BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027977
         (216 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9X794|GLYA_MYCLE Serine hydroxymethyltransferase OS=Mycobacterium leprae (strain TN)
           GN=glyA PE=3 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 119 LEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178
           LE+I  +E+ +PRS+ +A  +  TN    K AE LP   +  G    +++  I       
Sbjct: 27  LEMI-ASENFVPRSVLQAQGSVLTN----KYAEGLPGRRYYDGCEHVDVVENIARDRAKA 81

Query: 179 LEPAVFAALVPNSADKPLQELIEEVMGDHEMLTG 212
           L  A FA + P+S  +    ++  +M   E L G
Sbjct: 82  LFGADFANVQPHSGAQANAAVLHALMSPGERLLG 115


>sp|B8ZSH2|GLYA_MYCLB Serine hydroxymethyltransferase OS=Mycobacterium leprae (strain
           Br4923) GN=glyA PE=3 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 119 LEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178
           LE+I  +E+ +PRS+ +A  +  TN    K AE LP   +  G    +++  I       
Sbjct: 27  LEMI-ASENFVPRSVLQAQGSVLTN----KYAEGLPGRRYYDGCEHVDVVENIARDRAKA 81

Query: 179 LEPAVFAALVPNSADKPLQELIEEVMGDHEMLTG 212
           L  A FA + P+S  +    ++  +M   E L G
Sbjct: 82  LFGADFANVQPHSGAQANAAVLHALMSPGERLLG 115


>sp|Q2HJC0|NGRN_BOVIN Neugrin OS=Bos taurus GN=NGRN PE=2 SV=2
          Length = 287

 Score = 30.4 bits (67), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 14  VRNSPSLLIPAVSSNPLTVSQNSKCSFSLPAKTGSRRAHN-------LKLKHPPTPCASA 66
            R+ P L  P  SS PL+  Q+   S  +P    S R H        ++L    T   + 
Sbjct: 147 ARSIPELPGPGDSSKPLSAGQSVSGSLLIPGDEASSRGHGHSTALKAIELNTQSTNITTR 206

Query: 67  E-----GLPGELTEDSKFVPLNADDPT 88
           +     G+ G L E   FVP+ A  PT
Sbjct: 207 QTERNKGVQG-LEEGKDFVPVAAGHPT 232


>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 124 CTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLEPAV 183
           C ED    SL  AM   Q    A  +A  L ++  L+G S     ++ EA+        V
Sbjct: 684 CKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDP---VYAEAYVHVNQYDIV 740

Query: 184 FAALVPNSADKPLQELIEEV--MGDHEML 210
              LV N     LQ    E+  +GD +++
Sbjct: 741 LDVLVVNQTSDTLQNCTLELATLGDLKLV 769


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,307,371
Number of Sequences: 539616
Number of extensions: 3371397
Number of successful extensions: 7996
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7992
Number of HSP's gapped (non-prelim): 20
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)