RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027976
(216 letters)
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 322 bits (827), Expect = e-112
Identities = 105/194 (54%), Positives = 134/194 (69%), Gaps = 5/194 (2%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HL+E + ++ + KD D P+N+G L +GREP F PCT KG I LL R G+E+ GK
Sbjct: 108 HLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKR 167
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--TKNPEQITSEADIVIAAAGVANLVRGS 140
AVV+GRSNIVG P + LL + +ATV+IVH+ T++ ADIVIAA G V+G
Sbjct: 168 AVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGE 227
Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM 200
W+K GA V+DVGT PV DPS + GYRL+GDVC+EEA A+ I+PVPGGVGPMT+AM
Sbjct: 228 WIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAM 284
Query: 201 LLSNTLDSAKRAYG 214
LL NTL++ K A G
Sbjct: 285 LLENTLEAFKAALG 298
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 317 bits (816), Expect = e-110
Identities = 89/191 (46%), Positives = 128/191 (67%), Gaps = 3/191 (1%)
Query: 24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
++ ++++A++ EKDVDG +N G LA FIPCTPKGC+EL+ +GV I G++A
Sbjct: 109 INTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHA 168
Query: 84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
VV+GRS IVG P LL ++ATV+ H+ T + ++ ++ DI++ A G +V+G W+K
Sbjct: 169 VVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIK 228
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
PGA+V+D G V D G +++GDV Y+EA AS ITPVPGGVGPMTVAML+
Sbjct: 229 PGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ 285
Query: 204 NTLDSAKRAYG 214
+T++SAKR
Sbjct: 286 STVESAKRFLE 296
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 287 bits (738), Expect = 7e-99
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
+D K+L+ + +KDVDGFHP N+G L R P PCTP+G + LL R ++ G N
Sbjct: 104 GIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLN 161
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVVIG SNIVG P S+ L T ++ H TKN AD++I A G + G W+
Sbjct: 162 AVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWI 221
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GA+V+DVG ++ + +++GDV +E+A + AS ITPVPGGVGPMTVA L+
Sbjct: 222 KEGAIVIDVGINRLE---NG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLI 272
Query: 203 SNTLDSAKRAYGF 215
NTL + +
Sbjct: 273 ENTLQACVEYHDP 285
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 287 bits (737), Expect = 8e-99
Identities = 77/190 (40%), Positives = 109/190 (57%), Gaps = 11/190 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+++ ++ ++ EKDVDGFHP N+G L +R + CTPKG + +L G++ G
Sbjct: 105 HINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAY 163
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+G SN+VG P S LL ATV+ H T + + T++ADI+I A G N + +
Sbjct: 164 AVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMV 223
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GAVV+DVG VD +++GDV + + ITPVPGGVGPMT+ LL
Sbjct: 224 KEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELL 273
Query: 203 SNTLDSAKRA 212
NT A+
Sbjct: 274 YNTFQCAQEL 283
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 287 bits (737), Expect = 9e-99
Identities = 93/191 (48%), Positives = 119/191 (62%), Gaps = 11/191 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLD +L+ + +KDVDGFHP NIG LA R PL PCTPKG + LL +G ++ G +
Sbjct: 106 HLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMD 163
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AVV+G SNIVG P +L L TV++ H T++ S AD+V+ AAG LV+G W+
Sbjct: 164 AVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWI 223
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K GA+V+DVG RL+GDV YE A + AS ITPVPGGVGPMT A LL
Sbjct: 224 KEGAIVIDVGINRQA---------DGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLL 274
Query: 203 SNTLDSAKRAY 213
NTL +A+ +
Sbjct: 275 ENTLHAAEHLH 285
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 287 bits (737), Expect = 9e-99
Identities = 87/189 (46%), Positives = 124/189 (65%), Gaps = 10/189 (5%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
H+ + IL+++ KDVDGFHP+N+G L + G E F+PCTP G ++LL +++ GK+
Sbjct: 104 HICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKD 162
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
AV+IG SNIVG P + +L ATVS+ H TK+ T +AD++I AAG NL+R +
Sbjct: 163 AVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMV 222
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
K G +V+DVG ++ +++GDV +EE + +S ITPVPGGVGPMT+AMLL
Sbjct: 223 KEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLL 273
Query: 203 SNTLDSAKR 211
NT+ SAK
Sbjct: 274 ENTVKSAKN 282
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 275 bits (706), Expect = 4e-94
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
D +I+ + KDVD P N G +A+ +P TP+ I+++ G
Sbjct: 97 GFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYGYH--ENT 152
Query: 83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
++ RS +VG P S++L + TVS+ H+ TK+ +T + IV+ A G + +
Sbjct: 153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMV 212
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
PG+VV+DVG V+ +++GD +E+ ITPVPGGVGP+T +L
Sbjct: 213 TPGSVVIDVGINYVND----------KVVGDANFEDLSEYVEAITPVPGGVGPITATNIL 262
Query: 203 SNTLDSAKR 211
N + +A+
Sbjct: 263 ENVVKAAEF 271
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 266 bits (682), Expect = 1e-90
Identities = 82/191 (42%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
HLDE L+ V KD DG HP N+G L + P +PCTP+G + LL R + I G +
Sbjct: 103 HLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAH 160
Query: 83 AVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS 140
VVIGR VG P LLL R +ATV++ H T++ +T +ADIV+AA GVA+L+
Sbjct: 161 VVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTAD 220
Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM 200
++PGA V+DVG D L+GDV + + LA ++P PGGVGP+T A
Sbjct: 221 MVRPGAAVIDVGVSRTDD----------GLVGDV-HPDVWELAGHVSPNPGGVGPLTRAF 269
Query: 201 LLSNTLDSAKR 211
LL+N ++ A+R
Sbjct: 270 LLTNVVELAER 280
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 219 bits (560), Expect = 1e-71
Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 63/231 (27%)
Query: 23 HLDEGKILDAVSLEKDVDGFHPLNIGNL-------AMRGREPLFIPCTPKGCIELL---- 71
+ + + V EKDV+G + + NL R +PCTP +++L
Sbjct: 104 NAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLK 163
Query: 72 -----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------- 116
+ G + GK +VI RS IVG P + LL ATV V
Sbjct: 164 IYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKL 223
Query: 117 ---------------PEQITSEADIVIAAAGVAN-LVRGSWLKPGAVVLDVGTCPVDVSV 160
++ + ++D+VI N ++K GAV ++
Sbjct: 224 NKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF--- 280
Query: 161 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 211
++ AS+ P+ G V T+AMLL N L +
Sbjct: 281 ---------------SDDVKEKASLYVPMTGKV---TIAMLLRNMLRLVRN 313
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 54.6 bits (131), Expect = 3e-09
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 63 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 121
T +G I + I+ + I G N V+G + G+ + A V + + +I
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195
Query: 122 S----------------EADIVIAA--AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 163
+ D+ I A V + + V+D+ + P +
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYA 255
Query: 164 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 206
+ G + + + +PG V P T +L++ L
Sbjct: 256 EKRGIKALL-------------VPGLPGIVAPKTAGRILADVL 285
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 39.0 bits (91), Expect = 5e-04
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 41/167 (24%)
Query: 63 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------- 110
T +G I L I + I G V+G G+ + A V +
Sbjct: 139 TVEGTIMLAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARIT 197
Query: 111 -----HALTKNPEQITSEADIVIAAAGVANLVRG--SWLKPGAVVLDVGTCPVDVSVDPS 163
T ++ + DI I L + S + P ++ +D++ P
Sbjct: 198 EMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLI-------LDLASRPG 250
Query: 164 CEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMTVAMLLSNTL 206
+ + +PG V P T +L+N L
Sbjct: 251 G----------TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 35.0 bits (81), Expect = 0.011
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 114 TKNPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 164
+ ++ + AD++I ++ G W+KPGA + VG P +D
Sbjct: 187 CSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL 239
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 35.0 bits (81), Expect = 0.012
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 79 MGKNAVVIGRSNIVGLPTSLL---LQRHHATVSIV-HALTKNPEQITSEADIVIAAAGVA 134
+ K +V G G L L+ +SI+ E I + AD+VI + +
Sbjct: 21 IHKIVIVGG----YGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPIN 76
Query: 135 NLVR-----GSWLKPGAVVLDVG 152
+ +L ++ D+
Sbjct: 77 LTLETIERLKPYLTENMLLADLT 99
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 33.4 bits (77), Expect = 0.037
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 114 TKNPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 164
+ P + S D+++ +V+ W++ G + +G P +D
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELDVEI 230
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.5 bits (75), Expect = 0.067
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 109 IVHALTKNPEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVG 152
IV T + + + AD++I ++ LK ++ D G
Sbjct: 52 IVDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAG 101
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 32.7 bits (75), Expect = 0.077
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 114 TKNPEQITSEADIVIAA---AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 164
+ + DI+ A ++ L+PG + VG CP +
Sbjct: 185 ASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADV 239
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 32.2 bits (74), Expect = 0.083
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 116 NPEQITSEADIVIAA-AGVANLVRGSWLKPGAVVLDVGT-CPVDVSVDPSC 164
P I ++ADIV+ A L G L+ GA V +G+ P +D
Sbjct: 176 APADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEA 226
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.3 bits (72), Expect = 0.19
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 32/112 (28%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------HAL 113
G ++ L E+ K+ +V+G R+ I L + A V + L
Sbjct: 115 GFLKSLKSLIPEVKEKSILVLGAGGASRAVIYA------LVKEGAKVFLWNRTKEKAIKL 168
Query: 114 TKN--------PEQITSEADIVIAAAGV------ANLVRGSWLKPGAVVLDV 151
+ PE++ + +++ V + +K VV+D+
Sbjct: 169 AQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDI 220
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 29.8 bits (68), Expect = 0.56
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 109 IVHALTKNPEQITSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 152
+V ++ + A I+ + ++ L P A+V DV
Sbjct: 44 LVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA 91
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 28.7 bits (65), Expect = 1.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 109 IVHALTKNPEQI-TSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 152
I+ T + ++ D V+ ++ V L A V D G
Sbjct: 47 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG 96
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 109 IVHALTKNPEQI-TSEADIVIAAAGVANLVR-----GSWLKPGAVVLDVG 152
I+ T + ++ D V+ ++ V L A V D G
Sbjct: 79 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG 128
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.3 bits (63), Expect = 1.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA 134
G + GK AVV+ + VG+ ++ LL A V + + ++ + AD V V
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG---RKLDKAQAAADSVNKRFKVN 170
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 28.3 bits (64), Expect = 1.6
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGL----PTSLL-----------LQRHHA 105
G ++ L+ V + G ++IG R + L P S+ L A
Sbjct: 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA 171
Query: 106 TVSIVHALTKNPEQITSEADIVIAA--AGVAN---LVRGSWLKPGAVVLDV 151
V A EQ+ D++I + A + + +V D+
Sbjct: 172 AYGEVKAQ--AFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDM 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.8
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 31/89 (34%)
Query: 1 MVVQKM--KFLM---PCQIIIRIHQLMHLDE-----------GKILDAVSLEK--DVDGF 42
+VV K+ L+ P + I I + +L+ I+D ++ K D D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 43 HPLN--------IG----NLAMRGREPLF 59
P IG N+ R LF
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 28.2 bits (63), Expect = 2.0
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL--------TKNPEQITS 122
I GK ++ G + VG + ++ A VS+ ++AL E+
Sbjct: 270 ALIGGKKVLICGYGD-VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIG 328
Query: 123 EADIVIAAAGVANLVRG---SWLKPGAVVLDVG 152
+ADIV+ A G +++ +K A++ ++G
Sbjct: 329 DADIVVTATGNKDIIMLEHIKAMKDHAILGNIG 361
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 27.9 bits (63), Expect = 2.3
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGL----PTSLLL-----QRHHATVSIVH 111
G + L + I +++G + L +L + R + ++
Sbjct: 103 GYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN 162
Query: 112 ALT-KNPEQITSEADIVIAAAGV------ANLVRGSWLKPGAVVLDV 151
+ + E E DI+I +++ + L +V D+
Sbjct: 163 KINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDI 209
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 27.8 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 118 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 161
E AD+VI A LV G + +KPGAV+ VD+++D
Sbjct: 226 EGAVKRADLVIGAV----LVPGAKAPKLVSNSLVAHMKPGAVL-------VDIAID 270
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold,
helix bundle, oxidoreductase; 1.75A {Methanocaldococcus
jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A*
3daf_A* 3dag_A* 3f46_A* 3h65_A*
Length = 358
Score = 27.8 bits (61), Expect = 2.6
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 113 LTKNPEQITSEADIVIAAAGVANLVRG------SWLKPGAVVLDVGTCPVDV 158
+T + + ADIVI N + GA+V T P
Sbjct: 131 VTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTK 182
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 27.8 bits (62), Expect = 2.7
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 36/118 (30%)
Query: 64 PKGCIELLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------- 110
G + S + K VVIG ++ G + A V I
Sbjct: 348 SSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGA------KEKGAKVVIANRTYERAL 401
Query: 111 ----------HALTKNPEQITSEADIVIAAAGV-------ANLVRGSWLKPGAVVLDV 151
+LT + ++ + + LK A+V D
Sbjct: 402 ELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDA 459
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 27.8 bits (63), Expect = 3.1
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 118 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 161
++ AD++I A LV G S +K GAV+ VDV+VD
Sbjct: 224 KKSVQHADLLIGAV----LVPGAKAPKLVTRDMLSLMKEGAVI-------VDVAVD 268
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 27.7 bits (61), Expect = 3.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 132 GVANLVRGSWLKPGAVVLDVG 152
G + + GA VLD+G
Sbjct: 71 GCGSTLPADGSLEGATVLDLG 91
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 27.8 bits (63), Expect = 3.1
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 23/56 (41%)
Query: 118 EQITSEADIVIAAAGVANLVRG------------SWLKPGAVVLDVGTCPVDVSVD 161
E +EAD++I A LV G ++ G+V+ VDV+VD
Sbjct: 225 ETAVAEADLLIGAV----LVPGRRAPILVPASLVEQMRTGSVI-------VDVAVD 269
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 26.6 bits (59), Expect = 3.4
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 161 DPSCEYGYRLMGDVCY 176
DP C + CY
Sbjct: 1 DPGCLPDWSSYKGHCY 16
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 27.6 bits (62), Expect = 3.5
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 37/123 (30%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGLP------------TSLLLQRHHATVS 108
G I + SG ++ GK V++G + ++ A
Sbjct: 134 GHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK 193
Query: 109 IVHALTKNPEQITS------------EADIVI--------AAAGVANLVRGSWLKPGAVV 148
V+ T +T ADI+ + + S L+P +V
Sbjct: 194 RVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLV 253
Query: 149 LDV 151
+
Sbjct: 254 TEC 256
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 27.3 bits (61), Expect = 3.9
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 66 GCIELL---IRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL-- 113
GC E L IR G ++M GK AVV G + VG ++ L A V + + AL
Sbjct: 228 GCKESLVDGIRRGTDVMMAGKVAVVCGYGD-VGKGSAQSLAGAGARVKVTEVDPICALQA 286
Query: 114 ------TKNPEQITSEADIVIAAAGVANLVRG---SWLKPGAVVLDVG 152
+ S ADIV+ G +++ +K +V ++G
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIG 334
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 27.1 bits (61), Expect = 4.0
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 29/110 (26%)
Query: 70 LLIRSGVEIMGKNAVVIG-----RSNIVGLPTS----------------LLLQRHHATVS 108
L + + GK +VIG R L ++ L++ S
Sbjct: 131 LEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 109 IVHALTKNPEQITSEADIVIAAAGV-------ANLVRGSWLKPGAVVLDV 151
+L + ++ +E DI+I V + L+PG +V D+
Sbjct: 191 AYFSLAEAETRL-AEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDI 239
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 27.0 bits (60), Expect = 4.0
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 135 NLVRGSWLKPGAVVLDVGT 153
+ ++L+ +LD+G
Sbjct: 21 YPIIHNYLQEDDEILDIGC 39
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 27.1 bits (60), Expect = 4.0
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 117 PEQITSEADIVI------AAAGVANLVRGSWLKPGAVVLDVGTCPVDVS 159
++ E D++ AA VA G L GA+ D +C V
Sbjct: 77 VAEVAGECDVIFSLVTAQAALEVAQQA-GPHLCEGALYADFTSCSPAVK 124
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 26.6 bits (59), Expect = 4.4
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 114 TKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDV 151
+ + +E V ++ V L G LDV
Sbjct: 3 HHHHHHLEAEESRVPSSVSVTVAHD--LLLAGHRYLDV 38
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 26.8 bits (60), Expect = 5.0
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSI------VHALTKNPEQITSEA------DIV 127
++IG S +G L++ ++ V N + I D +
Sbjct: 3 AMKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAI 62
Query: 128 IAAAGVANL 136
++A G A
Sbjct: 63 VSATGSATF 71
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 27.1 bits (60), Expect = 5.1
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 91 IVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
+ V + E++T + +V+ A G + R
Sbjct: 118 WDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFR 165
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 26.9 bits (60), Expect = 6.5
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 71 LIRSGVEIMGKNAVV-IGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 129
L VE +G + I + + V N E D ++
Sbjct: 581 LHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVL 640
Query: 130 AAG 132
G
Sbjct: 641 VTG 643
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 26.4 bits (57), Expect = 8.0
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI 120
M K ++G + GL L L++H V++ + P++
Sbjct: 21 MKKRIGIVG-AGTAGLHLGLFLRQHDVDVTVYTD--RKPDEY 59
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 26.0 bits (58), Expect = 8.3
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 36 EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE---LLIRSGVEIMGKN---------A 83
+ NL G PL G E LLI G +I ++
Sbjct: 103 ARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Query: 84 VVIGRSNIVGLPTSLLLQRHHATV 107
++ +LLL +
Sbjct: 162 ILQPNKTFACQMYNLLLS-YDGGD 184
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 26.3 bits (59), Expect = 8.4
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGLPTSLLLQRHHATVSIV-------HAL 113
G ++L + VEI VV+G R+ + L + +V +
Sbjct: 108 GFGKMLSKFRVEIKNNICVVLGSGGAARAVLQY-----LKDNFAKDIYVVTRNPEKTSEI 162
Query: 114 TKNPEQIT------SEADIVIAAAGV-------ANLVRGSWLKPGAVVLDV 151
+ I+ + D++I + V + + +D+
Sbjct: 163 YGEFKVISYDELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDL 213
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 26.2 bits (57), Expect = 8.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 130 AAGVANLVRGSWLKPGAVVLDVGTCP 155
AA + + +K G +L +G
Sbjct: 63 AAALLKGLIELPVKEGDRILYLGIAS 88
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 26.3 bits (58), Expect = 8.5
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 66 GCIELL---IRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-----VHAL-- 113
GC L + + + GK V+ G + VG + ++ A V I + A+
Sbjct: 238 GCRHSLPDGLMRATDFLISGKIVVICGYGD-VGKGCASSMKGLGARVYITEIDPICAIQA 296
Query: 114 ------TKNPEQITSEADIVIAAAGVANLVRG---SWLKPGAVVLDVG 152
++I + D I G ++++ +K AVV ++G
Sbjct: 297 VMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIG 344
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 26.0 bits (58), Expect = 8.7
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 37/123 (30%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG-----RSNIVGL------------PTSLLLQRHHATVS 108
G + L +G +I+GK + G + + TV
Sbjct: 140 GYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE 199
Query: 109 IVHALTKNPEQITS------------EADIVI--------AAAGVANLVRGSWLKPGAVV 148
+++ T Q+ E+ I G L L+P +V
Sbjct: 200 KINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIV 259
Query: 149 LDV 151
DV
Sbjct: 260 SDV 262
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 26.5 bits (59), Expect = 8.8
Identities = 12/87 (13%), Positives = 18/87 (20%), Gaps = 25/87 (28%)
Query: 19 HQLMHLDEGKILDAVSLEKDVDGFHPLNI----GNLAM----------------RGREPL 58
H L+ + E +P GN + L
Sbjct: 39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKL 98
Query: 59 FIPCTPKGC---IELLIRSGVEIMGKN 82
G E + R V I+
Sbjct: 99 HTEA--AGSYAITEPITRESVNIIDPR 123
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 26.0 bits (58), Expect = 9.2
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 124 ADIVIAAAGVANLVRGS--WLKPGAVVLDVGTCPVDVSVDPS 163
+++ AGV V + P A + VGT D+ + +
Sbjct: 230 NQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSA 271
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 26.2 bits (57), Expect = 9.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 142 LKPGAVVLDVG 152
L+PG VV V
Sbjct: 116 LRPGCVVASVP 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,463,408
Number of extensions: 216664
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 78
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)