BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027977
MASATATALCPNHVRNSPSLLIPAVSSNPLTVSQNSKCSFSLPAKTGSRRAHNLKLKHPP
TPCASAEGLPGELTEDSKFVPLNADDPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLE
VIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLE
PAVFAALVPNSADKPLQELIEEVMGDHEMLTGQQSS

High Scoring Gene Products

Symbol, full name Information P value
AT3G10405 protein from Arabidopsis thaliana 5.7e-59

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027977
        (216 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504955888 - symbol:AT3G10405 "AT3G10405" speci...   605  5.7e-59   1


>TAIR|locus:504955888 [details] [associations]
            symbol:AT3G10405 "AT3G10405" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009555 "pollen development"
            evidence=IMP] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555
            UniGene:At.45878 EMBL:BT029448 IPI:IPI00542781 RefSeq:NP_683545.2
            UniGene:At.23666 PRIDE:A0JQ78 EnsemblPlants:AT3G10405.1
            GeneID:820204 KEGG:ath:AT3G10405 TAIR:At3g10405 eggNOG:NOG258678
            HOGENOM:HOG000235068 InParanoid:A0JQ78 OMA:MFIDAFP PhylomeDB:A0JQ78
            ProtClustDB:CLSN2690834 Genevestigator:A0JQ78 InterPro:IPR016621
            Pfam:PF12646 Uniprot:A0JQ78
        Length = 212

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 125/201 (62%), Positives = 149/201 (74%)

Query:    23 PAVSSNPLTVSQNSKCSFSLPAK----TGSRRAH-NLKLKHPPTPCA--SAEGLPGELTE 75
             P  SS+  T   +S   F L       T S+  H N KLK     C   SA+ +P  L E
Sbjct:    13 PTSSSSSYTYLGSSSRIFGLVTSSLLWTKSKSHHTNTKLKKQKL-CVRNSAQEIPKTLEE 71

Query:    76 DSKFVPLNADDPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWE 135
             DSKFVPL+  DP FGPP LLLLG ++ EA KI++ LKELDGEF+E++FCT+DMI RSLWE
Sbjct:    72 DSKFVPLDPQDPRFGPPVLLLLGLQLHEAQKIQELLKELDGEFMEIVFCTDDMIKRSLWE 131

Query:   136 AMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLEPAVFAALVPNSADKP 195
             A+ TKQ +L+ VK+AESLPRICFLSGL+GEEMMMFI+AFPETGLEP VFAA+VPNSADKP
Sbjct:   132 AVTTKQPDLKRVKIAESLPRICFLSGLTGEEMMMFIDAFPETGLEPVVFAAMVPNSADKP 191

Query:   196 LQELIEEVMGDHEMLTGQQSS 216
             + EL EE+MGDHE+LTG  SS
Sbjct:   192 IFELTEEIMGDHELLTGSSSS 212


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       216   0.00088  112 3  11 22  0.41    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.01u 0.12s 21.13t   Elapsed:  00:00:01
  Total cpu time:  21.01u 0.12s 21.13t   Elapsed:  00:00:01
  Start:  Thu May  9 20:37:58 2013   End:  Thu May  9 20:37:59 2013

Back to top