BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027977
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
 pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
 pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
          Length = 456

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 135 EAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLEPAVFA 185
           ++M+T Q N+++  +++ +P     +G   E++ +F  A PE+  +  V A
Sbjct: 55  DSMHTMQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMA 105


>pdb|3SIK|A Chain A, Crystal Structure Of The Bacillus Anthracis Hemophore
           Isdx1 Complexed With Heme
 pdb|3SIK|B Chain B, Crystal Structure Of The Bacillus Anthracis Hemophore
           Isdx1 Complexed With Heme
          Length = 132

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 89  FGPPALL-------LLGFKVEEAVKIRQFLKELDGEFLEVIFCTED 127
           F  PA L        + FKV+++  I+ F  E DG+F+E    +E+
Sbjct: 39  FESPATLTVKNGKQYVSFKVKDSTSIKSFQVEKDGQFVETTVLSEN 84


>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
           Mycobacterium Tuberculosis
 pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
           Mycobacterium Tuberculosis
          Length = 447

 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 117 EFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176
           + LE+I  +E+ +PR++ +A  +  TN    K AE LP   +  G    +++  +     
Sbjct: 46  DTLEMI-ASENFVPRAVLQAQGSVLTN----KYAEGLPGRRYYGGCEHVDVVENLARDRA 100

Query: 177 TGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTG 212
             L  A FA + P+S  +    ++  +M   E L G
Sbjct: 101 KALFGAEFANVQPHSGAQANAAVLHALMSPGERLLG 136


>pdb|3SZ6|A Chain A, Isdx1, An Anthrax Hemophore
 pdb|3SZ6|B Chain B, Isdx1, An Anthrax Hemophore
          Length = 121

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 89  FGPPALL-------LLGFKVEEAVKIRQFLKELDGEFLEVIFCTED 127
           F  PA L        + FKV+++  I+ F  E DG+F+E    +E+
Sbjct: 34  FESPATLTVKNGKQYVSFKVKDSTSIKSFQVEKDGQFVETTVLSEN 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,290,064
Number of Sequences: 62578
Number of extensions: 248455
Number of successful extensions: 509
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)