (216)
.+++||+|.|+|.|.+ |+.+|..|...|+.+.-+.|+.. ++.+.+.++|+||.+-+. +. .+.
T Consensus 158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN 236 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN 236 (336)
T ss_pred ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence 4689999999999997 99999999998865665555421 677889999999988874 32 355
Q ss_pred CC---cccCCcEEEEeeeCCc
Q 027976 139 GS---WLKPGAVVLDVGTCPV 156 (216)
Q Consensus 139 ~~---~i~~g~vViDvg~~~~ 156 (216)
++ ++++|+++++++--..
T Consensus 237 k~~~~~mk~g~vlVN~aRG~i 257 (336)
T KOG0069|consen 237 KKFIEKMKDGAVLVNTARGAI 257 (336)
T ss_pred HHHHHhcCCCeEEEecccccc
Confidence 43 4688999999986543
No 142
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=97.20 E-value=0.0016 Score=62.47 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-----CCC-------EEEEEeCC----------------
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-----HHA-------TVSIVHAL---------------- 113 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-----~ga-------~Vti~~~~---------------- 113 (216)
++-.|++..++-.+.+++..+++++|+|.+ |..+|.+|.. .|. ++++++++
T Consensus 303 V~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~ 381 (581)
T PLN03129 303 VALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKK 381 (581)
T ss_pred HHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHH
Confidence 455778889999999999999999999988 9999998876 465 58888654
Q ss_pred --------CCCHHhhccC--CCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976 114 --------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV 156 (216)
Q Consensus 114 --------t~~l~~~~~~--ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~ 156 (216)
..+|.+.++. +|++|.+++.++.+++++++ +.-+|+=++ ||.
T Consensus 382 ~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt 439 (581)
T PLN03129 382 PFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT 439 (581)
T ss_pred HHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence 0257888888 99999999888889999886 456787777 554
No 143
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.20 E-value=0.00067 Score=57.27 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=56.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhccCCCEEEEecCCCCc--ccC--
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGVANL--VRG-- 139 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~ADIVIsatg~p~~--i~~-- 139 (216)
+++.|+|+|.. |.+++..|+..|.+|++.+|+.+ ...++.+.||+||-|++-+.. +-+
T Consensus 2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 46899999986 99999999999999999977642 345788999999999996543 212
Q ss_pred -CcccCCcEEEEeeeCC
Q 027976 140 -SWLKPGAVVLDVGTCP 155 (216)
Q Consensus 140 -~~i~~g~vViDvg~~~ 155 (216)
+++. |.+|||+. ||
T Consensus 81 ~~~~~-~KIvID~t-np 95 (211)
T COG2085 81 RDALG-GKIVIDAT-NP 95 (211)
T ss_pred HHHhC-CeEEEecC-CC
Confidence 2233 89999987 44
No 144
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=97.15 E-value=0.0063 Score=56.20 Aligned_cols=95 Identities=23% Similarity=0.304 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHh--CCCCCCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC--------
Q 027976 62 CTPKGCIELLIRS--GVEIMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK-------- 115 (216)
Q Consensus 62 ~Ta~g~~~~L~~~--~~~l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~-------- 115 (216)
+.+.-+++.+++. ..+++||+++|.|+ +|.+|+++|..|..+|++|+++++...
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~ 247 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK 247 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence 3455555555433 24689999999999 675699999999999999998865421
Q ss_pred --------C----HHhhccCCCEEEEecCCCCcc----cCCcccCC--cEEEEeeeCCc
Q 027976 116 --------N----PEQITSEADIVIAAAGVANLV----RGSWLKPG--AVVLDVGTCPV 156 (216)
Q Consensus 116 --------~----l~~~~~~ADIVIsatg~p~~i----~~~~i~~g--~vViDvg~~~~ 156 (216)
+ +.+...+.|++|++.+...+- ...-++++ ...+.+.-+|+
T Consensus 248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pd 306 (399)
T PRK05579 248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPD 306 (399)
T ss_pred EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCcH
Confidence 1 123456789999988865442 22335543 36678777764
No 145
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.14 E-value=0.001 Score=58.66 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=56.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR 138 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~---i~ 138 (216)
.++|.|||.|.+ |..++..|.+.|. +|++++++. .+..+.++++|+||.+++.... +.
T Consensus 6 ~~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~ 84 (307)
T PRK07502 6 FDRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred CcEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 368999999875 9999999998884 788887752 2445678899999999986431 11
Q ss_pred --CCcccCCcEEEEeeeC
Q 027976 139 --GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 139 --~~~i~~g~vViDvg~~ 154 (216)
..+++++.+|+|++..
T Consensus 85 ~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 85 EIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHhhCCCCCEEEeCccc
Confidence 2456889999999863
No 146
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.11 E-value=0.0019 Score=59.55 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC------CC-----------------
Q 027976 63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT------KN----------------- 116 (216)
Q Consensus 63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t------~~----------------- 116 (216)
|..|++..|+-.+.+++..++++.|+|-+ |-+++.+|...|. +|++|+|.- ++
T Consensus 182 ~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~ 260 (432)
T COG0281 182 TLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE 260 (432)
T ss_pred HHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcc
Confidence 45678899999999999999999999987 9999999999997 599997751 00
Q ss_pred -H-HhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976 117 -P-EQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV 156 (216)
Q Consensus 117 -l-~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~ 156 (216)
. ...+..+|++|..++. +.++++|++. +-+|+=++ ||.
T Consensus 261 ~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala-NP~ 303 (432)
T COG0281 261 RTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA-NPT 303 (432)
T ss_pred ccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC-CCC
Confidence 0 2356779999988877 7889999864 66787777 554
No 147
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.08 E-value=0.0013 Score=59.02 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCC---cccC-
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN---LVRG- 139 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~---~i~~- 139 (216)
.|+||+|.|||.|.. |+++|..|...|++|++.++.. .++.+.+++||+|+..++.+. .+..
T Consensus 13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 378999999999876 9999999999999999886542 157788999999999888533 2332
Q ss_pred --CcccCCcEE
Q 027976 140 --SWLKPGAVV 148 (216)
Q Consensus 140 --~~i~~g~vV 148 (216)
..+++|+++
T Consensus 92 il~~MK~GaiL 102 (335)
T PRK13403 92 VEENLREGQML 102 (335)
T ss_pred HHhcCCCCCEE
Confidence 335777654
No 148
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.06 E-value=0.0015 Score=51.52 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=44.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEecCCCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
||.|||++|.||..++..|...+. ++.++++.. ...++.+++|||||.+.|.|.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence 799999966789999999999884 688887652 134688999999999998763
No 149
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.06 E-value=0.0013 Score=59.59 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=55.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccCCCEEEEecCCCC---cc--
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN---LV-- 137 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~ADIVIsatg~p~---~i-- 137 (216)
++|.|||.|.+ |.+++..|.+.|..|.+..++. .++.+.+++||+||-+++... .+
T Consensus 1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence 47999999876 9999999999998877776542 234556789999999998543 12
Q ss_pred -cCCcccCCcEEEEeeeCC
Q 027976 138 -RGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 138 -~~~~i~~g~vViDvg~~~ 155 (216)
.+..++++.+|.|++...
T Consensus 80 l~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 80 LADLELKPGVIVTDVGSVK 98 (359)
T ss_pred HhhcCCCCCcEEEeCcccc
Confidence 221367899999998753
No 150
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.04 E-value=0.00073 Score=58.96 Aligned_cols=73 Identities=27% Similarity=0.260 Sum_probs=54.5
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------HHhhccCCCEEEEecCCCCc---cc--CCc
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------PEQITSEADIVIAAAGVANL---VR--GSW 141 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------l~~~~~~ADIVIsatg~p~~---i~--~~~ 141 (216)
+|.|||.|.+ |..++..|.+.|.+|++++++.+. ..+.+++||+||.+++.... +. ...
T Consensus 2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 6899999875 999999999999999999875311 12457889999999985331 11 133
Q ss_pred ccCCcEEEEeeeCC
Q 027976 142 LKPGAVVLDVGTCP 155 (216)
Q Consensus 142 i~~g~vViDvg~~~ 155 (216)
++++.+|.|++.-.
T Consensus 81 l~~~~ii~d~~Svk 94 (279)
T PRK07417 81 LPPEAIVTDVGSVK 94 (279)
T ss_pred CCCCcEEEeCcchH
Confidence 57789999998643
No 151
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.98 E-value=0.0017 Score=59.32 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC---CCHHhhccCCCEEEEecCCCC---ccc---C--CcccCCc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---KNPEQITSEADIVIAAAGVAN---LVR---G--SWLKPGA 146 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---~~l~~~~~~ADIVIsatg~p~---~i~---~--~~i~~g~ 146 (216)
.-.+|+|||..|.+|..++..|.+. +.+|+.+.+.. .++.+.+++||+||-|++... .+. + .++++++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ 82 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence 4568999999444599999999875 67888887643 356778999999999999643 222 1 1378999
Q ss_pred EEEEeeeCC
Q 027976 147 VVLDVGTCP 155 (216)
Q Consensus 147 vViDvg~~~ 155 (216)
+|.|++..-
T Consensus 83 iVtDVgSvK 91 (370)
T PRK08818 83 LWLDVTSIK 91 (370)
T ss_pred EEEECCCCc
Confidence 999999753
No 152
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.002 Score=59.44 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
++++|+|+|+|+|+ +|+++|..|+++|++|+++.+..
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999 59999999999999999998763
No 153
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.95 E-value=0.0022 Score=56.85 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=42.9
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC------------------------CHHhhccCCCEEEEecCCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK------------------------NPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~------------------------~l~~~~~~ADIVIsatg~p 134 (216)
++|.|||+|++ |++++..|+.+|. ++++++++.+ .-.+.+++||+||.++|.|
T Consensus 1 ~kI~IIGaG~v-G~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHV-GSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 47999999885 9999999999993 7999977521 1125578999999999976
Q ss_pred C
Q 027976 135 N 135 (216)
Q Consensus 135 ~ 135 (216)
.
T Consensus 80 ~ 80 (306)
T cd05291 80 Q 80 (306)
T ss_pred C
Confidence 3
No 154
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.94 E-value=0.001 Score=50.82 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=52.6
Q ss_pred eEEEEcCCchhHHHHHHHHHhCC-CE-EEEEeCCC---CCH-------------------HhhccCCCEEEEecCCCC--
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHH-AT-VSIVHALT---KNP-------------------EQITSEADIVIAAAGVAN-- 135 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~g-a~-Vti~~~~t---~~l-------------------~~~~~~ADIVIsatg~p~-- 135 (216)
||.|+|+.|.+|+.++.+|+++- ++ +.++.+.. +.+ .+.+.++|+||.|++...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 68999988999999999998864 45 55554443 111 244689999999998531
Q ss_pred cccCCcccCCcEEEEeeeCCc
Q 027976 136 LVRGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 136 ~i~~~~i~~g~vViDvg~~~~ 156 (216)
.+-+..+++|..|||.+...+
T Consensus 81 ~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHTTSEEEESSSTTT
T ss_pred HHHHHHhhCCcEEEeCCHHHh
Confidence 133444788999999987764
No 155
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.94 E-value=0.0025 Score=54.39 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------HhhccCCCEEEEecCCCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN 135 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~ADIVIsatg~p~ 135 (216)
++++|++|+|||.|.. |.-=+..|++.||+|+|+...- +++ .+.+..+++||.||..+.
T Consensus 21 l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~ 97 (223)
T PRK05562 21 LLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK 97 (223)
T ss_pred EECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH
Confidence 4577999999999886 7665678889999999985431 111 244778999999998764
No 156
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.94 E-value=0.0018 Score=56.70 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=54.2
Q ss_pred EEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----cc--C---Cc
Q 027976 85 VIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--G---SW 141 (216)
Q Consensus 85 ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~--~---~~ 141 (216)
+||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++.+.. +. . ..
T Consensus 1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK 79 (288)
T ss_pred CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence 4789875 9999999999999999998762 3566788999999999987442 11 1 23
Q ss_pred ccCCcEEEEeeeCC
Q 027976 142 LKPGAVVLDVGTCP 155 (216)
Q Consensus 142 i~~g~vViDvg~~~ 155 (216)
++++.++||++...
T Consensus 80 ~~~g~~vid~st~~ 93 (288)
T TIGR01692 80 VAKGSLLIDCSTID 93 (288)
T ss_pred CCCCCEEEECCCCC
Confidence 57789999998554
No 157
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.90 E-value=0.002 Score=59.54 Aligned_cols=74 Identities=27% Similarity=0.332 Sum_probs=54.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhh---------------ccCCCEEEEe
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQI---------------TSEADIVIAA 130 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~---------------~~~ADIVIsa 130 (216)
++|.|||.|-. |.++|..|++.|.+|+.++++.. .+.+. .++||+||.+
T Consensus 4 ~kI~VIGlG~~-G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYI-GLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchh-hHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 68999999875 99999999999999999987632 12222 3379999999
Q ss_pred cCCCC---------ccc------CCcccCCcEEEEeeeCC
Q 027976 131 AGVAN---------LVR------GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 131 tg~p~---------~i~------~~~i~~g~vViDvg~~~ 155 (216)
++.|. .+. ...+++|++||+.+..+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 99761 111 13357788888876643
No 158
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.89 E-value=0.0026 Score=57.36 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC---cccC-
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN---LVRG- 139 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~---~i~~- 139 (216)
++||+|.|||.|.. |+++|..|...|.+|.+..+.. .+..+.+++||+|+.+++... .+..
T Consensus 15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~ 93 (330)
T PRK05479 15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE 93 (330)
T ss_pred hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence 68999999999875 9999999999999988876541 145678899999999998432 1211
Q ss_pred --CcccCCcEE
Q 027976 140 --SWLKPGAVV 148 (216)
Q Consensus 140 --~~i~~g~vV 148 (216)
..++++.+|
T Consensus 94 I~~~Lk~g~iL 104 (330)
T PRK05479 94 IEPNLKEGAAL 104 (330)
T ss_pred HHhcCCCCCEE
Confidence 235667665
No 159
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.89 E-value=0.0031 Score=55.55 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=54.4
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccC---CCEEEEecCCCCc----cc--
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR-- 138 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---ADIVIsatg~p~~----i~-- 138 (216)
++.+||.|.+ |.+++..|++.|.+|++++++. .+..+..++ +|+||.+++.+.. +.
T Consensus 2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 5899999886 9999999999999999998862 244555554 6999999997621 11
Q ss_pred CCcccCCcEEEEeeeC
Q 027976 139 GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~ 154 (216)
...+++|.++||++..
T Consensus 81 ~~~l~~g~ivid~st~ 96 (299)
T PRK12490 81 YPLLSPGDIVVDGGNS 96 (299)
T ss_pred hccCCCCCEEEECCCC
Confidence 1235788999999654
No 160
>PRK13529 malate dehydrogenase; Provisional
Probab=96.88 E-value=0.0031 Score=60.24 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL----------------- 113 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~----------------- 113 (216)
.+-.|++..++-.+.++++.+++++|+|.+ |..+|.+|.. .|. ++++++++
T Consensus 277 V~LAgll~A~r~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~f 355 (563)
T PRK13529 277 VTLAGLLAALKITGEPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPY 355 (563)
T ss_pred HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHH
Confidence 455778889999999999999999999988 9999999876 576 68888654
Q ss_pred ---C------------CCHHhhccCC--CEEEEecCCCCcccCCcccC------CcEEEEeeeCCc
Q 027976 114 ---T------------KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV 156 (216)
Q Consensus 114 ---t------------~~l~~~~~~A--DIVIsatg~p~~i~~~~i~~------g~vViDvg~~~~ 156 (216)
+ .+|.+.++.+ |++|-.++.|+.+++++++. .-+|+=++ ||.
T Consensus 356 a~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt 420 (563)
T PRK13529 356 ARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS-NPT 420 (563)
T ss_pred hhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence 0 2577889888 99999988888889888753 55777776 554
No 161
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.86 E-value=0.0023 Score=59.09 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---HHhhccCCCEEEEecCCCCcccCCccc--CCcEEEEe
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITSEADIVIAAAGVANLVRGSWLK--PGAVVLDV 151 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~~~~~ADIVIsatg~p~~i~~~~i~--~g~vViDv 151 (216)
+++||+++|+|.|+ .|+++|..|+++|++|+++.+.... ..+.++...+-+. .|. ...+.+. .+.+|.--
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~---~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGS---HPLELLDEDFDLMVKNP 76 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCC---CCHHHhcCcCCEEEECC
Confidence 36799999999999 5999999999999999999765311 1122222121111 110 0001111 12333333
Q ss_pred eeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 152 GTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 152 g~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
++++...........+-+++++.++..... ...+.-|-|--|.=|+..|+.+++...
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~-~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 77 GIPYTNPMVEKALEKGIPIITEVELAYLIS-EAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CCCCCCHHHHHHHHCCCcEEeHHHHHHHhc-CCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 333321000000011235677666522211 111223457789999999999888753
No 162
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0052 Score=55.40 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
.-+...|||+|-- ++.-++.+... +. +|.|..|+. .+.++.++.|||||++|+...
T Consensus 129 da~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 129 DASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred CCcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence 3567999999875 88766666543 43 588887762 356789999999999999766
Q ss_pred c-ccCCcccCCcEEEEeeeCC
Q 027976 136 L-VRGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 136 ~-i~~~~i~~g~vViDvg~~~ 155 (216)
+ +..+|+++|+.|.-+|.+.
T Consensus 208 Pil~~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 208 PVLKAEWLKPGTHINAIGADA 228 (330)
T ss_pred CeecHhhcCCCcEEEecCCCC
Confidence 5 8999999999999888654
No 163
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.84 E-value=0.0029 Score=55.33 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=53.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHHhhcc
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS 122 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~ 122 (216)
++|.|||+|-+ |.++|..|++.|.+|++++++. .++.+.++
T Consensus 2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 57999999875 9999999999999999996641 23446788
Q ss_pred CCCEEEEecCCCCccc-------CCcccCCcEE-EEeeeCC
Q 027976 123 EADIVIAAAGVANLVR-------GSWLKPGAVV-LDVGTCP 155 (216)
Q Consensus 123 ~ADIVIsatg~p~~i~-------~~~i~~g~vV-iDvg~~~ 155 (216)
+||+||.+++...-+. .+.+++++++ +|.+.-+
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~ 121 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS 121 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 9999999998653121 1345667654 5666433
No 164
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.83 E-value=0.0029 Score=55.78 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCC----cc-cCC---
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN----LV-RGS--- 140 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~----~i-~~~--- 140 (216)
+|.+||.|.+ |.+++..|.+.|.+|++++++. .+..+..+++|+||.+++.+. .+ ..+
T Consensus 2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 5899999886 9999999999999999987652 234566789999999998543 12 211
Q ss_pred -cccCCcEEEEeeeCC
Q 027976 141 -WLKPGAVVLDVGTCP 155 (216)
Q Consensus 141 -~i~~g~vViDvg~~~ 155 (216)
.+++|.++||++...
T Consensus 81 ~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 81 KASLKGKTIVDMSSIS 96 (292)
T ss_pred ccCCCCCEEEECCCCC
Confidence 246789999998543
No 165
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.82 E-value=0.003 Score=50.61 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=44.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhhccCCCEEEEecCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~~ADIVIsatg~p 134 (216)
|+|+|++|.+|+.++..|+++|++|+.+.|+.. .+.+.++.+|.||.+.|.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 689999888999999999999999999977632 2467788999999998843
No 166
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.81 E-value=0.0035 Score=54.60 Aligned_cols=71 Identities=11% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCC----CEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL--- 136 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~--- 136 (216)
..++.+||.|.+ |.+++..|.+.| .+|++++|+. .+..+.+++||+||.++.....
T Consensus 3 ~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279)
T ss_pred CCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 458999999876 999999999987 5688888742 1334567889999999985432
Q ss_pred cc--CCcccCCcEEEEe
Q 027976 137 VR--GSWLKPGAVVLDV 151 (216)
Q Consensus 137 i~--~~~i~~g~vViDv 151 (216)
+. .+.++++.+|||+
T Consensus 82 l~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 82 LIPFKEYIHNNQLIISL 98 (279)
T ss_pred HHHHHhhcCCCCEEEEE
Confidence 21 1335678899997
No 167
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.80 E-value=0.0028 Score=52.01 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+|.|||+|.+ |+.+|..++..|.+|+++.++
T Consensus 1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECC
Confidence 6899999876 999999999999999999665
No 168
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.79 E-value=0.0034 Score=58.51 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=54.4
Q ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC---ccc--CC
Q 027976 82 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GS 140 (216)
Q Consensus 82 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~---~i~--~~ 140 (216)
++.||| .|. +|.+++..|.+.|.+|+++.++.+ +..+.+.+||+||.+++... .+. ..
T Consensus 2 kI~IIGG~G~-mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~ 80 (437)
T PRK08655 2 KISIIGGTGG-LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP 80 (437)
T ss_pred EEEEEecCCH-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence 689998 455 599999999999999999877531 34566788999999998533 121 23
Q ss_pred cccCCcEEEEeee
Q 027976 141 WLKPGAVVLDVGT 153 (216)
Q Consensus 141 ~i~~g~vViDvg~ 153 (216)
.++++++|+|++.
T Consensus 81 ~l~~~~iViDvsS 93 (437)
T PRK08655 81 HVKEGSLLMDVTS 93 (437)
T ss_pred hCCCCCEEEEccc
Confidence 4678999999996
No 169
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.78 E-value=0.0022 Score=60.08 Aligned_cols=113 Identities=14% Similarity=0.246 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-CCC-----------------HHhhccCCCEEEEecCCCCc-
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-TKN-----------------PEQITSEADIVIAAAGVANL- 136 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-t~~-----------------l~~~~~~ADIVIsatg~p~~- 136 (216)
++++||+|+|||.|.. |.-=+..|++.||+|+|+... +++ ..+.++.+++||.||+.+..
T Consensus 8 ~~l~~~~vlvvGgG~v-A~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n 86 (457)
T PRK10637 8 CQLRDRDCLLVGGGDV-AERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN 86 (457)
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence 5789999999999885 766577888999999998432 111 13457789999999987642
Q ss_pred --ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHH
Q 027976 137 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTL 206 (216)
Q Consensus 137 --i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~ 206 (216)
|... -+...+.+++.-+|.. +|+-|...-+ ..-+++ -+|-.|..+..|-++.-
T Consensus 87 ~~i~~~-a~~~~~lvN~~d~~~~--------------~~f~~pa~~~~g~l~iais--T~G~sP~~a~~lr~~ie 144 (457)
T PRK10637 87 QRVSEA-AEARRIFCNVVDAPKA--------------ASFIMPSIIDRSPLMVAVS--SGGTSPVLARLLREKLE 144 (457)
T ss_pred HHHHHH-HHHcCcEEEECCCccc--------------CeEEEeeEEecCCEEEEEE--CCCCCcHHHHHHHHHHH
Confidence 2111 1222345566655432 2222233211 123344 56888888877654443
No 170
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.77 E-value=0.0028 Score=56.35 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=54.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEecC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAG 132 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsatg 132 (216)
.+|.|||+|.+ |.+++..|++.|.+|++.+|+. .++.+.++++|+||.+++
T Consensus 5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 47999999875 9999999999999999997742 134456788999999998
Q ss_pred CCCccc-CCcccCCcEEEEeee
Q 027976 133 VANLVR-GSWLKPGAVVLDVGT 153 (216)
Q Consensus 133 ~p~~i~-~~~i~~g~vViDvg~ 153 (216)
....-. -+.++++.+++++.-
T Consensus 84 ~~~~~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 84 SKALRETLAGLPRALGYVSCAK 105 (328)
T ss_pred hHHHHHHHHhcCcCCEEEEEee
Confidence 654210 133577888999864
No 171
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.74 E-value=0.0035 Score=54.81 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC----EEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VR 138 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~---i~ 138 (216)
.++.+||.|.+ |.+++..|.+.|. +|++++++. .+..+.+++||+||-++.-... +.
T Consensus 3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence 47999999886 9999999998873 588887652 1334567889999999983221 11
Q ss_pred --CCcccCCcEEEEeee
Q 027976 139 --GSWLKPGAVVLDVGT 153 (216)
Q Consensus 139 --~~~i~~g~vViDvg~ 153 (216)
...++++.+|||+.-
T Consensus 82 ~l~~~~~~~~lvISi~A 98 (272)
T PRK12491 82 QIKDQIKNDVIVVTIAA 98 (272)
T ss_pred HHHHhhcCCcEEEEeCC
Confidence 123567788888853
No 172
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.74 E-value=0.0042 Score=56.96 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-C-CC-EEEEEeCCC-----------------------CCHHhhccCCCEEEEecC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-H-HA-TVSIVHALT-----------------------KNPEQITSEADIVIAAAG 132 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~-ga-~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg 132 (216)
.-+++.|||+|.- |+.-+.+++. + .. +|++.+|+. .+.++.+++||||+++|+
T Consensus 154 da~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 154 DSKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 4578999999986 8887777665 3 23 699987752 235678999999999997
Q ss_pred CCC------c-ccCCcccCCcEEEEeeeC
Q 027976 133 VAN------L-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 133 ~p~------~-i~~~~i~~g~vViDvg~~ 154 (216)
+.. + +..+|+++|+.|.=+|..
T Consensus 233 s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~ 261 (379)
T PRK06199 233 GETGDPSTYPYVKREWVKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCCCcCcEecHHHcCCCcEEecCCcc
Confidence 432 3 789999999988766653
No 173
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.71 E-value=0.0051 Score=58.80 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC----------------
Q 027976 61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL---------------- 113 (216)
Q Consensus 61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~---------------- 113 (216)
-++-.|++..++-.+.+++..+++++|+|.+ |..+|.+|.. .|. ++++++++
T Consensus 278 aV~lAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~ 356 (559)
T PTZ00317 278 AVIAAGFLNALKLSGVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKV 356 (559)
T ss_pred HHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHH
Confidence 3456778899999999999999999999988 9999998873 676 58888543
Q ss_pred -------------CCCHHhhccCC--CEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976 114 -------------TKNPEQITSEA--DIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV 156 (216)
Q Consensus 114 -------------t~~l~~~~~~A--DIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~ 156 (216)
..+|.+.++.+ |++|-+++.|+.+++++++ +.-+|+=++ ||.
T Consensus 357 ~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS-NPt 419 (559)
T PTZ00317 357 PFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS-NPT 419 (559)
T ss_pred HHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence 01577888888 9999999888888888875 355777776 554
No 174
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.68 E-value=0.0033 Score=55.46 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=53.9
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------C---HHhhccCCCEEEEecCCCC---ccc--C
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------N---PEQITSEADIVIAAAGVAN---LVR--G 139 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~---l~~~~~~ADIVIsatg~p~---~i~--~ 139 (216)
+|.+||.|.+ |.+++..|++.|.+|++.+++.. + +.+.++++|+||.+++... .+. .
T Consensus 2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 6899999876 99999999999999999988631 2 2234567899999988652 111 1
Q ss_pred CcccCCcEEEEeeeC
Q 027976 140 SWLKPGAVVLDVGTC 154 (216)
Q Consensus 140 ~~i~~g~vViDvg~~ 154 (216)
..+++|.+|||++..
T Consensus 81 ~~l~~g~ivid~st~ 95 (298)
T TIGR00872 81 PTLEKGDIVIDGGNS 95 (298)
T ss_pred hhCCCCCEEEECCCC
Confidence 346788999998755
No 175
>PRK06398 aldose dehydrogenase; Validated
Probab=96.65 E-value=0.0067 Score=51.63 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 5789999999999889999999999999998887664
No 176
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.63 E-value=0.0056 Score=54.76 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p 134 (216)
++||++.|||.|.. |.+++..|.+.|.+|++..+.. .+..+.+++||+|+.+++-.
T Consensus 1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcH
Confidence 57999999999886 9999999999998876654321 13456789999999999843
No 177
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.63 E-value=0.0043 Score=57.83 Aligned_cols=123 Identities=21% Similarity=0.152 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCCchhHHH-HHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCccc-CCcEEEEeeeCC
Q 027976 78 IMGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP 155 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~~~ 155 (216)
.++|+++|+|.|++ |++ +|++|.++|++|++++.......+.+++..+.+.. |.+ ++.+. .+.+|+--++++
T Consensus 5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~ 78 (461)
T PRK00421 5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD 78 (461)
T ss_pred CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence 46789999999998 999 79999999999999986543222223333333321 211 11221 234555555544
Q ss_pred ccCCCCCCCCCCCeEecccChHH-Hhh--HcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 156 VDVSVDPSCEYGYRLMGDVCYEE-AMR--LASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 156 ~~~~~~~~~~~~~~l~GDvd~~~-~~~--~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
...........+-+++++.++-. ..+ +.-+ |-|=-|.=|+..|+.++++..
T Consensus 79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~---ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIA---VAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEE---EECCCCHHHHHHHHHHHHHhc
Confidence 31000000011236788877632 211 2233 446789999999999998764
No 178
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.004 Score=52.36 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789999999998889999999999999999888765
No 179
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.62 E-value=0.0066 Score=53.51 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=53.6
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccC---CCEEEEecCCCCc----cc--
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR-- 138 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---ADIVIsatg~p~~----i~-- 138 (216)
+|.+||.|.+ |.+++..|++.|.+|++++++. .+..+..+. +|+||.+++.... +.
T Consensus 2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 6899999876 9999999999999999998863 134444443 6999999986531 11
Q ss_pred CCcccCCcEEEEeeeC
Q 027976 139 GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~ 154 (216)
.+.++++.++||++..
T Consensus 81 ~~~l~~g~ivid~st~ 96 (301)
T PRK09599 81 APLLSPGDIVIDGGNS 96 (301)
T ss_pred HhhCCCCCEEEeCCCC
Confidence 1346778999998654
No 180
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.60 E-value=0.0063 Score=53.23 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=51.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHHhhc
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT 121 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------------~~l~~~~ 121 (216)
++|.|||+|-. |.++|..|+..|.+|+++.++. .++.+.+
T Consensus 4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999875 9999999999999999996531 2345678
Q ss_pred cCCCEEEEecCCCCcccC-------CcccCCcEEEEee
Q 027976 122 SEADIVIAAAGVANLVRG-------SWLKPGAVVLDVG 152 (216)
Q Consensus 122 ~~ADIVIsatg~p~~i~~-------~~i~~g~vViDvg 152 (216)
++||+||.|++...-+.. +.+++++++.+..
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 899999999985321111 2345667665543
No 181
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.59 E-value=0.0047 Score=51.70 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.|+.++|+|+|+|+. |..++..|+..|. ++++++.
T Consensus 18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 53 (200)
T TIGR02354 18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF 53 (200)
T ss_pred HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence 367899999999996 9999999999998 6998844
No 182
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.59 E-value=0.0074 Score=51.52 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=44.0
Q ss_pred cCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeC
Q 027976 59 FIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA 112 (216)
Q Consensus 59 ~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~ 112 (216)
..|.|++|+...++ +.+.++++++++|.|.|. ||+.++..|.+.|++|+ ++.+
T Consensus 6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence 46789999876665 456779999999999987 59999999999999966 7765
No 183
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.015 Score=51.67 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976 55 REPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------------- 113 (216)
Q Consensus 55 ~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------------- 113 (216)
.++-+.||-..|=+.-++++.-.++|++++-+|-|+.|+..+....+..|.+++++...
T Consensus 128 LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~ 207 (310)
T COG0078 128 LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGG 207 (310)
T ss_pred cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCC
Confidence 46788999999966666666555999999999999999999999999999999998443
Q ss_pred ----CCCHHhhccCCCEEEEecC
Q 027976 114 ----TKNPEQITSEADIVIAAAG 132 (216)
Q Consensus 114 ----t~~l~~~~~~ADIVIsatg 132 (216)
+.+..++++.||+|.+-+=
T Consensus 208 ~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 208 KITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred eEEEecCHHHHhCCCCEEEecCc
Confidence 3477899999999997664
No 184
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.56 E-value=0.0067 Score=52.15 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=48.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC----EEEEE-eCCC--------------CCHHhhccCCCEEEEecCCCCc----cc
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIV-HALT--------------KNPEQITSEADIVIAAAGVANL----VR 138 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~-~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~ 138 (216)
+|.+||.|.+ |.+++..|.+.|. +|+++ +|+. .+..+.++++|+||.++. |.. +.
T Consensus 2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 5899999876 9999999999887 78888 6642 234566788999999994 431 11
Q ss_pred --CCcccCCcEEEEe
Q 027976 139 --GSWLKPGAVVLDV 151 (216)
Q Consensus 139 --~~~i~~g~vViDv 151 (216)
...++++.+||.+
T Consensus 80 ~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 80 ELRPLLSKDKLLVSV 94 (266)
T ss_pred HHHhhcCCCCEEEEe
Confidence 1234566666655
No 185
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.55 E-value=0.0045 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.+++++|+|+|.|+. |..++..|+..|. ++++++.
T Consensus 18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence 468899999999996 9999999999997 7998854
No 186
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.55 E-value=0.0073 Score=52.45 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=51.6
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc------cc
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL------VR 138 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~------i~ 138 (216)
++.|||.|.+ |.+++..|.+.|. +|+.++++. .+..+ +.++|+||.+++.... +.
T Consensus 2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aD~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEE-LKKCDVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHH-HhcCCEEEEeCcHHHHHHHHHHHh
Confidence 6899999875 9999999999885 677777642 12334 3459999999985431 22
Q ss_pred CCcccCCcEEEEeeeCC
Q 027976 139 GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~~ 155 (216)
. ++++.+|+|++...
T Consensus 80 -~-l~~~~iv~d~gs~k 94 (275)
T PRK08507 80 -D-IKENTTIIDLGSTK 94 (275)
T ss_pred -c-cCCCCEEEECccch
Confidence 2 67899999998753
No 187
>PRK08223 hypothetical protein; Validated
Probab=96.54 E-value=0.006 Score=53.96 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH 111 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~ 111 (216)
.|++++|+|+|+||. |.+++.+|+..|. ++++++
T Consensus 24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD 58 (287)
T PRK08223 24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD 58 (287)
T ss_pred HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence 367899999999996 9999999999996 688883
No 188
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.53 E-value=0.029 Score=50.68 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=57.7
Q ss_pred CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976 57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------------------- 113 (216)
+...||=+.+ ++.+.++.+.+++|++++++|-+ ..|++.++.+++..|++|+++...
T Consensus 132 ~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~ 211 (334)
T PRK01713 132 DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGA 211 (334)
T ss_pred CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC
Confidence 3467888887 45555556557999999999996 447999999999999999988532
Q ss_pred ----CCCHHhhccCCCEEEEe
Q 027976 114 ----TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 ----t~~l~~~~~~ADIVIsa 130 (216)
+.++.+.+++||+|.+-
T Consensus 212 ~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 212 RITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred eEEEEcCHHHHhCCCCEEEEc
Confidence 14567889999999973
No 189
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.52 E-value=0.0077 Score=52.96 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=52.9
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEecCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsatg~ 133 (216)
+|.|||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++.
T Consensus 3 kI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 3 KIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 6999999875 9999999999999999997641 1334566789999999986
Q ss_pred CCc---cc--CCcccCCcEEEEee
Q 027976 134 ANL---VR--GSWLKPGAVVLDVG 152 (216)
Q Consensus 134 p~~---i~--~~~i~~g~vViDvg 152 (216)
... +. ...++++.+++++.
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEe
Confidence 431 11 12456788999984
No 190
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.0073 Score=51.60 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-C---------------------CHHhhccCCCEEEEecCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K---------------------NPEQITSEADIVIAAAGV 133 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~---------------------~l~~~~~~ADIVIsatg~ 133 (216)
.++||+++|.|+++-+|+.++..|+++|++|+++.|+. + ++.+...+.|++|+..|.
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI 89 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence 46899999999998889999999999999988876543 1 122345567888877774
No 191
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.0086 Score=50.57 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998889999999999999998888764
No 192
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.49 E-value=0.0081 Score=49.88 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CH----H---hhccCCCEEEEecCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NP----E---QITSEADIVIAAAGV 133 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l----~---~~~~~ADIVIsatg~ 133 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.++.. |+ . +.....|++|+..|.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~ 77 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI 77 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence 478999999999998999999999999999988876421 11 1 223457999988774
No 193
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.48 E-value=0.0049 Score=53.01 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
+++++|+|+|.||. |..++..|+..|. ++++++.
T Consensus 22 L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 22 LKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEeC
Confidence 67889999999996 9999999999996 6888843
No 194
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.47 E-value=0.009 Score=50.69 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976 67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL 113 (216)
Q Consensus 67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~ 113 (216)
+.+.+++.+.+++|++|+|.|.|. ||+.++..|.++|+. |.++.++
T Consensus 10 ~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 10 MKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred HHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCC
Confidence 444556677889999999999987 599999999999985 7777654
No 195
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.46 E-value=0.0091 Score=54.93 Aligned_cols=71 Identities=28% Similarity=0.335 Sum_probs=52.6
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------------------CHHhhccCCCEE
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------------NPEQITSEADIV 127 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------------~l~~~~~~ADIV 127 (216)
+|.|||.|.+ |.++|..|++.|.+|+.++++.+ +..+.++++|+|
T Consensus 2 kI~vIGlG~~-G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYV-GLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCch-hHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 6899999875 99999999999999999976421 223457889999
Q ss_pred EEecCCCCc---------cc------CCcccCCcEEEEeee
Q 027976 128 IAAAGVANL---------VR------GSWLKPGAVVLDVGT 153 (216)
Q Consensus 128 Isatg~p~~---------i~------~~~i~~g~vViDvg~ 153 (216)
|.+++.|.. +. ...++++.+|+|.+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 999997631 11 123467788888764
No 196
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.44 E-value=0.0059 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.|++++|+|||.|+. |.+++..|+..|. +++++++
T Consensus 21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR 56 (338)
T ss_pred hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence 468899999999985 9999999999997 7888854
No 197
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0073 Score=56.66 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCccc-CCcEEEEeeeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP 155 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~~~ 155 (216)
.+.+|+|+|+|.|++ |++++.+|.+.|++|++++++.....+.+.+..+-+.. |.- ..+++. .+.+|+--++++
T Consensus 12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~---~~~~~~~~d~vV~Spgi~~ 86 (473)
T PRK00141 12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADIS-TAE---ASDQLDSFSLVVTSPGWRP 86 (473)
T ss_pred cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEe-CCC---chhHhcCCCEEEeCCCCCC
Confidence 467899999999998 99999999999999999987532222222222222211 100 012222 234555445544
Q ss_pred ccCCCCCCCCCCCeEecccChHHHhh------HcceecccCCcccHHHHHHHHHHHHHH
Q 027976 156 VDVSVDPSCEYGYRLMGDVCYEEAMR------LASVITPVPGGVGPMTVAMLLSNTLDS 208 (216)
Q Consensus 156 ~~~~~~~~~~~~~~l~GDvd~~~~~~------~~~~~tpvpgGvGp~T~amLl~n~~~a 208 (216)
...........+-++.|++++..... ....+.-|-|=-|.=|+.-|+.++++.
T Consensus 87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~ 145 (473)
T PRK00141 87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE 145 (473)
T ss_pred CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 32000000012336777777532110 011122245778999999999988865
No 198
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.43 E-value=0.015 Score=52.34 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------HH
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE 118 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~ 118 (216)
++|....+...+.+....-.|++|+|.|+|+ +|..++.++...|++|+++....+. +.
T Consensus 164 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~ 242 (360)
T PLN02586 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMK 242 (360)
T ss_pred hhcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHH
Confidence 3444444455555554444799999999976 5999999899999987665332211 11
Q ss_pred hhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976 119 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 119 ~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~ 154 (216)
+....+|++|.++|.+..+ .-+.++++..++.++..
T Consensus 243 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 243 AAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred hhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence 2223469999999865432 23457788778888754
No 199
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.0061 Score=51.75 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999998889999999999999999988765
No 200
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.41 E-value=0.0036 Score=53.13 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEE
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV 110 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~ 110 (216)
.+++++|+|+|.|+. |..++..|+..|. +++++
T Consensus 18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lv 51 (228)
T cd00757 18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLV 51 (228)
T ss_pred HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEE
Confidence 367899999999996 9999999999997 68888
No 201
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.0099 Score=55.43 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.+|+|+|+|.|.. |+++|..|+++|++|+++.+.
T Consensus 12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCC
Confidence 56899999999998 999999999999999999865
No 202
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.36 E-value=0.0043 Score=52.35 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|.+..|+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999999998889999999999999999888765
No 203
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.34 E-value=0.013 Score=52.25 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=44.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC-----------------------CHHhhccCCCEEEEecC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------------------NPEQITSEADIVIAAAG 132 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg 132 (216)
-.+++|.|||+|. ||..++..|+..+. ++.+++++.+ +-.+.+++||+||.+.|
T Consensus 4 ~~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 4 KQHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 3578999999976 69999999998885 5888875421 12367899999999998
Q ss_pred CCC
Q 027976 133 VAN 135 (216)
Q Consensus 133 ~p~ 135 (216)
.|.
T Consensus 83 ~~~ 85 (315)
T PRK00066 83 APQ 85 (315)
T ss_pred CCC
Confidence 753
No 204
>PLN02712 arogenate dehydrogenase
Probab=96.34 E-value=0.0097 Score=58.38 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhc-cCCCEEEEecCCCC---ccc--
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQIT-SEADIVIAAAGVAN---LVR-- 138 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~-~~ADIVIsatg~p~---~i~-- 138 (216)
-+-+++.|||.|.+ |+.++..|.+.|.+|+++++.. .++.+.+ ++||+||-+++... .+.
T Consensus 50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence 34578999999875 9999999999999998887752 1233433 46999999998432 222
Q ss_pred -CCcccCCcEEEEeeeC
Q 027976 139 -GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 139 -~~~i~~g~vViDvg~~ 154 (216)
...++++++|+|++.-
T Consensus 129 ~~~~l~~g~iVvDv~Sv 145 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSV 145 (667)
T ss_pred hhhcCCCCeEEEECCCC
Confidence 2346789999999743
No 205
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.0052 Score=51.76 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+++||+++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 47899999999999999999999999999999987764
No 206
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.32 E-value=0.047 Score=49.28 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC-----------------------
Q 027976 58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL----------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~----------------------- 113 (216)
...||=+.+=+--++++...++|++++++|.+ ..|.++++.++...|++|+++...
T Consensus 133 ~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~ 212 (331)
T PRK02102 133 EWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKI 212 (331)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeE
Confidence 46788888844445444457999999999997 447999999999999999998532
Q ss_pred --CCCHHhhccCCCEEEEe
Q 027976 114 --TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 --t~~l~~~~~~ADIVIsa 130 (216)
+.++.+++++||+|.+-
T Consensus 213 ~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 213 TITEDPEEAVKGADVIYTD 231 (331)
T ss_pred EEEcCHHHHhCCCCEEEEc
Confidence 13567889999999974
No 207
>PLN02342 ornithine carbamoyltransferase
Probab=96.31 E-value=0.049 Score=49.50 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=58.3
Q ss_pred ccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------C
Q 027976 58 LFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------T 114 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------t 114 (216)
...||=+.+ ++.+.++.+ +++|++|+++|-+..+.+.++.++...|++|+++... +
T Consensus 172 ~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 172 YNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred CCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 458888887 444445555 7999999999998889999999999999999998432 2
Q ss_pred CCHHhhccCCCEEEEec
Q 027976 115 KNPEQITSEADIVIAAA 131 (216)
Q Consensus 115 ~~l~~~~~~ADIVIsat 131 (216)
.++.+.+++||+|.+-+
T Consensus 251 ~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 251 NDPAEAVKGADVVYTDV 267 (348)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 45678999999999763
No 208
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.0089 Score=56.32 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.|++|+|+|.|.. |++++.+|..+|++|+++.+.
T Consensus 10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999997 999999999999999998754
No 209
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.30 E-value=0.0055 Score=47.83 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=46.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc------c
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL------V 137 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~------i 137 (216)
.-+|.|||+|.. |..++.+|.+.|..|.-+.+.+ .++.+.+++||++|-+++-... +
T Consensus 10 ~l~I~iIGaGrV-G~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L 88 (127)
T PF10727_consen 10 RLKIGIIGAGRV-GTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL 88 (127)
T ss_dssp --EEEEECTSCC-CCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred ccEEEEECCCHH-HHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence 357999999885 9999999999999877664432 2345778999999999985321 2
Q ss_pred -cCCcccCCcEEEEee
Q 027976 138 -RGSWLKPGAVVLDVG 152 (216)
Q Consensus 138 -~~~~i~~g~vViDvg 152 (216)
....++++.+|+=++
T Consensus 89 a~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HCC--S-TT-EEEES-
T ss_pred HHhccCCCCcEEEECC
Confidence 222356788887765
No 210
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0073 Score=51.38 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=42.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHHhh-ccCCCEEEEecCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQI-TSEADIVIAAAGV 133 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~-~~~ADIVIsatg~ 133 (216)
++++|+|+|.. |+.+|..|.++|.+|++..++. +-|+++ +.+||++|.+||.
T Consensus 1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 57999999985 9999999999999999886652 124444 7889999999986
No 211
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.30 E-value=0.014 Score=50.87 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=44.6
Q ss_pred ccCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976 58 LFIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL 113 (216)
Q Consensus 58 ~~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~ 113 (216)
+--+.|++|+...++ +.+.+++|++|+|-|.|. ||+.++.+|.+.|++|+ |++++
T Consensus 12 gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 12 IRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence 335778888766554 567889999999999987 59999999999999965 77643
No 212
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.30 E-value=0.011 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..+++||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus 173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~ 211 (406)
T PRK07424 173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSN 211 (406)
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346789999999999999999999999999998888664
No 213
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.29 E-value=0.0042 Score=63.49 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCC-CE-------------EEEEeCCC-----------------------CCHHhhc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHH-AT-------------VSIVHALT-----------------------KNPEQIT 121 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~-------------Vti~~~~t-----------------------~~l~~~~ 121 (216)
+.|+|+|||+|.+ |++.+..|++.. ++ |+++.++. +++.+.+
T Consensus 568 ~~~rIlVLGAG~V-G~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRV-CRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECCCHH-HHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 5789999999885 999999998753 33 88886431 1244556
Q ss_pred cCCCEEEEecCCC-Cc-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHH
Q 027976 122 SEADIVIAAAGVA-NL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199 (216)
Q Consensus 122 ~~ADIVIsatg~p-~~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~a 199 (216)
+++|+||++++.. |. +-...++.|.-++|..|...+ . ..+. +.+++++..-=+-=|.-|--..
T Consensus 647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e-----~----~~L~------e~Ak~AGV~~m~e~GlDPGid~ 711 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEE-----M----SALD------SKAKEAGITILCEMGLDPGIDH 711 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHH-----H----HHHH------HHHHHcCCEEEECCccCHHHHH
Confidence 7899999999953 22 455666778778888765432 0 1222 3335555432122257788888
Q ss_pred HHHHHHHHHHH
Q 027976 200 MLLSNTLDSAK 210 (216)
Q Consensus 200 mLl~n~~~a~~ 210 (216)
|+..+.+..++
T Consensus 712 ~lA~~~Id~~~ 722 (1042)
T PLN02819 712 MMAMKMIDDAH 722 (1042)
T ss_pred HHHHHHHHhhc
Confidence 98888887763
No 214
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.29 E-value=0.014 Score=52.52 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCCc---c-c--CCcccCCcE
Q 027976 93 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL---V-R--GSWLKPGAV 147 (216)
Q Consensus 93 g~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~~---i-~--~~~i~~g~v 147 (216)
|+++|..|++.|.+|++.+++. .+..+..+++|+||+.++.+.- + . .+.+++|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI 111 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV 111 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence 7899999999999999997642 2456889999999999997652 2 1 234678999
Q ss_pred EEEeeeCC
Q 027976 148 VLDVGTCP 155 (216)
Q Consensus 148 ViDvg~~~ 155 (216)
|||.+...
T Consensus 112 VID~STIs 119 (341)
T TIGR01724 112 ICNTCTVS 119 (341)
T ss_pred EEECCCCC
Confidence 99998764
No 215
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.28 E-value=0.05 Score=49.06 Aligned_cols=73 Identities=10% Similarity=-0.055 Sum_probs=56.5
Q ss_pred ccCCCcHHHHHHHHHHh-CCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976 58 LFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g~~~~L~~~-~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------- 113 (216)
...||=+.+=+--++++ ...++|++++++|-+ ..|.+.++.+|...|++|+++...
T Consensus 132 ~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~ 211 (332)
T PRK04284 132 EDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGK 211 (332)
T ss_pred CCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCe
Confidence 46788888844444454 347999999999986 457999999999999999988543
Q ss_pred ---CCCHHhhccCCCEEEEe
Q 027976 114 ---TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 ---t~~l~~~~~~ADIVIsa 130 (216)
+.++.+++++||+|.+-
T Consensus 212 ~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 212 ITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred EEEEcCHHHHhCCCCEEEEC
Confidence 13567889999999975
No 216
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.28 E-value=0.029 Score=49.90 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=70.7
Q ss_pred ccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC
Q 027976 11 PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS 89 (216)
Q Consensus 11 ~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g 89 (216)
+|+|.+.-| .|-...++.+.. .+-.+|.|. .+...||=+.+ ++.+.++.+ +++|++|+++|-+
T Consensus 96 ~D~iviR~~--~~~~~~~~a~~s-------~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~ 159 (301)
T TIGR00670 96 SDAIVIRHP--LEGAARLAAEVS-------EVPVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDL 159 (301)
T ss_pred CCEEEEECC--chhHHHHHHhhC-------CCCEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccC
Confidence 666776654 333333332221 234455431 13467998888 444444454 7999999999997
Q ss_pred --chhHHHHHHHHHhCCCEEEEEeCC---------------------CCCHHhhccCCCEEEEe
Q 027976 90 --NIVGLPTSLLLQRHHATVSIVHAL---------------------TKNPEQITSEADIVIAA 130 (216)
Q Consensus 90 --g~vg~~~a~~L~~~ga~Vti~~~~---------------------t~~l~~~~~~ADIVIsa 130 (216)
+.|.+.++.+++..|++|++++.. +.++.++++.||+|.+-
T Consensus 160 ~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 160 KYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 567999999999999999999543 24567889999998874
No 217
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.27 E-value=0.0033 Score=57.07 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=67.8
Q ss_pred EEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
|+|+|+ |.+|+.++..|++++- +|++..|+. ++|.+.++++|+||+++|...
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence 689999 5569999999998873 789887752 136788999999999998541
Q ss_pred -c-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccC-CcccHHHHHHHHHHHHHHHH
Q 027976 136 -L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP-GGVGPMTVAMLLSNTLDSAK 210 (216)
Q Consensus 136 -~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp-gGvGp~T~amLl~n~~~a~~ 210 (216)
. +-...++.|.-.+|.++-... . .++- +.+ ++++... ++ =|.-|--..+|...+++.+.
T Consensus 80 ~~~v~~~~i~~g~~yvD~~~~~~~-----~----~~l~-----~~a-~~~g~~~-l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 80 GEPVARACIEAGVHYVDTSYVTEE-----M----LALD-----EEA-KEAGVTA-LPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp HHHHHHHHHHHT-EEEESS-HHHH-----H----HHCH-----HHH-HHTTSEE-E-S-BTTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeeccchhHHH-----H----HHHH-----HHH-HhhCCEE-EeCcccccchHHHHHHHHHHHhh
Confidence 1 333445668889996651111 0 0111 333 3334322 22 27778888888888877654
No 218
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.27 E-value=0.029 Score=50.05 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=58.7
Q ss_pred CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC------------CCCHHhhc
Q 027976 57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL------------TKNPEQIT 121 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~------------t~~l~~~~ 121 (216)
+...||=+.+ ++.+.++.+ +++|++|+++|-+ +.+.+.++.+++..|+++++++.. +.++.+++
T Consensus 133 ~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~ 211 (305)
T PRK00856 133 SHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVI 211 (305)
T ss_pred CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHh
Confidence 3467988888 555555555 6999999999986 567999999999999999998643 24678899
Q ss_pred cCCCEEEEec
Q 027976 122 SEADIVIAAA 131 (216)
Q Consensus 122 ~~ADIVIsat 131 (216)
++||+|++..
T Consensus 212 ~~aDvvyt~~ 221 (305)
T PRK00856 212 EDADVVMMLR 221 (305)
T ss_pred CCCCEEEECC
Confidence 9999998754
No 219
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.27 E-value=0.012 Score=50.86 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=41.9
Q ss_pred EEEEcCCchhHHHHHHHHHhCC----CEEEEEeCC-------------------------CCCHHhhccCCCEEEEecCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHH----ATVSIVHAL-------------------------TKNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~-------------------------t~~l~~~~~~ADIVIsatg~ 133 (216)
+.|||+||.+|..++..|+..+ .++++.+.+ +.++++.+++||+||.+.|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 5799997778999999998888 578887543 13457889999999998886
Q ss_pred CC
Q 027976 134 AN 135 (216)
Q Consensus 134 p~ 135 (216)
|.
T Consensus 81 ~~ 82 (263)
T cd00650 81 GR 82 (263)
T ss_pred CC
Confidence 53
No 220
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.26 E-value=0.0084 Score=51.65 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH 111 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~ 111 (216)
.|+.++|+|+|.|+. |..++..|+..|. ++++++
T Consensus 29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD 63 (245)
T PRK05690 29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD 63 (245)
T ss_pred HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence 468899999999986 9999999999996 688883
No 221
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.01 Score=51.83 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=35.2
Q ss_pred hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
....++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3456789999999998888999999999999999988765
No 222
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.25 E-value=0.018 Score=51.45 Aligned_cols=56 Identities=23% Similarity=0.443 Sum_probs=43.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHHhhccCCCEEEEe
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~ADIVIsa 130 (216)
.+.++|.|||+|. +|..++..|+..| +++.+++.+. .++ +.+++||+||.+
T Consensus 3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit 80 (319)
T PTZ00117 3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT 80 (319)
T ss_pred CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence 4678999999966 5999999999888 6787775531 233 478999999999
Q ss_pred cCCCC
Q 027976 131 AGVAN 135 (216)
Q Consensus 131 tg~p~ 135 (216)
.|.|.
T Consensus 81 ag~~~ 85 (319)
T PTZ00117 81 AGVQR 85 (319)
T ss_pred CCCCC
Confidence 97643
No 223
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.0074 Score=49.80 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
.++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 36799999999999999999999999999998887753
No 224
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.24 E-value=0.0064 Score=50.22 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=35.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI 126 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI 126 (216)
.+|.|+|.|-. |.++|..|++.|.+|+-+..+. .+..+.+++||+
T Consensus 1 M~I~ViGlGyv-Gl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYV-GLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp -EEEEE--STT-HHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred CEEEEECCCcc-hHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 47999999875 9999999999999999995431 234566888898
Q ss_pred EEEecCCC
Q 027976 127 VIAAAGVA 134 (216)
Q Consensus 127 VIsatg~p 134 (216)
+|-++|.|
T Consensus 80 ~~I~VpTP 87 (185)
T PF03721_consen 80 VFICVPTP 87 (185)
T ss_dssp EEE----E
T ss_pred EEEecCCC
Confidence 88888765
No 225
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.24 E-value=0.033 Score=49.80 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=57.8
Q ss_pred ccCCCcHHH-HHHHHHHhCC-CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976 58 LFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------- 113 (216)
...||=+.+ ++.+.++.+. +++|++++++|.++.|.+.++.++...|++|+++...
T Consensus 129 ~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~ 208 (311)
T PRK14804 129 MFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSW 208 (311)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEE
Confidence 468998888 4444455553 6899999999998888999999999999999988642
Q ss_pred CCCHHhhccCCCEEEEe
Q 027976 114 TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 t~~l~~~~~~ADIVIsa 130 (216)
+.++.+.+++||+|.+-
T Consensus 209 ~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 209 EMNLHKAVSHADYVYTD 225 (311)
T ss_pred EeCHHHHhCCCCEEEee
Confidence 13567888999999873
No 226
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.22 E-value=0.006 Score=51.43 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 5789999999999999999999999999999888765
No 227
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.22 E-value=0.03 Score=46.66 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~ 113 (216)
.+++++|+|+|+|+. |..++..|+..|. ++++++..
T Consensus 18 ~L~~s~VlIiG~ggl-G~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGL-GAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHH-HHHHHHHHHHcCCCEEEEEECC
Confidence 367899999999995 9999999999997 59999543
No 228
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.21 E-value=0.033 Score=49.81 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=71.8
Q ss_pred CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 027976 10 MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS 89 (216)
Q Consensus 10 ~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g 89 (216)
++++|.+.-| .+-...++.+.+ ..+-++|.| ..+...||=+.+=+--++++...++|.+++++|-+
T Consensus 101 ~~D~iv~R~~--~~~~~~~~a~~~------~~vPvINag------~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~ 166 (310)
T PRK13814 101 GVYFFIVRHS--ENETPEQIAKQL------SSGVVINAG------DGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDI 166 (310)
T ss_pred CCCEEEEeCC--chhHHHHHHHhC------CCCCeEECC------cCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCC
Confidence 3566666644 333333332222 123455653 24566899888844444444447999999999996
Q ss_pred --chhHHHHHHHHHhCCC-EEEEEeCC--------------CCCHHhhccCCCEEEE
Q 027976 90 --NIVGLPTSLLLQRHHA-TVSIVHAL--------------TKNPEQITSEADIVIA 129 (216)
Q Consensus 90 --g~vg~~~a~~L~~~ga-~Vti~~~~--------------t~~l~~~~~~ADIVIs 129 (216)
+.+++.++.+++..|. +++++... +.++.+++++||+|.+
T Consensus 167 ~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 167 RHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 5679999999999998 89888543 2467899999999986
No 229
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.21 E-value=0.0061 Score=51.37 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=34.7
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..++||+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 45789999999999999999999999999999988775
No 230
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.20 E-value=0.014 Score=51.24 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=28.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|.+ |.++|..|+..|..|++.++.
T Consensus 6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECC
Confidence 48999999875 999999999999999999665
No 231
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.20 E-value=0.057 Score=48.82 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=57.1
Q ss_pred CccCCCcHHH-HHHHHHHhC-CCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC--------------------
Q 027976 57 PLFIPCTPKG-CIELLIRSG-VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~-~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------- 113 (216)
+...||=+.+ ++.+.++.+ .+++|.+++.+|-+ ..|.+.++.+++..|++++++...
T Consensus 131 ~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g 210 (336)
T PRK03515 131 NEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNG 210 (336)
T ss_pred CCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC
Confidence 3568988888 555555554 37999999999986 347999999999999999988532
Q ss_pred -----CCCHHhhccCCCEEEEe
Q 027976 114 -----TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 -----t~~l~~~~~~ADIVIsa 130 (216)
+.++.+.+++||+|.+-
T Consensus 211 ~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 211 GNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CeEEEEcCHHHHhCCCCEEEec
Confidence 14567889999999975
No 232
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.19 E-value=0.0091 Score=52.31 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=51.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-------------------------------------HHhhccC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------------------------PEQITSE 123 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------------------------------l~~~~~~ 123 (216)
++|.|||.|.+ |.++|..|+..|.+|++++++.+. -.+.+++
T Consensus 5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 68999999876 999999999999999999764211 1145788
Q ss_pred CCEEEEecCC-CCc----cc--CCcccCCcEEE-EeeeC
Q 027976 124 ADIVIAAAGV-ANL----VR--GSWLKPGAVVL-DVGTC 154 (216)
Q Consensus 124 ADIVIsatg~-p~~----i~--~~~i~~g~vVi-Dvg~~ 154 (216)
||+||.++.- +.. +. .+.++++++++ +.+.-
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 9999999873 221 11 13456676665 55443
No 233
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.19 E-value=0.014 Score=51.48 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=42.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHHhhccCCCEE
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQITSEADIV 127 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~~~ADIV 127 (216)
++|.|||+|.+ |.+++..|++.|.+|++++++. .++.+.+++||+|
T Consensus 5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 67999999875 9999999999999999987532 1233557889999
Q ss_pred EEecCCC
Q 027976 128 IAAAGVA 134 (216)
Q Consensus 128 Isatg~p 134 (216)
|.+++..
T Consensus 84 i~av~~~ 90 (311)
T PRK06130 84 IEAVPEK 90 (311)
T ss_pred EEeccCc
Confidence 9999754
No 234
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.17 E-value=0.01 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence 5789999999998889999999999999998887664
No 235
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.17 E-value=0.015 Score=52.26 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=54.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHHhhccCCCEEEEecC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG 132 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~ADIVIsatg 132 (216)
++|.|+|+|.. |.++|..|++.|..|++-.|+ +.|+.+.++.||+|+-+++
T Consensus 2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 57999999887 999999999999888887442 2478899999999999998
Q ss_pred CCCc---cc--CCcccCCcEEEEee
Q 027976 133 VANL---VR--GSWLKPGAVVLDVG 152 (216)
Q Consensus 133 ~p~~---i~--~~~i~~g~vViDvg 152 (216)
+..+ ++ ...++++..++-+.
T Consensus 81 s~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 81 SQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred hHHHHHHHHHHhhhccCCCeEEEEe
Confidence 7432 11 14456677676664
No 236
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.17 E-value=0.019 Score=48.70 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999998889999999999999998887654
No 237
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.16 E-value=0.0071 Score=50.45 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
++++++++|+|+++.+|+.++..|+++|++|++..|+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46889999999999899999999999999999887764
No 238
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.0061 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998888999999999999999988764
No 239
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.15 E-value=0.0099 Score=52.05 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|.+ |.+++..|+..|.+|++++++
T Consensus 4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence 68999999875 999999999999999999765
No 240
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.007 Score=50.89 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~ 40 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRD 40 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999999999999998888775
No 241
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.13 E-value=0.018 Score=51.69 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=43.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHHhhccCCCE
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADI 126 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~ADI 126 (216)
++|.|||+|-+ |..+|..++..|.+|++.++. +.++.+.+.+||+
T Consensus 8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999999865 999999999999999999653 1245577899999
Q ss_pred EEEecCC
Q 027976 127 VIAAAGV 133 (216)
Q Consensus 127 VIsatg~ 133 (216)
||.+++-
T Consensus 87 ViEavpE 93 (321)
T PRK07066 87 IQESAPE 93 (321)
T ss_pred EEECCcC
Confidence 9999874
No 242
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.12 E-value=0.022 Score=51.01 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=43.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHHhhccCCCEEEEe
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~ADIVIsa 130 (216)
++.++|.|||+|. +|..++..++..| +++.+.+.+. .++ +.+++||+||.+
T Consensus 4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 3557999999977 5999999999888 4777775432 233 678999999999
Q ss_pred cCCCC
Q 027976 131 AGVAN 135 (216)
Q Consensus 131 tg~p~ 135 (216)
.|.|.
T Consensus 82 ag~~~ 86 (321)
T PTZ00082 82 AGLTK 86 (321)
T ss_pred CCCCC
Confidence 88653
No 243
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.10 E-value=0.0097 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.+++++|+|+|+||. |..++..|+..|. ++++++.
T Consensus 132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~ 167 (376)
T PRK08762 132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH 167 (376)
T ss_pred HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 378999999999996 9999999999997 6888854
No 244
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.0085 Score=50.82 Aligned_cols=38 Identities=37% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||.++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 46789999999999989999999999999999888765
No 245
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.09 E-value=0.013 Score=49.50 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.++.++|+|+|+|+. |..++..|+..|. ++++++.
T Consensus 25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 367899999999996 9999999999997 5888844
No 246
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.08 E-value=0.0079 Score=46.64 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~ 113 (216)
.++|+|+|.|+. |..++..|+..|. ++++++..
T Consensus 2 ~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHH-HHHHHHHHHHhCCCceeecCCc
Confidence 579999999986 9999999999997 69999543
No 247
>PLN02858 fructose-bisphosphate aldolase
Probab=96.07 E-value=0.012 Score=62.07 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG 139 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~ 139 (216)
..++|-+||-|.+ |.++|..|++.|.+|++.+++. .+..+..++||+||+.++.+.- + ..
T Consensus 3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~ 81 (1378)
T PLN02858 3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD 81 (1378)
T ss_pred CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence 4578999999886 9999999999999999998873 2566788899999999986542 1 11
Q ss_pred ----CcccCCcEEEEeeeCC
Q 027976 140 ----SWLKPGAVVLDVGTCP 155 (216)
Q Consensus 140 ----~~i~~g~vViDvg~~~ 155 (216)
+.+++|.++||++...
T Consensus 82 ~g~~~~l~~g~iivd~STi~ 101 (1378)
T PLN02858 82 EGAAKGLQKGAVILIRSTIL 101 (1378)
T ss_pred hhHHhcCCCcCEEEECCCCC
Confidence 2246889999998653
No 248
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.0077 Score=50.82 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4789999999998888999999999999999888765
No 249
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=96.07 E-value=0.071 Score=47.46 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=69.4
Q ss_pred ccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCc
Q 027976 11 PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSN 90 (216)
Q Consensus 11 ~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg 90 (216)
+|+|.+.-| .+-....+.+.. .+-.+|.| .+...||=+.+=+--++++..+++|++++++|-+.
T Consensus 94 ~D~iviR~~--~~~~~~~~a~~~-------~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~ 157 (302)
T PRK14805 94 ADAIVARVF--SHSTIEQLAEHG-------SVPVINAL-------CDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGN 157 (302)
T ss_pred CCEEEEeCC--ChhHHHHHHHhC-------CCCEEECC-------CCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCC
Confidence 677777655 333223322221 23455653 23467888888444444443479999999999988
Q ss_pred hhHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHHhhccCCCEEEEec
Q 027976 91 IVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAAA 131 (216)
Q Consensus 91 ~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~ADIVIsat 131 (216)
.|.+.++.+++..|++|+++.... .++ +.+++||+|.+-+
T Consensus 158 ~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 158 NVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred ccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 899999999999999999995321 232 5688999998744
No 250
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.07 E-value=0.015 Score=51.25 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG 132 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg 132 (216)
+|+|+|++|.+|+.++..|.++|.+|+.+.|+. .++.+.++.+|+||++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 699999999999999999999999998887642 124567788899998765
No 251
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.06 E-value=0.016 Score=49.12 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
...+++++|+|++|.+|+.++..|+++|++|+.+.|+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 4568999999998888999999999999998876553
No 252
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.05 E-value=0.083 Score=47.76 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=56.5
Q ss_pred ccCCCcHHH-HHHHHHHhCC-CCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976 58 LFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~~~-~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------------------- 113 (216)
...||=+.+ ++.+.++.+. .++|.+++++|-+ ..|.++++.+++..|++|+++...
T Consensus 132 ~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~ 211 (334)
T PRK12562 132 EFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGG 211 (334)
T ss_pred CCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC
Confidence 457887777 4444455543 5899999999985 347999999999999999988532
Q ss_pred ----CCCHHhhccCCCEEEEec
Q 027976 114 ----TKNPEQITSEADIVIAAA 131 (216)
Q Consensus 114 ----t~~l~~~~~~ADIVIsat 131 (216)
+.++.+.+++||+|.+-.
T Consensus 212 ~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 212 KITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred eEEEEcCHHHHhCCCCEEEEcC
Confidence 145678899999999754
No 253
>PLN02477 glutamate dehydrogenase
Probab=96.04 E-value=0.019 Score=53.25 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976 60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL 113 (216)
Q Consensus 60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~ 113 (216)
.+.|++|+...+ ++.+.+++|++|+|.|.|. ||+.++..|.++|++|+ |+.++
T Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 182 EAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence 467999876555 4567899999999999987 59999999999999966 77654
No 254
>PRK05717 oxidoreductase; Validated
Probab=96.03 E-value=0.0096 Score=50.29 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=34.5
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
...++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 456899999999999889999999999999998887543
No 255
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.03 E-value=0.021 Score=47.95 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.4
Q ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHHhhccCCCEEEEecCCCC
Q 027976 82 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 82 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg~p~ 135 (216)
++.||| .|. +|.+++..|++.|.+|++..|+.+ +..+.++++|+||.+++...
T Consensus 2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 689998 565 599999999999999988876531 22356778999999998653
Q ss_pred c---cc--CCcccCCcEEEEe
Q 027976 136 L---VR--GSWLKPGAVVLDV 151 (216)
Q Consensus 136 ~---i~--~~~i~~g~vViDv 151 (216)
. +. ...++ +.+|||+
T Consensus 81 ~~~~l~~l~~~l~-~~vvI~~ 100 (219)
T TIGR01915 81 VLKTLESLRDELS-GKLVISP 100 (219)
T ss_pred HHHHHHHHHHhcc-CCEEEEe
Confidence 2 11 11233 4788887
No 256
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.03 E-value=0.017 Score=51.06 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=43.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHHhhcc
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS 122 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~ 122 (216)
++|.|||+|- +|.+++..|+++|.+|++++++. .++.+.++
T Consensus 3 ~~V~VIG~G~-mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGL-IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccH-HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4799999876 49999999999999999997652 13445678
Q ss_pred CCCEEEEecCCC
Q 027976 123 EADIVIAAAGVA 134 (216)
Q Consensus 123 ~ADIVIsatg~p 134 (216)
++|+||.+++..
T Consensus 82 ~ad~Vi~avpe~ 93 (308)
T PRK06129 82 DADYVQESAPEN 93 (308)
T ss_pred CCCEEEECCcCC
Confidence 999999998754
No 257
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.0086 Score=50.66 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999889999999999999999888764
No 258
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.03 E-value=0.0084 Score=53.88 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-HhhccCCCEEEEecCCCCc--cc
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVANL--VR 138 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~ADIVIsatg~p~~--i~ 138 (216)
+.+|.|+|++|.+|+-++++|.+++. ++....+.. .++ ...++++|+||.|+|.... +-
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 36899999999999999999999764 344443321 011 1234689999999985421 22
Q ss_pred CCcccCCcEEEEeeeCCc
Q 027976 139 GSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 139 ~~~i~~g~vViDvg~~~~ 156 (216)
+..++.|++|||++..+.
T Consensus 81 ~~~~~~G~~VIDlS~~~R 98 (334)
T PRK14874 81 PKAAAAGAVVIDNSSAFR 98 (334)
T ss_pred HHHHhCCCEEEECCchhh
Confidence 334567899999987654
No 259
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.011 Score=50.41 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999998888999999999999999988765
No 260
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=96.02 E-value=0.052 Score=49.20 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=55.0
Q ss_pred ccCCCcHHHHHHHHHHhC------CCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCC-----------------
Q 027976 58 LFIPCTPKGCIELLIRSG------VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHAL----------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g~~~~L~~~~------~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~----------------- 113 (216)
.-+|.++.-.++.|-+.. -.-+|+.++|+|+|+.||..+.+.+...+ +.|+.+.+.
T Consensus 130 a~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 130 AALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred hcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecC
Confidence 346766666666666655 45689999999999999999999888889 555555333
Q ss_pred -CCCHHhhccC-----CCEEEEecCCCC
Q 027976 114 -TKNPEQITSE-----ADIVIAAAGVAN 135 (216)
Q Consensus 114 -t~~l~~~~~~-----ADIVIsatg~p~ 135 (216)
+.+..+.+++ -|+|+.++|.+.
T Consensus 210 ~~~~~~e~~kk~~~~~~DvVlD~vg~~~ 237 (347)
T KOG1198|consen 210 KDENVVELIKKYTGKGVDVVLDCVGGST 237 (347)
T ss_pred CCHHHHHHHHhhcCCCccEEEECCCCCc
Confidence 1234444444 799998888753
No 261
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.02 E-value=0.016 Score=54.54 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=53.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhcc---CCCEEEEecCCCCc-
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITS---EADIVIAAAGVANL- 136 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~---~ADIVIsatg~p~~- 136 (216)
.++.|||.|.+ |.++|..|+++|.+|++.+|+.+ ++++.++ ++|+||..+..+..
T Consensus 2 ~~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 36899999876 99999999999999999988631 2334443 47888877654432
Q ss_pred ---cc--CCcccCCcEEEEeeeC
Q 027976 137 ---VR--GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 137 ---i~--~~~i~~g~vViDvg~~ 154 (216)
+. ...+++|.+|||.+..
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCC
Confidence 11 1346789999999854
No 262
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.0079 Score=50.57 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 578999999999999999999999999999888764
No 263
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.017 Score=54.10 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCC-CEEEEecCCCCcccCCcc-cCCcEEEEeeeCCc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA-DIVIAAAGVANLVRGSWL-KPGAVVLDVGTCPV 156 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~A-DIVIsatg~p~~i~~~~i-~~g~vViDvg~~~~ 156 (216)
.||+|+|+|.|.. |++++++|. +|++|++.........+ +.+. +..+ .+. + +.+.+ ..+.+|+--|+++.
T Consensus 5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~-~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~ 76 (454)
T PRK01368 5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDI-FEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLT 76 (454)
T ss_pred CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHH-HHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCC
Confidence 5899999999998 999999998 59999999854322211 1100 1111 111 0 01111 12345555455442
Q ss_pred cCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 157 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 157 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
..........+-++++++++-........+.-|-|--|.=|+.-|+.++++..
T Consensus 77 ~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 77 HEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred CHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 10000000112368888876321111111223557789999999999988763
No 264
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.99 E-value=0.025 Score=49.52 Aligned_cols=87 Identities=14% Similarity=-0.015 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CCHHhhc-----
Q 027976 67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT----- 121 (216)
Q Consensus 67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~----- 121 (216)
+...|.+...--.|.+++|.|+++.+|..+++++...|++|+.+.++. +++.+.+
T Consensus 126 A~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 126 AYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCC
Confidence 334443333334789999999877789999999999999876654321 1222211
Q ss_pred cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976 122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~ 153 (216)
+..|+++.++|.+.. -.-++++++..++.+|.
T Consensus 206 ~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 206 DGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCeEEEEECCCHHHHHHHHHHhCcCcEEEEecc
Confidence 236888888886532 12345677777777774
No 265
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.0087 Score=50.05 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence 4789999999999999999999999999998887654
No 266
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.99 E-value=0.014 Score=52.81 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.|+.++|+|+|+|+. |.+++..|+..|. ++++++.
T Consensus 21 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 21 KLREKHVLIIGAGAL-GTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred HhcCCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 367899999999996 9999999999997 7999854
No 267
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98 E-value=0.013 Score=51.18 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|.+ |.++|..|+..|.+|++.+++
T Consensus 5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCC
Confidence 68999999875 999999999999999999764
No 268
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.011 Score=50.33 Aligned_cols=35 Identities=29% Similarity=0.131 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999999999999999888765
No 269
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.97 E-value=0.012 Score=49.90 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999888999999999999999888764
No 270
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.97 E-value=0.035 Score=49.26 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=57.2
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHhhcc---CC
Q 027976 68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQITS---EA 124 (216)
Q Consensus 68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~~~---~A 124 (216)
...+++.+. ..|++|+|.|+|+ +|..++.++...|+ +|+++.+.. .++.+..+ ..
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~-vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGP-IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence 344544433 4799999999865 69999988888998 476664431 12222222 27
Q ss_pred CEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976 125 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 125 DIVIsatg~p~~i--~~~~i~~g~vViDvg~~ 154 (216)
|++|.++|.+..+ .-+.++++-.++.+|..
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 9999999976432 23557888888888864
No 271
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.96 E-value=0.017 Score=54.85 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=55.5
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhcc---CCCEEEEecCCCCcc
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS---EADIVIAAAGVANLV 137 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~---~ADIVIsatg~p~~i 137 (216)
+|-+||-|.+ |+++|..|+++|.+|+++||+.+ ++.+.++ ++|+||..++.+..+
T Consensus 8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 6999999876 99999999999999999998631 1223444 399999998866532
Q ss_pred c------CCcccCCcEEEEeeeCC
Q 027976 138 R------GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 138 ~------~~~i~~g~vViDvg~~~ 155 (216)
. ...+++|.++||.+...
T Consensus 87 ~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 87 DQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred HHHHHHHHhhcCCCCEEEECCCCC
Confidence 1 13367899999998764
No 272
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.013 Score=49.33 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence 357899999999999989999999999999998777554
No 273
>PRK06182 short chain dehydrogenase; Validated
Probab=95.96 E-value=0.016 Score=49.48 Aligned_cols=35 Identities=29% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999998888999999999999999888664
No 274
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.96 E-value=0.014 Score=52.96 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.|++++|+|+|.||. |.+++..|+..|. ++++++.
T Consensus 25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD~ 60 (355)
T PRK05597 25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIIDD 60 (355)
T ss_pred HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 367899999999996 9999999999996 6888843
No 275
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.95 E-value=0.01 Score=50.46 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..++++|+++|.|+++.+|+.++..|+++|++|.+..+.
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 356899999999999999999999999999998888665
No 276
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.94 E-value=0.03 Score=49.08 Aligned_cols=36 Identities=25% Similarity=0.023 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+||+|+|.|++|.+|+.++..|+++|.+|+.+.|+
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 468999999999999999999999999998866543
No 277
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.94 E-value=0.015 Score=53.24 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
.+++++|+|+|+||. |.+++..|+..|. ++++++.
T Consensus 38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD~ 73 (370)
T PRK05600 38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLIDD 73 (370)
T ss_pred HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEeC
Confidence 478899999999996 9999999999996 7999843
No 278
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.013 Score=49.38 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++++|+|+++.+|+.++..|+++|++|+++.|+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999998888764
No 279
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.94 E-value=0.014 Score=48.79 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=43.3
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHHhhccCCCEEEEecCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg~p 134 (216)
|+|+|+.|.+|++++..|+..+.+|+++.|+. +.|.+.++.+|.||..++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 68999988899999999999999999998863 13567788899999888843
No 280
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.011 Score=50.04 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|+|+++.+|+.++..|+++|++|.++.++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 689999999998889999999999999999888765
No 281
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.92 E-value=0.018 Score=48.70 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999999999999999999998888654
No 282
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.017 Score=48.58 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999998889999999999999999888765
No 283
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.91 E-value=0.026 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.||+++|.|++|.+|+.++..|+++|++|+++.+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 4799999999999999999999999999877643
No 284
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.90 E-value=0.052 Score=49.10 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=58.0
Q ss_pred ccCCCcHHH-HHHHHHHhC--CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976 58 LFIPCTPKG-CIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~~--~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------------- 113 (216)
...||=+.+ ++.+.++.+ .+++|++|+++|-+..|.+.++.++...|++|+++...
T Consensus 129 ~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~ 208 (338)
T PRK02255 129 YNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGG 208 (338)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCC
Confidence 458988887 444445554 36999999999998888999999999999999998532
Q ss_pred ----CCCHHhhccCCCEEEEe
Q 027976 114 ----TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 ----t~~l~~~~~~ADIVIsa 130 (216)
+.++.+.+++||+|.+-
T Consensus 209 ~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 209 SVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred eEEEEcCHHHHhCCCCEEEEc
Confidence 24667899999999973
No 285
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.89 E-value=0.011 Score=55.70 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=52.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHh---hccCCCEEEEecCCCCc---
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ---ITSEADIVIAAAGVANL--- 136 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~---~~~~ADIVIsatg~p~~--- 136 (216)
++.+||.|.+ |.++|..|++.|.+|++.+|+.+ ++.+ .++++|+||..++.+..
T Consensus 1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 3789999886 99999999999999999988631 1222 23468999988876432
Q ss_pred -cc--CCcccCCcEEEEeee
Q 027976 137 -VR--GSWLKPGAVVLDVGT 153 (216)
Q Consensus 137 -i~--~~~i~~g~vViDvg~ 153 (216)
+. ...+++|.+|||.+.
T Consensus 80 Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred HHHHHHhhCCCCCEEEECCC
Confidence 21 134678999999985
No 286
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=0.022 Score=53.39 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--HhhccCCCEEEEecCCCCcccCCcccC-CcEEEEeeeC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--EQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC 154 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--~~~~~~ADIVIsatg~p~~i~~~~i~~-g~vViDvg~~ 154 (216)
+.+|+|+|+|-|.. |+++++.|.++|+.|++++.++... ........-+=...|. +.. +++.. ..+|..=|++
T Consensus 5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~-~~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS-HDD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCc-cch--hccccCCEEEECCCCC
Confidence 45999999999998 9999999999999999998554320 0000000111011111 111 23322 4555555555
Q ss_pred CccCCCCCCCCCCCeEecccChHHHhh-HcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976 155 PVDVSVDPSCEYGYRLMGDVCYEEAMR-LASVITPVPGGVGPMTVAMLLSNTLDSAK 210 (216)
Q Consensus 155 ~~~~~~~~~~~~~~~l~GDvd~~~~~~-~~~~~tpvpgGvGp~T~amLl~n~~~a~~ 210 (216)
+....+......|-++.||++...-.. .+-.+ -+-|==|.=|+.-|+.+++++.-
T Consensus 81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence 432000000012346889987432210 11111 23355688899999999988754
No 287
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.88 E-value=0.025 Score=47.33 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 35789999999999888999999999999998888654
No 288
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.87 E-value=0.023 Score=53.19 Aligned_cols=52 Identities=25% Similarity=0.211 Sum_probs=43.3
Q ss_pred cCCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEE-Ee
Q 027976 59 FIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI-VH 111 (216)
Q Consensus 59 ~~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti-~~ 111 (216)
--+.|++|+...+ ++.+.+++|++|+|.|.|. ||..+|..|.+.||+|+. +.
T Consensus 203 r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 203 RPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence 3578999976555 4568899999999999987 599999999999999766 44
No 289
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.86 E-value=0.017 Score=51.21 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCCC-------------------------CHHhhccCCCEEEEe
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-------------------------NPEQITSEADIVIAA 130 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-------------------------~l~~~~~~ADIVIsa 130 (216)
++||+++|.|++|.+|+.++..|+++| ++|+++.+... ++.+.+++.|+||+.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 478999999999999999999999886 67887754321 234456678888877
Q ss_pred cCC
Q 027976 131 AGV 133 (216)
Q Consensus 131 tg~ 133 (216)
.|.
T Consensus 82 Ag~ 84 (324)
T TIGR03589 82 AAL 84 (324)
T ss_pred ccc
Confidence 764
No 290
>PRK09186 flagellin modification protein A; Provisional
Probab=95.86 E-value=0.012 Score=49.33 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 578999999999889999999999999998888654
No 291
>PRK09242 tropinone reductase; Provisional
Probab=95.85 E-value=0.01 Score=50.15 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 45789999999998888999999999999999888664
No 292
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.85 E-value=0.027 Score=48.59 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=60.4
Q ss_pred CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCC-----------------CH----H
Q 027976 61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-----------------NP----E 118 (216)
Q Consensus 61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-----------------~l----~ 118 (216)
+|....+...+++... ..|++|+|+|+|. +|..+++++...|++ |+++.+..+ +. .
T Consensus 103 ~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~ 180 (280)
T TIGR03366 103 GCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQG 180 (280)
T ss_pred hhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHH
Confidence 3433334455555443 4899999999976 699999888889986 776643311 11 1
Q ss_pred hhc--cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976 119 QIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 119 ~~~--~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~ 154 (216)
+.. +.+|++|.++|.+..+ --+.++++..++.++..
T Consensus 181 ~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 181 GLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 111 2479999999876533 23567888888888853
No 293
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.84 E-value=0.016 Score=49.72 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=49.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCE---EEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---cccC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHAT---VSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVRG 139 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~---Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~~ 139 (216)
++.+||.|.+ |.+++..|.+.|.. +.+++|+. .+..+.++++|+||.+++... .+..
T Consensus 2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 5899999886 99999999988743 56776541 234456788999999998322 1222
Q ss_pred CcccCCcEEEEee
Q 027976 140 SWLKPGAVVLDVG 152 (216)
Q Consensus 140 ~~i~~g~vViDvg 152 (216)
-+++++.+||++.
T Consensus 81 l~~~~~~~vis~~ 93 (258)
T PRK06476 81 LRFRPGQTVISVI 93 (258)
T ss_pred hccCCCCEEEEEC
Confidence 2356778888765
No 294
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.82 E-value=0.014 Score=52.32 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccC--CCEEEEec
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSE--ADIVIAAA 131 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~--ADIVIsat 131 (216)
|...-+...|++++.. .|+++.|+|+|| +|.-..+....+|++|+++.+..+..++++++ ||..|.++
T Consensus 165 CaGITvYspLk~~g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 165 CAGITVYSPLKRSGLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hcceEEeehhHHcCCC-CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence 5555567889999998 999999999999 59877777888999999998775444555542 55555544
No 295
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.81 E-value=0.01 Score=55.59 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~ 133 (216)
|+||+|+|||.|.. |++-|..|...|.+|++..|.. .++.+++++||+|+..++-
T Consensus 34 LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD 107 (487)
T PRK05225 34 LKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD 107 (487)
T ss_pred hCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence 68999999999875 9999998999999988664431 2467889999999999984
No 296
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.81 E-value=0.023 Score=52.78 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||++.|+|.|+. |+++|.+|.++|++|+++++.
T Consensus 7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence 67899999999998 999999999999999999865
No 297
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.011 Score=52.13 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999989999999999999999988764
No 298
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.81 E-value=0.12 Score=46.11 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=56.5
Q ss_pred ccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-----------------------
Q 027976 58 LFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------- 113 (216)
...||=+.+ ++.+.++.+ .++|.+|+++|-...+.+.++.+|...|++|++++..
T Consensus 126 ~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~ 204 (304)
T TIGR00658 126 LFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSV 204 (304)
T ss_pred CCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 457887777 444444544 5999999999997778999999999999999999532
Q ss_pred --CCCHHhhccCCCEEEEe
Q 027976 114 --TKNPEQITSEADIVIAA 130 (216)
Q Consensus 114 --t~~l~~~~~~ADIVIsa 130 (216)
+.++.+.+++||+|.+-
T Consensus 205 ~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 205 ELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred EEEcCHHHHhCCCCEEEEc
Confidence 13567899999999974
No 299
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.029 Score=52.86 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.+|+++|+|.|++ |+++|.+|.++|++|+.++..
T Consensus 5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCC
Confidence 56899999999998 999999999999999999864
No 300
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.79 E-value=0.035 Score=49.70 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------HHhh
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQI 120 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~ 120 (216)
|....+...+...+....|.+++|.|.|. +|..++.++...|++|+++.+..+. +.+.
T Consensus 163 ~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~ 241 (357)
T PLN02514 163 CAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEA 241 (357)
T ss_pred hhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHh
Confidence 33333444555555545799999999866 5999999999999987666433210 1122
Q ss_pred ccCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976 121 TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 121 ~~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~ 154 (216)
....|++|.++|.+..+. -+.++++..++.+|..
T Consensus 242 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 242 ADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred cCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence 334699999988653321 2456777778888754
No 301
>PLN02858 fructose-bisphosphate aldolase
Probab=95.79 E-value=0.018 Score=60.74 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cC-
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG- 139 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~- 139 (216)
.++|.+||.|.+ |.+++..|++.|.+|++++++. .+..+.++++|+||.+++.|.. + ..
T Consensus 324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 478999999886 9999999999999999998763 2455778899999999996542 1 11
Q ss_pred ---CcccCCcEEEEeeeC
Q 027976 140 ---SWLKPGAVVLDVGTC 154 (216)
Q Consensus 140 ---~~i~~g~vViDvg~~ 154 (216)
+.+++|.++||++..
T Consensus 403 g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTV 420 (1378)
T ss_pred hHHhcCCCCCEEEECCCC
Confidence 234778999998764
No 302
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.012 Score=51.24 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 42 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE 42 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998889999999999999999888765
No 303
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.78 E-value=0.062 Score=50.12 Aligned_cols=76 Identities=16% Similarity=0.030 Sum_probs=57.4
Q ss_pred CccCCCcHHH-HHHHHHHhCC---CCCCCeEEEEcCC--chhHHHHHHHHHhC-CCEEEEEeCC----------------
Q 027976 57 PLFIPCTPKG-CIELLIRSGV---EIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL---------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~~---~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~---------------- 113 (216)
+...||=+.+ ++.+.++.+. .++|++|+++|.+ +.+.+.++..|+.. |++|+++...
T Consensus 214 ~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G 293 (429)
T PRK11891 214 PGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG 293 (429)
T ss_pred CCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcC
Confidence 4568998888 5555555542 4899999999997 45688888887776 9999888532
Q ss_pred -----CCCHHhhccCCCEEEEecC
Q 027976 114 -----TKNPEQITSEADIVIAAAG 132 (216)
Q Consensus 114 -----t~~l~~~~~~ADIVIsatg 132 (216)
+.++.+++++||+|++..+
T Consensus 294 ~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 294 HVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CeEEEEcCHHHHhCCCCEEEEcCc
Confidence 2467789999999998553
No 304
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.013 Score=49.46 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.+..|+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4679999999999889999999999999998888764
No 305
>PRK07680 late competence protein ComER; Validated
Probab=95.77 E-value=0.017 Score=50.11 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=50.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC----EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---ccc
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR 138 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~ 138 (216)
++.|||+|.+ |.+++..|.+.|. +|++++|+. .+..+.++++|+||.++.... .+.
T Consensus 2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 5899999875 9999999998883 688888752 234456788999999985321 111
Q ss_pred --CCcccCCcEEEEeee
Q 027976 139 --GSWLKPGAVVLDVGT 153 (216)
Q Consensus 139 --~~~i~~g~vViDvg~ 153 (216)
...++++.+|+++.-
T Consensus 81 ~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 81 KLAPHLTDEHCLVSITS 97 (273)
T ss_pred HHHhhcCCCCEEEEECC
Confidence 124566788888863
No 306
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.77 E-value=0.033 Score=42.87 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEEEcCCchhHHHHHHHHHh-CCCE-EEEEeCCC----------------------CCHHhhccCCCEEEEec
Q 027976 82 NAVVIGRSNIVGLPTSLLLQR-HHAT-VSIVHALT----------------------KNPEQITSEADIVIAAA 131 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~-~ga~-Vti~~~~t----------------------~~l~~~~~~ADIVIsat 131 (216)
+|.|+|++|-+|+.++..+.+ .+.+ +-.+.+.. .++.+.++++|++|..|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 689999955569999999988 5676 55555554 45677777788888777
No 307
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.76 E-value=0.021 Score=48.14 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 468999999999888999999999999999877644
No 308
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.76 E-value=0.036 Score=48.23 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
+||+++|.|+.|.+|+.++..|+++|.+|+++.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4789999999999999999999999999877654
No 309
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.76 E-value=0.041 Score=47.84 Aligned_cols=93 Identities=15% Similarity=0.003 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc
Q 027976 61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT 121 (216)
Q Consensus 61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~ 121 (216)
|+....++..|.+....-.|.+++|.|+++.+|..++.++...|++|+.+.+.. .++.+.+
T Consensus 125 ~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v 204 (329)
T cd08294 125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEAL 204 (329)
T ss_pred ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence 333444455554433335789999999877789999999999999876654321 1222211
Q ss_pred -----cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976 122 -----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 122 -----~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~ 153 (216)
+..|+++.++|.+.. -.-+.++++..++.++.
T Consensus 205 ~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 205 KEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred HHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence 236888888876332 12244566666676663
No 310
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.74 E-value=0.028 Score=47.51 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=41.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCC---CE-EEEEeCCC----------------CCHHhhccCCCEEEEecCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHH---AT-VSIVHALT----------------KNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~-Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p 134 (216)
+..++.|||+|.. |++++..|.+.+ .+ ++++++.. .+..+.++++|+||.+++..
T Consensus 3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~ 77 (245)
T PRK07634 3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS 77 (245)
T ss_pred CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH
Confidence 4578999999886 999999998776 23 66676531 24556788999999999853
No 311
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.73 E-value=0.016 Score=48.97 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++.+|..++..|+++|++|+++.|+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999999999999999999999999888764
No 312
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.015 Score=48.49 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 47899999999999999999999999999998887754
No 313
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.018 Score=47.90 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998888999999999999999888775
No 314
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.029 Score=52.57 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-CHH--hhccCCCEEEEecCCCCcccCCccc-CCcEEEEeee
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NPE--QITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGT 153 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~--~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~ 153 (216)
++||+++|+|.|.. |+++++.|.++|++|++...+.. +.. +.+++ ++.....+.+ .+.+. .+.+|.--|+
T Consensus 6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~----~~~~~~~d~vV~SpgI 79 (468)
T PRK04690 6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS----AQRLAAFDVVVKSPGI 79 (468)
T ss_pred cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC----hHHccCCCEEEECCCC
Confidence 46899999999987 99999999999999999875431 221 12333 3222111211 12222 3455655565
Q ss_pred CCccCCCCCCCCCCCeEecccChH--HHhhHc---ceecccCCcccHHHHHHHHHHHHHHH
Q 027976 154 CPVDVSVDPSCEYGYRLMGDVCYE--EAMRLA---SVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~GDvd~~--~~~~~~---~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
++...........+-++++++++. ...+.. ..+.-|-|--|.=|+.-|+.+++...
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 553200000001123688888751 111100 11223568899999999999988754
No 315
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.69 E-value=0.013 Score=50.09 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998888999999999999999888765
No 316
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.014 Score=49.74 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|++++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999989999999999999998888665
No 317
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.68 E-value=0.016 Score=48.68 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 3679999999999999999999999999998888664
No 318
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.68 E-value=0.019 Score=48.72 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.+++||+++|.|+++-+|++++..|+++|++|+++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 3578999999999999999999999999999888754
No 319
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.014 Score=49.06 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999999999999999999998888765
No 320
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.68 E-value=0.034 Score=46.38 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=44.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhhccCCCEEEEecCCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~~ADIVIsatg~p 134 (216)
.++.|||++|-+|.-++.-+.++|.+||-+-|+.. .+.+.+..-|+||+|.|.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 37899999999999999999999999998877521 2346778889999999854
No 321
>PRK06194 hypothetical protein; Provisional
Probab=95.67 E-value=0.016 Score=49.69 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999889999999999999999888764
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.66 E-value=0.083 Score=43.97 Aligned_cols=94 Identities=28% Similarity=0.362 Sum_probs=61.8
Q ss_pred CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhh-
Q 027976 61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQI- 120 (216)
Q Consensus 61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~- 120 (216)
|+....+...+++...-..|++++|.|+|+ +|+.++.++...|++|+.+.++.. +..+.
T Consensus 116 ~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 194 (271)
T cd05188 116 PEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEEL 194 (271)
T ss_pred cCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHH
Confidence 343444455555555446799999999999 799999999999998877755311 11111
Q ss_pred ----ccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976 121 ----TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 121 ----~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~ 155 (216)
-+..|++|++++.+..+ ..+.++++..+++++...
T Consensus 195 ~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 195 RLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred HHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence 24579999888863221 234566777788887543
No 323
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.66 E-value=0.015 Score=49.33 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999888999999999999999888765
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.65 E-value=0.044 Score=48.10 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCCCHH-----------h-hccCCCEEEEecCCCCccc--CCcc
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTKNPE-----------Q-ITSEADIVIAAAGVANLVR--GSWL 142 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~~l~-----------~-~~~~ADIVIsatg~p~~i~--~~~i 142 (216)
..|++++|+|+|+ ||..+++++...|++ |.++.+....++ + .-..+|++|.++|.+..+. -+.+
T Consensus 143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l 221 (308)
T TIGR01202 143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL 221 (308)
T ss_pred cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence 4688999999876 599988888889997 545543321111 0 1134799999999875432 2567
Q ss_pred cCCcEEEEeeeC
Q 027976 143 KPGAVVLDVGTC 154 (216)
Q Consensus 143 ~~g~vViDvg~~ 154 (216)
+++..++-+|..
T Consensus 222 ~~~G~iv~~G~~ 233 (308)
T TIGR01202 222 AKGGEIVLAGFY 233 (308)
T ss_pred hcCcEEEEEeec
Confidence 887777777754
No 325
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.64 E-value=0.017 Score=48.11 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.+|+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999999999999999999999998888765
No 326
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.038 Score=51.17 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-HHhhccC--CCEEEEecCCCCcccCCcc-cCCcEEEEeee
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-PEQITSE--ADIVIAAAGVANLVRGSWL-KPGAVVLDVGT 153 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-l~~~~~~--ADIVIsatg~p~~i~~~~i-~~g~vViDvg~ 153 (216)
+.+|+++|+|.|++ |+++|+.|+++|+.|++.+..... ..+.+++ .-+-+. .|. .+...+ ..+.+|+--++
T Consensus 3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~---~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGR---LKDALDNGFDILALSPGI 77 (445)
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCC---CCHHHHhCCCEEEECCCC
Confidence 57899999999987 999999999999999998764321 1111221 011110 111 000111 12345555555
Q ss_pred CCccCCCCCCCCCCCeEecccChHH-Hhh----HcceecccCCcccHHHHHHHHHHHHHHH
Q 027976 154 CPVDVSVDPSCEYGYRLMGDVCYEE-AMR----LASVITPVPGGVGPMTVAMLLSNTLDSA 209 (216)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~GDvd~~~-~~~----~~~~~tpvpgGvGp~T~amLl~n~~~a~ 209 (216)
+|...........+-+++++.++-. ..+ +.-+ |-|=-|.=|+..|+.+++...
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIA---ITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEE---EECCCcHHHHHHHHHHHHHHc
Confidence 4421000000011235666666521 111 2233 446688889999998888653
No 327
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.63 E-value=0.032 Score=52.78 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=43.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI 126 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI 126 (216)
++|.|||+|.+ |.++|..|+..|.+|++++++. .++.+.+++||+
T Consensus 5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 57999999876 9999999999999999997642 234467889999
Q ss_pred EEEecCCC
Q 027976 127 VIAAAGVA 134 (216)
Q Consensus 127 VIsatg~p 134 (216)
||.+++..
T Consensus 84 Vieavpe~ 91 (495)
T PRK07531 84 IQESVPER 91 (495)
T ss_pred EEEcCcCC
Confidence 99998754
No 328
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.014 Score=50.31 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999999999999998888654
No 329
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.015 Score=49.20 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999998888999999999999999888765
No 330
>PRK07856 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.026 Score=47.54 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999998887664
No 331
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.61 E-value=0.043 Score=48.23 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=49.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHHhhc-----cCCCEEEEecCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQIT-----SEADIVIAAAGV 133 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~~~-----~~ADIVIsatg~ 133 (216)
|++|+|.|+++.+|..++.++...|+ +|+.+.++. .++.+.+ +..|++++++|.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 38999999977789999988888998 777664431 1222211 247888888886
Q ss_pred CCc-ccCCcccCCcEEEEeee
Q 027976 134 ANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 134 p~~-i~~~~i~~g~vViDvg~ 153 (216)
+.. -.-+.++++..++.+|.
T Consensus 235 ~~~~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 235 EISDTVISQMNENSHIILCGQ 255 (345)
T ss_pred HHHHHHHHHhccCCEEEEEee
Confidence 532 11244677777777773
No 332
>PRK06196 oxidoreductase; Provisional
Probab=95.61 E-value=0.017 Score=50.78 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=35.0
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456889999999998888999999999999999888765
No 333
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.016 Score=49.31 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999999888765
No 334
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.023 Score=47.50 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.+..|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999998888999999999999999988775
No 335
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.016 Score=48.33 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|.|+++.+|+.++..|+++|++|++..|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 578999999999999999999999999998877654
No 336
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.60 E-value=0.03 Score=49.95 Aligned_cols=59 Identities=20% Similarity=0.111 Sum_probs=45.6
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHHhhccCCCEEE
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITSEADIVI 128 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~~ADIVI 128 (216)
+.+-.+++++|.|++|.+|+.++..|+++|++|+++.+... .+.+.+++.|.||
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 34567899999999999999999999999999887654310 1234566789999
Q ss_pred EecCC
Q 027976 129 AAAGV 133 (216)
Q Consensus 129 satg~ 133 (216)
...+.
T Consensus 85 h~A~~ 89 (353)
T PLN02896 85 HVAAS 89 (353)
T ss_pred ECCcc
Confidence 87764
No 337
>PRK08264 short chain dehydrogenase; Validated
Probab=95.60 E-value=0.023 Score=47.22 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t 114 (216)
++.+++++|+|+++.+|+.++..|+++|+ +|.++.|..
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 46789999999988899999999999999 898887753
No 338
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.027 Score=47.31 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+|+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999998887664
No 339
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.59 E-value=0.03 Score=50.70 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=51.8
Q ss_pred eEEEEcCCchhHHHHHHHHHhCC--------CEEEEEeC-----C----------------------------CCCHHhh
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHH--------ATVSIVHA-----L----------------------------TKNPEQI 120 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~g--------a~Vti~~~-----~----------------------------t~~l~~~ 120 (216)
+|.|||+|.. |.++|..|+..| .+|++..+ . +.++.+.
T Consensus 1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999886 999999999988 78888755 1 1357788
Q ss_pred ccCCCEEEEecCCCCc---cc--CCcccCCcEEEEee
Q 027976 121 TSEADIVIAAAGVANL---VR--GSWLKPGAVVLDVG 152 (216)
Q Consensus 121 ~~~ADIVIsatg~p~~---i~--~~~i~~g~vViDvg 152 (216)
+++||+||-|++...+ +. ..+++++..++-+.
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 9999999999986431 11 13456677776663
No 340
>PLN02427 UDP-apiose/xylose synthase
Probab=95.59 E-value=0.03 Score=50.60 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=45.8
Q ss_pred hCCCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC----------------------------CCHHhhccCC
Q 027976 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT----------------------------KNPEQITSEA 124 (216)
Q Consensus 74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t----------------------------~~l~~~~~~A 124 (216)
.+..++.++|+|.|+.|.+|+.++..|+++ |.+|..+.+.. ..+.+.++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 345567789999999999999999999998 48888776431 0134567789
Q ss_pred CEEEEecCC
Q 027976 125 DIVIAAAGV 133 (216)
Q Consensus 125 DIVIsatg~ 133 (216)
|+||...+.
T Consensus 88 d~ViHlAa~ 96 (386)
T PLN02427 88 DLTINLAAI 96 (386)
T ss_pred CEEEEcccc
Confidence 999987763
No 341
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.57 E-value=0.021 Score=47.33 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+++||+++|.|+++.+|..++..|+++|++|++..|+.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999999999999999999999999998887753
No 342
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.57 E-value=0.022 Score=54.15 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=29.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|-+ |.++|..|+..|.+|++.+++
T Consensus 6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence 67999999875 999999999999999999765
No 343
>PRK08589 short chain dehydrogenase; Validated
Probab=95.57 E-value=0.018 Score=49.31 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3689999999998888999999999999999888765
No 344
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.56 E-value=0.024 Score=48.04 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 5789999999999999999999999999999887653
No 345
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.56 E-value=0.041 Score=49.35 Aligned_cols=54 Identities=13% Similarity=0.324 Sum_probs=41.2
Q ss_pred eEEEEcCCchhHHHHHHHHHhCC-C------EEEEEeCCC--------------------------CCHHhhccCCCEEE
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHH-A------TVSIVHALT--------------------------KNPEQITSEADIVI 128 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~g-a------~Vti~~~~t--------------------------~~l~~~~~~ADIVI 128 (216)
+|+|+|++|.||..++..|+..+ + ++.+.++.. .+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 79999996668999999998766 2 366665432 13457899999999
Q ss_pred EecCCCC
Q 027976 129 AAAGVAN 135 (216)
Q Consensus 129 satg~p~ 135 (216)
.+.|.|.
T Consensus 82 itAG~~~ 88 (323)
T cd00704 82 LVGAFPR 88 (323)
T ss_pred EeCCCCC
Confidence 9998754
No 346
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.54 E-value=0.024 Score=48.60 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------CHHhhccCC--CEEEEecCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITSEA--DIVIAAAGV 133 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------~l~~~~~~A--DIVIsatg~ 133 (216)
+++|+|++|.+|+.++..|.++|.+|+.+.|..- .+.+.++++ |+||...+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 4899999888999999999999999998877532 345566655 999988774
No 347
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.54 E-value=0.018 Score=48.65 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 678999999999889999999999999998888665
No 348
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.54 E-value=0.021 Score=52.41 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC---------------------CCHH-hhccCCCEEEEecCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------------KNPE-QITSEADIVIAAAGVAN 135 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---------------------~~l~-~~~~~ADIVIsatg~p~ 135 (216)
.-++|.|+|+.|.+|+-+..+|.++ +.+++.+.+.. .++. ..++++|+|+.|+|...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~ 116 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT 116 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence 4569999999999999999999988 57777765431 0011 22477999999998632
Q ss_pred ---cccCCcccCCcEEEEeeeCCc
Q 027976 136 ---LVRGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 136 ---~i~~~~i~~g~vViDvg~~~~ 156 (216)
+++. ++.|..|||++...+
T Consensus 117 s~~i~~~--~~~g~~VIDlSs~fR 138 (381)
T PLN02968 117 TQEIIKA--LPKDLKIVDLSADFR 138 (381)
T ss_pred HHHHHHH--HhCCCEEEEcCchhc
Confidence 2332 357899999986654
No 349
>PLN02214 cinnamoyl-CoA reductase
Probab=95.52 E-value=0.041 Score=49.09 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------------CHHhhccCCCEEEE
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------NPEQITSEADIVIA 129 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------~l~~~~~~ADIVIs 129 (216)
+++|+++|.|++|.+|+.++..|+++|.+|+.+.|..+ ++.+.++.+|+||.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 57899999999999999999999999999877654311 13455677899997
Q ss_pred ecC
Q 027976 130 AAG 132 (216)
Q Consensus 130 atg 132 (216)
..+
T Consensus 88 ~A~ 90 (342)
T PLN02214 88 TAS 90 (342)
T ss_pred ecC
Confidence 776
No 350
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.52 E-value=0.039 Score=45.05 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=26.0
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA 112 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~ 112 (216)
+|+|+|+|+. |..++..|+..|. ++++++.
T Consensus 1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 5899999986 9999999999997 5888844
No 351
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.51 E-value=0.04 Score=49.06 Aligned_cols=77 Identities=27% Similarity=0.356 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---CC------------------CHH--hhccCCCEEEEecCCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---TK------------------NPE--QITSEADIVIAAAGVA 134 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---t~------------------~l~--~~~~~ADIVIsatg~p 134 (216)
..|++|+|+|+|+ +|..++.++...|++|+++.++ .+ +.. .....+|+||.++|.+
T Consensus 171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence 4789999999865 5999999899999998887652 10 110 1123479999999976
Q ss_pred Cccc--CCcccCCcEEEEeeeCC
Q 027976 135 NLVR--GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 135 ~~i~--~~~i~~g~vViDvg~~~ 155 (216)
..+. -+.++++..++-+|...
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecCC
Confidence 5332 24467776676666543
No 352
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.50 E-value=0.02 Score=47.97 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 578999999999999999999999999998888765
No 353
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.48 E-value=0.034 Score=49.47 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=50.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------------------CCHHhhccCCCEEEEe
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------------------~~l~~~~~~ADIVIsa 130 (216)
.+|.|||+|.. |.+++..|++.|.+|+++.|.. .+. +.++.+|+||.+
T Consensus 3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 47999999875 9999999999999999987641 011 345689999999
Q ss_pred cCCCCc---cc--CCcccCCcEEEEee
Q 027976 131 AGVANL---VR--GSWLKPGAVVLDVG 152 (216)
Q Consensus 131 tg~p~~---i~--~~~i~~g~vViDvg 152 (216)
+..+.. +. ...++++.+|+++.
T Consensus 81 vk~~~~~~~~~~l~~~~~~~~iii~~~ 107 (341)
T PRK08229 81 VKSAATADAAAALAGHARPGAVVVSFQ 107 (341)
T ss_pred ecCcchHHHHHHHHhhCCCCCEEEEeC
Confidence 876542 11 12346678888873
No 354
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.48 E-value=0.094 Score=47.83 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=54.8
Q ss_pred CccCCCcHHH-HHHHHHHhCC--CCCCCeEEEEcCC-------chhHHHHHHHHHhCCCEEEEEeCC-------------
Q 027976 57 PLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGRS-------NIVGLPTSLLLQRHHATVSIVHAL------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~~--~l~gk~v~ViG~g-------g~vg~~~a~~L~~~ga~Vti~~~~------------- 113 (216)
+.+.||=+.+ ++.+.++.+. .++|++++++|.| ..|.+.++.+++..|++|++++..
T Consensus 144 ~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~ 223 (357)
T TIGR03316 144 DIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAK 223 (357)
T ss_pred CCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHH
Confidence 3468998888 4555455553 3789999999753 256788888899999999998543
Q ss_pred ------------CCCHHhhccCCCEEEEec
Q 027976 114 ------------TKNPEQITSEADIVIAAA 131 (216)
Q Consensus 114 ------------t~~l~~~~~~ADIVIsat 131 (216)
+.++.+.+++||+|.+-+
T Consensus 224 ~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 224 KNAAENGGKFNIVNSMDEAFKDADIVYPKS 253 (357)
T ss_pred HHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 135568889999988653
No 355
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.48 E-value=0.037 Score=49.36 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~ 133 (216)
|+||+|.|||.|.- |++=+..|...|.+|.+-.|.. .+..+++++||+|..-+|-
T Consensus 16 LkgK~iaIIGYGsQ-G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PD 84 (338)
T COG0059 16 LKGKKVAIIGYGSQ-GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPD 84 (338)
T ss_pred hcCCeEEEEecChH-HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCch
Confidence 68999999999876 9999999999999998887652 2467999999999999884
No 356
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=95.47 E-value=0.055 Score=49.86 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHHh---CCCCCCCeEEEEcCC----------------chhHHHHHHHHHhCCCEEEEEeCCC-------
Q 027976 61 PCTPKGCIELLIRS---GVEIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT------- 114 (216)
Q Consensus 61 p~Ta~g~~~~L~~~---~~~l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t------- 114 (216)
++++.-++..+.+. +-+++||+++|.|.+ |.+|.++|..|..+|++|+++++..
T Consensus 163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~ 242 (390)
T TIGR00521 163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG 242 (390)
T ss_pred CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence 66777776666543 246899999999983 3359999999999999999987531
Q ss_pred ---------CCH-H----hhccCCCEEEEecCCCCccc----CCcccC--CcEEEEeeeCCc
Q 027976 115 ---------KNP-E----QITSEADIVIAAAGVANLVR----GSWLKP--GAVVLDVGTCPV 156 (216)
Q Consensus 115 ---------~~l-~----~~~~~ADIVIsatg~p~~i~----~~~i~~--g~vViDvg~~~~ 156 (216)
.++ . +...+.|++|.+.+...+-+ ..-+++ ..+.+.+.-+|+
T Consensus 243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pd 304 (390)
T TIGR00521 243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPD 304 (390)
T ss_pred cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcH
Confidence 122 1 23356899999988765421 223444 244566665553
No 357
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.024 Score=48.39 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999998889999999999999999988764
No 358
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.46 E-value=0.069 Score=48.47 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCCcHHHHHHHHHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------H
Q 027976 60 IPCTPKGCIELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------P 117 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l 117 (216)
++|....+...+.+.... ..|++++|.|+|+ +|..++.++...|++|+++.+..+. +
T Consensus 158 l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v 236 (375)
T PLN02178 158 LLCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKM 236 (375)
T ss_pred hhccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHH
Confidence 344444455556555433 3689999999875 5999999999999987666433111 1
Q ss_pred HhhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976 118 EQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 118 ~~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~ 154 (216)
.+....+|++|.++|.+..+ .-+.++++..++.++..
T Consensus 237 ~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 237 KEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred HHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence 11223479999998876432 22456777777788764
No 359
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.45 E-value=0.034 Score=50.29 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=43.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------C------HHhhccCCCEEEEecC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N------PEQITSEADIVIAAAG 132 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~------l~~~~~~ADIVIsatg 132 (216)
++++|+|.|+.|.+|+.++..|.++|.+|+.+.|... | +...++++|+||...+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 6799999999999999999999999999888765310 1 2334567899997775
No 360
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.44 E-value=0.023 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|-+ |.+++..|+..|.+|++++++
T Consensus 4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHH-HHHHHHHHHHCCCceEEEeCC
Confidence 57999999875 999999999999999998743
No 361
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.016 Score=51.82 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999998888999999999999999988775
No 362
>PLN02527 aspartate carbamoyltransferase
Probab=95.44 E-value=0.1 Score=46.51 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=54.9
Q ss_pred CccCCCcHHHHHHHH-HHhCCCCCCCeEEEEcCC-c-hhHHHHHHHHHhC-CCEEEEEeCC-------------------
Q 027976 57 PLFIPCTPKGCIELL-IRSGVEIMGKNAVVIGRS-N-IVGLPTSLLLQRH-HATVSIVHAL------------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g~~~~L-~~~~~~l~gk~v~ViG~g-g-~vg~~~a~~L~~~-ga~Vti~~~~------------------- 113 (216)
+...||=+.+=+--+ ++.+ +++|++|+++|-+ . -+.+.++..|... |++|+++...
T Consensus 128 ~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~ 206 (306)
T PLN02527 128 PGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEW 206 (306)
T ss_pred CCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEE
Confidence 346899888844444 4454 6999999999986 2 2578888887776 8999888542
Q ss_pred --CCCHHhhccCCCEEEEec
Q 027976 114 --TKNPEQITSEADIVIAAA 131 (216)
Q Consensus 114 --t~~l~~~~~~ADIVIsat 131 (216)
+.++.+.+++||+|.+..
T Consensus 207 ~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 207 EESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred EEEcCHHHHhCCCCEEEECC
Confidence 246789999999999743
No 363
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.44 E-value=0.026 Score=53.64 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=51.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------------------CHHhhcc
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------------NPEQITS 122 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------------------~l~~~~~ 122 (216)
++|.|||+|-+ |.++|..|+..|..|++.+++.+ ++ +.+.
T Consensus 8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~~~ 85 (507)
T PRK08268 8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL-ADLA 85 (507)
T ss_pred CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhC
Confidence 67999999865 99999999999999999976521 22 3467
Q ss_pred CCCEEEEecCCCCcccCC-------cccCCcEE-EEeeeC
Q 027976 123 EADIVIAAAGVANLVRGS-------WLKPGAVV-LDVGTC 154 (216)
Q Consensus 123 ~ADIVIsatg~p~~i~~~-------~i~~g~vV-iDvg~~ 154 (216)
+||+||.++.-..-++.. ..++++++ .|.++-
T Consensus 86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 899999998754333332 23456665 355543
No 364
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.42 E-value=0.047 Score=48.19 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=43.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEE
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVI 128 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVI 128 (216)
+.++++++|.|++|.+|+.++..|+++|++|.++.+.. .++.+.+++.|+||
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 45789999999999999999999999999987654321 01345567789999
Q ss_pred EecC
Q 027976 129 AAAG 132 (216)
Q Consensus 129 satg 132 (216)
..++
T Consensus 86 h~A~ 89 (338)
T PLN00198 86 HVAT 89 (338)
T ss_pred EeCC
Confidence 7776
No 365
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.41 E-value=0.057 Score=48.20 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=33.4
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
..-+++|+|+|.|+.|.+|+.++..|+++|.+|+.+.+
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 34578899999999999999999999999999887754
No 366
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.033 Score=47.02 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999999999999999999999888764
No 367
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.41 E-value=0.048 Score=48.44 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=41.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCCC-------CH----------------HhhccCCCEEEEecCCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-------NP----------------EQITSEADIVIAAAGVA 134 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-------~l----------------~~~~~~ADIVIsatg~p 134 (216)
+|.|||+|. ||.+++..|+.+| .+|.++++... ++ .+.+++||+||.++|.|
T Consensus 2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 699999976 6999999999999 46888876531 01 25678999999999975
No 368
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.39 E-value=0.058 Score=47.48 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=41.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~ 133 (216)
++|.|||+|. +|..++..++..|. +|.+.++.. .+. +.+++||+||.+.|.
T Consensus 3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 5899999965 59999999998874 888886531 123 568999999999886
Q ss_pred CC
Q 027976 134 AN 135 (216)
Q Consensus 134 p~ 135 (216)
|.
T Consensus 81 p~ 82 (307)
T PRK06223 81 PR 82 (307)
T ss_pred CC
Confidence 54
No 369
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.38 E-value=0.084 Score=48.55 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=49.9
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHHhhccCCCEEEE
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA 129 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~ADIVIs 129 (216)
+|.|||.|-. |.++|..|+ .|.+|+.++++. .+..+..++||+||.
T Consensus 2 kI~VIGlGyv-Gl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGYV-GLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEEECCCHH-HHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 5899999875 999998777 488999997641 112345688999999
Q ss_pred ecCCCC----------ccc------CCcccCCcEEEEeeeCC
Q 027976 130 AAGVAN----------LVR------GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 130 atg~p~----------~i~------~~~i~~g~vViDvg~~~ 155 (216)
+++.|- .+. .. +++|.+||+-+.-|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 998761 110 11 36788888766544
No 370
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=95.38 E-value=0.022 Score=49.81 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
..+.||.++|-|++.-+|+++|..|++.||+|+++.|+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~ 42 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE 42 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 358999999999998899999999999999999998763
No 371
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.022 Score=47.45 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 3678999999998888999999999999998887654
No 372
>PRK07411 hypothetical protein; Validated
Probab=95.38 E-value=0.029 Score=51.61 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH 111 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~ 111 (216)
|+.++|+|+|.||. |-+++.+|+..|. ++++++
T Consensus 36 L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD 69 (390)
T PRK07411 36 LKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVD 69 (390)
T ss_pred HhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEC
Confidence 67889999999996 9999999999997 688883
No 373
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=95.37 E-value=0.032 Score=47.20 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|+|+++.+|+.++..|+++|+.|.++.+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999998877653
No 374
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.37 E-value=0.029 Score=51.60 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH 111 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~ 111 (216)
|+.++|+|+|.||. |..++..|+..|. ++++++
T Consensus 40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD 73 (392)
T PRK07878 40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVE 73 (392)
T ss_pred HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEEC
Confidence 57889999999996 9999999999996 688883
No 375
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.36 E-value=0.022 Score=47.50 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999888775
No 376
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.36 E-value=0.027 Score=47.83 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|.|++ +-+|++++..|+++|++|.++.|+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 689999999997 335999999999999999888654
No 377
>PLN02778 3,5-epimerase/4-reductase
Probab=95.35 E-value=0.056 Score=47.45 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---HHhhcc--CCCEEEEecCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITS--EADIVIAAAGV 133 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~~~~--~ADIVIsatg~ 133 (216)
.++++|.|++|.+|+.++..|.++|.+|+.....-.+ +...++ +.|+||.+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~ 67 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV 67 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence 4789999999999999999999999998765433222 333333 58999987763
No 378
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.33 E-value=0.044 Score=50.09 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+...++++++|+|++|.+|+.++..|.++|.+|+.+.|.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 445678999999999999999999999999998888664
No 379
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.33 E-value=0.023 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4689999999998888999999999999998888664
No 380
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.021 Score=47.36 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.+++++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 468999999998889999999999999999988765
No 381
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.30 E-value=0.037 Score=53.40 Aligned_cols=36 Identities=22% Similarity=-0.000 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+||.++|.|++|-+|+.++..|+++|++|+++.|+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999998888999999999999999887664
No 382
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.28 E-value=0.04 Score=49.85 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=52.2
Q ss_pred CeEEEEcCCchhHHHHHHHHHhC-CCEEE-EEeCCC---C--------------------CHHhhccCCCEEEEecCCCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRH-HATVS-IVHALT---K--------------------NPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~-ga~Vt-i~~~~t---~--------------------~l~~~~~~ADIVIsatg~p~ 135 (216)
.+|.|+|++|.+|+-+++.|.++ +.++. ++.+.. + +..+..+++|+|+.|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 37999999888999999999877 46765 543321 0 11233357999999998542
Q ss_pred c--ccCCcccCCcEEEEeeeCCc
Q 027976 136 L--VRGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 136 ~--i~~~~i~~g~vViDvg~~~~ 156 (216)
. +-+...+.|..|||++...+
T Consensus 81 s~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 81 SAELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred HHHHHHHHHhCCCEEEeCChhhh
Confidence 1 33334467899999987654
No 383
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.28 E-value=0.036 Score=47.20 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||.++|.|++ | +|++++..|+++|++|.++.++
T Consensus 6 ~~~~~k~~lItGas~g~G-IG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQS-IAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCc-HHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999986 5 4999999999999999888665
No 384
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.28 E-value=0.16 Score=46.24 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHh-CCCE---EEEEeCCC----------CC-----H-HhhccCCCEEEEecCCCC--c
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQR-HHAT---VSIVHALT----------KN-----P-EQITSEADIVIAAAGVAN--L 136 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga~---Vti~~~~t----------~~-----l-~~~~~~ADIVIsatg~p~--~ 136 (216)
++.+|.|||+.|.+|+-+..+|.+ .... +..+.+.. ++ + .+..++.|+++.|+|..- .
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~ 83 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ 83 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence 456899999999999999999994 6665 54443321 00 0 133478999999997532 1
Q ss_pred ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976 137 VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML 201 (216)
Q Consensus 137 i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL 201 (216)
+-+...+.|..|||.+...+- ++.. .-.+-.++.+.+++..+.+ ..|| -.|++|+
T Consensus 84 ~~~~~~~~G~~VID~Ss~fR~---~~~v---plvvPEvN~e~i~~~~~iI-anPn---C~tt~~~ 138 (347)
T PRK06728 84 FVNQAVSSGAIVIDNTSEYRM---AHDV---PLVVPEVNAHTLKEHKGII-AVPN---CSALQMV 138 (347)
T ss_pred HHHHHHHCCCEEEECchhhcC---CCCC---CeEeCCcCHHHHhccCCEE-ECCC---CHHHHHH
Confidence 222334679999999877653 1111 1245556655554322433 3553 3445554
No 385
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.26 E-value=0.043 Score=49.15 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC------------------CCCHHh-
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL------------------TKNPEQ- 119 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~------------------t~~l~~- 119 (216)
+|+++.-+..+|.+..---.|++|+|.|+++.||..+.+++...|++ |.+..+. ..++.+
T Consensus 123 l~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~ 202 (326)
T COG0604 123 LPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ 202 (326)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHH
Confidence 45555566667766332233999999998888999999999999965 3333222 112322
Q ss_pred ---hcc--CCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976 120 ---ITS--EADIVIAAAGVANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 120 ---~~~--~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~ 153 (216)
.+. ..|+|+..+|...+ -.-..++++-.++.++.
T Consensus 203 v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 203 VRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEec
Confidence 222 46888888876543 12344555555555554
No 386
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.26 E-value=0.067 Score=47.54 Aligned_cols=53 Identities=28% Similarity=0.418 Sum_probs=41.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~ 133 (216)
++|.|||+|. ||..+|..|+.+|. +|++++... .++ +.+++||+||.+.|.
T Consensus 2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCCEEEEcCCC
Confidence 4799999976 59999999999875 788886531 233 348899999999996
Q ss_pred CC
Q 027976 134 AN 135 (216)
Q Consensus 134 p~ 135 (216)
|.
T Consensus 80 p~ 81 (305)
T TIGR01763 80 PR 81 (305)
T ss_pred CC
Confidence 54
No 387
>PLN00106 malate dehydrogenase
Probab=95.25 E-value=0.087 Score=47.34 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHHhhccCCCEEEEecCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg~ 133 (216)
..++|+|+|+.|.||..++..|+.++. ++.+++.. +.++.+.+++||+||.+.|.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 457999999944479999999987663 56666432 23457889999999999986
Q ss_pred CC
Q 027976 134 AN 135 (216)
Q Consensus 134 p~ 135 (216)
|.
T Consensus 97 ~~ 98 (323)
T PLN00106 97 PR 98 (323)
T ss_pred CC
Confidence 54
No 388
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.24 E-value=0.032 Score=48.10 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||.++|.|+++ -+|+++|..|+++|++|.++.|+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 6899999999983 34999999999999999887654
No 389
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.24 E-value=0.025 Score=47.14 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|++++|+|+++.+|+.++..|+++|++|+++.++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999997778999999999999998888665
No 390
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=95.23 E-value=0.037 Score=46.65 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3689999999999989999999999999999888764
No 391
>PLN02253 xanthoxin dehydrogenase
Probab=95.22 E-value=0.027 Score=48.24 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4689999999999999999999999999998888653
No 392
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.22 E-value=0.039 Score=54.40 Aligned_cols=73 Identities=27% Similarity=0.327 Sum_probs=54.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---cc-
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR- 138 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~---i~- 138 (216)
++|.|||.|.+ |.+++..|.+.| .+|++++++. .++.+.+.++|+||.+++.... +.
T Consensus 4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~ 82 (735)
T PRK14806 4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD 82 (735)
T ss_pred cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999999885 999999999988 3788887652 2345567899999999984321 11
Q ss_pred -CCcccCCcEEEEeeeC
Q 027976 139 -GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 139 -~~~i~~g~vViDvg~~ 154 (216)
...++++.+|+|++..
T Consensus 83 l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 83 LKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHhcCCCcEEEEcCCC
Confidence 1245678899999864
No 393
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.22 E-value=0.041 Score=45.43 Aligned_cols=37 Identities=32% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++.+|+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567899999999999999999999999999888775
No 394
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.22 E-value=0.12 Score=46.86 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=53.6
Q ss_pred ccCCCcHHH-HHHHHHHh---CCCCCCCeEEEEcCC--chhHHHHHHHHHh-CCCEEEEEeCC-----------------
Q 027976 58 LFIPCTPKG-CIELLIRS---GVEIMGKNAVVIGRS--NIVGLPTSLLLQR-HHATVSIVHAL----------------- 113 (216)
Q Consensus 58 ~~~p~Ta~g-~~~~L~~~---~~~l~gk~v~ViG~g--g~vg~~~a~~L~~-~ga~Vti~~~~----------------- 113 (216)
...||=+.+ ++.+.++. +.+++|++++++|-+ +-+.+.++..|.. .|++|+++...
T Consensus 133 ~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~ 212 (338)
T PRK08192 133 NEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGH 212 (338)
T ss_pred CCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCC
Confidence 568998888 44444443 347899999999996 4457777766654 48898888532
Q ss_pred ----CCCHHhhccCCCEEEEec
Q 027976 114 ----TKNPEQITSEADIVIAAA 131 (216)
Q Consensus 114 ----t~~l~~~~~~ADIVIsat 131 (216)
+.++.+++++||+|++..
T Consensus 213 ~~~~~~d~~ea~~~aDvvyt~~ 234 (338)
T PRK08192 213 KITITDQLEGNLDKADILYLTR 234 (338)
T ss_pred eEEEEcCHHHHHccCCEEEEcC
Confidence 146778999999999853
No 395
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.21 E-value=0.06 Score=50.51 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976 60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL 113 (216)
Q Consensus 60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~ 113 (216)
-++|.+|++..+ ++.+.+++||+|+|=|.|. ||..+|..|.+.|++|. +++++
T Consensus 213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence 457999976555 4567889999999999987 59999999999999955 77665
No 396
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.21 E-value=0.035 Score=44.99 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+++||+|+|||.|.+ |.-++..|++.|.+|+++.|+.
T Consensus 164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence 578999999999987 8888999999999999999864
No 397
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.21 E-value=0.039 Score=49.99 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-HhhccCCCEEEEecCCCCc--c
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVANL--V 137 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~ADIVIsatg~p~~--i 137 (216)
...+|.|+|++|.+|+-+..+|.+++. ++..+.+.. .++ .+.+.++|+||.|+|.... +
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 456899999999999999999998664 343332221 011 2345789999999975421 2
Q ss_pred cCCcccCCcEEEEeeeCCc
Q 027976 138 RGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 138 ~~~~i~~g~vViDvg~~~~ 156 (216)
-++..+.|+.|||.+-...
T Consensus 86 ~~~~~~~g~~VIDlS~~fR 104 (344)
T PLN02383 86 GPIAVDKGAVVVDNSSAFR 104 (344)
T ss_pred HHHHHhCCCEEEECCchhh
Confidence 2233457899999986554
No 398
>PRK12742 oxidoreductase; Provisional
Probab=95.20 E-value=0.038 Score=45.79 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 367999999999888899999999999999876643
No 399
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.19 E-value=0.065 Score=47.58 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=46.6
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHHhhc
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQIT 121 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~ 121 (216)
..+.+|+.|+|-|+|.-+||.+|..++++|+++.+.+.+. +.+++..
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999765553321 1234666
Q ss_pred cCCCEEEEecCC
Q 027976 122 SEADIVIAAAGV 133 (216)
Q Consensus 122 ~~ADIVIsatg~ 133 (216)
.+-||+||.+|.
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 778999998884
No 400
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.021 Score=49.83 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999998888999999999999998887654
No 401
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.17 E-value=0.033 Score=46.20 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE-eCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~ 113 (216)
++.+|+++|+|+++.+|+.++..|+++|++|.+. .|+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~ 39 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN 39 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4678999999998889999999999999998887 654
No 402
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=95.16 E-value=0.0067 Score=43.58 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=24.4
Q ss_pred hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCc
Q 027976 2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDG 41 (216)
Q Consensus 2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg 41 (216)
+++.+|..++.|++|++|+| .+..++++.+++ .+-+.+
T Consensus 41 ~~~~~~~~~~~G~~VT~P~K--~~~~~~~D~~~~~A~~igA 79 (83)
T PF08501_consen 41 FLDALRAPNFRGLNVTMPHK--EAAIPYLDELSPSAKAIGA 79 (83)
T ss_dssp HHHHHHHTTESEEEE-TTST--THHGGGSSEE-HHHHHHTS
T ss_pred HHHHHhcCCCCeeeecchHH--HHHHHHhccCCHHHHHhCC
Confidence 35678889999999999999 333445555555 444433
No 403
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.14 E-value=0.017 Score=51.62 Aligned_cols=90 Identities=24% Similarity=0.284 Sum_probs=61.4
Q ss_pred HHHHHHHHH----------hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976 65 KGCIELLIR----------SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------------- 113 (216)
Q Consensus 65 ~g~~~~L~~----------~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------------- 113 (216)
.+++..+.+ .+....+.+++++|.|-+ |..++..-...|+-|+-..-.
T Consensus 139 ~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee 217 (356)
T COG3288 139 IAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEE 217 (356)
T ss_pred HHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccc
Confidence 445666655 334567888999999765 876666555567766654211
Q ss_pred ---------C--------CCHHhhccCCCEEEEecC---C--CCcccCCcc---cCCcEEEEeeeCC
Q 027976 114 ---------T--------KNPEQITSEADIVIAAAG---V--ANLVRGSWL---KPGAVVLDVGTCP 155 (216)
Q Consensus 114 ---------t--------~~l~~~~~~ADIVIsatg---~--p~~i~~~~i---~~g~vViDvg~~~ 155 (216)
+ +.+.+++++.||||++.= + |.+++.+|+ |||.+++|+....
T Consensus 218 ~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~ 284 (356)
T COG3288 218 SAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET 284 (356)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence 0 124578999999998763 3 335888885 8999999998643
No 404
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.14 E-value=0.14 Score=47.33 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=56.6
Q ss_pred CccCCCcHHH-HHHHHHHhCC--CCCCCeEEEEcC-------CchhHHHHHHHHHhCCCEEEEEeCC-------------
Q 027976 57 PLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGR-------SNIVGLPTSLLLQRHHATVSIVHAL------------- 113 (216)
Q Consensus 57 ~~~~p~Ta~g-~~~~L~~~~~--~l~gk~v~ViG~-------gg~vg~~~a~~L~~~ga~Vti~~~~------------- 113 (216)
+...||=+.+ ++.+.++.+- .++|++|+++|. +..|++.++.+|...|++|+++...
T Consensus 161 ~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~ 240 (395)
T PRK07200 161 DIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAK 240 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHH
Confidence 3567888887 5555566653 389999999964 4467889999999999999998533
Q ss_pred ------------CCCHHhhccCCCEEEEec
Q 027976 114 ------------TKNPEQITSEADIVIAAA 131 (216)
Q Consensus 114 ------------t~~l~~~~~~ADIVIsat 131 (216)
+.++.+++++||+|.+-+
T Consensus 241 ~~~~~~G~~i~~~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 241 KNAKASGGSFRQVNSMEEAFKDADIVYPKS 270 (395)
T ss_pred HHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 246678999999999653
No 405
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=95.14 E-value=0.12 Score=44.69 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=58.1
Q ss_pred CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCH----H
Q 027976 62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNP----E 118 (216)
Q Consensus 62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l----~ 118 (216)
+.+..++..++... --.|.+++|.|+++.+|..++.++...|++|+++.+.. .++ .
T Consensus 123 ~~~~ta~~~~~~~~-~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 201 (324)
T cd08292 123 AMPLSALMLLDFLG-VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVR 201 (324)
T ss_pred ccHHHHHHHHHhhC-CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHH
Confidence 33444444554322 23688999999988889999999999999876664321 111 1
Q ss_pred hhc--cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976 119 QIT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 119 ~~~--~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~ 153 (216)
+.. +..|+|+.++|.+.. -.-+.++++..+++++.
T Consensus 202 ~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 202 EAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred HHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEec
Confidence 222 247999988886532 11244567777888874
No 406
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.12 E-value=0.047 Score=45.12 Aligned_cols=37 Identities=32% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++.+|+.++..|+++|++|++..++
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999999999999999998777554
No 407
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.10 E-value=0.042 Score=45.81 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 578999999999999999999999999998887554
No 408
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.08 E-value=0.045 Score=48.95 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=52.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC----CCHHhhccCCCEEEEecCCCCc--ccCCcccCCcEEEEeee
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----KNPEQITSEADIVIAAAGVANL--VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----~~l~~~~~~ADIVIsatg~p~~--i~~~~i~~g~vViDvg~ 153 (216)
.+|.|+|++|..|.-+.++|.++. .++.-..+.. .+..+.+.++|+++-|++.... +-+...+.|..|||++.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSa 81 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAST 81 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence 379999999999999999998875 4533333221 2344556789999999975321 22223356899999986
Q ss_pred CCc
Q 027976 154 CPV 156 (216)
Q Consensus 154 ~~~ 156 (216)
..+
T Consensus 82 dfR 84 (310)
T TIGR01851 82 AYR 84 (310)
T ss_pred HHh
Confidence 654
No 409
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.08 E-value=0.039 Score=41.82 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=48.1
Q ss_pred eEEEEcCCchhHHHHHHHHHhC-CCEEEEE-eCCC---CC-------H--------H-hhc--cCCCEEEEecCCCCc--
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HALT---KN-------P--------E-QIT--SEADIVIAAAGVANL-- 136 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~-~~~t---~~-------l--------~-~~~--~~ADIVIsatg~p~~-- 136 (216)
++.|+|++|.+|+.++..|.+. +.+++.+ .+.. +. + . +.+ .++|+||.+++....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 4789998777798888888874 6775444 3221 00 0 0 112 378999999985431
Q ss_pred -cc--CCcccCCcEEEEeeeCCc
Q 027976 137 -VR--GSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 137 -i~--~~~i~~g~vViDvg~~~~ 156 (216)
+. ...+++|.+|||++....
T Consensus 81 ~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 81 IAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred HHHHHHhhhcCCCEEEECCcccc
Confidence 11 123478999999997654
No 410
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.06 E-value=0.069 Score=46.99 Aligned_cols=93 Identities=26% Similarity=0.298 Sum_probs=59.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCC-------------------C---
Q 027976 60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-------------------N--- 116 (216)
Q Consensus 60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-------------------~--- 116 (216)
++|....++..+++.++ ..|.+++|.|+|. +|..++.++...|++ |+++.+..+ +
T Consensus 145 l~~~~~ta~~~l~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~ 222 (339)
T cd08239 145 LLCGIGTAYHALRRVGV-SGRDTVLVVGAGP-VGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQE 222 (339)
T ss_pred hcchHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHH
Confidence 34444444555655443 4599999999865 699999999999998 877654311 1
Q ss_pred HHhhcc--CCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976 117 PEQITS--EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 117 l~~~~~--~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~ 154 (216)
+.+... ..|++|.++|.+..+. -+.++++..++-++..
T Consensus 223 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 223 IRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred HHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence 112222 4799999998764322 2456777667777754
No 411
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.06 E-value=0.088 Score=47.29 Aligned_cols=76 Identities=22% Similarity=0.237 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHh----hcc-CCCEEEEecC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ----ITS-EADIVIAAAG 132 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~----~~~-~ADIVIsatg 132 (216)
-.|++|+|.|+|. +|..++.++...|+ +|+++.++. .++.+ ... .+|++|.++|
T Consensus 190 ~~g~~VlV~G~G~-vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 190 RPGQSVAVVGLGG-VGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 3689999999865 69998888888998 577664331 12212 111 3799999998
Q ss_pred CCCccc--CCcccCCcEEEEeeeC
Q 027976 133 VANLVR--GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 133 ~p~~i~--~~~i~~g~vViDvg~~ 154 (216)
.+..+. -+.++++..++-++..
T Consensus 269 ~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 269 SVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred ChHHHHHHHHHHhcCCEEEEEccC
Confidence 764332 2456676666667653
No 412
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.05 E-value=0.06 Score=46.68 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAG 132 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg 132 (216)
++++|+|++|.+|+.++..|+++|.+|+.+.|... ++.+.++.+|+||...+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 36999999888999999999999999888866421 24456778899997765
No 413
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.04 E-value=0.065 Score=50.20 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEE
Q 027976 60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI 109 (216)
Q Consensus 60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti 109 (216)
-++|++|+...+ ++.+.+++|++|+|=|.|. ||..+|..|.+.|++|..
T Consensus 204 ~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 204 PEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVT 256 (445)
T ss_pred CCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence 457999876554 5668899999999999987 599999999999999555
No 414
>PRK05086 malate dehydrogenase; Provisional
Probab=95.02 E-value=0.085 Score=47.05 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=39.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHh-CC--CEEEEEeCC-----------------------CCCHHhhccCCCEEEEecCCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~-~g--a~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg~p 134 (216)
++++|||++|.+|..++..|.. .+ ..++++.+. ..++.+.++++|+||.+.|.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 4799999966679999988754 33 356666431 124467888999999999975
Q ss_pred C
Q 027976 135 N 135 (216)
Q Consensus 135 ~ 135 (216)
+
T Consensus 81 ~ 81 (312)
T PRK05086 81 R 81 (312)
T ss_pred C
Confidence 4
No 415
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.02 E-value=0.075 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.|++|+|||+|-+ |..+|..|++.|++|+++.+
T Consensus 326 ~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~ 358 (654)
T PRK12769 326 SDKRVAIIGAGPA-GLACADVLARNGVAVTVYDR 358 (654)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence 6899999999998 99999999999999999965
No 416
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.01 E-value=0.066 Score=45.62 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=42.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCCCEEEEecCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~ADIVIsatg~p 134 (216)
|+|.|+.|.+|+.++..|+++|.+|+...|... .+.+.+++.|+||..++.+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~ 68 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP 68 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence 589999999999999999999999998877532 1234567799999888754
No 417
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.00 E-value=0.088 Score=47.42 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHHhhccCCCEEEE
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIA 129 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~ADIVIs 129 (216)
.+++|+|.|++|.+|.-+...|+.+|++|.-.-|... .+.+.++.+|.|+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 6789999999999999999999999999888866531 24578889999994
Q ss_pred ecC
Q 027976 130 AAG 132 (216)
Q Consensus 130 atg 132 (216)
+..
T Consensus 85 ~As 87 (327)
T KOG1502|consen 85 TAS 87 (327)
T ss_pred eCc
Confidence 443
No 418
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.99 E-value=0.047 Score=47.88 Aligned_cols=38 Identities=34% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
..+++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~ 44 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDV 44 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 45789999999999999999999999999999888765
No 419
>PRK08278 short chain dehydrogenase; Provisional
Probab=94.99 E-value=0.049 Score=46.77 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 4688999999999999999999999999998888764
No 420
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.99 E-value=0.25 Score=45.61 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCC-------------------------
Q 027976 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVE------------------------- 77 (216)
Q Consensus 23 ~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~------------------------- 77 (216)
+.|..++.+.|-.++.+.- |..|.| .|+.-.| +|-+-.+.++..++++.+
T Consensus 231 g~D~~~V~~gIGlD~RIG~-~fl~aG---~GyGGsC-fPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~ 305 (414)
T COG1004 231 GADVKQVAEGIGLDPRIGN-HFLNAG---FGYGGSC-FPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNH 305 (414)
T ss_pred CCCHHHHHHHcCCCchhhH-hhCCCC---CCCCCcC-CcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --CCCCeEEEEcCCc---------hhHHHHHHHHHhCCCEEEEEeCC--------------CCCHHhhccCCCEEEEecC
Q 027976 78 --IMGKNAVVIGRSN---------IVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAAG 132 (216)
Q Consensus 78 --l~gk~v~ViG~gg---------~vg~~~a~~L~~~ga~Vti~~~~--------------t~~l~~~~~~ADIVIsatg 132 (216)
++||++.|+|-.- +-...++.+|.++|++|.+.... ..+..+.+++||++|..|.
T Consensus 306 ~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 306 LGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred cCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Q ss_pred CCCcccCCccc---CCcEEEE
Q 027976 133 VANLVRGSWLK---PGAVVLD 150 (216)
Q Consensus 133 ~p~~i~~~~i~---~g~vViD 150 (216)
...+-..+|-+ ++.+|+|
T Consensus 386 w~ef~~~d~~~~~m~~~~v~D 406 (414)
T COG1004 386 WDEFRDLDFEKLLMKTPVVID 406 (414)
T ss_pred HHHHhccChhhhhccCCEEEe
No 421
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.046 Score=46.70 Aligned_cols=35 Identities=31% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 57889999999999999999999999998887664
No 422
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.97 E-value=0.033 Score=46.99 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|+|+++.+|+.++..|+++|++|.++.+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3679999999999999999999999999998877654
No 423
>PRK06153 hypothetical protein; Provisional
Probab=94.96 E-value=0.034 Score=51.19 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEE
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV 110 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~ 110 (216)
.|++++|+|||.||. |..++..|++.|. +++++
T Consensus 173 kL~~~~VaIVG~GG~-GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 173 KLEGQRIAIIGLGGT-GSYILDLVAKTPVREIHLF 206 (393)
T ss_pred HHhhCcEEEEcCCcc-HHHHHHHHHHcCCCEEEEE
Confidence 378999999999997 9999999999996 68888
No 424
>PRK08226 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.049 Score=45.99 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 678999999999999999999999999999888665
No 425
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.03 Score=49.95 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999998889999999999999999888765
No 426
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.94 E-value=0.038 Score=45.89 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++++++++|.|+++.+|+.++..|+++|+.|.+..++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~ 39 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR 39 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence 4689999999999989999999999999988776443
No 427
>PRK08643 acetoin reductase; Validated
Probab=94.94 E-value=0.036 Score=46.67 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+|+++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 7899999999999999999999999998888664
No 428
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.92 E-value=0.073 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.185 Sum_probs=42.3
Q ss_pred cCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976 59 FIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV 110 (216)
Q Consensus 59 ~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~ 110 (216)
--+.|++|+...++ +.+.+++|++|+|.|.|. ||+.+|..|.+.|++|+.+
T Consensus 207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav 261 (445)
T PRK09414 207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC 261 (445)
T ss_pred CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence 45689988766554 557889999999999987 5999999999999996655
No 429
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.068 Score=45.72 Aligned_cols=35 Identities=17% Similarity=-0.009 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+|.++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 46889999999999999999999999998888665
No 430
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.90 E-value=0.071 Score=37.39 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=29.0
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+++|||+|-+ |.-+|..|++.|.+|+++++..
T Consensus 1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccc
Confidence 6899999875 9999999999999999998875
No 431
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=94.90 E-value=0.14 Score=45.70 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=55.7
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------CC
Q 027976 58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------TK 115 (216)
Q Consensus 58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------t~ 115 (216)
...||=+.+=+--++++.-.++|++++++|-...+.+.++..|...|++|+++... +.
T Consensus 130 ~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 130 LSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred CCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 35788777733344333346999999999996668999999999999999998532 14
Q ss_pred CHHhhccCCCEEEEe
Q 027976 116 NPEQITSEADIVIAA 130 (216)
Q Consensus 116 ~l~~~~~~ADIVIsa 130 (216)
++.+.+++||+|.+-
T Consensus 210 d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 210 DPKEAVKGADVVYTD 224 (304)
T ss_pred CHHHHhCCCCEEEec
Confidence 667889999999975
No 432
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.88 E-value=0.089 Score=47.15 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=41.0
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC-C-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH-A-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG 132 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g-a-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg 132 (216)
++|.|||+|. ||.++|++|..++ + ++.+++... .+ .+.++.||+||-+.|
T Consensus 1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence 4799999966 6999999998887 4 677775441 12 578999999998888
Q ss_pred CCC
Q 027976 133 VAN 135 (216)
Q Consensus 133 ~p~ 135 (216)
.|.
T Consensus 79 ~pr 81 (313)
T COG0039 79 VPR 81 (313)
T ss_pred CCC
Confidence 654
No 433
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=94.88 E-value=0.14 Score=44.18 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------C--C----HHhh
Q 027976 64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------K--N----PEQI 120 (216)
Q Consensus 64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~--~----l~~~ 120 (216)
+..+...+.+......|.+++|.|+++.+|..++..+..+|+.|++..++. . + +.+.
T Consensus 123 ~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (323)
T cd05282 123 PLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEA 202 (323)
T ss_pred HHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHH
Confidence 333344444444445788999999988889999999999999876654321 0 1 1122
Q ss_pred c--cCCCEEEEecCCCCcc-cCCcccCCcEEEEeeeC
Q 027976 121 T--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 121 ~--~~ADIVIsatg~p~~i-~~~~i~~g~vViDvg~~ 154 (216)
. +..|+++..+|.+... ..++++++..+++++..
T Consensus 203 ~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~ 239 (323)
T cd05282 203 TGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL 239 (323)
T ss_pred hcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence 2 3579999988865431 23456777778888754
No 434
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=94.88 E-value=0.21 Score=42.49 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CC----HHhhc--
Q 027976 67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN----PEQIT-- 121 (216)
Q Consensus 67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~----l~~~~-- 121 (216)
+...+.+...-.+|++++|.|+++.+|..++.++...|++|++..++. .+ +.+..
T Consensus 132 a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 211 (325)
T cd08253 132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAG 211 (325)
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCC
Confidence 344444433334789999999877789999999999999987765421 11 11222
Q ss_pred cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976 122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC 154 (216)
Q Consensus 122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~ 154 (216)
+..|++++++|.... ...++++++..+++++..
T Consensus 212 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~ 245 (325)
T cd08253 212 QGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG 245 (325)
T ss_pred CceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence 247888888775432 223456666777888753
No 435
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.058 Score=45.08 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 678999999998778999999999999998887664
No 436
>PRK06720 hypothetical protein; Provisional
Probab=94.86 E-value=0.045 Score=44.41 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK 115 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~ 115 (216)
..++||.++|.|+++-+|++++..|++.|++|.++.++.+
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~ 51 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE 51 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3478999999999887899999999999999998877643
No 437
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=94.86 E-value=0.059 Score=47.83 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEEcC---CchhHHHHHHHHHhCCCEEEEE
Q 027976 75 GVEIMGKNAVVIGR---SNIVGLPTSLLLQRHHATVSIV 110 (216)
Q Consensus 75 ~~~l~gk~v~ViG~---gg~vg~~~a~~L~~~ga~Vti~ 110 (216)
..+++||.++|-|+ +|+ |+++|..|+++|++|.+.
T Consensus 4 ~~~l~gk~alITGa~~s~GI-G~a~A~~la~~Ga~Vv~~ 41 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGY-GWAIAKALAAAGAEILVG 41 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcH-HHHHHHHHHHCCCEEEEE
Confidence 45689999999999 665 999999999999998873
No 438
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=94.84 E-value=0.084 Score=47.79 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCC-c---cc--CCcccCCcE
Q 027976 93 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVAN-L---VR--GSWLKPGAV 147 (216)
Q Consensus 93 g~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~-~---i~--~~~i~~g~v 147 (216)
|.++|..|++.|.+|++++++. .+..+.+++||+||.+++.+. . +. .+.++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~I 111 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAV 111 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCE
Confidence 4566666666666666665532 134567889999999998654 1 11 134577899
Q ss_pred EEEeee
Q 027976 148 VLDVGT 153 (216)
Q Consensus 148 ViDvg~ 153 (216)
|+|++.
T Consensus 112 VId~ST 117 (342)
T PRK12557 112 ICNTCT 117 (342)
T ss_pred EEEecC
Confidence 999875
No 439
>PRK07677 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.047 Score=45.96 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 6899999999999999999999999999888764
No 440
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.84 E-value=0.062 Score=54.81 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
-.||+|+|||+|-+ |.++|..|+++|.+|+|+.+.
T Consensus 304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence 46999999999998 999999999999999999653
No 441
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.055 Score=47.09 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999999999989999999999999998888654
No 442
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.047 Score=46.92 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 36899999998888999999999999999988775
No 443
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.83 E-value=0.033 Score=46.71 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++.+|..++..|+++|++|.++.|+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999999999998888765
No 444
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.057 Score=44.81 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
++++++++|.|+++.+|+.++..|+++|++|++..+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 467899999999999999999999999999877543
No 445
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.82 E-value=0.054 Score=46.21 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
+++||.++|.|++ |+ |++++..|+++|++|.++.|
T Consensus 4 ~~~~k~~lItGa~~s~GI-G~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSI-AWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEecC
Confidence 5789999999985 64 99999999999999988754
No 446
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.82 E-value=0.082 Score=48.31 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=51.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCC---------------------------------CCCHHhh
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL---------------------------------TKNPEQI 120 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~---------------------------------t~~l~~~ 120 (216)
.+|+|||+|.. |.++|..|++.+ .+|++..++ +.++.+.
T Consensus 12 ~ki~ViGaG~w-GtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 12 LKVSVIGSGNW-GSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 58999999886 999999999886 577775332 1356788
Q ss_pred ccCCCEEEEecCCCCc------ccCC-cccCCcEEEEee
Q 027976 121 TSEADIVIAAAGVANL------VRGS-WLKPGAVVLDVG 152 (216)
Q Consensus 121 ~~~ADIVIsatg~p~~------i~~~-~i~~g~vViDvg 152 (216)
+++||+||-|++...+ +.+. .++++.++|-+.
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence 9999999999986431 3321 455566676664
No 447
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.81 E-value=0.046 Score=48.96 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=51.5
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEE-eCCCCC---HHhhccCCCEEEEecCCCC--cccCCcccCCcEEEEeee
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIV-HALTKN---PEQITSEADIVIAAAGVAN--LVRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~-~~~t~~---l~~~~~~ADIVIsatg~p~--~i~~~~i~~g~vViDvg~ 153 (216)
-+|.|+|++|.+|.-+.++|.++. .++.-. .+...+ ..+...++|+++.|++... .+-+...+.|..|||++.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST 82 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence 479999999999999999998886 343333 222112 2334467999999997432 122233457899999987
Q ss_pred CCc
Q 027976 154 CPV 156 (216)
Q Consensus 154 ~~~ 156 (216)
..+
T Consensus 83 dfR 85 (313)
T PRK11863 83 AHR 85 (313)
T ss_pred hhh
Confidence 765
No 448
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.81 E-value=0.044 Score=51.18 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||+|+|||+|.+ |--++..|.+.|++|+++.|+
T Consensus 171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs 207 (443)
T COG2072 171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS 207 (443)
T ss_pred cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence 4789999999999988 999999999999999999876
No 449
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.80 E-value=0.08 Score=46.83 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=40.4
Q ss_pred EEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHHhhccCCCEEEEecCCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
+.|||+|. ||.+++..|+..| .++++++.+. .+ .+.+++||+||.+.|.|.
T Consensus 1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 47999987 6999999999988 4688886542 12 468899999999999753
No 450
>PRK09135 pteridine reductase; Provisional
Probab=94.80 E-value=0.056 Score=44.88 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
..+++++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 467899999999999999999999999999888654
No 451
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.80 E-value=0.1 Score=46.53 Aligned_cols=76 Identities=25% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC-------------------CCH----Hhhcc--CCCEEEEec
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT-------------------KNP----EQITS--EADIVIAAA 131 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t-------------------~~l----~~~~~--~ADIVIsat 131 (216)
-.|++++|.|+|. +|..++.++...|++ |+.+.++. .+. .+... ..|++|.++
T Consensus 175 ~~g~~VlV~G~g~-vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 175 KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 4689999999865 699999988889985 76664321 122 12222 479999999
Q ss_pred CCCCccc--CCcccCCcEEEEeeeC
Q 027976 132 GVANLVR--GSWLKPGAVVLDVGTC 154 (216)
Q Consensus 132 g~p~~i~--~~~i~~g~vViDvg~~ 154 (216)
|.+..+. -+.++++-.++.+|..
T Consensus 254 g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 254 GRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCHHHHHHHHHHhccCCEEEEECCC
Confidence 9764332 2356777777777754
No 452
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.78 E-value=0.037 Score=48.92 Aligned_cols=57 Identities=35% Similarity=0.458 Sum_probs=42.3
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE----------------eCCC----------CCHHhhccCCCEEEEec
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------------HALT----------KNPEQITSEADIVIAAA 131 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~----------------~~~t----------~~l~~~~~~ADIVIsat 131 (216)
-.+.+|.|+|++|-+|.|+..+|. ....|+-. |.+| +.|++.++.||+||-+.
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA 104 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA 104 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence 457789999999888999987665 43323222 2222 36889999999999999
Q ss_pred CCCC
Q 027976 132 GVAN 135 (216)
Q Consensus 132 g~p~ 135 (216)
|.|.
T Consensus 105 GVPR 108 (345)
T KOG1494|consen 105 GVPR 108 (345)
T ss_pred CCCC
Confidence 9765
No 453
>PRK06483 dihydromonapterin reductase; Provisional
Probab=94.77 E-value=0.054 Score=45.05 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT 114 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t 114 (216)
+|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999988889999999999999998887754
No 454
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.097 Score=48.19 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHH--------------hhccCCCEEEEecCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------QITSEADIVIAAAGVA 134 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~--------------~~~~~ADIVIsatg~p 134 (216)
+.++|+|+|.|++ |+++|++|.++|++|+.+++....+. ...+++|++|-+.|.+
T Consensus 2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 3578999999997 99999999999999999886542111 1135578888776644
No 455
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.74 E-value=0.075 Score=45.88 Aligned_cols=50 Identities=26% Similarity=0.269 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHH----HhCCC-CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976 60 IPCTPKGCIELLI----RSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV 110 (216)
Q Consensus 60 ~p~Ta~g~~~~L~----~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~ 110 (216)
.++|++|+...++ +.+.+ ++|++++|-|.|. ||..++..|.+.|++|..+
T Consensus 7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~-VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGN-VGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSH-HHHHHHHHHHHTTEEEEEE
T ss_pred CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEE
Confidence 5678898877665 43555 9999999999977 5999999999999984433
No 456
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.73 E-value=0.088 Score=45.18 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=40.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCC---------------CCHHhhccCCCEEEEecCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~ 133 (216)
.++.|||.|.+ |..++..|.+.| ..|++++|+. .+..+.+.++|+||-+++.
T Consensus 3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~ 72 (267)
T PRK11880 3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP 72 (267)
T ss_pred CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence 47999999875 999999999888 5788887752 2334567889999988864
No 457
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.72 E-value=0.12 Score=46.16 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=40.3
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV 133 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~ 133 (216)
.+|.|||+|. ||..+|..|+..+. ++.+++.+. .+ .+.+++|||||.+.|.
T Consensus 4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~adivvitaG~ 81 (312)
T cd05293 4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANSKVVIVTAGA 81 (312)
T ss_pred CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCCCEEEECCCC
Confidence 4899999966 69999999988884 577775431 12 3568999999998886
Q ss_pred C
Q 027976 134 A 134 (216)
Q Consensus 134 p 134 (216)
|
T Consensus 82 ~ 82 (312)
T cd05293 82 R 82 (312)
T ss_pred C
Confidence 4
No 458
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.064 Score=44.55 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.+++|+++|.|+++.+|+.++..|+++|++|.++.+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 467899999999888999999999999999877644
No 459
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.68 E-value=0.12 Score=41.58 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=48.8
Q ss_pred CCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------------CCCHHhhccCCCEEEEe
Q 027976 79 MGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------------TKNPEQITSEADIVIAA 130 (216)
Q Consensus 79 ~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------------t~~l~~~~~~ADIVIsa 130 (216)
+|++++++|-+ +.+.++++..|...|++++++... +.++.+.+++||+|++.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 47788888853 445888888888888887777322 24677999999999865
Q ss_pred cCC-C---C----------c-ccCCcc---cCCcEEEEeee
Q 027976 131 AGV-A---N----------L-VRGSWL---KPGAVVLDVGT 153 (216)
Q Consensus 131 tg~-p---~----------~-i~~~~i---~~g~vViDvg~ 153 (216)
.=. . + + ++.+.+ +++++++-+.-
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence 433 1 0 3 555544 46777776653
No 460
>PRK08303 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.062 Score=47.38 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 35789999999998878999999999999999888764
No 461
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.65 E-value=0.095 Score=46.15 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=39.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
|.|||+|. +|..++..|+..+. +|++++.+. .+ .+.+++||+||.+.|.|.
T Consensus 1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~p~ 78 (300)
T cd01339 1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCCCC
Confidence 57999966 59999999888774 888886541 23 356899999999988654
No 462
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.63 E-value=0.11 Score=50.64 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.||+|+|||+|-+ |..+|..|+++|++|+++.+.
T Consensus 309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH 342 (639)
T ss_pred CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence 5999999999987 999999999999999999643
No 463
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.63 E-value=0.047 Score=45.55 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=30.9
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+|+++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999888765
No 464
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.62 E-value=0.15 Score=45.61 Aligned_cols=47 Identities=17% Similarity=0.047 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 66 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 66 g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.++..|.+....-.|.+++|.|+++.+|..++.++...|++|+.+.+
T Consensus 145 TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 145 TAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 33445544333357999999999777899999989999998766543
No 465
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.60 E-value=0.12 Score=46.43 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=41.8
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEeCCC--------------------------CCHHhhccCCCEE
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHALT--------------------------KNPEQITSEADIV 127 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~t--------------------------~~l~~~~~~ADIV 127 (216)
++|.|||++|.||..++..|+..+. ++.+.+... .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 5899999955679999999988773 577775521 1235789999999
Q ss_pred EEecCCCC
Q 027976 128 IAAAGVAN 135 (216)
Q Consensus 128 Isatg~p~ 135 (216)
|.+.|.|.
T Consensus 83 vitaG~~~ 90 (322)
T cd01338 83 LLVGAKPR 90 (322)
T ss_pred EEeCCCCC
Confidence 99999754
No 466
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.052 Score=45.84 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=30.1
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
|+++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999999999999888664
No 467
>PRK09620 hypothetical protein; Provisional
Probab=94.59 E-value=0.17 Score=43.18 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=44.0
Q ss_pred CCCCeEEEEcCC----------------chhHHHHHHHHHhCCCEEEEEeCCC----C---------------C----HH
Q 027976 78 IMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT----K---------------N----PE 118 (216)
Q Consensus 78 l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t----~---------------~----l~ 118 (216)
++||+|+|-+.+ |.+|..+|..|..+|++|++++... . + +.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~ 80 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMK 80 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHH
Confidence 478999998775 7789999999999999999876421 0 1 22
Q ss_pred hhcc--CCCEEEEecCCCCc
Q 027976 119 QITS--EADIVIAAAGVANL 136 (216)
Q Consensus 119 ~~~~--~ADIVIsatg~p~~ 136 (216)
+.++ ++|+||.+.....|
T Consensus 81 ~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 81 SIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHhcccCCCEEEECccccce
Confidence 3443 57999988776655
No 468
>PRK07791 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.056 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence 67999999999999999999999999999888754
No 469
>PRK06444 prephenate dehydrogenase; Provisional
Probab=94.57 E-value=0.084 Score=44.17 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=43.4
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccC-CcEEEEeeeC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC 154 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~-g~vViDvg~~ 154 (216)
++.|||+.|-+|+.++..|.+.|..|+ +++||+||-|++.... .+++++ ..+++|++.-
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~--~~~i~~~~~~v~Dv~Sv 61 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAA--LNYIESYDNNFVEISSV 61 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHH--HHHHHHhCCeEEecccc
Confidence 689999955569999999999999886 4689999999985321 122222 2368898864
No 470
>PRK07985 oxidoreductase; Provisional
Probab=94.57 E-value=0.065 Score=46.74 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence 478999999999998999999999999999887654
No 471
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.06 Score=45.31 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~ 113 (216)
.+++|+++|.|+++.+|+.++..|+++|++ |.++.|.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 368999999999988999999999999998 8888765
No 472
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.57 E-value=0.071 Score=44.50 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
+++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 57899999999998999999999999999877543
No 473
>PRK07577 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.075 Score=43.91 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999999999888765
No 474
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.54 E-value=0.067 Score=45.07 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 6889999999999999999999999998888664
No 475
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.54 E-value=0.054 Score=48.95 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCC---------------CCHHhh-ccCCCEEEEecCCCC--cc
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQI-TSEADIVIAAAGVAN--LV 137 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~-~~~ADIVIsatg~p~--~i 137 (216)
+..+|.|+|++|.+|+-+.++|.++. .++....+.. .++.+. ..++|+++.|+|..- .+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 46789999999999999999999842 4655554431 012222 267899999997532 13
Q ss_pred cCCcccCCcEEEEeeeCCc
Q 027976 138 RGSWLKPGAVVLDVGTCPV 156 (216)
Q Consensus 138 ~~~~i~~g~vViDvg~~~~ 156 (216)
-++..+.|..|||.+-..+
T Consensus 83 ~~~~~~~g~~VIDlS~~fR 101 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFA 101 (336)
T ss_pred HHHHHHCCCEEEECChHhc
Confidence 3334467999999986654
No 476
>PRK08328 hypothetical protein; Provisional
Probab=94.54 E-value=0.064 Score=45.73 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~ 113 (216)
.+++++|+|+|+||. |.+++..|+..|. ++++++..
T Consensus 24 ~L~~~~VlIiG~GGl-Gs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 24 KLKKAKVAVVGVGGL-GSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCC
Confidence 367899999999996 9999999999996 69998543
No 477
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=94.53 E-value=0.11 Score=43.14 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=48.2
Q ss_pred CCCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhc
Q 027976 78 IMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQIT 121 (216)
Q Consensus 78 l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~ 121 (216)
|+||+|+|-+. +|-.|..+|..+..+||+|+.++.... .+.+.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~ 80 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL 80 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence 46777777654 345699999999999999999976531 234667
Q ss_pred cCCCEEEEecCCCCcc----cCCcccC---CcEEEEeeeCCc
Q 027976 122 SEADIVIAAAGVANLV----RGSWLKP---GAVVLDVGTCPV 156 (216)
Q Consensus 122 ~~ADIVIsatg~p~~i----~~~~i~~---g~vViDvg~~~~ 156 (216)
+++|++|.+.-...|- ...-+++ ....+.+.-+|+
T Consensus 81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~pk 122 (185)
T PF04127_consen 81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTPK 122 (185)
T ss_dssp GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-GG
T ss_pred CcceeEEEecchhheeehhccccccccccCcceEEEEEeChH
Confidence 8899999887765552 2234552 357788887774
No 478
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.063 Score=45.46 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCCc-hhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSN-IVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg-~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+++|+++|.|+++ -+|+.++..|+++|++|+++.++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999853 35999999999999998888654
No 479
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.50 E-value=0.069 Score=47.50 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||+++|.|++|.+|+.++..|+++|++|+++.|.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999998888999999999999999887653
No 480
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.059 Score=46.22 Aligned_cols=35 Identities=14% Similarity=-0.082 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 46889999999999999999999999999888764
No 481
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.50 E-value=0.1 Score=48.49 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=53.0
Q ss_pred CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHHhhccCCCEEEEe
Q 027976 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA 130 (216)
Q Consensus 80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~ADIVIsa 130 (216)
.-+|.|||-|-+ |.|+|..|+. +.+|+.++++.. ...+.+++||++|.+
T Consensus 6 ~mkI~vIGlGyv-GlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYV-GLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcc-hHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 367999999875 9999999877 688999876521 012457899999999
Q ss_pred cCCCC---------ccc------CCcccCCcEEEEeeeCC
Q 027976 131 AGVAN---------LVR------GSWLKPGAVVLDVGTCP 155 (216)
Q Consensus 131 tg~p~---------~i~------~~~i~~g~vViDvg~~~ 155 (216)
+|.|. .+. ...+++|.+|||.+.-+
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 99772 111 12346788888876654
No 482
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.49 E-value=0.035 Score=49.30 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK 115 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~ 115 (216)
.|+.++|.|+++-+|+.+|..|+++|++|.++.|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~ 88 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPD 88 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 6899999999988899999999999999999887643
No 483
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=94.47 E-value=0.076 Score=44.86 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
+++||.++|.|+++-+|++++..|+++|++|..+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence 578999999999998999999999999999877643
No 484
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.47 E-value=0.074 Score=45.37 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.++||.++|.|+++ -+|++++..|+++|++|.++.++
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 36799999999973 25999999999999998887654
No 485
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.46 E-value=0.05 Score=47.85 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++.+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 3578999999998888999999999999999888653
No 486
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=94.45 E-value=0.074 Score=46.98 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
++++|+|+|.|++|.+|+.++..|+++|++|+++.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 578999999999988999999999999999887643
No 487
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.44 E-value=0.091 Score=52.00 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=28.7
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|.|||+|-+ |..+|..++..|.+|++...+
T Consensus 314 ~~v~ViGaG~m-G~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIM-GGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred ceEEEECCchh-HHHHHHHHHhCCCeEEEEeCC
Confidence 67999999875 999999999999999999654
No 488
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.44 E-value=0.072 Score=46.06 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||.++|.|++ |+ |+++|..|+++|++|.++.|+
T Consensus 3 l~~k~~lItGas~~~GI-G~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSI-AYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEecC
Confidence 579999999984 65 999999999999999887654
No 489
>PRK06128 oxidoreductase; Provisional
Probab=94.44 E-value=0.074 Score=46.35 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~ 112 (216)
.++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 378999999999988999999999999999877643
No 490
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.44 E-value=0.072 Score=45.77 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++||.++|.|+|+ -+|++++..|+++|++|.++.++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 6799999999972 35999999999999998887654
No 491
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.44 E-value=0.12 Score=46.10 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=40.3
Q ss_pred eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC--------------------C-----CHHhhccCCCEEEEecCCC
Q 027976 82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------K-----NPEQITSEADIVIAAAGVA 134 (216)
Q Consensus 82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t--------------------~-----~l~~~~~~ADIVIsatg~p 134 (216)
+|.|||+|. ||.++|+.|+.++. ++.+++... . .-.+.+++|||||.+.|.|
T Consensus 1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 589999976 69999999988884 577775431 0 1157899999999999975
Q ss_pred C
Q 027976 135 N 135 (216)
Q Consensus 135 ~ 135 (216)
.
T Consensus 80 ~ 80 (307)
T cd05290 80 I 80 (307)
T ss_pred C
Confidence 3
No 492
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=94.43 E-value=0.13 Score=45.78 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN 135 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~ 135 (216)
-..+++=-||-|.. |.+++..|.+.|++|++.+|+. ..-.+..+.+|+||+-++.|.
T Consensus 33 ~s~~~iGFIGLG~M-G~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNM-GSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPK 103 (327)
T ss_pred cccceeeEEeeccc-hHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChH
Confidence 35788999999886 9999999999999999999873 234688999999999999775
No 493
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.42 E-value=0.14 Score=47.33 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
+.+|++.|+|.|+. |++++.+|+++|++|+.++..
T Consensus 4 ~~~~~i~v~G~G~s-G~s~~~~l~~~G~~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLT-GLSCVDFFLARGVTPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCC
Confidence 56899999999998 999999999999999999754
No 494
>PRK08324 short chain dehydrogenase; Validated
Probab=94.41 E-value=0.084 Score=51.77 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
.+.||+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~ 455 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLD 455 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 4689999999987778999999999999998888765
No 495
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.40 E-value=0.18 Score=44.40 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhc---
Q 027976 66 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQIT--- 121 (216)
Q Consensus 66 g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~--- 121 (216)
.++..|.+...--.|.+++|.|+++.+|..++.++..+|++|+.+.+..+ ++.+.+
T Consensus 138 tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 138 TAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRY 217 (338)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHh
Confidence 34455544433357999999999777899999999999998766543211 121111
Q ss_pred --cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976 122 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT 153 (216)
Q Consensus 122 --~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~ 153 (216)
+..|+++.++|.... -.-+.++++..++.+|.
T Consensus 218 ~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 218 FPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence 235777777775321 12244666666667664
No 496
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.068 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976 77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 111 (216)
Q Consensus 77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~ 111 (216)
.+++|+++|.|+++.+|+.++..|+++|++|.++.
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence 46789999999999999999999999999855543
No 497
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.055 Score=45.05 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113 (216)
Q Consensus 79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~ 113 (216)
++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 56899999998888999999999999999998775
No 498
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.38 E-value=0.081 Score=45.07 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEe
Q 027976 77 EIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVH 111 (216)
Q Consensus 77 ~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~ 111 (216)
+++||.++|.|++ +-+|++++..|+++|++|.++.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 4689999999974 2359999999999999988764
No 499
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.37 E-value=0.15 Score=45.29 Aligned_cols=54 Identities=30% Similarity=0.445 Sum_probs=41.4
Q ss_pred CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------------------CCHHhhccCCCEEEEe
Q 027976 81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------------------KNPEQITSEADIVIAA 130 (216)
Q Consensus 81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------------------~~l~~~~~~ADIVIsa 130 (216)
.+|.|+|+.|.||..++..|+..|. +|+.+.+.. .+ .+.+++||+||.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 3799999955679999999999884 477776521 12 3568999999999
Q ss_pred cCCCC
Q 027976 131 AGVAN 135 (216)
Q Consensus 131 tg~p~ 135 (216)
.|.|.
T Consensus 80 ag~p~ 84 (309)
T cd05294 80 AGVPR 84 (309)
T ss_pred cCCCC
Confidence 99754
No 500
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.36 E-value=0.1 Score=46.07 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=42.4
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhcc-CCCEEEEecCCC
Q 027976 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITS-EADIVIAAAGVA 134 (216)
Q Consensus 83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~-~ADIVIsatg~p 134 (216)
|+|-|+.|.+|+++...|.+.|.+|++..|+.+ .+.+... .+|.|||-.|.|
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence 578899999999999999999999999987642 2334444 599999999976
Done!