RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027976
(216 letters)
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 170
Score = 158 bits (400), Expect = 6e-50
Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 42 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 101
+N G LA FIPCTPKGC+EL+ +GV I G++AVV+GRS IVG P LL
Sbjct: 1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60
Query: 102 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 161
++ATV+ H+ T + ++ ++ DI++ A G +V+G W+KPGA+V+D G V D
Sbjct: 61 WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---D 117
Query: 162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 211
G +++GDV Y+EA AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 118 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 166
Score = 150 bits (379), Expect = 7e-47
Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 42 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 101
FHP N+G L R P PCTP+G + LL R ++ G NAVVIG SNIVG P S+ L
Sbjct: 1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58
Query: 102 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 161
T ++ H TKN AD++I A G + G W+K GA+V+DVG ++
Sbjct: 59 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---- 114
Query: 162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213
+++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL + +
Sbjct: 115 -----NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH 161
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 120 bits (302), Expect = 3e-35
Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 56/186 (30%)
Query: 61 PCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 111
PCTP +++L + G + GK +VI RS IVG P + LL ATV V
Sbjct: 1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60
Query: 112 ALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLKPG 145
++ + ++D+VI N ++K G
Sbjct: 61 VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120
Query: 146 AVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT 205
AV ++ ++ AS+ P+ G V T+AMLL N
Sbjct: 121 AVCINFACT------------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNM 159
Query: 206 LDSAKR 211
L +
Sbjct: 160 LRLVRN 165
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 70.0 bits (171), Expect = 5e-16
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 12 CQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI 68
I++ + + + V EKDV+G + + NL I
Sbjct: 91 NGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYH--NVRYLDKENRLKSI 145
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 121
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 23 HLDEGKILDAVSLEKDVDG 41
+D K+L+ + +KDVDG
Sbjct: 103 GIDNVKVLERIHPDKDVDG 121
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 33.9 bits (77), Expect = 0.004
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 23 HLDEGKILDAVSLEKDVDG 41
++ ++++A++ EKDVDG
Sbjct: 107 SINTEEVINAIAPEKDVDG 125
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
methyltransferase {Red algae (Galdieria sulphuraria)
[TaxId: 130081]}
Length = 282
Score = 30.1 bits (66), Expect = 0.18
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 123 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYE 177
EA + + L L+ A LD+G + ++G +
Sbjct: 46 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP 100
>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 237
Score = 28.2 bits (62), Expect = 0.72
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
+ ++ +V G + +GL + L V++ H + P+ + V + V
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFT 65
>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven
(Hemitripterus americanus) [TaxId: 8094]}
Length = 129
Score = 26.2 bits (56), Expect = 1.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 162 PSCEYGYRLMGDVCY 176
P+C G++ +GD C
Sbjct: 5 PNCPAGWQPLGDRCI 19
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 26.5 bits (57), Expect = 2.5
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV 110
K VV+G S ++GL ++L+L R +V I+
Sbjct: 7 KRVVVLG-SGVIGLSSALILARKGYSVHIL 35
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 26.3 bits (58), Expect = 2.8
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN 135
GK +V G + +G + R A V + L +++ + +
Sbjct: 5 GKGVLVTGGARGIGRAIAQAFAREGALV-ALCDLRPEGKEVAEAIGGAFFQVDLED 59
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase
{Pseudomonas fragi [TaxId: 296]}
Length = 260
Score = 25.9 bits (56), Expect = 3.3
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
GK AVV G ++ +GL + L A + +++ E A +
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADI-VLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 140 SWLKPGAVVLDVGTC-----PVDVSVDPSCEYGYRLMGDVCYEEAM 180
K AV V +D+ V+ + L+ D E+
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWD 108
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 25.7 bits (55), Expect = 3.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 133 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 172
A L R +KPG +LD+G+ ++ + ++G G
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 191
Score = 25.6 bits (55), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 63 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH 104
T + L+++ +G + GK AVV+ + VG+ ++ LL
Sbjct: 5 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEG 47
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 251
Score = 25.8 bits (56), Expect = 4.0
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
G+ A+V G S +G + L +V + +N E+ + A + GV
Sbjct: 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVAS---RNLEEASEAAQKLTEKYGV 55
>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 24.1 bits (52), Expect = 4.2
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 145 GAVVLDVGTCPVDVSVDPSCEYGYRLMGD 173
G V + C GY L G
Sbjct: 11 GEYWPRSPYYNVSDEISFHCYDGYTLRGS 39
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.8 bits (56), Expect = 4.3
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
GK+ ++ G SN +G +++ + A V+I +N +++ ++ A A +
Sbjct: 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITG---RNEDRLEETKQQILKAGVPAEKIN- 59
Query: 140 SWLKPGAVVLDV 151
AVV DV
Sbjct: 60 ------AVVADV 65
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 234
Score = 25.4 bits (55), Expect = 4.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 130
K +V+ S +G + +L + A V+I +N E + +
Sbjct: 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICA---RNEELLKRSGHRYVVC 51
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 25.5 bits (56), Expect = 5.1
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 59 FIPCTPK-----GCIELLIRSGVEIMGKNAVVIGRSNIV 92
+I +P+ G IEL R V + G + + S ++
Sbjct: 274 YINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLI 312
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial
(DECR) {Human (Homo sapiens), [TaxId: 9606]}
Length = 294
Score = 25.5 bits (55), Expect = 5.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA 134
GK A + G +G + LL A I + + + + A+ + + G
Sbjct: 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIAS---RKMDVLKATAEQISSQTGNK 76
>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 244
Score = 25.3 bits (55), Expect = 5.4
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 131
G+ +V G +G T L A V V + + + E +
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVC 58
>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus
bisporus) [TaxId: 5341]}
Length = 260
Score = 25.4 bits (55), Expect = 5.5
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
+ K +V G + +GL + + A V++++ ++ + V GV
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY---RSAADAVEVTEKVGKEFGV 59
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 25.0 bits (54), Expect = 6.5
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI 120
KN + + +GL TS L + + ++ +NP +
Sbjct: 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 25.0 bits (53), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 133 VANLVRGSWLKPGAVVLDVGT 153
+A L++ + LK VLDV T
Sbjct: 4 LAKLMQIAALKGNEEVLDVAT 24
>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum
[TaxId: 144185]}
Length = 258
Score = 25.1 bits (54), Expect = 6.8
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
+ ++ G + +G T++ L A +S+V + E + + V+ A A ++
Sbjct: 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVD---VSSEGLEASKAAVLETAPDAEVL-- 58
Query: 140 SWLKPGAVVLDV 151
V DV
Sbjct: 59 ------TTVADV 64
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 241
Score = 25.1 bits (54), Expect = 6.8
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS 140
++A+V G ++ +G +L L+ V ++ + + I E D+ + R
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQ 61
Query: 141 WLKPGAVVLDVGTCPVDVSV----DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPM 196
P V+ + + P +R + +V + + P
Sbjct: 62 EEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPD 121
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase
{Lactobacillus brevis [TaxId: 1580]}
Length = 251
Score = 25.0 bits (54), Expect = 7.0
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----HALTKNPEQITSEADIVIAAAGVAN 135
GK A++ G + +GL + A V I K + + + I ++
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD 65
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 24.9 bits (53), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 66 GCIELLIRSGVEIMGKNAVVIG 87
G I + SG +I GK V++G
Sbjct: 4 GHIRAIKESGFDIKGKTMVLLG 25
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 25.0 bits (54), Expect = 7.6
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
GK A++ G +G ++ A+V + N + D + G A R
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSD---INADAANHVVDEIQQLGGQAFACRC 67
Query: 140 SWLKPGAV 147
+
Sbjct: 68 DITSEQEL 75
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 25.1 bits (54), Expect = 7.6
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 130 AAGVANLVRGSWLKPGAVVLDVGT 153
AA + ++ +K + +L +G
Sbjct: 60 AAAIIKGLKVMPIKRDSKILYLGA 83
>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 242
Score = 24.9 bits (54), Expect = 7.8
Identities = 11/52 (21%), Positives = 16/52 (30%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 131
G A+V G +G T L A V V + + E +
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVC 56
>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 236
Score = 24.8 bits (53), Expect = 8.3
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIV 110
+ +V G +G + + V+ +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASI 32
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 24.8 bits (53), Expect = 8.7
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
GK +V G +GL T+L L ++++ N E + V A
Sbjct: 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLD---MNREALEKAEASVREKGVEARSYVC 61
Query: 140 SWLKPGAV 147
AV
Sbjct: 62 DVTSEEAV 69
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 24.6 bits (53), Expect = 8.8
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH----ALTKNPEQITSEADIVIAAAGVAN 135
K A++ G + +G T+ L R+ A V I K I S I V
Sbjct: 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK 65
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 24.6 bits (53), Expect = 9.1
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
K ++ G SN +G T++L + A V+I ++ E++ I++ + V
Sbjct: 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITG---RSSERLEETRQIILKSGVSEKQVN- 60
Query: 140 SWLKPGAVVLDV 151
+VV DV
Sbjct: 61 ------SVVADV 66
>d1m5sa2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanosarcina barkeri
[TaxId: 2208]}
Length = 152
Score = 24.3 bits (53), Expect = 9.1
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 178 EAMR-LASVITPVPGGV 193
+ + L ITP PGG+
Sbjct: 40 DTIAELEGTITPFPGGI 56
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 24.7 bits (53), Expect = 9.3
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
G A+V G S +G L A V +N +++ +I
Sbjct: 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCS---RNEKELDECLEIWREKGLNVEGSVC 62
Query: 140 SWLKPGAV------VLDVGTCPVDVSVDPSCEYGYRLMGDVCYEE 178
L V V +++ V+ + ++ D ++
Sbjct: 63 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKD 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 814,946
Number of extensions: 37564
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 72
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)