RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027976
(216 letters)
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 360 bits (924), Expect = e-126
Identities = 155/200 (77%), Positives = 175/200 (87%), Gaps = 3/200 (1%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ HLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTPKGC+ELLIR
Sbjct: 148 ILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIR 207
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
SGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +ADIVIAAAG+
Sbjct: 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGI 267
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
NLVRGSWLKPGAVV+DVGT PV+ D SCE+GYRL+GDVCYEEA+ +AS ITPVPGGV
Sbjct: 268 PNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVASAITPVPGGV 324
Query: 194 GPMTVAMLLSNTLDSAKRAY 213
GPMT+ MLL NTLD+AKR +
Sbjct: 325 GPMTITMLLCNTLDAAKRIF 344
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 308 bits (791), Expect = e-106
Identities = 144/202 (71%), Positives = 168/202 (83%), Gaps = 3/202 (1%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+DE IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R
Sbjct: 165 ILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR 224
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
VEI GK AVVIGRSNIVG+P +LLLQR ATVSIVH+ TKNPE+IT EADI+I+A G
Sbjct: 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQ 284
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
N+VRGSW+KPGAVV+DVG PV+ D S GYRL+GDVCYEEA ++AS +TPVPGGV
Sbjct: 285 PNMVRGSWIKPGAVVIDVGINPVE---DASSPRGYRLVGDVCYEEACKVASAVTPVPGGV 341
Query: 194 GPMTVAMLLSNTLDSAKRAYGF 215
GPMT+AMLLSNTL SAKR + F
Sbjct: 342 GPMTIAMLLSNTLTSAKRIHNF 363
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 284 bits (729), Expect = 3e-97
Identities = 129/201 (64%), Positives = 159/201 (79%), Gaps = 3/201 (1%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H++E KIL+ +SLEKDVDGFHPLNIG LAM+GREPLF+PCTPKGC+ELL R
Sbjct: 101 ILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR 160
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
SG+ I GK AVV+GRSNIVGLP SLLL + ATV++VH+ T +PE I EADIVIAAAG
Sbjct: 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQ 220
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
A +++G W+KPGA V+DVGT V DPS + GYRL+GDV + E ++A ITPVPGGV
Sbjct: 221 AMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGV 277
Query: 194 GPMTVAMLLSNTLDSAKRAYG 214
GPMTVAMLL NT+D AKR +
Sbjct: 278 GPMTVAMLLKNTVDGAKRVFA 298
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 242 bits (620), Expect = 2e-82
Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 8/175 (4%)
Query: 36 EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 95
EKDVDG HP+N+G LA+ P FIPCTP G +ELL R G+++ GK VV+GRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 96 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 155
+ LL +ATV++ H+ TKN ++ T +ADIVI A G LV+G +KPGAVV+DVG
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 156 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210
V D S G +L+GDV +E A AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 241 bits (618), Expect = 3e-82
Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 11/170 (6%)
Query: 43 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 102
HP+N+G L + EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 103 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 162
+ATV++ H+ TK+ +IT EADIV+ A G L++ W+KPGAVV+DVG V+
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 163 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212
+L+GDV +E AS ITPVPGGVGPMTVAMLL NT+++AKR
Sbjct: 114 ----NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 239 bits (613), Expect = 8e-80
Identities = 99/190 (52%), Positives = 127/190 (66%), Gaps = 11/190 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLDE K+L A+ EKDVDGFHP N+G LA EP F+PCTP G + LL G+++ GKN
Sbjct: 101 HLDEQKLLQAIDPEKDVDGFHPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKN 158
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
VV+GRSNIVG P +LLL +ATV++ H+ TK+ IT ADIV+ A G + ++ +
Sbjct: 159 VVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMV 218
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
KPGAVV+DVG V+ +L+GDV ++ AS ITPVPGGVGPMTVAMLL
Sbjct: 219 KPGAVVIDVGINRVN---------DGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLL 269
Query: 203 SNTLDSAKRA 212
NTL +A+R
Sbjct: 270 ENTLKAAERQ 279
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 220 bits (563), Expect = 3e-72
Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 18/205 (8%)
Query: 17 RIHQLM-------HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 69
RI+ ++ H+DE +++ +S EKDVDGFHP+N+G + + + F+PCTP G +E
Sbjct: 90 RINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILE 147
Query: 70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 129
LL ++I GK+ VV+GRSNIVG P LL +ATV+ H+ TKN ++T +ADI+I
Sbjct: 148 LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIV 207
Query: 130 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 189
A G L+ +K GAVV+DVG + E G L GDV ++ AS ITPV
Sbjct: 208 AVGKPKLITADMVKEGAVVIDVGVNRL--------ENGK-LCGDVDFDNVKEKASYITPV 258
Query: 190 PGGVGPMTVAMLLSNTLDSAKRAYG 214
PGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 259 PGGVGPMTITMLMHNTVELAKRAGG 283
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 217 bits (554), Expect = 9e-71
Identities = 96/195 (49%), Positives = 127/195 (65%), Gaps = 10/195 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLD ++ A+ EKDVDG H +N G LA E +PCTP GC+ LL R ++ G N
Sbjct: 103 HLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLN 160
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIGRSN+VG P + LL +ATV+I H+ T++ + ADI++AA G +V+G W+
Sbjct: 161 AVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWI 220
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGY---RLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199
KPGA V+DVG ++ P+ E G RL+GDV + EA +A ITPVPGGVGPMT+A
Sbjct: 221 KPGATVIDVG-----INRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIA 275
Query: 200 MLLSNTLDSAKRAYG 214
LL+NTL +A RA G
Sbjct: 276 CLLANTLTAACRAAG 290
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 209 bits (534), Expect = 7e-68
Identities = 90/187 (48%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D K+L+ + +KDVDGFHP N+G LA R PL PCTP+G + LL R G++ G N
Sbjct: 104 HIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLN 161
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+G SNIVG P SL L TV++ H TKN AD+++ A G + G W+
Sbjct: 162 AVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWI 221
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
KPGA+V+DVG ++ +L+GDV +E A AS ITPVPGGVGPMTVA LL
Sbjct: 222 KPGAIVIDVGINRLEDG---------KLVGDVEFETAAERASWITPVPGGVGPMTVATLL 272
Query: 203 SNTLDSA 209
NTL +
Sbjct: 273 ENTLQAC 279
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 204 bits (520), Expect = 1e-65
Identities = 96/192 (50%), Positives = 128/192 (66%), Gaps = 7/192 (3%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLDE +L A+ +KD DG HPLN+G L ++G EP CTP G + LL ++I GK
Sbjct: 103 HLDEVPLLHAIDPDKDADGLHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKK 160
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+GRS +VG P +L+L +ATV+I H+ T++ IT EADI++AAAG NL+ +
Sbjct: 161 AVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMV 220
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
KPGAVV+DVG + PS + RL GDV +EE +A+ ITPVPGGVGPMTV MLL
Sbjct: 221 KPGAVVVDVG-----IHRLPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLL 275
Query: 203 SNTLDSAKRAYG 214
NT+ S ++ +G
Sbjct: 276 VNTVLSWQKRHG 287
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 202 bits (515), Expect = 6e-65
Identities = 99/196 (50%), Positives = 126/196 (64%), Gaps = 7/196 (3%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
+DE + A+ KDVDGFHP N+G L M + F+ CTP G +ELL R +E GK+
Sbjct: 102 QIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKH 161
Query: 83 AVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
VV+GRSNIVG P +L+LQ+ TV+I H+ TK+ T +ADI+IAA G A +
Sbjct: 162 CVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFIT 221
Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
+KPGAVV+DVG ++ DPS + GYRL+GDV YE AS ITPVPGGVGPMT+
Sbjct: 222 ADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTI 278
Query: 199 AMLLSNTLDSAKRAYG 214
AMLL NTL S +R
Sbjct: 279 AMLLKNTLQSFERVNN 294
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 201 bits (513), Expect = 1e-64
Identities = 91/192 (47%), Positives = 125/192 (65%), Gaps = 11/192 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D K+++A++ EKDVDGFH N G L M G +PLF PCTP G +++L G+ + G +
Sbjct: 103 HIDSHKVIEAIAPEKDVDGFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAH 160
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIGRSNIVG P ++LL + ATV+I H+ T++ T +ADIV+AA G N++ +
Sbjct: 161 AVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMV 220
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
KPGA V+DVG D +L GDV + +A ITPVPGGVGPMT+ MLL
Sbjct: 221 KPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLL 271
Query: 203 SNTLDSAKRAYG 214
NT+++A+RA
Sbjct: 272 VNTIEAAERAAA 283
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 196 bits (499), Expect = 1e-62
Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 11/188 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D +L+A+ KDVDGFHPLNIG L + F+P TP G + LL +EI GK+
Sbjct: 102 HIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKD 159
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
V+IG SNIVG P ++L+ A+VS+ H LTK+ T ADIV G +L++ S +
Sbjct: 160 VVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMV 219
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAVV+D+G ++ RL+GDV +E AS ITPVPGGVGPMT+ LL
Sbjct: 220 KKGAVVVDIGINRLNDG---------RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLL 270
Query: 203 SNTLDSAK 210
NTL +A+
Sbjct: 271 ENTLIAAE 278
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 196 bits (499), Expect = 1e-62
Identities = 97/197 (49%), Positives = 128/197 (64%), Gaps = 7/197 (3%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H++E K+L+A+ +KDVDGFHP+N+G L + G E F+PCTP G E+L+RSGVE G
Sbjct: 104 HINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAE 163
Query: 83 AVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
VV+GRSNIVG P + ++ + +ATV+IVH +KN + ADI+I AAGV NLV+
Sbjct: 164 VVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVK 223
Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
W+KPGA V+DVG V + L GDV ++ +A ITPVPGGVGPMT+
Sbjct: 224 PEWIKPGATVIDVGVNRVGTNESTGKAI---LSGDVDFDAVKEIAGKITPVPGGVGPMTI 280
Query: 199 AMLLSNTLDSAKRAYGF 215
AML+ NTL SAK
Sbjct: 281 AMLMRNTLKSAKFHLSL 297
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 193 bits (492), Expect = 1e-61
Identities = 92/189 (48%), Positives = 128/189 (67%), Gaps = 11/189 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H++E KIL A+ +KDVDGFHP+N G+L GR P+ IPCTP G +E+ VE+ GK+
Sbjct: 103 HINEEKILLAIDPKKDVDGFHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKH 160
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIGRSNIVG P + LL +ATV++ H+ T+N ++ +ADI++ A G + V ++
Sbjct: 161 AVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFV 220
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAVV+DVG ++ D E G +L+GDV ++E +AS ITPVPGGVGPMT+ ML+
Sbjct: 221 KEGAVVIDVG-----MNRD---ENG-KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLM 271
Query: 203 SNTLDSAKR 211
T +A R
Sbjct: 272 EQTYQAALR 280
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 190 bits (484), Expect = 3e-60
Identities = 95/196 (48%), Positives = 122/196 (62%), Gaps = 10/196 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D+ ++L + KDVDGFHP N+G L + F PCTP G +LL +GV+ G +
Sbjct: 102 HVDDREVLRRIDPAKDVDGFHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGAD 159
Query: 83 AVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
VV+GRS+IVG P +LL+Q+ ATV++ H+ T + T ADIV+AAAGV L+
Sbjct: 160 VVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELID 219
Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
GS L GA V+DVG VD E GY L+GDV +E A AS ITPVPGGVGPMT
Sbjct: 220 GSMLSEGATVIDVGIN----RVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTR 275
Query: 199 AMLLSNTLDSAKRAYG 214
AMLL NT+ +A G
Sbjct: 276 AMLLYNTVKAASLQEG 291
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 189 bits (480), Expect = 6e-60
Identities = 96/200 (48%), Positives = 138/200 (69%), Gaps = 11/200 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+ E K++D +S +KDVDGFHP+N+GNL + G++ F+PCTP G IEL+
Sbjct: 93 ILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKS 150
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+G +I GK AVVIGRSNIVG P + LL +ATV+I H+ TK+ Q+ EADI++ A G+
Sbjct: 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGL 210
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
A V+ ++KPGA+V+DVG + +L GDV +++ + A ITPVPGGV
Sbjct: 211 AKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAKRAY 213
GPMT+ MLL+NTL +AKR +
Sbjct: 262 GPMTITMLLANTLKAAKRIW 281
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 189 bits (481), Expect = 8e-60
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 9/195 (4%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+ E K+++A+ KDVDGFHP+N+G +++ P F+ TP G +ELL R +E GK
Sbjct: 102 HISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKK 159
Query: 83 AVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
VV+GRSNIVG P L++Q+ + TV++ H+ +KN ++ EADI+IAA G V+
Sbjct: 160 CVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVK 219
Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
+K GAVV+DVGT V D + + G++L GDV ++E S ITPVPGGVGPMT+
Sbjct: 220 ADMVKEGAVVIDVGTTRVP---DATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTI 276
Query: 199 AMLLSNTLDSAKRAY 213
L+ NTL + K+A
Sbjct: 277 VSLMKNTLLAGKKAI 291
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 184 bits (469), Expect = 6e-58
Identities = 91/189 (48%), Positives = 131/189 (69%), Gaps = 10/189 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+DE ++L A++ KDVDGFH N+G L+ +GR+ L PCTP GC+ LL + ++ GK+
Sbjct: 104 HIDEARVLQAINPLKDVDGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKH 161
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIGRSNIVG P + LL + H +V++VH+ + + + + +ADIV+AA G L+ WL
Sbjct: 162 AVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWL 221
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAML 201
KPGAVV+DVG +D + G RL+GDV ++ A+ + S ITPVPGGVGPMT+A L
Sbjct: 222 KPGAVVIDVGINRID-------DDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFL 274
Query: 202 LSNTLDSAK 210
+ NT+ +A+
Sbjct: 275 MKNTVTAAR 283
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 183 bits (466), Expect = 1e-57
Identities = 84/187 (44%), Positives = 120/187 (64%), Gaps = 6/187 (3%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D+ I++ + EKDVDGFH N+G L ++ IPCTPKGC+ L+ + G +
Sbjct: 103 HIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSD 162
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIGRSNIVG P + LL + TV+ VH+ T++ S+ADI++AA G+ N V+ SW+
Sbjct: 163 AVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWI 222
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GA+V+DVG ++ + +GDV + E + AS ITPVPGGVGPMT+A L+
Sbjct: 223 KKGAIVIDVGINSIEE------GGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLM 276
Query: 203 SNTLDSA 209
NT+ +A
Sbjct: 277 VNTVIAA 283
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 182 bits (463), Expect = 3e-57
Identities = 89/197 (45%), Positives = 117/197 (59%), Gaps = 20/197 (10%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLDE +L+ + KD DG HP N+G L + PL PCTP+G + LL R VE+ G +
Sbjct: 103 HLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAH 160
Query: 83 AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS 140
VVIGR VG P LLL R ATV++ H T++ T ADI++AAAGVA+LV
Sbjct: 161 VVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTAD 220
Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV---CYEEAMRLASVITPVPGGVGPMT 197
+KPGA VLDVG V + D +L+GDV +E +A ++P PGGVGPMT
Sbjct: 221 MVKPGAAVLDVG---VSRAGD------GKLVGDVHPDVWE----VAGAVSPNPGGVGPMT 267
Query: 198 VAMLLSNTLDSAKRAYG 214
A LL+N ++ A+R G
Sbjct: 268 RAFLLTNVVERAERRAG 284
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 180 bits (458), Expect = 2e-56
Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 11/203 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ + E KIL+A++ EKDVDGFHP+NIG L + E F+PCTP G +E+L
Sbjct: 94 ILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKH 151
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+ +++ GKNAVVIGRS+IVG P S LL + +A+V+I+H+ +K+ +AD++++A G
Sbjct: 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGK 211
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
LV +K GAV++DVG P E G +L GDV Y+ +A ITPVPGGV
Sbjct: 212 PGLVTKDVVKEGAVIIDVGNTPD--------ENG-KLKGDVDYDAVKEIAGAITPVPGGV 262
Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
GP+T+ M+L+NTL + K G
Sbjct: 263 GPLTITMVLNNTLLAEKMRRGID 285
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 175 bits (445), Expect = 2e-54
Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLD + ++A+ KD DGFHP N+G L M G E +PCTP G I L GV+I GKN
Sbjct: 109 HLDPQEAMEAIDPAKDADGFHPYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKN 166
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AV++G SN+VG P + +L +ATVS+ H T + ++ T +ADI++ A GV +L++ +
Sbjct: 167 AVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMV 226
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAV+ DVG + V GDV +E ++ AS+ITPVPGGVGP+T+AML+
Sbjct: 227 KEGAVIFDVGITKEEDKV----------YGDVDFENVIKKASLITPVPGGVGPLTIAMLM 276
Query: 203 SNTLDSAKRAY 213
+ L A+++
Sbjct: 277 KHVLMCAEKSL 287
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 175 bits (444), Expect = 2e-54
Identities = 90/192 (46%), Positives = 121/192 (63%), Gaps = 8/192 (4%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+D ++L+A+ KDVDGFHPLN+G L M G E L PCTP G + LL G+ + GK
Sbjct: 100 HIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKE 157
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
VV+GRSNIVG P + LL R ATV++ H+ T++ +T AD+++ A G +L+ +
Sbjct: 158 VVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMV 217
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
+PGAVV+DVG V L GDV E A +A +TPVPGGVGPMTVAML+
Sbjct: 218 RPGAVVVDVGINRV-----GGNGGRDILTGDVHPEVA-EVAGALTPVPGGVGPMTVAMLM 271
Query: 203 SNTLDSAKRAYG 214
+NT+ +A R G
Sbjct: 272 ANTVIAALRRRG 283
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 174 bits (442), Expect = 4e-54
Identities = 87/191 (45%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
LD + L+ + KDVDGFHP N+G LA+ P F PCTP G + LL R G+ GK A
Sbjct: 103 LDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKA 160
Query: 84 VVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
VV+GRSNIVG P +L+L +ATV++ H+ T + + EAD + A G V
Sbjct: 161 VVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTA 220
Query: 140 SWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199
+KPGAVV+DVG D L+GD +E +AS ITPVPGGVGPMT+A
Sbjct: 221 DMVKPGAVVVDVGINRTDDG----------LVGDCDFEGLSDVASAITPVPGGVGPMTIA 270
Query: 200 MLLSNTLDSAK 210
LL NT+ S K
Sbjct: 271 QLLVNTVQSWK 281
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 173 bits (439), Expect = 9e-54
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ HLDE KI + + KD+D +++G E F+PCTP I L+
Sbjct: 94 IMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKS 151
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
++I GK VVIGRSNIVG P + LL +ATV+I H+ TKN +++ +ADI++ A G
Sbjct: 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGR 211
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
+ ++K GA+V+DVGT V+ ++ GDV +++ + AS ITPVPGGV
Sbjct: 212 PKFIDEEYVKEGAIVIDVGTSSVN----------GKITGDVNFDKVIDKASYITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAK 210
G +T +L+ N ++ K
Sbjct: 262 GSLTTTLLIKNVCEALK 278
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 173 bits (439), Expect = 1e-53
Identities = 91/197 (46%), Positives = 125/197 (63%), Gaps = 11/197 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+D KIL+A+ +KDVDGFHP N+G L + G + F+PCTP G +ELL
Sbjct: 93 ILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRL-VTGLDG-FVPCTPLGVMELLEE 150
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+++ GK+ V+G SNIVG P + LL +ATV I H TK+ + T +ADIVI G
Sbjct: 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGK 210
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
NL+ +K GA+V+D+G + RL+GDV +E + S ITPVPGGV
Sbjct: 211 PNLITEDMVKEGAIVIDIGINRTEDG---------RLVGDVDFENVAKKCSYITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAK 210
GPMT+AMLLSNTL +AK
Sbjct: 262 GPMTIAMLLSNTLKAAK 278
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 173 bits (439), Expect = 1e-53
Identities = 88/197 (44%), Positives = 129/197 (65%), Gaps = 10/197 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+ + IL+++ KDVDGFHP+N+G L + G E F+PCTP G ++LL
Sbjct: 92 ILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVMKLLKA 150
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+++ GK+AV+IG SNIVG P + +L ATVS+ H TK+ T +AD++I AAG
Sbjct: 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGC 210
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
NL+R +K G +V+DVG ++ +++GDV +EE + +S ITPVPGGV
Sbjct: 211 VNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAK 210
GPMT+AMLL NT+ SAK
Sbjct: 262 GPMTIAMLLENTVKSAK 278
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 171 bits (434), Expect = 6e-53
Identities = 93/198 (46%), Positives = 128/198 (64%), Gaps = 10/198 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+DE +LDA+S KD DGFHP N+G L++ G + PCTP G + +L
Sbjct: 92 ILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAGVMRMLDE 150
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+ V+ GK A+V+GRSNIVG P +++L HATV+I H+ T + ADI++AA G
Sbjct: 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGK 210
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
A LV+G+W+K GAVV+DVG + +L+GDV + A AS ITPVPGGV
Sbjct: 211 AELVKGAWVKEGAVVIDVGMNRLADG---------KLVGDVEFAAAAARASAITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAKR 211
GPMT AMLL NT++ AKR
Sbjct: 262 GPMTRAMLLVNTVELAKR 279
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 170 bits (431), Expect = 2e-52
Identities = 90/202 (44%), Positives = 128/202 (63%), Gaps = 9/202 (4%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ HLD IL A+S +KDVDG HP+N+G L + G FIPCTP G IELL
Sbjct: 88 ILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLL-GETDGFIPCTPAGIIELLKY 146
Query: 74 SGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVIA 129
+ + G++ ++GRSNIVG P +LL+Q+H +ATV+++H+ ++N +I ADI+IA
Sbjct: 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIA 206
Query: 130 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 189
A GV ++ + AV++DVGT V + GY L+GDV + + ITPV
Sbjct: 207 AIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPK----GYILVGDVDFNNVVPKCRAITPV 262
Query: 190 PGGVGPMTVAMLLSNTLDSAKR 211
PGGVGPMTVAML+ NT +S R
Sbjct: 263 PGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 169 bits (430), Expect = 2e-52
Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 12/187 (6%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
+D +++ A+ EKDVDGFHPLN+G L + G P F PCTP G + LL + I GK A
Sbjct: 98 VDTERVIAAILPEKDVDGFHPLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRA 155
Query: 84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
VV+GRS VG P + LL ATV+I H+ T+N + +ADI+++AAG A + +K
Sbjct: 156 VVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVK 215
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
PGA V+DVG V+ +L GDV ++ +A ITPVPGGVGPMT+A L+
Sbjct: 216 PGATVIDVGINQVN----------GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLME 265
Query: 204 NTLDSAK 210
NT D+AK
Sbjct: 266 NTFDAAK 272
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 165 bits (420), Expect = 9e-51
Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 10/200 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
II+++ +D+ KIL AVS KD+DGFHPLN+G L G FIPCT GC+ ++ +
Sbjct: 94 IIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL-HSGISQGFIPCTALGCLAVIKK 152
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+ GKN V+IGRSNIVG P S LL + + +V+I H+ T N ITS+ADIV+AA G
Sbjct: 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGS 212
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
+ + P ++V+DVG + G +++GDV +E ITPVPGG+
Sbjct: 213 PLKLTAEYFNPESIVIDVGINRIS---------GNKIIGDVDFENVKSKVKYITPVPGGI 263
Query: 194 GPMTVAMLLSNTLDSAKRAY 213
GPMT+A LL NT+ + K +
Sbjct: 264 GPMTIAFLLKNTVKAFKDSL 283
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 158 bits (402), Expect = 4e-48
Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
LDE ++DA+ +KDVDGF P+++G L EP + TP G + LL +++ GK
Sbjct: 102 LDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRV 159
Query: 84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
V++GRSNIVG P + L+ H ATV+I H+ T+N +Q+T EADI++ A GV + + +K
Sbjct: 160 VIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVK 219
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
PGAVV+DVG + D L+GDV +AS ITPVPGGVGPMT+A L++
Sbjct: 220 PGAVVIDVG---ISRGADGK------LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMA 270
Query: 204 NTLDSAKR 211
T+ AKR
Sbjct: 271 QTVTLAKR 278
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 156 bits (395), Expect = 4e-47
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 12/192 (6%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
+DE DA+SL KDVDG L G +AM E + TP G + LL +E+ GK+
Sbjct: 104 QIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKH 161
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+GRS I+G P +++L +ATV+I H+ T+N ++ +ADI++ A G L++ W+
Sbjct: 162 AVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWI 221
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAVV+D G P D +GD+ + +AS TPVPGGVGPMT+ L+
Sbjct: 222 KQGAVVVDAGFHPRDGGG----------VGDIELQGIEEIASAYTPVPGGVGPMTINTLI 271
Query: 203 SNTLDSAKRAYG 214
T+++A++A G
Sbjct: 272 RQTVEAAEKALG 283
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 147 bits (373), Expect = 7e-44
Identities = 81/190 (42%), Positives = 115/190 (60%), Gaps = 15/190 (7%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
+DE D ++LEKDVDG L+ G L+M G E ++PCTP G + LL G+++ GKNA
Sbjct: 105 IDERAAFDRIALEKDVDGVTTLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNA 162
Query: 84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
VV+GRS I+G P ++LL +ATV++ H+ T+N I +ADI++ A G ++ W+
Sbjct: 163 VVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWIS 222
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
GAV+LD G P +V GD+ +A +S TPVPGGVGPMT+A+LL
Sbjct: 223 EGAVLLDAGYNPGNV-------------GDIEISKAKDKSSFYTPVPGGVGPMTIAVLLL 269
Query: 204 NTLDSAKRAY 213
TL S K +
Sbjct: 270 QTLYSFKEHF 279
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 146 bits (369), Expect = 3e-43
Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
I++++ H+++ ++ ++ EKDVDGFHP N+G L +R ++ L CTPKG + +L
Sbjct: 93 ILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLRE 151
Query: 74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
G++ G AVV+G SN+VG P S LL ATV+ H T + + T++ADI+I A G
Sbjct: 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK 211
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
N + +K GAVV+DVG VD +++GDV + + ITPVPGGV
Sbjct: 212 PNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGV 261
Query: 194 GPMTVAMLLSNTLDSAK 210
GPMT+ LL NT A+
Sbjct: 262 GPMTITELLYNTFQCAQ 278
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 103 bits (258), Expect = 3e-28
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 60 IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112
PCTP ELL + GV + GK +V+GRS IVG P LLQR ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 113 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 172
T + +AD+V+ + V W+KPGA V++ S
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC-----------SPTK------ 103
Query: 173 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210
+ ++ AS+ P+ GGVG +TVAM + N + S +
Sbjct: 104 -LSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 65.5 bits (160), Expect = 2e-13
Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 59/210 (28%)
Query: 35 LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 78
KDV+G I NL R E +PCTP +++L + G +
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60
Query: 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 117
GK +I RS +VG P + LL A V S+ V
Sbjct: 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120
Query: 118 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 176
S++D+VI N V LK GA+ ++ +
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFE------------------ 162
Query: 177 EEAMRLASVITPVPGGVGPMTVAMLLSNTL 206
AS+ P +G +T+AMLL N L
Sbjct: 163 PSVKEKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 32.9 bits (76), Expect = 0.033
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 23 HLDEGKILDAVSLEKDVD 40
H+DE KIL+A+ EKDVD
Sbjct: 100 HIDENKILNAIDPEKDVD 117
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 33.8 bits (78), Expect = 0.050
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 116 NPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT 153
+ E+ ADIV+ A +++ WLKPG + +G
Sbjct: 188 SAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGA 226
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 32.0 bits (73), Expect = 0.21
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 106 TVSIVHALTKNPEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDV 158
V +V ++ E++ +DIV V+ W+KPGA +L C +D
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 159 SV---DPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 192
+ D + + +EE + A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 31.8 bits (73), Expect = 0.22
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 118 EQITSEADIVIAAAGVAN-LVRGSWLKPGA 146
E +ADI+ A LVRG WLKPG
Sbjct: 184 EAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 31.2 bits (71), Expect = 0.31
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 115 KNPEQITSEADIVIAA--AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSCEYGYRLM 171
+ E+ ADIV+ +++ W+KPG + VG CP +DP L
Sbjct: 185 TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGADCPGKTELDPDI----LLR 240
Query: 172 GDVCYE 177
D+ +
Sbjct: 241 ADIFVD 246
>gnl|CDD|224949 COG2038, CobT, NaMN:DMB phosphoribosyltransferase [Coenzyme
metabolism].
Length = 347
Score = 31.1 bits (71), Expect = 0.38
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 117 PEQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCPV-DVSVDPS-----CEYGY 168
PE +T+ A I AA G A V G+ KP + + P D++ P+ E
Sbjct: 80 PEGVTTPAVINRAAGGAAINVLAAGAGAKPKVPDIGLDGRPTGDIAEGPAMSEEEAEAAI 139
Query: 169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 206
++ E A ++ G G T A + L
Sbjct: 140 EAGKELGKELAKNGDDLLIIGESGPGNTTTAAAVLAAL 177
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 30.5 bits (70), Expect = 0.47
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 36/113 (31%)
Query: 70 LLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------------- 110
L R GV++ GK +++G R+ I+ LL A ++IV
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILP-----LLDLGVAEITIVNRTVERAEELAKLF 167
Query: 111 -----HALTKNPEQITSEADIVIAA--AGVANLVRG-----SWLKPGAVVLDV 151
L ++ ++ D++I A AG++ + S L+PG +V D+
Sbjct: 168 GALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM 220
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 29.7 bits (68), Expect = 1.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 26/67 (38%)
Query: 110 VHALTKNP---EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTC 154
V L NP E+ EAD+VI A L+ G +KPG+V+
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAV----LIPGAKAPKLVTEEMVKTMKPGSVI------ 264
Query: 155 PVDVSVD 161
VDV++D
Sbjct: 265 -VDVAID 270
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 29.6 bits (67), Expect = 1.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 109 IVHALTKNPEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVGTCPVDV 158
+ +T + + AD+VI A+ VA + LKPGA+V DVG+ V
Sbjct: 52 LGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI-APHLKPGAIVTDVGSVKASV 106
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 28.8 bits (65), Expect = 1.8
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 107 VSIV--HALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVG 152
V+IV A+T+ +IT E IAA+GV +L+ WL A VLD+G
Sbjct: 232 VAIVAGRAITEASGRITPETAPAIAASGV-DLISVGWLTHSAPVLDIG 278
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 28.2 bits (64), Expect = 2.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 19/55 (34%)
Query: 118 EQITSEADIVIAAAGV----------ANLVRGSWLKPGAVVLDVGTCPVDVSVDP 162
E+ EAD+VI A + +V+ +KPG+V+ VDV+ D
Sbjct: 78 EEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVI-------VDVAADQ 123
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 28.9 bits (65), Expect = 2.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 84 VVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAA 130
VV G NI LPT L RH A V I +L + P + + + AA
Sbjct: 111 VVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPSTLPARRESAYAA 159
>gnl|CDD|204176 pfam09242, FCSD-flav_bind, Flavocytochrome c sulphide
dehydrogenase, flavin-binding. Members of this family
adopt a structure consisting of a beta(3,4)-alpha(3)
core, and an alpha+beta sandwich. They are required for
binding to flavin, and subsequent electron transfer.
Length = 70
Score = 26.8 bits (60), Expect = 2.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 174 VCY-----EEAMRLASV-------ITPVPGGVGPMTV 198
CY + A+ +A V I VPGGV P+
Sbjct: 9 TCYSLVAPDYAISVAGVYRLDDGKIVEVPGGVSPLDA 45
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 28.5 bits (64), Expect = 2.9
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 1 MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKD 38
+++K+ F ++I ++ L K + D
Sbjct: 347 AILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNVISLD 384
>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 426
Score = 28.3 bits (64), Expect = 3.2
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 66 GCIELL---IRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL-- 113
GC E L I+ ++M GK AVV G + VG + L+ A V + + AL
Sbjct: 188 GCRESLVDGIKRATDVMIAGKVAVVCGYGD-VGKGCAQSLRGQGARVIVTEIDPICALQA 246
Query: 114 ------TKNPEQITSEADIVIAAAGVANLVRGSWL---KPGAVVLDVG 152
E++ +ADI + G +++ + K GA+V ++G
Sbjct: 247 AMDGFEVVTMEEVAPQADIFVTTTGNKDVITREHMRAMKDGAIVCNIG 294
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 28.5 bits (64), Expect = 3.3
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 110 VHALTKNPEQITSEADIVIAAAGVANLVRGS----WLKPGAVVLDVGTCPV--DVSVDP 162
VH L K E+I + ADI + G N V GS L G V P+ D++VDP
Sbjct: 440 VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLATGKV------DPLHPDLAVDP 492
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase.
Length = 489
Score = 28.3 bits (63), Expect = 3.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 60 IPCTPKGCIEL-----LIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 113
I C P G ++ L RS V+ I+G N S +VG T+ + HH SIV ++
Sbjct: 365 IQC-PNGALQASDLLQLARSQVDYILGSNPK--NMSYMVGYGTNYPKKPHHRGASIV-SI 420
Query: 114 TKNPEQIT 121
K+ +T
Sbjct: 421 KKDKTPVT 428
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 27.6 bits (62), Expect = 4.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 116 NPEQITSEADIVI----AAAGVANLVRG-----SWLKPGAVVLDVGTCPVDVSV 160
+P + +EAD+VI A V ++ G LKPGA+V+D+ T + +
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAR 103
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 27.8 bits (62), Expect = 4.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 176 YEEAMRLASVITPVPGGVGPMTVAMLLSN 204
Y EA P+ GP+ A L+ N
Sbjct: 169 YMEACNAFLKGVPIGDSAGPLVAARLIGN 197
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 27.7 bits (62), Expect = 5.2
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 110 VHALTKNPEQI---TSEADIVIAA-----AGVANLVRGSW---LKPGAVVLDVGTCPVDV 158
VH L P I +AD+VI A A LV +KPG+V+ VDV
Sbjct: 215 VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVI-------VDV 267
Query: 159 SVDP-SCEYGYRL--MGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSN 204
++D C D YE + + +PG V P T L+N
Sbjct: 268 AIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAV-PRTSTQALTN 315
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 27.6 bits (62), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 178 EAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 209
EA L S+I P G G T+A L++ T ++A
Sbjct: 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAA 75
>gnl|CDD|131900 TIGR02853, spore_dpaA, dipicolinic acid synthetase, A subunit.
This predicted Rossman fold-containing protein is the A
subunit of dipicolinic acid synthetase as found in most,
though not all, endospore-forming low-GC Gram-positive
bacteria; it is absent in Clostridium. The B subunit is
represented by TIGR02852. This protein is also known as
SpoVFA [Cellular processes, Sporulation and
germination].
Length = 287
Score = 27.0 bits (60), Expect = 6.8
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 114 TKNPEQITSEADIVI----AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR 169
E+ +E DIVI A A+++ S L AV++D+ + P
Sbjct: 200 LNKLEEKVAEIDIVINTIPALVLTADVL--SKLPKHAVIIDLASKPGGT----------- 246
Query: 170 LMGDVCYEEAMRLASVITP-VPGGVGPMTVAMLLSNTL 206
D Y + + +++ P +PG V P T +L+N L
Sbjct: 247 ---DFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVL 281
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 27.0 bits (60), Expect = 7.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 132
R V++ GK ++ G S+ +G + R ATV V + + + + AD + A G
Sbjct: 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV---ARREDLLDAVADRITRAGG 89
Query: 133 VA 134
A
Sbjct: 90 DA 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,136,563
Number of extensions: 1067596
Number of successful extensions: 1300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 86
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)