Query 027977
Match_columns 216
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12646 DUF3783: Domain of un 99.8 2.1E-21 4.6E-26 137.4 7.3 58 154-211 1-58 (58)
2 PF12646 DUF3783: Domain of un 94.5 0.13 2.9E-06 36.2 5.7 48 91-138 1-48 (58)
3 PRK00945 acetyl-CoA decarbonyl 78.8 20 0.00044 30.6 9.1 99 92-197 36-153 (171)
4 COG2247 LytB Putative cell wal 78.5 6.6 0.00014 37.1 6.5 97 88-196 73-171 (337)
5 TIGR00315 cdhB CO dehydrogenas 75.6 23 0.0005 30.0 8.5 101 92-196 29-144 (162)
6 PRK00099 rplJ 50S ribosomal pr 69.3 48 0.001 27.5 9.0 90 92-190 21-113 (172)
7 PF00466 Ribosomal_L10: Riboso 66.3 32 0.00069 25.6 6.7 76 92-175 21-99 (100)
8 PLN02321 2-isopropylmalate syn 65.4 1.1E+02 0.0023 31.4 12.0 140 64-212 72-221 (632)
9 PF10740 DUF2529: Protein of u 62.7 26 0.00057 30.3 6.2 75 120-194 40-124 (172)
10 COG0276 HemH Protoheme ferro-l 61.7 28 0.0006 32.7 6.7 122 89-212 3-149 (320)
11 cd00379 Ribosomal_L10_P0 Ribos 60.7 36 0.00078 27.1 6.4 89 92-189 18-109 (155)
12 COG2607 Predicted ATPase (AAA+ 60.7 12 0.00027 34.6 4.1 78 93-180 87-169 (287)
13 cd05797 Ribosomal_L10 Ribosoma 59.3 76 0.0016 25.7 8.2 89 92-189 20-111 (157)
14 COG2185 Sbm Methylmalonyl-CoA 57.0 58 0.0012 27.4 7.2 78 91-183 12-96 (143)
15 COG0416 PlsX Fatty acid/phosph 55.6 83 0.0018 30.0 8.7 93 92-190 32-134 (338)
16 PRK00915 2-isopropylmalate syn 54.6 99 0.0022 30.4 9.5 113 86-214 14-133 (513)
17 PRK15367 type III secretion sy 53.9 45 0.00097 32.3 6.8 46 92-138 164-211 (395)
18 TIGR00640 acid_CoA_mut_C methy 53.4 1.2E+02 0.0026 24.4 9.7 76 91-181 2-84 (132)
19 PF00682 HMGL-like: HMGL-like 52.8 60 0.0013 27.6 6.9 96 99-205 11-112 (237)
20 COG1880 CdhB CO dehydrogenase/ 52.6 1E+02 0.0022 26.7 8.1 80 92-177 37-132 (170)
21 cd03411 Ferrochelatase_N Ferro 51.7 43 0.00093 27.4 5.6 112 93-206 2-140 (159)
22 PF10087 DUF2325: Uncharacteri 47.8 1.2E+02 0.0025 22.7 7.3 72 93-180 1-77 (97)
23 PF10126 Nit_Regul_Hom: Unchar 47.5 30 0.00064 28.1 3.8 88 92-206 3-92 (110)
24 cd06326 PBP1_STKc_like Type I 45.8 2E+02 0.0043 24.8 9.1 80 90-183 135-220 (336)
25 PRK14847 hypothetical protein; 45.2 2E+02 0.0043 27.2 9.6 104 97-210 49-160 (333)
26 TIGR00973 leuA_bact 2-isopropy 45.2 1.9E+02 0.0041 28.4 9.7 104 97-212 18-128 (494)
27 PTZ00135 60S acidic ribosomal 43.8 1.1E+02 0.0024 28.4 7.6 81 92-177 25-108 (310)
28 PLN03228 methylthioalkylmalate 43.7 1.5E+02 0.0033 29.4 8.9 114 97-212 101-220 (503)
29 PF11303 DUF3105: Protein of u 43.4 72 0.0016 26.1 5.6 67 92-176 51-119 (130)
30 TIGR00090 iojap_ybeB iojap-lik 42.5 51 0.0011 25.4 4.4 70 105-198 3-76 (99)
31 cd03414 CbiX_SirB_C Sirohydroc 42.5 1.5E+02 0.0032 22.4 9.6 106 93-205 2-114 (117)
32 cd05795 Ribosomal_P0_L10e Ribo 41.9 1.9E+02 0.004 24.3 8.1 80 93-177 19-101 (175)
33 TIGR00106 uncharacterized prot 40.9 59 0.0013 25.1 4.6 49 164-214 18-66 (97)
34 PF05673 DUF815: Protein of un 40.8 46 0.001 30.3 4.5 103 91-208 52-162 (249)
35 COG1647 Esterase/lipase [Gener 40.0 2.1E+02 0.0045 26.2 8.4 101 90-196 14-125 (243)
36 COG4075 Uncharacterized conser 38.0 41 0.00089 27.1 3.3 86 93-205 4-91 (110)
37 PRK04019 rplP0 acidic ribosoma 37.1 3.5E+02 0.0075 25.1 10.0 78 93-177 24-104 (330)
38 PRK11538 ribosome-associated p 35.3 1.9E+02 0.004 22.7 6.6 73 103-199 6-82 (105)
39 COG1999 Uncharacterized protei 35.1 2.8E+02 0.0061 23.8 8.3 82 86-176 63-153 (207)
40 TIGR02495 NrdG2 anaerobic ribo 33.6 1.5E+02 0.0033 24.1 6.2 107 92-202 64-178 (191)
41 PRK12595 bifunctional 3-deoxy- 32.9 2.4E+02 0.0053 26.6 8.1 120 77-203 146-285 (360)
42 TIGR00109 hemH ferrochelatase. 32.8 1.6E+02 0.0034 27.1 6.7 116 91-207 5-146 (322)
43 cd06352 PBP1_NPR_GC_like Ligan 32.5 3.2E+02 0.0068 24.4 8.5 70 100-180 151-220 (389)
44 COG0011 Uncharacterized conser 32.2 66 0.0014 25.5 3.6 49 164-214 20-68 (100)
45 TIGR02196 GlrX_YruB Glutaredox 32.1 1.2E+02 0.0027 19.7 4.6 71 94-171 2-73 (74)
46 PF14605 Nup35_RRM_2: Nup53/35 32.1 60 0.0013 22.2 3.0 25 91-115 1-25 (53)
47 cd06333 PBP1_ABC-type_HAAT_lik 31.7 3.3E+02 0.0072 23.3 9.4 84 89-186 131-220 (312)
48 PLN02449 ferrochelatase 31.7 4.9E+02 0.011 25.9 10.3 113 91-204 89-230 (485)
49 TIGR00423 radical SAM domain p 31.2 1.2E+02 0.0025 27.4 5.5 72 99-182 36-121 (309)
50 COG4274 Uncharacterized conser 29.9 1.3E+02 0.0029 24.1 5.0 69 101-174 29-103 (104)
51 PLN03115 ferredoxin--NADP(+) r 29.8 2.1E+02 0.0045 27.1 7.1 42 154-210 319-363 (367)
52 cd03412 CbiK_N Anaerobic cobal 29.6 2.4E+02 0.0053 22.2 6.5 23 153-175 75-97 (127)
53 PF03102 NeuB: NeuB family; I 28.9 2.2E+02 0.0047 25.5 6.8 101 98-203 52-170 (241)
54 COG0244 RplJ Ribosomal protein 28.6 3.6E+02 0.0079 22.8 7.9 89 93-190 24-116 (175)
55 PRK13846 putative glycerol-3-p 28.4 4.7E+02 0.01 24.7 9.1 96 92-191 36-136 (316)
56 cd06371 PBP1_sensory_GC_DEF_li 28.3 2.8E+02 0.0061 25.3 7.6 84 87-181 128-220 (382)
57 cd06382 PBP1_iGluR_Kainate N-t 28.1 4E+02 0.0087 23.1 9.9 82 89-184 127-211 (327)
58 COG0799 Uncharacterized homolo 28.1 1.2E+02 0.0027 24.5 4.6 75 101-199 4-82 (115)
59 PF14214 Helitron_like_N: Heli 27.3 79 0.0017 26.1 3.5 48 153-204 72-125 (184)
60 PHA02096 hypothetical protein 26.0 68 0.0015 25.1 2.6 35 86-120 61-96 (103)
61 TIGR01608 citD citrate lyase a 25.9 1.2E+02 0.0027 23.8 4.1 41 98-138 40-80 (92)
62 cd06341 PBP1_ABC_ligand_bindin 25.8 2.5E+02 0.0054 24.4 6.6 69 101-183 147-217 (341)
63 cd06167 LabA_like LabA_like pr 25.8 1.9E+02 0.0041 22.5 5.3 86 91-186 39-131 (149)
64 PF01910 DUF77: Domain of unkn 25.6 73 0.0016 24.3 2.8 48 165-214 17-64 (92)
65 cd02072 Glm_B12_BD B12 binding 25.5 3.7E+02 0.008 21.9 7.7 62 105-181 17-81 (128)
66 PF12738 PTCB-BRCT: twin BRCT 25.3 27 0.00058 23.8 0.3 24 93-116 2-25 (63)
67 COG1618 Predicted nucleotide k 25.3 1.4E+02 0.0031 26.0 4.8 100 80-200 67-172 (179)
68 COG1737 RpiR Transcriptional r 24.6 3.7E+02 0.008 23.9 7.5 79 86-181 125-207 (281)
69 TIGR02666 moaA molybdenum cofa 24.6 2E+02 0.0044 25.8 5.9 50 156-206 160-217 (334)
70 PRK09548 PTS system ascorbate- 24.3 91 0.002 31.8 3.9 83 93-177 508-599 (602)
71 cd06345 PBP1_ABC_ligand_bindin 24.1 4.9E+02 0.011 22.8 8.7 80 89-182 142-227 (344)
72 PTZ00240 60S ribosomal protein 23.9 3.9E+02 0.0085 25.1 7.7 82 92-177 23-115 (323)
73 cd06347 PBP1_ABC_ligand_bindin 23.8 4.6E+02 0.01 22.4 9.0 69 102-184 151-221 (334)
74 PF00308 Bac_DnaA: Bacterial d 23.6 2.3E+02 0.005 24.3 5.8 108 94-203 37-155 (219)
75 PRK14465 ribosomal RNA large s 23.5 2.1E+02 0.0046 26.9 5.9 60 92-180 259-320 (342)
76 TIGR00262 trpA tryptophan synt 23.3 1E+02 0.0022 27.4 3.7 45 154-200 116-160 (256)
77 PF08825 E2_bind: E2 binding d 23.3 41 0.00089 25.5 1.0 19 191-209 4-22 (84)
78 cd05013 SIS_RpiR RpiR-like pro 23.3 3.1E+02 0.0067 20.2 7.1 71 92-179 14-88 (139)
79 TIGR01501 MthylAspMutase methy 23.0 4.2E+02 0.0092 21.6 7.6 63 105-182 19-84 (134)
80 PRK00035 hemH ferrochelatase; 22.5 1.8E+02 0.0038 26.4 5.1 53 155-207 93-147 (333)
81 PRK01530 hypothetical protein; 22.5 1.2E+02 0.0026 24.1 3.5 26 151-176 80-105 (105)
82 PF13241 NAD_binding_7: Putati 22.3 2.8E+02 0.0061 20.8 5.4 78 92-179 8-86 (103)
83 COG1393 ArsC Arsenate reductas 22.3 4E+02 0.0087 21.1 8.1 46 93-138 2-48 (117)
84 CHL00200 trpA tryptophan synth 22.2 3E+02 0.0065 24.8 6.5 86 90-191 119-216 (263)
85 PRK03739 2-isopropylmalate syn 22.1 8E+02 0.017 24.5 10.4 106 98-211 48-159 (552)
86 PLN02363 phosphoribosylanthran 22.1 4.5E+02 0.0098 23.6 7.5 46 85-133 38-85 (256)
87 cd07921 PCA_45_Doxase_A_like S 22.0 1.4E+02 0.003 24.0 3.8 55 97-171 43-101 (106)
88 PF02410 Oligomerisation: Olig 21.8 3.5E+02 0.0075 20.5 5.9 70 104-197 2-76 (100)
89 cd06373 PBP1_NPR_like Ligand b 21.8 5E+02 0.011 23.4 7.9 26 155-181 203-228 (396)
90 PRK15404 leucine ABC transport 21.6 6.1E+02 0.013 23.0 9.9 81 90-184 160-246 (369)
91 COG1528 Ftn Ferritin-like prot 21.6 1.4E+02 0.003 25.8 4.0 46 166-211 53-98 (167)
92 PLN02834 3-dehydroquinate synt 21.6 2.6E+02 0.0056 27.0 6.3 74 99-176 353-430 (433)
93 TIGR01279 DPOR_bchN light-inde 21.6 1.6E+02 0.0035 27.8 4.7 29 91-119 153-182 (407)
94 PF11256 DUF3055: Protein of u 21.2 1.3E+02 0.0028 23.2 3.3 17 97-113 64-80 (81)
95 cd06336 PBP1_ABC_ligand_bindin 21.2 5.8E+02 0.012 22.5 9.1 83 89-184 136-224 (347)
96 PRK10329 glutaredoxin-like pro 21.1 3.3E+02 0.0072 19.7 6.0 73 94-174 3-76 (81)
97 COG0429 Predicted hydrolase of 21.0 4.4E+02 0.0096 25.3 7.5 90 75-188 57-155 (345)
98 PF02739 5_3_exonuc_N: 5'-3' e 20.8 2E+02 0.0044 24.0 4.8 34 103-139 87-120 (169)
99 cd06360 PBP1_alkylbenzenes_lik 20.6 5.5E+02 0.012 22.1 8.0 66 101-180 148-215 (336)
100 cd06388 PBP1_iGluR_AMPA_GluR4 20.5 5.6E+02 0.012 23.5 8.0 29 153-182 178-206 (371)
101 PF13348 Y_phosphatase3C: Tyro 20.4 79 0.0017 22.0 1.9 15 97-111 53-67 (68)
102 cd00316 Oxidoreductase_nitroge 20.3 3.3E+02 0.0071 24.7 6.4 83 90-177 151-248 (399)
103 PLN02591 tryptophan synthase 20.1 4E+02 0.0086 23.9 6.7 47 90-138 106-152 (250)
104 PRK14601 ruvA Holliday junctio 20.1 78 0.0017 27.2 2.2 19 94-112 58-77 (183)
105 TIGR02544 III_secr_YscJ type I 20.1 78 0.0017 27.3 2.1 46 157-202 21-73 (193)
106 TIGR03586 PseI pseudaminic aci 20.0 5.1E+02 0.011 24.2 7.7 81 98-183 73-165 (327)
No 1
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.85 E-value=2.1e-21 Score=137.35 Aligned_cols=58 Identities=31% Similarity=0.586 Sum_probs=56.5
Q ss_pred CcEEEEcCCCHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhh
Q 027977 154 PRICFLSGLSGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLT 211 (216)
Q Consensus 154 ~r~vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~ 211 (216)
++||||+||+++||+++|+++|+.|++.++||++||||.+|++.+|++||.+||+||+
T Consensus 1 e~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~~El~~Eh~~m~ 58 (58)
T PF12646_consen 1 EEFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLLEELKEEHEYMK 58 (58)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999999999999999996
No 2
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.53 E-value=0.13 Score=36.21 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=40.9
Q ss_pred CceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhc
Q 027977 91 PPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMN 138 (216)
Q Consensus 91 PpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~ 138 (216)
++.+++.||+.+|+.++-..++..|+...---.+|+.-..|++.+|+.
T Consensus 1 e~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~~ 48 (58)
T PF12646_consen 1 EEFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLLE 48 (58)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHHH
Confidence 478999999999999999999999994333345688899999999987
No 3
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=78.83 E-value=20 Score=30.64 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=61.3
Q ss_pred ceEEEecC---C-hHHHHHHHHHHHhcCCcceEEEEeCC------C--ch--hchHHHHhc-ccccchhhhhccCCCCcE
Q 027977 92 PALLLLGF---K-VEEAVKIRQFLKELDGEFLEVIFCTE------D--MI--PRSLWEAMN-TKQTNLEAVKVAESLPRI 156 (216)
Q Consensus 92 paILL~GF---~-~EE~~kIR~lL~elg~e~vkVi~vt~------e--~~--~~pLGel~~-~~~~d~e~~k~~~~~~r~ 156 (216)
.-++++|- . .+-.+.++++...+++ +|..... + -. ..-+|++-. ...+.|+.. .+.+.-..
T Consensus 36 rPlIivG~ga~~~~ea~e~l~elaEkl~i---PVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~-~g~~~~Dl 111 (171)
T PRK00945 36 RPLLVVGSLLLDDEELLDRAVKIAKKANI---PVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGL-DGNGNYDL 111 (171)
T ss_pred CcEEEECcCccccchHHHHHHHHHHHHCC---CEEEccccccccccCCccCCcccHHHHHhhccCchhhhh-cCCCCcCE
Confidence 34666665 2 4567789999999888 5554433 0 00 222333332 135677765 23346679
Q ss_pred EEEcCCCHHHHHHHHHHcccCCCCCccEEEEc----cCCCCCCHH
Q 027977 157 CFLSGLSGEEMMMFIEAFPETGLEPAVFAALV----PNSADKPLQ 197 (216)
Q Consensus 157 vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlT----PtN~~W~l~ 197 (216)
|||-|.+-.-.++++..+|.-- + ++.+.- --|.+|++.
T Consensus 112 vlfvG~~~~~~~~~l~~lk~f~--~-~~~~~~~~~y~~~a~~s~~ 153 (171)
T PRK00945 112 VIFIGVTYYYASQGLSALKHFS--P-LKTITIDRYYHPNADMSFP 153 (171)
T ss_pred EEEecCCchhHHHHHHHHhhcC--C-ceEEEecCCcCCCCceecC
Confidence 9999999999999999999632 2 333322 457788873
No 4
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=78.45 E-value=6.6 Score=37.13 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=62.1
Q ss_pred CCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCC--cEEEEcCCCHH
Q 027977 88 TFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLP--RICFLSGLSGE 165 (216)
Q Consensus 88 ~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~--r~vi~sGft~e 165 (216)
-++|..||.+|=...=-......|+++|+ .|+-+.=.+...+-..++..-+.++- +... .+|+.+|++-.
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~Gi---tV~RigG~nR~ETa~~v~~~~~~~yp-----~af~n~kvvvv~GwDy~ 144 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGI---TVKRIGGANRYETAEKVAKFFREDYP-----NAFKNVKVVVVYGWDYA 144 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCc---EEEEecCcchHHHHHHHHHHHHhhch-----hhhcCeEEEEEeccccH
Confidence 57899999999865444455568889999 66666666666665555552222333 2244 89999999998
Q ss_pred HHHHHHHHcccCCCCCccEEEEccCCCCCCH
Q 027977 166 EMMMFIEAFPETGLEPAVFAALVPNSADKPL 196 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l 196 (216)
. .++.++|+ |+=++ .-.-|-++..|..
T Consensus 145 ~--~~~e~~k~-~~~p~-~~~n~~~~~~~~~ 171 (337)
T COG2247 145 D--ALMELMKE-GIVPV-ILKNTSILVRWSR 171 (337)
T ss_pred H--HHHHHHhc-Cccee-Eeccccccccccc
Confidence 4 55556666 76333 3333444466763
No 5
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=75.56 E-value=23 Score=29.98 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=61.9
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCC----------chhchHHHHhc-ccccchhhhhccCCCCcEE
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTED----------MIPRSLWEAMN-TKQTNLEAVKVAESLPRIC 157 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e----------~~~~pLGel~~-~~~~d~e~~k~~~~~~r~v 157 (216)
+-++++|- ..+-.+.++++.+.+|+ +|...... .....+|++.. ...+.|+.. .|.+.-..+
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgi---PVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~-~g~g~~Dlv 104 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDL---PVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGF-DGEGNYDLV 104 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCC---CEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhc-cCCCCcCEE
Confidence 34555554 35778888889988888 55544422 12244454443 234667754 233466799
Q ss_pred EEcCCCHHHHHHHHHHcccCC-CCCccEEEEccCCCCCCH
Q 027977 158 FLSGLSGEEMMMFIEAFPETG-LEPAVFAALVPNSADKPL 196 (216)
Q Consensus 158 i~sGft~eEl~~~I~a~k~~G-l~~~ifAvlTPtN~~W~l 196 (216)
||-|..---..++|..+|.-- +..+-..-.---|.+|++
T Consensus 105 lfvG~~~y~~~~~ls~lk~f~~~~~i~l~~~y~pnA~~Sf 144 (162)
T TIGR00315 105 LFLGIIYYYLSQMLSSLKHFSHIVTIAIDKYYQPNADYSF 144 (162)
T ss_pred EEeCCcchHHHHHHHHHHhhcCcEEEEecCCCCCCCceec
Confidence 999999988899999999533 111111122245888887
No 6
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=69.35 E-value=48 Score=27.45 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=58.3
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.|+++++ +..++..+|+-|.+.|+ +++.+..-.+..-|+.. +++.....-.-+-.++|++-+-.++.
T Consensus 21 ~~v~v~~~~gl~~~~~~~lR~~lr~~~~---~~~V~KNtL~~~Al~~~------~~~~l~~~l~G~~al~fs~~d~~~~~ 91 (172)
T PRK00099 21 QSAVVADYRGLTVAQMTELRKKLREAGV---EYKVVKNTLARRALEGT------GFEGLDDLLKGPTAIAFSYEDPVAAA 91 (172)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHcCC---EEEEehhHHHHHHHhcC------CchhhhhhCcCCeEEEEeCCChHHHH
Confidence 35666655 69999999999999877 66666555544444432 23322112225668889988888899
Q ss_pred HHHHHcccCCCCCccEEEEccC
Q 027977 169 MFIEAFPETGLEPAVFAALVPN 190 (216)
Q Consensus 169 ~~I~a~k~~Gl~~~ifAvlTPt 190 (216)
.++..|.+..-...+++...+.
T Consensus 92 k~l~~f~K~~~~~~l~gg~~eg 113 (172)
T PRK00099 92 KVLKDFAKDNKKLEIKGGAIEG 113 (172)
T ss_pred HHHHHHHhhCcCceEEEEEECC
Confidence 9999886643234456666554
No 7
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=66.30 E-value=32 Score=25.59 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=53.0
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.|+++.+ +..++..||.-|.+.|+ +++.+....+...|+..-... ... ..-.-+-.++|+.-+-.++.
T Consensus 21 ~~v~v~~~~~l~~~~~~~lR~~l~~~~~---~~~v~KN~l~~~Al~~~~~~~--~l~---~~l~G~~~~if~~~d~~~~~ 92 (100)
T PF00466_consen 21 KYVIVVDYNGLSANQLQELRKELRKKGG---KFKVVKNTLMKKALKNTGFEE--ALS---PLLKGPTALIFSNEDPFEIA 92 (100)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTE---EEEECSHHHHHHHHHHHHTSS--SSS---CCTSSSEEEEEESSSHHHHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHhcCc---EEEEecHHHHHHHHhcCcccc--Ccc---ccccCCEEEEEECCCHHHHH
Confidence 45667665 69999999999999887 777887776666666443310 111 11235778999988888888
Q ss_pred HHHHHcc
Q 027977 169 MFIEAFP 175 (216)
Q Consensus 169 ~~I~a~k 175 (216)
.++..+.
T Consensus 93 k~l~~~~ 99 (100)
T PF00466_consen 93 KILKKFA 99 (100)
T ss_dssp HHHHHST
T ss_pred HHHHHhc
Confidence 8887764
No 8
>PLN02321 2-isopropylmalate synthase
Probab=65.35 E-value=1.1e+02 Score=31.38 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCCCCCcccccCCccccCCCC---CCCCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEE--eCCCchhchHHHHhc
Q 027977 64 ASAEGLPGELTEDSKFVPLNAD---DPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIF--CTEDMIPRSLWEAMN 138 (216)
Q Consensus 64 ~~~~~~~~~~~~d~~f~~~~~d---d~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~--vt~e~~~~pLGel~~ 138 (216)
.-||-+|..++. .+.+.+-+. |+.-++.. .|+.|+..+|-+.|.++|++.+.+=+ +++.+... +..+..
T Consensus 72 ~~~~~~~~~~~~-~~~V~I~DtTLRDGeQ~~g~----~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~-vr~i~~ 145 (632)
T PLN02321 72 PRPEYIPNRIDD-PNYVRIFDTTLRDGEQSPGA----TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEA-VKTIAK 145 (632)
T ss_pred CCcccccccCCC-CCceEEEECCCCccccCCCC----CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHH-HHHHHH
Confidence 346777777665 444444322 44444442 38999999999999999997666543 44455444 555544
Q ss_pred ccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCCCCCc-cEEEEcc----CCCCCCHHHHHHHHHHHHHHhhc
Q 027977 139 TKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLEPA-VFAALVP----NSADKPLQELIEEVMGDHEMLTG 212 (216)
Q Consensus 139 ~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~Gl~~~-ifAvlTP----tN~~W~l~eLieEL~~EHe~m~~ 212 (216)
....... . . .-..+++.++=...+.++..+++++..+.+.+ +|..+.+ .|.+++..|.++.+.+==+|.+.
T Consensus 146 ~~~~~v~-~-~-~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~ 221 (632)
T PLN02321 146 EVGNEVD-E-D-GYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARS 221 (632)
T ss_pred hcccCCC-c-c-ccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 2100000 0 0 00244555666666778888888765443333 3443333 36778888888776654444443
No 9
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=62.67 E-value=26 Score=30.29 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=42.1
Q ss_pred EEEEeCCCchhchHHHHhccccc-----chhhhh----ccCCCCcEEEEcCCCHH-HHHHHHHHcccCCCCCccEEEEcc
Q 027977 120 EVIFCTEDMIPRSLWEAMNTKQT-----NLEAVK----VAESLPRICFLSGLSGE-EMMMFIEAFPETGLEPAVFAALVP 189 (216)
Q Consensus 120 kVi~vt~e~~~~pLGel~~~~~~-----d~e~~k----~~~~~~r~vi~sGft~e-El~~~I~a~k~~Gl~~~ifAvlTP 189 (216)
+|....-.++....-+++...++ .+.... .-...+|+++||-++++ |...+.+.+.+.|++.+..+...+
T Consensus 40 ~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~ 119 (172)
T PF10740_consen 40 TIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKP 119 (172)
T ss_dssp -EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS-
T ss_pred EEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 56666777777777788775432 122100 01237999999999998 899999999999998776665555
Q ss_pred CCCCC
Q 027977 190 NSADK 194 (216)
Q Consensus 190 tN~~W 194 (216)
...+|
T Consensus 120 ~~~~l 124 (172)
T PF10740_consen 120 DEEDL 124 (172)
T ss_dssp --TTG
T ss_pred CCCch
Confidence 55554
No 10
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=61.73 E-value=28 Score=32.72 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=79.0
Q ss_pred CCCceEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHh---------------cccccc-------hh
Q 027977 89 FGPPALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAM---------------NTKQTN-------LE 145 (216)
Q Consensus 89 yGPpaILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~---------------~~~~~d-------~e 145 (216)
.++.+|||.|| .+|..+.++..|.++=- +-+|+..+. -++++|.-++ ++.++- .+
T Consensus 3 ~~k~avLL~nlG~P~~~e~v~~yL~~~~~-d~~v~~~~~-~~~~~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q~~ 80 (320)
T COG0276 3 MKKTAVLLLNLGGPETLEDVRPYLKNFLS-DRRVIELPR-PLWYPLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQAA 80 (320)
T ss_pred CCceEEEEEecCCCCChHHHHHHHHHHhc-CCCCCCCch-hhhhhhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 57889999999 68899999999987622 223333211 1222222222 211110 00
Q ss_pred hhhccCCCCcEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhhc
Q 027977 146 AVKVAESLPRICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTG 212 (216)
Q Consensus 146 ~~k~~~~~~r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~~ 212 (216)
........+++.++-||.-.+ +.+++..+++.|+..++.-.+-|.-..-+.+.-++++.+-.+...+
T Consensus 81 ~L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~ 149 (320)
T COG0276 81 ALEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRG 149 (320)
T ss_pred HHHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCC
Confidence 000000022778888887755 9999999999999999988999998888998888888877665543
No 11
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=60.70 E-value=36 Score=27.11 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=56.5
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.|+++.+ +..++..+|.-|..-|+ +++.+..-.+.. +++... ++.....-.-+..++|++-+-.++.
T Consensus 18 ~~v~v~~~~~l~~~~~~~lR~~l~~~~~---~~~v~KNtl~~~----Al~~t~--~~~~~~~l~G~~~~~f~~~~~~~~~ 88 (155)
T cd00379 18 KSVVVVDYRGLTVAQLTELRKELRESGA---KLKVGKNTLMRR----ALKGTG--FEELKPLLKGPTALAFTNEDPVEVA 88 (155)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHcCC---EEEEEehHHHHH----HHcCCC--ccchhhhCcCCEEEEEeCCChHHHH
Confidence 45666655 69999999999998877 666665444443 444322 2221112235678889988889999
Q ss_pred HHHHHcccCCCCCccEEEEcc
Q 027977 169 MFIEAFPETGLEPAVFAALVP 189 (216)
Q Consensus 169 ~~I~a~k~~Gl~~~ifAvlTP 189 (216)
+++..+++..-...+++....
T Consensus 89 k~~~~~~k~~~~~~~k~g~~~ 109 (155)
T cd00379 89 KVLKDFAKENKKLFAKGGVVA 109 (155)
T ss_pred HHHHHHHHhCCCceEEEEEEc
Confidence 999999875322334444443
No 12
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=60.66 E-value=12 Score=34.56 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred eEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcC-CCHHH---H
Q 027977 93 ALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSG-LSGEE---M 167 (216)
Q Consensus 93 aILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sG-ft~eE---l 167 (216)
-|||+|-. .-.---+|.++.+++.+.++++.|+++++ -.|.+|++ +.. ...+|||+|++ +|=++ =
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl-~~Lp~l~~--~Lr-------~~~~kFIlFcDDLSFe~gd~~ 156 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL-ATLPDLVE--LLR-------ARPEKFILFCDDLSFEEGDDA 156 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH-hhHHHHHH--HHh-------cCCceEEEEecCCCCCCCchH
Confidence 48999994 66667788999999999999999999995 45667766 222 22688888875 44333 4
Q ss_pred HHHHHHcccCCCC
Q 027977 168 MMFIEAFPETGLE 180 (216)
Q Consensus 168 ~~~I~a~k~~Gl~ 180 (216)
.+.++++=+-|+.
T Consensus 157 yK~LKs~LeG~ve 169 (287)
T COG2607 157 YKALKSALEGGVE 169 (287)
T ss_pred HHHHHHHhcCCcc
Confidence 4455555454555
No 13
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=59.25 E-value=76 Score=25.70 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=57.6
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.|+++.+ +.+++..+|.-|.+.|+ +++.+..-.+... ++.. +++.....-.-+-.++|+.-+-.++.
T Consensus 20 ~~v~v~~~~gl~~~~~~~lR~~lr~~~~---~~~V~KNtL~~~A----l~~t--~~~~l~~~l~G~~al~f~~~d~~~~~ 90 (157)
T cd05797 20 KSVVVADYRGLTVAQLTELRKELREAGV---KLKVVKNTLAKRA----LEGT--GFEDLDDLLKGPTAIAFSEEDPVAAA 90 (157)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHcCC---EEEEehhHHHHHH----HhcC--CchhhHhhCcCCEEEEEeCCChHHHH
Confidence 35666555 69999999999999887 5555554444443 3322 22222111225668888888888899
Q ss_pred HHHHHcccCCCCCccEEEEcc
Q 027977 169 MFIEAFPETGLEPAVFAALVP 189 (216)
Q Consensus 169 ~~I~a~k~~Gl~~~ifAvlTP 189 (216)
.++..+.+..-...+++...+
T Consensus 91 k~l~~f~k~~~~~~~~gg~~e 111 (157)
T cd05797 91 KVLKDFAKENKKLEIKGGVVE 111 (157)
T ss_pred HHHHHHHHhCCCcEEEEEEEC
Confidence 999999775323456666665
No 14
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.96 E-value=58 Score=27.36 Aligned_cols=78 Identities=27% Similarity=0.245 Sum_probs=52.2
Q ss_pred CceEEE--ecCC--hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHH-
Q 027977 91 PPALLL--LGFK--VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGE- 165 (216)
Q Consensus 91 PpaILL--~GF~--~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~e- 165 (216)
+|+||+ .|++ .-...-++.+|.+.|+ .|+...-- ++-.+++.... ...--.+.+|++++.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~Gf---eVi~~g~~---~tp~e~v~aA~---------~~dv~vIgvSsl~g~h 76 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGF---EVINLGLF---QTPEEAVRAAV---------EEDVDVIGVSSLDGGH 76 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCc---eEEecCCc---CCHHHHHHHHH---------hcCCCEEEEEeccchH
Confidence 567776 6776 5566778899999998 76654322 22244444211 123347888888874
Q ss_pred --HHHHHHHHcccCCCCCcc
Q 027977 166 --EMMMFIEAFPETGLEPAV 183 (216)
Q Consensus 166 --El~~~I~a~k~~Gl~~~i 183 (216)
.+..++.++|+.|+..++
T Consensus 77 ~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 77 LTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHHHHHHhCCcceE
Confidence 478899999999998766
No 15
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=55.61 E-value=83 Score=30.00 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=62.6
Q ss_pred ceEEEecCChHHHHHHHHHHHhcC---CcceEEEEeCC--CchhchHHHHhcccc----cchhhhhccCCCCcEEEEcCC
Q 027977 92 PALLLLGFKVEEAVKIRQFLKELD---GEFLEVIFCTE--DMIPRSLWEAMNTKQ----TNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 92 paILL~GF~~EE~~kIR~lL~elg---~e~vkVi~vt~--e~~~~pLGel~~~~~----~d~e~~k~~~~~~r~vi~sGf 162 (216)
-.++|||=. .+|+.+|.... -+.++|+.+++ +|-+.|+..+=.... .-.+.++ ++.-..||=+|=
T Consensus 32 ~~~iLvGd~----~~i~~~L~~~~~~~~~~i~i~~a~~~I~m~d~p~~AvR~k~~sSM~~Ai~lVk--eg~ADa~VSAGn 105 (338)
T COG0416 32 LEIILVGDE----DKIEPLLAKAPKLLRERIEIVHAEEVIEMDDKPSQALRKKKGSSMRVALDLVK--EGKADACVSAGN 105 (338)
T ss_pred cEEEEECCH----HHHHHHHhhccccccccceEEeccccccCCCCHHHHHHcCCCcHHHHHHHHHh--cCcCCEEEecCc
Confidence 467888843 24445554321 33567888776 566667765544222 1122233 235568999999
Q ss_pred CHHHHHHHHHHcccC-CCCCccEEEEccC
Q 027977 163 SGEEMMMFIEAFPET-GLEPAVFAALVPN 190 (216)
Q Consensus 163 t~eEl~~~I~a~k~~-Gl~~~ifAvlTPt 190 (216)
|+.-|-.-...++.. |+.+|.++++.||
T Consensus 106 TGAlma~a~~~lg~i~gI~RPAi~~~~Pt 134 (338)
T COG0416 106 TGALMALALLKLGRIKGIDRPALATLLPT 134 (338)
T ss_pred hHHHHHHHHHHhccCCCCCccceeeeccc
Confidence 999988888888876 9999999999999
No 16
>PRK00915 2-isopropylmalate synthase; Validated
Probab=54.61 E-value=99 Score=30.35 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCCCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEE--eCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 86 DPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIF--CTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 86 d~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~--vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|+..++. +.|+.++..+|-+.|.++|++.+.+=+ ..+.+ ..-+..+.. .....+++.|.-..
T Consensus 14 DG~Q~~g----~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d-~~~v~~i~~-----------~~~~~~i~a~~r~~ 77 (513)
T PRK00915 14 DGEQSPG----ASLTVEEKLQIAKQLERLGVDVIEAGFPASSPGD-FEAVKRIAR-----------TVKNSTVCGLARAV 77 (513)
T ss_pred cCCCCCC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHH-HHHHHHHHh-----------hCCCCEEEEEccCC
Confidence 4555554 478999999999999999995554422 11111 111222211 01235667777666
Q ss_pred HHHHHHHHHHcccCCCCCcc-EEEEccC----CCCCCHHHHHHHHHHHHHHhhcCC
Q 027977 164 GEEMMMFIEAFPETGLEPAV-FAALVPN----SADKPLQELIEEVMGDHEMLTGQQ 214 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~i-fAvlTPt----N~~W~l~eLieEL~~EHe~m~~~~ 214 (216)
.++++..++++++.|.+.+. |..+.+. +.+|+..+.++.+.+==+|.+..+
T Consensus 78 ~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g 133 (513)
T PRK00915 78 KKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYT 133 (513)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 78899999999988876443 3322222 678888998888877766666543
No 17
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=53.89 E-value=45 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.9
Q ss_pred ceEEEecC--ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhc
Q 027977 92 PALLLLGF--KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMN 138 (216)
Q Consensus 92 paILL~GF--~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~ 138 (216)
..++|.|+ +.....+++..|+..|+ .++-..++.+++-+-+.+++.
T Consensus 164 g~l~LsGyC~~s~~~~~Lq~~L~~~gi-~yr~~lvc~D~L~~~V~~IL~ 211 (395)
T PRK15367 164 GSLQLSGYCSSSEQMQKVRATLESWGV-MYRDGVICDDLLIREVQDVLI 211 (395)
T ss_pred CcEEEEEEECChHHHHHHHHHHHhcCc-eeeecceeHHHHHHHHHHHHH
Confidence 45799999 68899999999999998 567778899999999999998
No 18
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.35 E-value=1.2e+02 Score=24.45 Aligned_cols=76 Identities=17% Similarity=0.092 Sum_probs=48.2
Q ss_pred CceEEEe--cCC--hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCH--
Q 027977 91 PPALLLL--GFK--VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSG-- 164 (216)
Q Consensus 91 PpaILL~--GF~--~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~-- 164 (216)
+++|++. |.+ .-..+-+..+|...|. +|+..... .+..++++... .....++.+|+++.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~Gf---eVi~lg~~---~s~e~~v~aa~---------e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGF---DVDVGPLF---QTPEEIARQAV---------EADVHVVGVSSLAGGH 66 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCc---EEEECCCC---CCHHHHHHHHH---------HcCCCEEEEcCchhhh
Confidence 5677774 444 4455667777888777 77755443 33333433111 22456888999875
Q ss_pred -HHHHHHHHHcccCCCCC
Q 027977 165 -EEMMMFIEAFPETGLEP 181 (216)
Q Consensus 165 -eEl~~~I~a~k~~Gl~~ 181 (216)
+.+..+++++|+.|.+.
T Consensus 67 ~~~~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPD 84 (132)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 55888999999988753
No 19
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=52.79 E-value=60 Score=27.58 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHHHhcCCcceEEE-EeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccC
Q 027977 99 FKVEEAVKIRQFLKELDGEFLEVI-FCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 99 F~~EE~~kIR~lL~elg~e~vkVi-~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~ 177 (216)
|+.++..+|-+.|.++|++-+.+= +...+.-...+..+.... . ..++..+.-...+.++..++++++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~----------~-~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL----------P-NARLQALCRANEEDIERAVEAAKEA 79 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH----------H-SSEEEEEEESCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh----------c-ccccceeeeehHHHHHHHHHhhHhc
Confidence 688999999999999999655544 112222222222222200 0 1445555556666677777777777
Q ss_pred CCCCcc-EEEEcc----CCCCCCHHHHHHHHHH
Q 027977 178 GLEPAV-FAALVP----NSADKPLQELIEEVMG 205 (216)
Q Consensus 178 Gl~~~i-fAvlTP----tN~~W~l~eLieEL~~ 205 (216)
|+..+. +..+.+ .|..|+..+.++.+.+
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~ 112 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEE 112 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHH
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHH
Confidence 766443 333333 4556666666665543
No 20
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=52.62 E-value=1e+02 Score=26.70 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=52.8
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCch-------------hchHHHHhcccccchhhhhccCCCCc
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMI-------------PRSLWEAMNTKQTNLEAVKVAESLPR 155 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~-------------~~pLGel~~~~~~d~e~~k~~~~~~r 155 (216)
+-+|++|- ++|.++.+.++.....+ ++++..+++- ..-+...+ ..++|.+-. |.+.-.
T Consensus 37 rPLlivGp~~~dee~~E~~vKi~ekfni---pivaTa~~~~~~~~~~i~~~~~~lh~it~~l--~Dp~w~G~d-g~g~yD 110 (170)
T COG1880 37 RPLLIVGPLALDEELLELAVKIIEKFNI---PIVATASSMGNLIGRGIGSEYINLHAITQYL--TDPNWPGFD-GNGNYD 110 (170)
T ss_pred CceEEecccccCHHHHHHHHHHHHhcCC---ceEecchhhcchhhcccccchhHHHHHHHHh--cCCCCCCcC-CCCCcc
Confidence 45677776 46667777777776655 7776665554 11222222 245666442 344677
Q ss_pred EEEEcCCCHHHHHHHHHHcccC
Q 027977 156 ICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 156 ~vi~sGft~eEl~~~I~a~k~~ 177 (216)
.|||-|+.--=+.+++.++|--
T Consensus 111 lviflG~~~yy~sq~Ls~lKhF 132 (170)
T COG1880 111 LVIFLGSIYYYLSQVLSGLKHF 132 (170)
T ss_pred eEEEEeccHHHHHHHHHHhhhh
Confidence 9999999999999999999863
No 21
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=51.69 E-value=43 Score=27.40 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred eEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc-----cccchhhh-----------------hc
Q 027977 93 ALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT-----KQTNLEAV-----------------KV 149 (216)
Q Consensus 93 aILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~-----~~~d~e~~-----------------k~ 149 (216)
+|||.|+ .++....++..|.++=.+ -+|+.++.-. ...|.-++-. ....|... +.
T Consensus 2 ~VLL~n~G~P~~~~~v~~yL~~~~~d-~~vi~~p~~~-~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l~~ 79 (159)
T cd03411 2 AVLLVNLGGPESLEDVRPFLKNFLSD-RRVIELPRPL-RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEALEK 79 (159)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHcCC-CCcccCCHHH-HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 6899999 577788888888876332 2344333221 2222222110 00111111 00
Q ss_pred --cCCCCcEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHH
Q 027977 150 --AESLPRICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGD 206 (216)
Q Consensus 150 --~~~~~r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~E 206 (216)
.....++.+.-||.-.+ +.+.|+.+++.|+..++.--+-|....-+.+..++++.+.
T Consensus 80 ~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~ 140 (159)
T cd03411 80 ALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERA 140 (159)
T ss_pred HHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHH
Confidence 00112477777777766 9999999999999999999999999999999998888654
No 22
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.81 E-value=1.2e+02 Score=22.70 Aligned_cols=72 Identities=13% Similarity=0.250 Sum_probs=46.2
Q ss_pred eEEEecCChHHHHHHHHHHHhcCCcceEEEEe--CCCchhch--HHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 93 ALLLLGFKVEEAVKIRQFLKELDGEFLEVIFC--TEDMIPRS--LWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 93 aILL~GF~~EE~~kIR~lL~elg~e~vkVi~v--t~e~~~~p--LGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+||++|=.......+++++.+.|+ +.+.. +...-... +...+ ...+=+|++.++-+=.++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~---~~~~hg~~~~~~~~~~~l~~~i-------------~~aD~VIv~t~~vsH~~~ 64 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGG---KLIHHGRDGGDEKKASRLPSKI-------------KKADLVIVFTDYVSHNAM 64 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCC---EEEEEecCCCCccchhHHHHhc-------------CCCCEEEEEeCCcChHHH
Confidence 489999989999999999999999 54455 22211111 22111 124567888888876655
Q ss_pred HHH-HHcccCCCC
Q 027977 169 MFI-EAFPETGLE 180 (216)
Q Consensus 169 ~~I-~a~k~~Gl~ 180 (216)
..+ +..|+.|.|
T Consensus 65 ~~vk~~akk~~ip 77 (97)
T PF10087_consen 65 WKVKKAAKKYGIP 77 (97)
T ss_pred HHHHHHHHHcCCc
Confidence 444 455676763
No 23
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=47.52 E-value=30 Score=28.06 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=58.6
Q ss_pred ceEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC-HHHHHH
Q 027977 92 PALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS-GEEMMM 169 (216)
Q Consensus 92 paILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft-~eEl~~ 169 (216)
-++|++=| +.|-+-|...+|.+.|+..+=++.+ -+.+-.+| .||+ .|+-.+
T Consensus 3 mKvl~klFVe~eNlGKaINaLte~GITGFyl~eY------------kGmSP~~w---------------kgf~l~EDpe~ 55 (110)
T PF10126_consen 3 MKVLLKLFVESENLGKAINALTEGGITGFYLHEY------------KGMSPQDW---------------KGFLLDEDPEM 55 (110)
T ss_pred cEEEEEEEEehhHHHHHHHHHHhcCccEEEeEee------------cCCChHHh---------------cCcccccCHHH
Confidence 46888888 7899999999999999876633321 01111122 3553 356888
Q ss_pred HHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHH
Q 027977 170 FIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGD 206 (216)
Q Consensus 170 ~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~E 206 (216)
.++++++..-+-++..+++..+.--++.++++|=.++
T Consensus 56 ai~~I~d~s~~aV~I~TVV~~~~~~~i~~~i~ekL~~ 92 (110)
T PF10126_consen 56 AIKAINDLSENAVLIGTVVDEEKVEKIEKLIKEKLKN 92 (110)
T ss_pred HHHHHHHhccCcEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 8999988776667777777776666666666654443
No 24
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=45.85 E-value=2e+02 Score=24.84 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|..+|.+++- ..+..+.+++.+.+.|++.+....++. .++...+..+.. . ....||+.+ +
T Consensus 135 g~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~------------~-~~dav~~~~-~ 200 (336)
T cd06326 135 GLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA------------A-RPQAVIMVG-A 200 (336)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh------------c-CCCEEEEEc-C
Confidence 4555555432 356777788888888886554444443 333333443332 0 134555555 3
Q ss_pred HHHHHHHHHHcccCCCCCcc
Q 027977 164 GEEMMMFIEAFPETGLEPAV 183 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~i 183 (216)
......+++++++.|+...+
T Consensus 201 ~~~a~~~i~~~~~~G~~~~~ 220 (336)
T cd06326 201 YKAAAAFIRALRKAGGGAQF 220 (336)
T ss_pred cHHHHHHHHHHHhcCCCCcE
Confidence 34577888888888886554
No 25
>PRK14847 hypothetical protein; Provisional
Probab=45.23 E-value=2e+02 Score=27.16 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=67.7
Q ss_pred ecCChHHHHHHHHHHHhcCCcceEEE-EeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcc
Q 027977 97 LGFKVEEAVKIRQFLKELDGEFLEVI-FCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFP 175 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~elg~e~vkVi-~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k 175 (216)
+.|+.+|..+|-++|.++|++.+.+= ++..+.-...+..++.... . ...-+++.++-...+.|+..+.+.+
T Consensus 49 v~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~--~------~~~~~i~~~~r~~~~dId~a~e~~~ 120 (333)
T PRK14847 49 EPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERR--I------PDDVTIEALTQSRPDLIARTFEALA 120 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCC--C------CCCcEEEEEecCcHHHHHHHHHHhC
Confidence 46899999999999999999666552 3333443455555554110 0 0135688888888999999999988
Q ss_pred cCCCCCccEEEEccCC-------CCCCHHHHHHHHHHHHHHh
Q 027977 176 ETGLEPAVFAALVPNS-------ADKPLQELIEEVMGDHEML 210 (216)
Q Consensus 176 ~~Gl~~~ifAvlTPtN-------~~W~l~eLieEL~~EHe~m 210 (216)
..+... .-...|+| ..|+-.++++-+.+==+|.
T Consensus 121 ~~~~~~--Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~A 160 (333)
T PRK14847 121 GSPRAI--VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQI 160 (333)
T ss_pred CCCCCE--EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 765443 44445554 6777777776555433333
No 26
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=45.22 E-value=1.9e+02 Score=28.39 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=63.5
Q ss_pred ecCChHHHHHHHHHHHhcCCcceEEEEe-C-CCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHc
Q 027977 97 LGFKVEEAVKIRQFLKELDGEFLEVIFC-T-EDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAF 174 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~elg~e~vkVi~v-t-~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~ 174 (216)
+.|+.++..+|-+.|.++|++.+.+=+. . +.+. .-+..++. .....+++.|.-...+.++..++++
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~-e~v~~i~~-----------~~~~~~i~al~r~~~~did~a~~al 85 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAGFPVSSPGDF-EAVQRIAR-----------TVKNPRVCGLARCVEKDIDAAAEAL 85 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH-HHHHHHHH-----------hCCCCEEEEEcCCCHHhHHHHHHhc
Confidence 4689999999999999999965544221 1 2121 12222221 0113456777666677899998888
Q ss_pred ccCCCCCccEEEEc-----cCCCCCCHHHHHHHHHHHHHHhhc
Q 027977 175 PETGLEPAVFAALV-----PNSADKPLQELIEEVMGDHEMLTG 212 (216)
Q Consensus 175 k~~Gl~~~ifAvlT-----PtN~~W~l~eLieEL~~EHe~m~~ 212 (216)
+..+.+.+..-.-| ..+.+|+..+.++.+.+==+|.+.
T Consensus 86 ~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~ 128 (494)
T TIGR00973 86 KPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKN 128 (494)
T ss_pred cccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 87766544322222 346788888888766655445443
No 27
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=43.85 E-value=1.1e+02 Score=28.40 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.|+++++ +...+..||+-|..- + +++....-++..-|+...+. .++++.....-.-+--++|+.-+-.++.
T Consensus 25 ~~v~vv~~~nv~s~ql~~iR~~LR~~-a---~~~vgKNTL~r~AL~~~~~~-~~~l~~L~~~LkG~~gliFTn~dp~ev~ 99 (310)
T PTZ00135 25 KKILIVSVDNVGSKQMQDIRRSLRGK-A---ELLMGKNTLIRKALKQRLEE-LPELEKLLPHVKGNVGFVFTKDDLFEVK 99 (310)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhcC-C---EEEEEehHHHHHHHhhCccc-ccChHHHHhhccCCEEEEEECCCHHHHH
Confidence 46777777 589999999999863 3 56667777777767655332 1233332211224567889999999999
Q ss_pred HHHHHcccC
Q 027977 169 MFIEAFPET 177 (216)
Q Consensus 169 ~~I~a~k~~ 177 (216)
+++..++..
T Consensus 100 k~l~~~k~~ 108 (310)
T PTZ00135 100 PVILENKVP 108 (310)
T ss_pred HHHHHcCCc
Confidence 999999874
No 28
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=43.71 E-value=1.5e+02 Score=29.40 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=65.1
Q ss_pred ecCChHHHHHHHHHHHhcCCcceEEEEe-CCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcc
Q 027977 97 LGFKVEEAVKIRQFLKELDGEFLEVIFC-TEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFP 175 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~elg~e~vkVi~v-t~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k 175 (216)
..|+.++..+|-+.|.++|++.+.+=+. ........+..+......... . .-....+++-++-...+.++..+++.+
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~-~-~~~l~~~i~a~~R~~~~dId~a~~a~~ 178 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVD-E-ETGYVPVICGIARCKKRDIEAAWEALK 178 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccc-c-ccccceEEeeecccCHhhHHHHHHhhc
Confidence 3789999999999999999965554321 111112224444321000000 0 000124555666667778888888887
Q ss_pred cCCCCCcc-EEEEc----cCCCCCCHHHHHHHHHHHHHHhhc
Q 027977 176 ETGLEPAV-FAALV----PNSADKPLQELIEEVMGDHEMLTG 212 (216)
Q Consensus 176 ~~Gl~~~i-fAvlT----PtN~~W~l~eLieEL~~EHe~m~~ 212 (216)
..|.+.+. +..+. ..+.+|+..+.++.+.+==+|.+.
T Consensus 179 ~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~ 220 (503)
T PLN03228 179 YAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKS 220 (503)
T ss_pred ccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 77766553 33332 345677888888777665555554
No 29
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=43.39 E-value=72 Score=26.06 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=46.0
Q ss_pred ceEEEecC--ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 92 PALLLLGF--KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 92 paILL~GF--~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
-.+++|.- +.+++++|+++...... +++..+...++.++ ......+.+-|+..+...|..
T Consensus 51 aV~i~Y~p~~~~~~v~~L~~l~~~~~~---~~visP~~~~~~pi---------------altaWg~~l~~~~~d~~~i~~ 112 (130)
T PF11303_consen 51 AVWITYDPCLPPDQVAKLKALAKSCLP---YVVISPYPGLDRPI---------------ALTAWGRQLKLDSADDPRIKQ 112 (130)
T ss_pred cEEEEECCCCCHHHHHHHHHHHhccCC---cEEEecCCCCCCCE---------------EEeecCCEeecCcCCHHHHHH
Confidence 36778877 59999999999997444 44444322211111 112257889999999999999
Q ss_pred HHHHccc
Q 027977 170 FIEAFPE 176 (216)
Q Consensus 170 ~I~a~k~ 176 (216)
||+++.+
T Consensus 113 Fi~~~~~ 119 (130)
T PF11303_consen 113 FIRKYLQ 119 (130)
T ss_pred HHHHHhc
Confidence 9999954
No 30
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=42.54 E-value=51 Score=25.38 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHH----HcccCCCC
Q 027977 105 VKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIE----AFPETGLE 180 (216)
Q Consensus 105 ~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~----a~k~~Gl~ 180 (216)
+.+-++|.+.+++++.|+-+++.+ .-.+=|||-+|.+...++.+.. .+|+.|.+
T Consensus 3 ~~i~~~l~~kka~dI~vldv~~~~----------------------~~~dy~VI~Tg~S~rh~~aia~~v~~~~k~~~~~ 60 (99)
T TIGR00090 3 ELIVEALDDKKAEDIVVLDVRGKS----------------------SIADYFVIASGTSSRHVKAIADNVEEELKEAGLK 60 (99)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCC----------------------cccCEEEEEEeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 456678899999999888664322 1145699999999999876655 44555654
Q ss_pred CccEEEEccCCCCCCHHH
Q 027977 181 PAVFAALVPNSADKPLQE 198 (216)
Q Consensus 181 ~~ifAvlTPtN~~W~l~e 198 (216)
+. .+---.+.+|.+-|
T Consensus 61 ~~--~~EG~~~~~WillD 76 (99)
T TIGR00090 61 PL--GVEGLEEGDWVLVD 76 (99)
T ss_pred cc--cccCCCCCCEEEEE
Confidence 32 22222566776644
No 31
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=42.54 E-value=1.5e+02 Score=22.39 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=55.0
Q ss_pred eEEEecC-C--h---HHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccc-cchhhhhccCCCCcEEEEcCCCHH
Q 027977 93 ALLLLGF-K--V---EEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQ-TNLEAVKVAESLPRICFLSGLSGE 165 (216)
Q Consensus 93 aILL~GF-~--~---EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~-~d~e~~k~~~~~~r~vi~sGft~e 165 (216)
++||+|. + . +++.++.+.|.+-.. +.+|..+--+...-.+.+++..-. .+++.+ -.-+++++.|.--+
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~-~~~v~~afle~~~P~~~~~l~~l~~~g~~~i----~vvP~fL~~G~h~~ 76 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTG-FARVETAFAAATRPSLPEALERLRALGARRV----VVLPYLLFTGVLMD 76 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCCHHHHHHHHHHcCCCEE----EEEechhcCCchHH
Confidence 5788888 2 2 455555555543221 123433332332334444444211 111111 13466778888777
Q ss_pred HHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHH
Q 027977 166 EMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMG 205 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~ 205 (216)
+|...++.+++. +..-+.++.|=..+=.+.+++.+-.+
T Consensus 77 ~i~~~~~~~~~~--~~~~i~~~~pLG~~~~l~~~l~~r~~ 114 (117)
T cd03414 77 RIEEQVAELAAE--PGIEFVLAPPLGPHPELAEALLERVR 114 (117)
T ss_pred HHHHHHHHHHhC--CCceEEECCCCCCCHHHHHHHHHHHH
Confidence 888888888764 44445555565555556666655444
No 32
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=41.87 E-value=1.9e+02 Score=24.31 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=52.4
Q ss_pred eEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 93 ALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 93 aILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
.++++.+ +...+.+||+-|.+- + +++.+..-.+..-|+..-+ ..++++.....-.-+-.++|+.-+-.++.+
T Consensus 19 ~v~v~~~~gl~~~ql~~lR~~lr~~-~---~~~v~KNtL~~~Al~~~~~-~~~~~~~L~~~l~G~~~liFt~~dp~~v~k 93 (175)
T cd05795 19 KVLIVDADNVGSKQLQKIRRSLRGK-A---EILMGKNTLIRRALRNLGD-ENPELEKLLPYLKGNVGFIFTNGDPFEIRK 93 (175)
T ss_pred EEEEEEecCCChHHHHHHHHHhhCC-C---EEEEechHHHHHHHHhccc-ccccHHHHHHHhcCCEEEEEECCCHHHHHH
Confidence 5666654 699999999999863 4 6666666666655555421 112233221122246688999999999999
Q ss_pred HHHHcccC
Q 027977 170 FIEAFPET 177 (216)
Q Consensus 170 ~I~a~k~~ 177 (216)
++..++..
T Consensus 94 ~l~~~~~~ 101 (175)
T cd05795 94 ILEENKVP 101 (175)
T ss_pred HHHHcCCc
Confidence 99999864
No 33
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=40.89 E-value=59 Score=25.13 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhhcCC
Q 027977 164 GEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTGQQ 214 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~~~~ 214 (216)
.+-+.++++.+++.|++--+-++ -|+.+=.+.+|++=+.+-|+++...+
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm--~T~IEGe~dev~~~i~~~~e~~~~~G 66 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPM--GTLIEGDLDELFEAIKAIHEAVLEKG 66 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCC--ccEEecCHHHHHHHHHHHHHHHHHcC
Confidence 45688899999988986433222 23334457899999999999988764
No 34
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=40.84 E-value=46 Score=30.27 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=61.2
Q ss_pred CceEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcC-CCHHH--
Q 027977 91 PPALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSG-LSGEE-- 166 (216)
Q Consensus 91 PpaILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sG-ft~eE-- 166 (216)
.--|||+|-. .-+---+|.+|.+..-+.+|++.|+++++. .|.+|+.. .. ....+||||.+ ++=++
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~-~l~~l~~~----l~-----~~~~kFIlf~DDLsFe~~d 121 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG-DLPELLDL----LR-----DRPYKFILFCDDLSFEEGD 121 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc-cHHHHHHH----Hh-----cCCCCEEEEecCCCCCCCc
Confidence 3458999995 677888999999887778899999998843 34445441 11 22567777764 33222
Q ss_pred -HHHHHHHcccCCCC-Cc--cEEEEccCCCCCCHHHHHHHHHHHHH
Q 027977 167 -MMMFIEAFPETGLE-PA--VFAALVPNSADKPLQELIEEVMGDHE 208 (216)
Q Consensus 167 -l~~~I~a~k~~Gl~-~~--ifAvlTPtN~~W~l~eLieEL~~EHe 208 (216)
=...++++=+-|+. ++ +.-.+|- +=..|+.|-+.|.+
T Consensus 122 ~~yk~LKs~LeGgle~~P~NvliyATS-----NRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 122 TEYKALKSVLEGGLEARPDNVLIYATS-----NRRHLVPESFSDRE 162 (249)
T ss_pred HHHHHHHHHhcCccccCCCcEEEEEec-----chhhccchhhhhcc
Confidence 33444444444554 22 2222222 34566666666653
No 35
>COG1647 Esterase/lipase [General function prediction only]
Probab=39.99 E-value=2.1e+02 Score=26.23 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCceEEE-ecC--ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHH-HHhcccccchh-hhhcc-----CCCCcEEEE
Q 027977 90 GPPALLL-LGF--KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLW-EAMNTKQTNLE-AVKVA-----ESLPRICFL 159 (216)
Q Consensus 90 GPpaILL-~GF--~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLG-el~~~~~~d~e-~~k~~-----~~~~r~vi~ 159 (216)
|..+||| =|| +..+++-+-+.|.+.|. .+ .++..---.... +++.+.-.||- .+..+ ...-.=|-.
T Consensus 14 G~~AVLllHGFTGt~~Dvr~Lgr~L~e~Gy---Tv-~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v 89 (243)
T COG1647 14 GNRAVLLLHGFTGTPRDVRMLGRYLNENGY---TV-YAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAV 89 (243)
T ss_pred CCEEEEEEeccCCCcHHHHHHHHHHHHCCc---eE-ecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4567666 589 59999999999999875 22 455555555555 45554333332 12110 112334667
Q ss_pred cCCCHHHHHHHHHHcccCCCCCccEEEEccCC-CCCCH
Q 027977 160 SGLSGEEMMMFIEAFPETGLEPAVFAALVPNS-ADKPL 196 (216)
Q Consensus 160 sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN-~~W~l 196 (216)
.|++-.-+..+.-+..-. +.-|+.+.+|.| .+|..
T Consensus 90 ~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~ 125 (243)
T COG1647 90 VGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRI 125 (243)
T ss_pred EeecchhHHHHHHHhhCC--ccceeeecCCcccccchh
Confidence 899999888887776653 355788888998 77753
No 36
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=37.98 E-value=41 Score=27.08 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=57.1
Q ss_pred eEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHH-HHHH
Q 027977 93 ALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEE-MMMF 170 (216)
Q Consensus 93 aILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eE-l~~~ 170 (216)
+++|+=| +.|.+-|...++.+-|+..+=+. +|.++ .+++ +.||+-+| ....
T Consensus 4 kv~l~lFVe~eNvGkaiN~mad~GiTGFfl~--------------------eYrGv----sPd~---wkgf~~~EDpE~a 56 (110)
T COG4075 4 KVLLRLFVEEENVGKAINIMADAGITGFFLH--------------------EYRGV----SPDK---WKGFSKEEDPESA 56 (110)
T ss_pred eEeEEEEecHHHHHHHHHHHHhcCcceEEEE--------------------EecCc----ChhH---hcCcccccCHHHH
Confidence 6788888 78889999999998888644221 12211 0111 24666654 7888
Q ss_pred HHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHH
Q 027977 171 IEAFPETGLEPAVFAALVPNSADKPLQELIEEVMG 205 (216)
Q Consensus 171 I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~ 205 (216)
+++++...-.-++..++++.+.--++.+|+.|=..
T Consensus 57 ik~i~D~s~~AVlI~tVV~Ee~vekie~~~~Ekla 91 (110)
T COG4075 57 IKAIRDLSDKAVLIGTVVKEEKVEKIEELLKEKLA 91 (110)
T ss_pred HHHHHHhhhceEEEEEecCHHHHHHHHHHHHHHhc
Confidence 88888776556677888888877777777766443
No 37
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=37.06 E-value=3.5e+02 Score=25.12 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred eEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 93 ALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 93 aILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
.|+++++ +...++.||+-|.+- + +++.+..-.+..-|+..-. ++++.....-.-+..++|++-+-.++.+
T Consensus 24 ~v~iv~~~gl~~~ql~~lR~~lr~~-~---~~~v~KNtL~~~Al~~~~~---~~~~~L~~~l~G~~alift~~dp~~v~k 96 (330)
T PRK04019 24 VVGIVDLEGIPARQLQEIRRKLRGK-A---ELKVSKNTLIKRALEEAGE---EDLEKLEDYLEGQVALIFTNMNPFKLYK 96 (330)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHcC-C---EEEEEehHHHHHHHHhcCc---ccHHHHHhhccCCEEEEEECCCHHHHHH
Confidence 5666666 699999999999863 4 5666666665555554321 3333322223356789999999999999
Q ss_pred HHHHcccC
Q 027977 170 FIEAFPET 177 (216)
Q Consensus 170 ~I~a~k~~ 177 (216)
++..++..
T Consensus 97 ~l~~~~~~ 104 (330)
T PRK04019 97 LLEKSKTP 104 (330)
T ss_pred HHHHcCCc
Confidence 99999864
No 38
>PRK11538 ribosome-associated protein; Provisional
Probab=35.29 E-value=1.9e+02 Score=22.72 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHH----HHcccCC
Q 027977 103 EAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFI----EAFPETG 178 (216)
Q Consensus 103 E~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I----~a~k~~G 178 (216)
-++.+-++|.+.+++++.|+-+++.+ .-.+-|||-+|.+...+..+. +.+|+.|
T Consensus 6 ~~~~i~~~l~dkKa~DI~vlDv~~~~----------------------~~~Dy~VIatg~S~rh~~aia~~v~~~~k~~~ 63 (105)
T PRK11538 6 LQDFVIDKIDDLKGQDIIALDVQGKS----------------------SITDCMIICTGTSSRHVMSIADHVVQESRAAG 63 (105)
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCC----------------------cccCEEEEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 35557889999999988877553221 125679999999999988654 4555666
Q ss_pred CCCccEEEEccCCCCCCHHHH
Q 027977 179 LEPAVFAALVPNSADKPLQEL 199 (216)
Q Consensus 179 l~~~ifAvlTPtN~~W~l~eL 199 (216)
+.+. .+-=..+.+|.+.|+
T Consensus 64 ~~~~--~~eG~~~~~WillD~ 82 (105)
T PRK11538 64 LLPL--GVEGENAADWIVVDL 82 (105)
T ss_pred CCCC--cccCCCCCCEEEEeC
Confidence 6432 222234567876553
No 39
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=35.05 E-value=2.8e+02 Score=23.84 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCCCCCceEEEecCC------hHHHHHHHHHHHhcC---CcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcE
Q 027977 86 DPTFGPPALLLLGFK------VEEAVKIRQFLKELD---GEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRI 156 (216)
Q Consensus 86 d~~yGPpaILL~GF~------~EE~~kIR~lL~elg---~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~ 156 (216)
.+.=|.+.|+.+||. .-++..++.+++.++ ...|++++|+=+=-.-+ -+.+. .|.. .....++
T Consensus 63 ~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-p~~lk----~Y~~---~~~~~~~ 134 (207)
T COG1999 63 KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-PEVLK----KYAE---LNFDPRW 134 (207)
T ss_pred cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-HHHHH----HHhc---ccCCCCe
Confidence 334899999999994 677777887877777 55777777753322222 12222 1111 1236678
Q ss_pred EEEcCCCHHHHHHHHHHccc
Q 027977 157 CFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 157 vi~sGft~eEl~~~I~a~k~ 176 (216)
+.++|- -+++.++.++++-
T Consensus 135 ~~ltg~-~~~~~~~~k~~~V 153 (207)
T COG1999 135 IGLTGT-PEQIEEVAKAYGV 153 (207)
T ss_pred eeeeCC-HHHHHHHHHHhcc
Confidence 888887 7778888888764
No 40
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=33.57 E-value=1.5e+02 Score=24.06 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=55.3
Q ss_pred ceEEEec----CChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC--H-
Q 027977 92 PALLLLG----FKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS--G- 164 (216)
Q Consensus 92 paILL~G----F~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft--~- 164 (216)
..|.+.| +..+ +..+-+.+.+.|. ++...|.-.....+..++.....++-........+..--+.|.. .
T Consensus 64 ~~i~~sGGEPll~~~-l~~li~~~~~~g~---~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~ 139 (191)
T TIGR02495 64 DGVVITGGEPTLQAG-LPDFLRKVRELGF---EVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGS 139 (191)
T ss_pred CeEEEECCcccCcHh-HHHHHHHHHHCCC---eEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchH
Confidence 4566666 2333 6566666677775 56566666554444444431101111000000111111122322 2
Q ss_pred HHHHHHHHHcccCCCCCccEEEEccCCCCC-CHHHHHHH
Q 027977 165 EEMMMFIEAFPETGLEPAVFAALVPNSADK-PLQELIEE 202 (216)
Q Consensus 165 eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W-~l~eLieE 202 (216)
+++.+.++.+++.|++..+--+++|.|.+. .+.++.+.
T Consensus 140 ~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~ 178 (191)
T TIGR02495 140 NNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATR 178 (191)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHH
Confidence 378888899999998766777888888774 24444443
No 41
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=32.93 E-value=2.4e+02 Score=26.60 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=71.6
Q ss_pred CccccCCCCCCCCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc------cc---cchhhh
Q 027977 77 SKFVPLNADDPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT------KQ---TNLEAV 147 (216)
Q Consensus 77 ~~f~~~~~dd~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~------~~---~d~e~~ 147 (216)
-+|..-...+|+--|-. .-|+..+.+..+++.+.+.|+.++- +-+-...+..+.+- .- .+..=.
T Consensus 146 ~~~~r~~~~kpRtsp~~--f~g~~~e~l~~L~~~~~~~Gl~~~t-----~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL 218 (360)
T PRK12595 146 LKLLRGGAFKPRTSPYD--FQGLGVEGLKILKQVADEYGLAVIS-----EIVNPADVEVALDYVDVIQIGARNMQNFELL 218 (360)
T ss_pred CcEEEccccCCCCCCcc--ccCCCHHHHHHHHHHHHHcCCCEEE-----eeCCHHHHHHHHHhCCeEEECcccccCHHHH
Confidence 35555555555544421 3455789999999999999995552 22222333333221 00 011111
Q ss_pred h-ccCCCCcEEEEcCC--CHHHHHHHHHHcccCCCCCccE---EEE-----ccCCCCCCHHHHHHHH
Q 027977 148 K-VAESLPRICFLSGL--SGEEMMMFIEAFPETGLEPAVF---AAL-----VPNSADKPLQELIEEV 203 (216)
Q Consensus 148 k-~~~~~~r~vi~sGf--t~eEl~~~I~a~k~~Gl~~~if---Avl-----TPtN~~W~l~eLieEL 203 (216)
+ .+..-.++++=.|+ |-+|+...+..+.+.|-+.++. .+. ++++.+|..-..+.+.
T Consensus 219 ~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~ 285 (360)
T PRK12595 219 KAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQE 285 (360)
T ss_pred HHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH
Confidence 1 13335678888897 8899999999999998865543 233 3566777777666664
No 42
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=32.77 E-value=1.6e+02 Score=27.09 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=74.9
Q ss_pred CceEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhccc-c----cchhhhhcc--------------
Q 027977 91 PPALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTK-Q----TNLEAVKVA-------------- 150 (216)
Q Consensus 91 PpaILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~-~----~d~e~~k~~-------------- 150 (216)
+-+|||.++ .++....++..|.++=. +=+|+.++......++..++... . ..|....++
T Consensus 5 k~~VlL~n~G~P~~~~~v~~yL~~~~~-D~~vi~~p~~~~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q~~~l 83 (322)
T TIGR00109 5 KTGVLLMNLGGPDKLEEVERFLKQLFA-DPRIIDISRAKWRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQAHAL 83 (322)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHcC-CcchhcCCccccccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 358999999 57778888888876532 12566666555555555544311 1 012211000
Q ss_pred -CCCC---cEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHH
Q 027977 151 -ESLP---RICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDH 207 (216)
Q Consensus 151 -~~~~---r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EH 207 (216)
...+ ++-+.-||.-.+ +.+.|+.+++.|+..++.--+-|....-+.+..++++.++=
T Consensus 84 ~~~l~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l 146 (322)
T TIGR00109 84 EKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEAL 146 (322)
T ss_pred HHHhccCCCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHH
Confidence 0011 466777776554 99999999999999999989999887787777777766553
No 43
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=32.50 E-value=3.2e+02 Score=24.38 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCCC
Q 027977 100 KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 100 ~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~Gl 179 (216)
.....+.+++.+.+.|++.+.+..++......-...++.. .. . ..+++|+.+. .++...+++.+++.|+
T Consensus 151 g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~----i~-----~-~~~vii~~~~-~~~~~~~l~q~~~~g~ 219 (389)
T cd06352 151 CFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQD----IK-----R-RSRIIIMCGS-SEDVRELLLAAHDLGL 219 (389)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHH----hh-----h-cceEEEEECC-HHHHHHHHHHHHHcCC
Confidence 4556777888888888855544444432101112222220 01 1 1267777665 5789999999999998
Q ss_pred C
Q 027977 180 E 180 (216)
Q Consensus 180 ~ 180 (216)
.
T Consensus 220 ~ 220 (389)
T cd06352 220 T 220 (389)
T ss_pred C
Confidence 5
No 44
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=32.18 E-value=66 Score=25.50 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhhcCC
Q 027977 164 GEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTGQQ 214 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~~~~ 214 (216)
.+-++++++.+|+.|++-.+-++= |..+-++.||++=|.+=||++...+
T Consensus 20 s~yVa~~i~~lk~~glky~~~pm~--T~iEg~~del~~~ik~~~Ea~~~~g 68 (100)
T COG0011 20 SKYVAEAIEILKESGLKYQLGPMG--TVIEGELDELMEAVKEAHEAVFEKG 68 (100)
T ss_pred HHHHHHHHHHHHHcCCceeecCcc--eEEEecHHHHHHHHHHHHHHHHhcC
Confidence 456889999999998875443332 3334478899999999999977654
No 45
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=32.14 E-value=1.2e+02 Score=19.68 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=33.3
Q ss_pred EEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHH
Q 027977 94 LLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFI 171 (216)
Q Consensus 94 ILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I 171 (216)
|.+|+.+ =.-=.+++..|.+.|+++..+ .++++ .....++... .+...++.-....+ ++.|++.++|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~v-di~~~--~~~~~~~~~~--~~~~~vP~~~~~~~--~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEI-DVEKD--SAAREEVLKV--LGQRGVPVIVIGHK--IIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEE-eccCC--HHHHHHHHHH--hCCCcccEEEECCE--EEeeCCHHHHHHHh
Confidence 4455553 333446677888888754432 33332 2222222221 11111111001122 28889888888776
No 46
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=32.08 E-value=60 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.2
Q ss_pred CceEEEecCChHHHHHHHHHHHhcC
Q 027977 91 PPALLLLGFKVEEAVKIRQFLKELD 115 (216)
Q Consensus 91 PpaILL~GF~~EE~~kIR~lL~elg 115 (216)
|..|.+.||+.+....++.-+.+.|
T Consensus 1 ~~wI~V~Gf~~~~~~~vl~~F~~fG 25 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVLEHFASFG 25 (53)
T ss_pred CcEEEEEeECchHHHHHHHHHHhcC
Confidence 4578999999999999999999876
No 47
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.74 E-value=3.3e+02 Score=23.33 Aligned_cols=84 Identities=12% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeCCC--chhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCTED--MIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt~e--~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
.|..+|.+++- ..+..+.+++.+.+.|++.+....++.. ++...+..+.. . ....|++.+.
T Consensus 131 ~g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~------------~-~pdaIi~~~~ 197 (312)
T cd06333 131 RGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRA------------A-RPDAVLIWGS 197 (312)
T ss_pred cCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHh------------C-CCCEEEEecC
Confidence 36667766543 2467778888999988854332222211 22222221111 1 1344555443
Q ss_pred CHHHHHHHHHHcccCCCCCccEEE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVFAA 186 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ifAv 186 (216)
......+++++++.|+..++++.
T Consensus 198 -~~~~~~~~~~l~~~g~~~p~~~~ 220 (312)
T cd06333 198 -GTPAALPAKNLRERGYKGPIYQT 220 (312)
T ss_pred -CcHHHHHHHHHHHcCCCCCEEee
Confidence 33345588888888887666644
No 48
>PLN02449 ferrochelatase
Probab=31.72 E-value=4.9e+02 Score=25.91 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=68.6
Q ss_pred CceEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCc--hhchHHHHhc-----ccccchhhhhc-------------
Q 027977 91 PPALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDM--IPRSLWEAMN-----TKQTNLEAVKV------------- 149 (216)
Q Consensus 91 PpaILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~--~~~pLGel~~-----~~~~d~e~~k~------------- 149 (216)
+-+|||.|+ .++....++.+|.++=.+ =+|+.++.-- ....|.-++- +....|....+
T Consensus 89 k~gVLLlNlGgPes~~dV~pFL~nlfsD-~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~~Qa~ 167 (485)
T PLN02449 89 KVGVLLLNLGGPETLDDVQPFLYNLFAD-PDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDEQAE 167 (485)
T ss_pred ceEEEEEeCCCCCChhHHHHHHHHhcCC-CCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 359999999 688888899999876221 1455444211 1122211111 01111211100
Q ss_pred ------cCCCCcEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHH
Q 027977 150 ------AESLPRICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVM 204 (216)
Q Consensus 150 ------~~~~~r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~ 204 (216)
.....++-+.-||.--. +.+.|+.+++.|+..++.--+-|.....+.+-.++.+.
T Consensus 168 ~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~ 230 (485)
T PLN02449 168 ALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLE 230 (485)
T ss_pred HHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHH
Confidence 01112466777776644 88999999999999999888999888888777776653
No 49
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=31.15 E-value=1.2e+02 Score=27.37 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHhcCCcceEEEEeCCCchhchH---HHHhcccccchhhhhccCCCCcEEEEcCCCHHHH--------
Q 027977 99 FKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSL---WEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEM-------- 167 (216)
Q Consensus 99 F~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pL---Gel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl-------- 167 (216)
++.||+.+.-+...+.|+..+-+ +.-+...... -+++..-.. . . +-+-+++++..|+
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~i~~~Ik~--~-------~-~~i~~~~~s~~e~~~~~~~~g 103 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCI--QGGLNPQLDIEYYEELFRAIKQ--E-------F-PDVHIHAFSPMEVYFLAKNEG 103 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHH--H-------C-CCceEEecCHHHHHHHHHHcC
Confidence 58888777666666778744433 3222222222 223321000 0 0 1233566666553
Q ss_pred ---HHHHHHcccCCCCCc
Q 027977 168 ---MMFIEAFPETGLEPA 182 (216)
Q Consensus 168 ---~~~I~a~k~~Gl~~~ 182 (216)
.+.++.+|+.|+...
T Consensus 104 ~~~~e~l~~LkeAGl~~i 121 (309)
T TIGR00423 104 LSIEEVLKRLKKAGLDSM 121 (309)
T ss_pred CCHHHHHHHHHHcCCCcC
Confidence 578888899998755
No 50
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=1.3e+02 Score=24.11 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhh------ccCCCCcEEEEcCCCHHHHHHHHHHc
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVK------VAESLPRICFLSGLSGEEMMMFIEAF 174 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k------~~~~~~r~vi~sGft~eEl~~~I~a~ 174 (216)
.+++..+|++|.++|+++..+. .+-.+|+... +.+ .+|....- ...+.-|+..+--|+-.++.++++.+
T Consensus 29 p~R~~av~~~les~G~k~~~~y-~T~GeYD~V~--i~E--apDda~~~~~~l~l~s~GnvRt~TL~Afp~~~~~~~lkk~ 103 (104)
T COG4274 29 PKRAAAVRALLESMGGKVKEQY-WTLGEYDVVA--IVE--APDDAVATRFSLALASRGNVRTVTLRAFPVDAMLEILKKM 103 (104)
T ss_pred HHHHHHHHHHHHHcCcEEEEEE-EeeccccEEE--EEe--cCCHHHHHHHHHHHHhcCCeEEEeeccCCHHHHHHHHhhc
Confidence 5788889999999999443322 2222222110 111 12221110 12347889999999998888887653
No 51
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=29.81 E-value=2.1e+02 Score=27.12 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=27.6
Q ss_pred CcEEEEcCCCH--HHHHHHHHHcccC-CCCCccEEEEccCCCCCCHHHHHHHHHHHHHHh
Q 027977 154 PRICFLSGLSG--EEMMMFIEAFPET-GLEPAVFAALVPNSADKPLQELIEEVMGDHEML 210 (216)
Q Consensus 154 ~r~vi~sGft~--eEl~~~I~a~k~~-Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m 210 (216)
...+.++|-.+ +.++++|..+-.. | .+| .++++.|++|++|.
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~l~~~~g-------------~~~--~~~~~~lk~~~r~~ 363 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVSLAAKDG-------------IDW--FEYKKQLKKAEQWN 363 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHHhC-------------ccH--HHHHHHHHHCCCeE
Confidence 35799999765 2244444443332 3 255 89999999999885
No 52
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.60 E-value=2.4e+02 Score=22.25 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCHHHHHHHHHHcc
Q 027977 153 LPRICFLSGLSGEEMMMFIEAFP 175 (216)
Q Consensus 153 ~~r~vi~sGft~eEl~~~I~a~k 175 (216)
.+++.++.|.--++|.+.+..++
T Consensus 75 V~Pl~l~~G~e~~di~~~v~~~~ 97 (127)
T cd03412 75 VQSLHIIPGEEYEKLKREVDAFK 97 (127)
T ss_pred EEeCeeECcHHHHHHHHHHHHHh
Confidence 56677888877777888888877
No 53
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.92 E-value=2.2e+02 Score=25.47 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=53.0
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhccccc-------chhhh----hccCCCCcEEEEcCCCH-H
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQT-------NLEAV----KVAESLPRICFLSGLSG-E 165 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~-------d~e~~----k~~~~~~r~vi~sGft~-e 165 (216)
-|+.|+..+|.+.+++.|++|+--.+ -...+..+..-.-+ +.... ..+..-.++++=+|++. +
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpf-----d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPF-----DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE 126 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE------SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCC-----CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH
Confidence 47899999999999999997663222 23344444221000 00000 01233567888899987 7
Q ss_pred HHHHHHHHcccCCCCCcc--EEE----EccCCCCCCHHHHHHHH
Q 027977 166 EMMMFIEAFPETGLEPAV--FAA----LVPNSADKPLQELIEEV 203 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~i--fAv----lTPtN~~W~l~eLieEL 203 (216)
||+..++.+++.|-..++ -++ +=+++.+++..+.+++.
T Consensus 127 EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 127 EIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKER 170 (241)
T ss_dssp HHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHh
Confidence 899999999777665443 233 22566777777666654
No 54
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=3.6e+02 Score=22.79 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=59.6
Q ss_pred eEEEe---cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 93 ALLLL---GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 93 aILL~---GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
.++++ |++..+...||+-|.+-|+ +++.+..-....-+...-. +. ....-.-+-.++|+..+--++.+
T Consensus 24 ~~~i~dy~Gl~~~ql~~lR~~lr~~g~---~lkV~KNtL~~rAl~~~~~----e~--l~~~l~Gp~ai~fs~~dp~~~~K 94 (175)
T COG0244 24 SVVIVDYRGLTVAQLTELRKKLREAGA---KLKVVKNTLLRRALEEAGL----EG--LDDLLKGPTAIAFSNEDPVAAAK 94 (175)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhCCc---EEEEEhhHHHHHHHHhcch----hh--HHHhccCCeEEEEecCCHHHHHH
Confidence 44554 5579999999999998887 7777765555554443321 11 11122346688999889999999
Q ss_pred HHHHcccC-CCCCccEEEEccC
Q 027977 170 FIEAFPET-GLEPAVFAALVPN 190 (216)
Q Consensus 170 ~I~a~k~~-Gl~~~ifAvlTPt 190 (216)
++..+.+. |-.-++.+..-+.
T Consensus 95 ~~~~f~k~~~~~~~~~~~~~eg 116 (175)
T COG0244 95 LLKDFAKEAGDKAPIKGGVPEG 116 (175)
T ss_pred HHHHHhhhhcccceEEEEEecC
Confidence 99999877 4445555555444
No 55
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=28.40 E-value=4.7e+02 Score=24.65 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=62.3
Q ss_pred ceEEEecCChHHHHHHHHHHHhcC-CcceEEEEeCC--CchhchHHHHhcccccchhhhhc-cCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGFKVEEAVKIRQFLKELD-GEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKV-AESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF~~EE~~kIR~lL~elg-~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~-~~~~~r~vi~sGft~eEl 167 (216)
-.++|+|= + ++|+..|...+ .+.++|+.+++ +|-+.|+..+-.+.-.-+.+.+. ..+.--.++=+|=|+.-|
T Consensus 36 ~~i~LvG~-~---~~i~~~l~~~~~~~ri~iv~a~~vI~m~d~p~~a~R~k~SSm~~a~~lvk~g~ada~VSaGnTGAl~ 111 (316)
T PRK13846 36 VEFTVFAS-S---EVHHQILSNSPLSRSPRIITAEDFVSMEDSPLAAIRKKSSSMALGLDYLQEDKLDAFISTGNTAALV 111 (316)
T ss_pred eEEEEEeC-H---HHHHHHHHhCCCcCceEEEeCCCcccCCCCHHHHHHcCCCHHHHHHHHHHcCCCCEEEecChHHHHH
Confidence 36899993 2 24444555432 12478888876 56677776665531111111110 133556888999999999
Q ss_pred HHHHHHcccC-CCCCccEEEEccCC
Q 027977 168 MMFIEAFPET-GLEPAVFAALVPNS 191 (216)
Q Consensus 168 ~~~I~a~k~~-Gl~~~ifAvlTPtN 191 (216)
..-...++.. |+.+|.+|++.||-
T Consensus 112 a~a~~~lgri~Gi~RPala~~lPt~ 136 (316)
T PRK13846 112 TLARAKIPMFPAVPRPALLVSVPTM 136 (316)
T ss_pred HHHHHHhccCCCCCcceeeeeccCC
Confidence 8888888876 99999999999983
No 56
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=28.30 E-value=2.8e+02 Score=25.30 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCCCCceEEEecCCh----HHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCC-CcEEEEcC
Q 027977 87 PTFGPPALLLLGFKV----EEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESL-PRICFLSG 161 (216)
Q Consensus 87 ~~yGPpaILL~GF~~----EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~-~r~vi~sG 161 (216)
..|+...|-++.-+. ...+.+++.|...|++.+-+..++... .-+..++.. .. ... .|+||+++
T Consensus 128 ~~~~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~--~d~~~~L~~----lk-----~~~~~~viv~~~ 196 (382)
T cd06371 128 RYFRWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDE--KGAREALKK----VR-----SADRVRVVIMCM 196 (382)
T ss_pred HHCCCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCCH--HHHHHHHHH----Hh-----cCCCcEEEEEEe
Confidence 356666666664432 246778888888887433322232111 112222220 11 113 47888877
Q ss_pred CC----HHHHHHHHHHcccCCCCC
Q 027977 162 LS----GEEMMMFIEAFPETGLEP 181 (216)
Q Consensus 162 ft----~eEl~~~I~a~k~~Gl~~ 181 (216)
-. +++...+++..++.|+..
T Consensus 197 ~~~~~~~~~~~~i~~qa~~~Gm~~ 220 (382)
T cd06371 197 HSVLIGGEEQRLLLETALEMGMTD 220 (382)
T ss_pred eccccCcHHHHHHHHHHHHcCCcC
Confidence 54 367889999999999974
No 57
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=28.10 E-value=4e+02 Score=23.12 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCCceEEEecCChHHHHHHHHHHHhcCCc--ceEEEEeCCC-chhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHH
Q 027977 89 FGPPALLLLGFKVEEAVKIRQFLKELDGE--FLEVIFCTED-MIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGE 165 (216)
Q Consensus 89 yGPpaILL~GF~~EE~~kIR~lL~elg~e--~vkVi~vt~e-~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~e 165 (216)
||-.+|.++.-+.+-...+++++.+.+.. .+.+...+.. ++...|..+.. ...++|++.+. .+
T Consensus 127 ~~w~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~-------------~~~d~vv~~~~-~~ 192 (327)
T cd06382 127 FNWKSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKN-------------SGDNRIIIDCS-AD 192 (327)
T ss_pred cCCcEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHh-------------cCceEEEEECC-HH
Confidence 56566666655655666677777766542 2222222221 22322222211 13356666665 57
Q ss_pred HHHHHHHHcccCCCCCccE
Q 027977 166 EMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~if 184 (216)
+...+++.+++.|+....+
T Consensus 193 ~~~~~~~qa~~~g~~~~~~ 211 (327)
T cd06382 193 ILIELLKQAQQVGMMSEYY 211 (327)
T ss_pred HHHHHHHHHHHhCccccce
Confidence 7899999999999876643
No 58
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=28.07 E-value=1.2e+02 Score=24.52 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcc----c
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFP----E 176 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k----~ 176 (216)
.+-+..+-+.|++.+++++-++-++ +.+ .-.+-|||.||.+..++..+...++ +
T Consensus 4 ~~l~~~i~~alddkKAeDIv~lDv~-----------------~~s-----~~tDyfVIatg~s~rhv~Aiad~i~~~~k~ 61 (115)
T COG0799 4 EELLEVIVEALDDKKAEDIVVLDVS-----------------GKS-----SLTDYFVIATGNSSRHVKAIADNVKEELKE 61 (115)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEcc-----------------CCc-----ccccEEEEEEeCchHHHHHHHHHHHHHHHH
Confidence 3445666677777777666554221 111 2278899999999999877766654 4
Q ss_pred CCCCCccEEEEccCCCCCCHHHH
Q 027977 177 TGLEPAVFAALVPNSADKPLQEL 199 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l~eL 199 (216)
.|..+ ..+=--...+|.|-++
T Consensus 62 ~g~~~--~~~EG~~~~~WvliD~ 82 (115)
T COG0799 62 AGEVP--LRIEGLSEGEWVLIDL 82 (115)
T ss_pred cCCCc--ccccCCCcCCEEEEec
Confidence 44422 1222225677766543
No 59
>PF14214 Helitron_like_N: Helitron helicase-like domain at N-terminus
Probab=27.29 E-value=79 Score=26.11 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCH------HHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHH
Q 027977 153 LPRICFLSGLSG------EEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVM 204 (216)
Q Consensus 153 ~~r~vi~sGft~------eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~ 204 (216)
..++++.+.+.| .+-.+++..++..|. +.+|-++|| |..|. ||...+.
T Consensus 72 ~~~i~~~~s~~Gs~~y~~~~~~dl~a~~~~~G~-P~~FiT~s~-~~~w~--ei~~~l~ 125 (184)
T PF14214_consen 72 GKRIVLPSSIRGSPAYWQQRRQDLMAMVRQFGK-PTLFITFSC-NPQWP--EIQQALA 125 (184)
T ss_pred hhhhcccCCCCCcHHHHHHHHHHHHHHHhccCC-CcEEEEEcC-ccccH--HHHHHHH
Confidence 567777677776 446777888888896 689999999 89996 4555554
No 60
>PHA02096 hypothetical protein
Probab=26.03 E-value=68 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCCCCCceEEEecCC-hHHHHHHHHHHHhcCCcceE
Q 027977 86 DPTFGPPALLLLGFK-VEEAVKIRQFLKELDGEFLE 120 (216)
Q Consensus 86 d~~yGPpaILL~GF~-~EE~~kIR~lL~elg~e~vk 120 (216)
...||||+|..++=. ..-.+.-+++++.|.+..+.
T Consensus 61 krlfg~ptiv~inkps~~lan~hkr~~dtmhia~in 96 (103)
T PHA02096 61 KRLFGPPTIVSVNKPSGHLANMHKRMYDTMHIAEIN 96 (103)
T ss_pred hhhcCCCeEEEecCchHHHHHHHHHHhhhhhhhhhc
Confidence 679999999999985 44555667888888775543
No 61
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=25.87 E-value=1.2e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=33.8
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhc
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMN 138 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~ 138 (216)
-|...=...+++.|.++|++.+.|+..++.-++.++..=+.
T Consensus 40 QfG~~Ir~~v~etL~~lgV~~~~v~v~DkGALDc~IrAR~~ 80 (92)
T TIGR01608 40 QFGDDIESTVKETLKLLGVENAVVKVVDKGALNCVIKARTL 80 (92)
T ss_pred HHhHHHHHHHHHHHHHcCCceEEEEEEeCChHHHHHHHHHH
Confidence 34555667788999999999999999999999999876443
No 62
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.83 E-value=2.5e+02 Score=24.44 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
......+++.+.+.|++.+....++. .++...+..+.. .....|++. .+......+++.+++.|
T Consensus 147 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~-------------~~pdaV~~~-~~~~~a~~~~~~~~~~G 212 (341)
T cd06341 147 SAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA-------------AGADAIITV-LDAAVCASVLKAVRAAG 212 (341)
T ss_pred HHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh-------------cCCCEEEEe-cChHHHHHHHHHHHHcC
Confidence 55677788888888885544333322 233333333322 013355544 35556778888888877
Q ss_pred CCCcc
Q 027977 179 LEPAV 183 (216)
Q Consensus 179 l~~~i 183 (216)
+...+
T Consensus 213 ~~~~~ 217 (341)
T cd06341 213 LTPKV 217 (341)
T ss_pred CCCCE
Confidence 76544
No 63
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.77 E-value=1.9e+02 Score=22.46 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred CceEEEecCCh--HHHHHHHHHHHhcCCcceEEEEe----CCCchhchHH-HHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 91 PPALLLLGFKV--EEAVKIRQFLKELDGEFLEVIFC----TEDMIPRSLW-EAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 91 PpaILL~GF~~--EE~~kIR~lL~elg~e~vkVi~v----t~e~~~~pLG-el~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
...+-.|+-.. +...++...|...|.+.+.+... .+...+.-|. ++++.. .. ...+.+||+||
T Consensus 39 ~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~---~~-----~~~d~ivLvSg-- 108 (149)
T cd06167 39 IVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELA---YK-----RRIDTIVLVSG-- 108 (149)
T ss_pred EEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHh---hh-----cCCCEEEEEEC--
Confidence 33444455433 58899999999999843322221 1233333332 222211 11 13688999999
Q ss_pred HHHHHHHHHHcccCCCCCccEEE
Q 027977 164 GEEMMMFIEAFPETGLEPAVFAA 186 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifAv 186 (216)
...+.-++..+|+.|....+++.
T Consensus 109 D~Df~~~i~~lr~~G~~V~v~~~ 131 (149)
T cd06167 109 DSDFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred CccHHHHHHHHHHcCCEEEEEcc
Confidence 34699999999999886555554
No 64
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=25.57 E-value=73 Score=24.31 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhhcCC
Q 027977 165 EEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTGQQ 214 (216)
Q Consensus 165 eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~~~~ 214 (216)
+-++++++.+++.|++--+ ....|..+=.+.+|++=+.+=|+++...+
T Consensus 17 ~~V~~~i~~i~~sgl~y~v--~pm~T~iEGe~dev~~~i~~~~e~~~~~G 64 (92)
T PF01910_consen 17 AYVAEAIEVIKESGLKYEV--GPMGTTIEGELDEVMALIKEAHEALFEAG 64 (92)
T ss_dssp HHHHHHHHHHHTSSSEEEE--ETTEEEEEEEHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCceEE--cCCccEEEecHHHHHHHHHHHHHHHHHcC
Confidence 4588899999999986332 22334455558899999999999988765
No 65
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.55 E-value=3.7e+02 Score=21.88 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCH---HHHHHHHHHcccCCCCC
Q 027977 105 VKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSG---EEMMMFIEAFPETGLEP 181 (216)
Q Consensus 105 ~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~---eEl~~~I~a~k~~Gl~~ 181 (216)
+-+..+|...|. +|+......-.+.+-+.+. .+...++.+|.+.. ..+.+++..+|+.|+..
T Consensus 17 niv~~~L~~~Gf---eVidLG~~v~~e~~v~aa~------------~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 17 KILDHAFTEAGF---NVVNLGVLSPQEEFIDAAI------------ETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHCCC---EEEECCCCCCHHHHHHHHH------------HcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC
Confidence 456667788777 8877665544333333332 12345677776543 56888999999988854
No 66
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=25.26 E-value=27 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=19.5
Q ss_pred eEEEecCChHHHHHHHHHHHhcCC
Q 027977 93 ALLLLGFKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 93 aILL~GF~~EE~~kIR~lL~elg~ 116 (216)
.|.+-||+.++..+|++++..+|+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg 25 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG 25 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC
Confidence 366789998889999999999999
No 67
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.26 E-value=1.4e+02 Score=26.03 Aligned_cols=100 Identities=21% Similarity=0.310 Sum_probs=50.0
Q ss_pred ccCCCCCCCCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCC----CchhchHHHHhcccccchhhhhccCCCCc
Q 027977 80 VPLNADDPTFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTE----DMIPRSLWEAMNTKQTNLEAVKVAESLPR 155 (216)
Q Consensus 80 ~~~~~dd~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~----e~~~~pLGel~~~~~~d~e~~k~~~~~~r 155 (216)
..++...++-|+..|.+=+|+.--...|++++.+- .++.|++ |-......++++ ..-+.++
T Consensus 67 a~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~a-----DvIIIDEIGpMElks~~f~~~ve----------~vl~~~k 131 (179)
T COG1618 67 ARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEA-----DVIIIDEIGPMELKSKKFREAVE----------EVLKSGK 131 (179)
T ss_pred EEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcC-----CEEEEecccchhhccHHHHHHHH----------HHhcCCC
Confidence 33334445555555555555555566788887762 3444433 111112222222 1111222
Q ss_pred --EEEEcCCCHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHH
Q 027977 156 --ICFLSGLSGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELI 200 (216)
Q Consensus 156 --~vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLi 200 (216)
+..+|==+. +-+++.+|+.|- ..+| +||.|.+--+.+.+
T Consensus 132 pliatlHrrsr---~P~v~~ik~~~~-v~v~--lt~~NR~~i~~~Il 172 (179)
T COG1618 132 PLIATLHRRSR---HPLVQRIKKLGG-VYVF--LTPENRNRILNEIL 172 (179)
T ss_pred cEEEEEecccC---ChHHHHhhhcCC-EEEE--EccchhhHHHHHHH
Confidence 333443232 668888898663 4456 99999993333333
No 68
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.61 E-value=3.7e+02 Score=23.92 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=51.4
Q ss_pred CCCCCCceEEEecCC--hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 86 DPTFGPPALLLLGFK--VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 86 d~~yGPpaILL~GF~--~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
+-...-+.|++||+. .-=..-+..-|..+|. ++..++..+... ..+.. -..+-++|.=.++
T Consensus 125 ~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~---~~~~~~d~~~~~--~~~~~------------~~~~Dv~i~iS~s 187 (281)
T COG1737 125 ELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL---NVVALSDTHGQL--MQLAL------------LTPGDVVIAISFS 187 (281)
T ss_pred HHHHcCCeEEEEEechhHHHHHHHHHHHHHcCC---ceeEecchHHHH--HHHHh------------CCCCCEEEEEeCC
Confidence 335566889999983 4444455667788887 777777766555 23322 1134456655566
Q ss_pred H--HHHHHHHHHcccCCCCC
Q 027977 164 G--EEMMMFIEAFPETGLEP 181 (216)
Q Consensus 164 ~--eEl~~~I~a~k~~Gl~~ 181 (216)
| .|+.+++...|+.|.+.
T Consensus 188 G~t~e~i~~a~~ak~~ga~v 207 (281)
T COG1737 188 GYTREIVEAAELAKERGAKV 207 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcE
Confidence 6 56889999999988643
No 69
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.56 E-value=2e+02 Score=25.83 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=34.6
Q ss_pred EEEEcCCCHHHHHHHHHHcccCCCCCccEEEEccCC--CCC------CHHHHHHHHHHH
Q 027977 156 ICFLSGLSGEEMMMFIEAFPETGLEPAVFAALVPNS--ADK------PLQELIEEVMGD 206 (216)
Q Consensus 156 ~vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN--~~W------~l~eLieEL~~E 206 (216)
++++.|++.+|+.+++..+++.|+. +.|--..|.. ..| ...++++.|.+.
T Consensus 160 ~vv~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~ 217 (334)
T TIGR02666 160 TVVMRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGWREKKFVSADEILERLEQA 217 (334)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccchhhcccCHHHHHHHHHhh
Confidence 5788999999999999999999985 3343444432 234 456666666543
No 70
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.25 E-value=91 Score=31.83 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=44.9
Q ss_pred eE-EEecC----ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHH--HHhcccccchh-hhhccCCCCcEEEEcCCCH
Q 027977 93 AL-LLLGF----KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLW--EAMNTKQTNLE-AVKVAESLPRICFLSGLSG 164 (216)
Q Consensus 93 aI-LL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLG--el~~~~~~d~e-~~k~~~~~~r~vi~sGft~ 164 (216)
+| .+||- +.==..+++++|++.|++ ++|..|+-.++..... |++=... +.. ..+......=+.+.++++.
T Consensus 508 KILvaCGsGiGTStmva~kIkk~Lke~GI~-veV~~~~Vsev~s~~~~aDIIVtt~-~La~~i~i~~~~~VIgl~N~i~~ 585 (602)
T PRK09548 508 RILAVCGQGQGSSMMMKMKIKKYLDKRGIP-IIMDSCAVNDYKGKLETIDIIVCSK-HLANEIEFGEGKFVLGVQNMLNP 585 (602)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHcCCC-eEEEEechHhCcccCCCCCEEEEcc-cchhhhccCCCceEEEEecCCCh
Confidence 45 55665 456677899999999995 5666665544433222 2111111 111 0111111111566678888
Q ss_pred HHH-HHHHHHcccC
Q 027977 165 EEM-MMFIEAFPET 177 (216)
Q Consensus 165 eEl-~~~I~a~k~~ 177 (216)
+|+ +++++.+|+.
T Consensus 586 dei~ekI~e~Lk~~ 599 (602)
T PRK09548 586 NSFGDELLELIKKN 599 (602)
T ss_pred HHHHHHHHHHHHHh
Confidence 885 7777777653
No 71
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.13 E-value=4.9e+02 Score=22.77 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=45.7
Q ss_pred CCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|..+|.++.-+ .+-...+++.+...|++.+....... .++..-|..+.. . ....| +.+.
T Consensus 142 ~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~------------~-~~d~v-~~~~ 207 (344)
T cd06345 142 HGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA------------A-DPDVI-IAGF 207 (344)
T ss_pred CCCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHh------------c-CCCEE-EEee
Confidence 566677776553 45567778888888885554443332 233333333321 0 12334 4444
Q ss_pred CHHHHHHHHHHcccCCCCCc
Q 027977 163 SGEEMMMFIEAFPETGLEPA 182 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ 182 (216)
...+...+++.+++.|+...
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~ 227 (344)
T cd06345 208 SGNVGVLFTQQWAEQKVPIP 227 (344)
T ss_pred cCchHHHHHHHHHHcCCCCc
Confidence 55567778888888887533
No 72
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=23.92 E-value=3.9e+02 Score=25.15 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=54.1
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccc-cchhhh-------hccCCCCcEEEEc
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQ-TNLEAV-------KVAESLPRICFLS 160 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~-~d~e~~-------k~~~~~~r~vi~s 160 (216)
+.|+++++ ....+++||+-|..- . +++.-..-++...|+....... .+++.. ...-.-+.-+||+
T Consensus 23 ~~v~Iv~~~nv~s~qlq~IR~~lrg~-a---~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~GnvgliFT 98 (323)
T PTZ00240 23 SCVLFVGMDNVRSQQVHDVRRALRGK-A---EFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFT 98 (323)
T ss_pred CEEEEEEecCCCcHHHHHHHHHhhCC-c---EEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEEEe
Confidence 46778777 478888888888742 2 5666666677777776544211 112221 0112256789999
Q ss_pred CCCHHHHHHHHHHcccC
Q 027977 161 GLSGEEMMMFIEAFPET 177 (216)
Q Consensus 161 Gft~eEl~~~I~a~k~~ 177 (216)
..+-.||.+++..++..
T Consensus 99 n~~p~ev~~~l~~~k~~ 115 (323)
T PTZ00240 99 NNEVQEITSVLDSHRVK 115 (323)
T ss_pred CCCHHHHHHHHHHcCCc
Confidence 99999999999999864
No 73
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.84 E-value=4.6e+02 Score=22.38 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCCC
Q 027977 102 EEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 102 EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~Gl 179 (216)
...+.+++.+.+.|++.+....++. .++...+..+.. ....++++. ...+++..+++++++.|+
T Consensus 151 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~-------------~~~d~i~~~-~~~~~~~~~~~~~~~~g~ 216 (334)
T cd06347 151 GLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKA-------------KNPDVIFLP-GYYTEVGLIAKQARELGI 216 (334)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHh-------------cCCCEEEEc-CchhhHHHHHHHHHHcCC
Confidence 3456677778887775544433322 222233332221 123455554 477789999999999998
Q ss_pred CCccE
Q 027977 180 EPAVF 184 (216)
Q Consensus 180 ~~~if 184 (216)
...++
T Consensus 217 ~~~i~ 221 (334)
T cd06347 217 KVPIL 221 (334)
T ss_pred CCcEE
Confidence 65443
No 74
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=23.59 E-value=2.3e+02 Score=24.27 Aligned_cols=108 Identities=15% Similarity=0.231 Sum_probs=65.0
Q ss_pred EEEecCC-hHHHHHHHHHHHhcC--CcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC-------
Q 027977 94 LLLLGFK-VEEAVKIRQFLKELD--GEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS------- 163 (216)
Q Consensus 94 ILL~GF~-~EE~~kIR~lL~elg--~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft------- 163 (216)
+++||=+ .-..--++.++.++. ....+|++++.+.....+-+.+... ..+.-......-.++++=++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~--~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDG--EIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTT--SHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcc--cchhhhhhhhcCCEEEEecchhhcCchH
Confidence 7888885 666666777766542 1245899998888777666666531 122111112244566665543
Q ss_pred -HHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHH
Q 027977 164 -GEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEV 203 (216)
Q Consensus 164 -~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL 203 (216)
.+++..+++.+++.|-+.++.+-..|.....-..+|.-.+
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 3579999999999986444455577777766566665544
No 75
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.49 E-value=2.1e+02 Score=26.93 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=42.9
Q ss_pred ceEEEecC--ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 92 PALLLLGF--KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 92 paILL~GF--~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
+-+|+=|+ +.|++.++.+++..+++ .|.+++..+. ..++ ..-+.+++.+
T Consensus 259 eyvLI~GvNDs~eda~~L~~ll~~l~~-kVnLIPyN~~-------------~~~~---------------~~ps~e~i~~ 309 (342)
T PRK14465 259 EYVMIPGVNMGRENANKLVKIARSLDC-KINVIPLNTE-------------FFGW---------------RRPTDDEVAE 309 (342)
T ss_pred EEEEECCccCCHHHHHHHHHHHhhCCC-cEEEEccCCC-------------CCCC---------------CCCCHHHHHH
Confidence 46778777 58999999999999875 4566665550 1122 2346778999
Q ss_pred HHHHcccCCCC
Q 027977 170 FIEAFPETGLE 180 (216)
Q Consensus 170 ~I~a~k~~Gl~ 180 (216)
|.+.+++.|+.
T Consensus 310 F~~~L~~~Gi~ 320 (342)
T PRK14465 310 FIMLLEPAGVP 320 (342)
T ss_pred HHHHHHHCCCe
Confidence 99999988874
No 76
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.32 E-value=1e+02 Score=27.43 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=31.2
Q ss_pred CcEEEEcCCCHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHH
Q 027977 154 PRICFLSGLSGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELI 200 (216)
Q Consensus 154 ~r~vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLi 200 (216)
-.-++++++.-+|..+++..+|+.|+..+ -.++|+.-...+..+.
T Consensus 116 vdgviipDlp~ee~~~~~~~~~~~gl~~i--~lv~P~T~~eri~~i~ 160 (256)
T TIGR00262 116 VDGVLVADLPLEESGDLVEAAKKHGVKPI--FLVAPNADDERLKQIA 160 (256)
T ss_pred CCEEEECCCChHHHHHHHHHHHHCCCcEE--EEECCCCCHHHHHHHH
Confidence 35789999999999999999999998543 2345555443443333
No 77
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=23.31 E-value=41 Score=25.51 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027977 191 SADKPLQELIEEVMGDHEM 209 (216)
Q Consensus 191 N~~W~l~eLieEL~~EHe~ 209 (216)
+.+|+|.+|++.|.+..++
T Consensus 4 ~~~~TL~~lid~L~~~~~~ 22 (84)
T PF08825_consen 4 SPSWTLQDLIDSLCEKPEF 22 (84)
T ss_dssp STTSBSHHHHHHHHHSTTT
T ss_pred CccchHHHHHHHHHhChhh
Confidence 5789999999999887655
No 78
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.30 E-value=3.1e+02 Score=20.18 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=40.6
Q ss_pred ceEEEecC--ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEc--CCCHHHH
Q 027977 92 PALLLLGF--KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLS--GLSGEEM 167 (216)
Q Consensus 92 paILL~GF--~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~s--Gft~eEl 167 (216)
++|+++|. +..-...++..|..+|. .+..++... ......... ...+=++++| |-+ .++
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~~~~---~~~~~~~~~--~~~~~~~~~-----------~~~~~~i~iS~~g~~-~~~ 76 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGK---PVVLLSDPH--LQLMSAANL-----------TPGDVVIAISFSGET-KET 76 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHcCC---ceEEecCHH--HHHHHHHcC-----------CCCCEEEEEeCCCCC-HHH
Confidence 67888888 46666667777888776 555553322 222222110 1123344444 333 457
Q ss_pred HHHHHHcccCCC
Q 027977 168 MMFIEAFPETGL 179 (216)
Q Consensus 168 ~~~I~a~k~~Gl 179 (216)
.++++..++.|.
T Consensus 77 ~~~~~~a~~~g~ 88 (139)
T cd05013 77 VEAAEIAKERGA 88 (139)
T ss_pred HHHHHHHHHcCC
Confidence 888888888875
No 79
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.97 E-value=4.2e+02 Score=21.64 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCH---HHHHHHHHHcccCCCCC
Q 027977 105 VKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSG---EEMMMFIEAFPETGLEP 181 (216)
Q Consensus 105 ~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~---eEl~~~I~a~k~~Gl~~ 181 (216)
+-+..+|.+.|. +|+......- ..++++... .+...+|-+|.+.+ +.+.++++.+|+.|+..
T Consensus 19 ~iv~~~l~~~Gf---eVi~LG~~v~---~e~~v~aa~---------~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 19 KILDHAFTNAGF---NVVNLGVLSP---QEEFIKAAI---------ETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred HHHHHHHHHCCC---EEEECCCCCC---HHHHHHHHH---------HcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC
Confidence 456777888887 8887765443 333333111 11334566665443 45788888888888754
Q ss_pred c
Q 027977 182 A 182 (216)
Q Consensus 182 ~ 182 (216)
+
T Consensus 84 ~ 84 (134)
T TIGR01501 84 I 84 (134)
T ss_pred C
Confidence 4
No 80
>PRK00035 hemH ferrochelatase; Reviewed
Probab=22.49 E-value=1.8e+02 Score=26.43 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=39.5
Q ss_pred cEEEEcCCCHH--HHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHH
Q 027977 155 RICFLSGLSGE--EMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDH 207 (216)
Q Consensus 155 r~vi~sGft~e--El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EH 207 (216)
++.+..+|.-. -+.+.|+.+++.|...++.--+-|....-+.+..++++.+.=
T Consensus 93 ~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~ 147 (333)
T PRK00035 93 DLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARAL 147 (333)
T ss_pred CceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHH
Confidence 34555555444 499999999999999888888888877777777777775543
No 81
>PRK01530 hypothetical protein; Reviewed
Probab=22.48 E-value=1.2e+02 Score=24.09 Aligned_cols=26 Identities=4% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 151 ESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 151 ~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
....+.+.+.|++.+++...+..+++
T Consensus 80 tSR~K~i~I~g~~~~~l~~~l~~~~~ 105 (105)
T PRK01530 80 THSLKTILIKNINEDYLNLIINSYIK 105 (105)
T ss_pred CCCceEEEEeCCCHHHHHHHHHhhcC
Confidence 44788999999999999999987653
No 82
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=22.35 E-value=2.8e+02 Score=20.76 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=43.0
Q ss_pred ceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHH
Q 027977 92 PALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFI 171 (216)
Q Consensus 92 paILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I 171 (216)
..||++|-...-..|++.+|+. |+ +|..+.++. ..+...+.-...+++ ..-..-.+++.--..+++++.|
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~-gA---~v~vis~~~--~~~~~~i~~~~~~~~----~~l~~~~lV~~at~d~~~n~~i 77 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA-GA---KVTVISPEI--EFSEGLIQLIRREFE----EDLDGADLVFAATDDPELNEAI 77 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC-TB---EEEEEESSE--HHHHTSCEEEESS-G----GGCTTESEEEE-SS-HHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC---EEEEECCch--hhhhhHHHHHhhhHH----HHHhhheEEEecCCCHHHHHHH
Confidence 5789999999999999988774 56 777788876 212222221222232 1122334555555555555555
Q ss_pred HHc-ccCCC
Q 027977 172 EAF-PETGL 179 (216)
Q Consensus 172 ~a~-k~~Gl 179 (216)
... |+.|+
T Consensus 78 ~~~a~~~~i 86 (103)
T PF13241_consen 78 YADARARGI 86 (103)
T ss_dssp HHHHHHTTS
T ss_pred HHHHhhCCE
Confidence 444 44554
No 83
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.35 E-value=4e+02 Score=21.12 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=28.6
Q ss_pred eEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhc
Q 027977 93 ALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMN 138 (216)
Q Consensus 93 aILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~ 138 (216)
+|-+||. +=.-.++.++.|.+.|+++.-+-......-..-|-+++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~ 48 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILS 48 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH
Confidence 4667777 567888889999999887654433333333333444443
No 84
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.22 E-value=3e+02 Score=24.78 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCc-EEEE---cCCCH-
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPR-ICFL---SGLSG- 164 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r-~vi~---sGft~- 164 (216)
|-..|++--+..||...+.+.+++.|++.+.++ ++.--...+..++. .-+ ||.+ .|+||
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv--~PtT~~eri~~i~~--------------~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLI--APTSSKSRIQKIAR--------------AAPGCIYLVSTTGVTGL 182 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEE--CCCCCHHHHHHHHH--------------hCCCcEEEEcCCCCCCC
Q ss_pred -----HHHHHHHHHcccC-CCCCcc-EEEEccCC
Q 027977 165 -----EEMMMFIEAFPET-GLEPAV-FAALVPNS 191 (216)
Q Consensus 165 -----eEl~~~I~a~k~~-Gl~~~i-fAvlTPtN 191 (216)
+++.++++.+|+. ++|..+ |-+-+|.+
T Consensus 183 ~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~ 216 (263)
T CHL00200 183 KTELDKKLKKLIETIKKMTNKPIILGFGISTSEQ 216 (263)
T ss_pred CccccHHHHHHHHHHHHhcCCCEEEECCcCCHHH
No 85
>PRK03739 2-isopropylmalate synthase; Validated
Probab=22.14 E-value=8e+02 Score=24.55 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchh-chHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIP-RSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~-~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
.|+.++.-+|-+.|.++|++.+.+=+-.-...+ +.+..++.. .. .....+++.++-.-...++..+.+++.
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~---~~-----~~~~~~i~~l~r~~~~di~~a~~a~~~ 119 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEE---GL-----IPDDVTIQVLTQAREHLIERTFEALEG 119 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHh---cC-----CCCCCEEEEEeccchhHHHHHHHHhcC
Confidence 689999999999999999965555321111111 333434321 00 011345677777777889999999886
Q ss_pred CCCCCc-cEEEEcc----CCCCCCHHHHHHHHHHHHHHhh
Q 027977 177 TGLEPA-VFAALVP----NSADKPLQELIEEVMGDHEMLT 211 (216)
Q Consensus 177 ~Gl~~~-ifAvlTP----tN~~W~l~eLieEL~~EHe~m~ 211 (216)
.+.+.+ +|..+.+ .|.+++..+.++.+.+==+|.+
T Consensus 120 ~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~ 159 (552)
T PRK03739 120 AKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVK 159 (552)
T ss_pred CCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 665444 3444443 5889999999887776444443
No 86
>PLN02363 phosphoribosylanthranilate isomerase
Probab=22.09 E-value=4.5e+02 Score=23.64 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCCCCC--ceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchH
Q 027977 85 DDPTFGP--PALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSL 133 (216)
Q Consensus 85 dd~~yGP--paILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pL 133 (216)
.++.+|. +.|=+||....|-.+ ++.++|++.+=+++.++.-..-+.
T Consensus 38 ~~~~~~~~~~~VKICGit~~eda~---~a~~~GaD~iGfIf~~~SpR~Vs~ 85 (256)
T PLN02363 38 KDDERGKDRPLVKMCGITSARDAA---MAVEAGADFIGMILWPKSKRSISL 85 (256)
T ss_pred ccccccCCCceEEECCCCcHHHHH---HHHHcCCCEEEEecCCCCCCcCCH
Confidence 3444444 456679996444333 445688888888776654443333
No 87
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=22.02 E-value=1.4e+02 Score=23.98 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=37.9
Q ss_pred ecCChHHHHHHHH----HHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHH
Q 027977 97 LGFKVEEAVKIRQ----FLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFI 171 (216)
Q Consensus 97 ~GF~~EE~~kIR~----lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I 171 (216)
+|+++||.+.|+. -|..+|+.+. +...++.+.+.+..+..+ .|+|+|-+|..+.+
T Consensus 43 ~gLTeEe~~AV~~rD~~~Li~lGgn~y---------~l~K~~~~~g~~~~~~~a-----------~mtG~t~eef~~~~ 101 (106)
T cd07921 43 FGLTEEQKQAVLDRDWLRLLELGGNIY---------YLLKLAAIDGKSMQDIGA-----------QMTGMTEEEFRAMM 101 (106)
T ss_pred cCCCHHHHHHHHhCCHHHHHHhcCcHH---------HHHHHHHHhCCcHHHHHH-----------HhcCCCHHHHHHHH
Confidence 6889999988875 3666777433 567777777765555443 37899998865544
No 88
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=21.83 E-value=3.5e+02 Score=20.53 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc-----CC
Q 027977 104 AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE-----TG 178 (216)
Q Consensus 104 ~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~-----~G 178 (216)
++.+-++|.+.+++++.++-+++. + ...+=|||-+|.+...+..+...+++ .|
T Consensus 2 ~~~i~~~l~~~k~~dI~v~dv~~~---------------------~-~~~dy~II~T~~S~rh~~aia~~v~~~~~k~~~ 59 (100)
T PF02410_consen 2 LEEIVEALEDKKAEDIVVLDVREK---------------------S-SWADYFIIATGRSERHVRAIADEVEKALKKEYG 59 (100)
T ss_dssp HHHHHHHHHHTT-EEEEEEEGCTT---------------------B-SS-SEEEEEEESSHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHcCCCCeEEEECCCC---------------------C-cccCEEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence 456778888998888877755440 1 22567999999999988776655543 23
Q ss_pred CCCccEEEEccCCCCCCHH
Q 027977 179 LEPAVFAALVPNSADKPLQ 197 (216)
Q Consensus 179 l~~~ifAvlTPtN~~W~l~ 197 (216)
. ....+--..+.+|.+-
T Consensus 60 ~--~~~~~eG~~~~~W~lv 76 (100)
T PF02410_consen 60 E--RPLRIEGLDESDWVLV 76 (100)
T ss_dssp ------EEESTTTTSEEEE
T ss_pred C--cccccCCCCCCCEEEE
Confidence 2 2223334455577653
No 89
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=21.79 E-value=5e+02 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEcCCCHHHHHHHHHHcccCCCCC
Q 027977 155 RICFLSGLSGEEMMMFIEAFPETGLEP 181 (216)
Q Consensus 155 r~vi~sGft~eEl~~~I~a~k~~Gl~~ 181 (216)
++||+.+ ..++...+++.+++.|+..
T Consensus 203 ~vii~~~-~~~~~~~~~~qa~~~g~~~ 228 (396)
T cd06373 203 RVVIMCA-SPDTVREIMLAAHRLGLTS 228 (396)
T ss_pred cEEEEec-CHHHHHHHHHHHHHcCCCC
Confidence 6777766 6678999999999999864
No 90
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=21.64 E-value=6.1e+02 Score=22.97 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=46.7
Q ss_pred CCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|..++-+++-+ .+-.+.+++.+.++|++.+....++. .++..-+..+.. ....+|++.|+.
T Consensus 160 ~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~-------------~~~d~v~~~~~~ 226 (369)
T PRK15404 160 KPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKK-------------ENVDFVYYGGYH 226 (369)
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHh-------------cCCCEEEECCCc
Confidence 44455554442 45566788889999985443333322 233322332221 123467777766
Q ss_pred HHHHHHHHHHcccCCCCCccE
Q 027977 164 GEEMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~if 184 (216)
. +...+++.+++.|+...++
T Consensus 227 ~-~~~~~~k~~~~~G~~~~~i 246 (369)
T PRK15404 227 P-EMGQILRQAREAGLKTQFM 246 (369)
T ss_pred h-HHHHHHHHHHHCCCCCeEE
Confidence 5 6788999999999875443
No 91
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=21.61 E-value=1.4e+02 Score=25.77 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=36.8
Q ss_pred HHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhh
Q 027977 166 EMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEMLT 211 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~ 211 (216)
..++++.-++++|..+.+.|+-+|.+.=-++.|+++...+.-+..+
T Consensus 53 H~~k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt 98 (167)
T COG1528 53 HAMKLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVT 98 (167)
T ss_pred HHHHHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999998888999887664433333
No 92
>PLN02834 3-dehydroquinate synthase
Probab=21.58 E-value=2.6e+02 Score=26.97 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhh-hhc--cCC-CCcEEEEcCCCHHHHHHHHHHc
Q 027977 99 FKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEA-VKV--AES-LPRICFLSGLSGEEMMMFIEAF 174 (216)
Q Consensus 99 F~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~-~k~--~~~-~~r~vi~sGft~eEl~~~I~a~ 174 (216)
++.++.+++..+|..+|. ++..-. ..-...+.+++..+.+...+ ..- ... .-+..+...++.++|.+.++.+
T Consensus 353 ~~~~~~~~i~~ll~~~gL---P~~~~~-~~~~~~~~~~~~~dkK~~~~~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~~ 428 (433)
T PLN02834 353 IDMSLVNRIFALLKRAKL---PTNPPE-KMTVEMFKSLMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRAF 428 (433)
T ss_pred CCHHHHHHHHHHHHHcCC---CCcccc-cCCHHHHHHHHhhcccccCCeEEEEEecCCCCCEEEeCCCCHHHHHHHHHHH
Confidence 378889999999999998 433211 11122333444322221110 000 011 2234444567888888888765
Q ss_pred cc
Q 027977 175 PE 176 (216)
Q Consensus 175 k~ 176 (216)
.+
T Consensus 429 ~~ 430 (433)
T PLN02834 429 CK 430 (433)
T ss_pred Hh
Confidence 44
No 93
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.55 E-value=1.6e+02 Score=27.79 Aligned_cols=29 Identities=31% Similarity=0.265 Sum_probs=23.9
Q ss_pred CceEEEecC-ChHHHHHHHHHHHhcCCcce
Q 027977 91 PPALLLLGF-KVEEAVKIRQFLKELDGEFL 119 (216)
Q Consensus 91 PpaILL~GF-~~EE~~kIR~lL~elg~e~v 119 (216)
|..+.++|+ +......|+++|.++|++.+
T Consensus 153 ~~~vniiG~~~~~d~~elk~lL~~~Gi~v~ 182 (407)
T TIGR01279 153 QRALVLVGSVNDIVADQLRLELKQLGIPVV 182 (407)
T ss_pred CCcEEEEeccChhhHHHHHHHHHHcCCeEE
Confidence 578999999 56668999999999999443
No 94
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=21.19 E-value=1.3e+02 Score=23.16 Aligned_cols=17 Identities=47% Similarity=0.772 Sum_probs=13.2
Q ss_pred ecCChHHHHHHHHHHHh
Q 027977 97 LGFKVEEAVKIRQFLKE 113 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~e 113 (216)
+|++.+|.+.+++.|.+
T Consensus 64 f~l~~eea~eL~~fl~~ 80 (81)
T PF11256_consen 64 FGLSEEEAEELREFLYE 80 (81)
T ss_pred hCCCHHHHHHHHHHHhh
Confidence 67788888888888765
No 95
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.17 E-value=5.8e+02 Score=22.52 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|..+|-++..+ ..-...+++.|.+.|++.+....++. .++...+..+. ....+.|++.+.
T Consensus 136 ~~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~-------------~~~~d~v~~~~~ 202 (347)
T cd06336 136 PGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLL-------------AEKPDVIFLGGP 202 (347)
T ss_pred cCCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHH-------------hcCCCEEEEcCC
Confidence 466666665553 45566677888888874433322322 22222222221 113467888888
Q ss_pred CHHHHHHHHHHcccCCCCCccE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~if 184 (216)
..++...+++.+++.|+...++
T Consensus 203 ~~~~~~~~~~~~~~~g~~~~~~ 224 (347)
T cd06336 203 SPAPAALVIKQARELGFKGGFL 224 (347)
T ss_pred CchHHHHHHHHHHHcCCCccEE
Confidence 7768999999999998875443
No 96
>PRK10329 glutaredoxin-like protein; Provisional
Probab=21.05 E-value=3.3e+02 Score=19.72 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=37.1
Q ss_pred EEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHH
Q 027977 94 LLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIE 172 (216)
Q Consensus 94 ILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~ 172 (216)
|.+|.-+ =--=.+.|++|++.|+++. .+.++++. ....++ .. .....++.-...+ ..++||..++|++++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~-~idi~~~~--~~~~~~-~~--~g~~~vPvv~i~~--~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFE-MINVDRVP--EAAETL-RA--QGFRQLPVVIAGD--LSWSGFRPDMINRLHP 74 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceE-EEECCCCH--HHHHHH-HH--cCCCCcCEEEECC--EEEecCCHHHHHHHHH
Confidence 4444442 2334568899999999543 44554432 111111 11 1111211100011 3477999999999886
Q ss_pred Hc
Q 027977 173 AF 174 (216)
Q Consensus 173 a~ 174 (216)
+-
T Consensus 75 ~~ 76 (81)
T PRK10329 75 AP 76 (81)
T ss_pred hh
Confidence 53
No 97
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=21.03 E-value=4.4e+02 Score=25.28 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=51.9
Q ss_pred cCCccccCC--C-CCCCCCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhh
Q 027977 75 EDSKFVPLN--A-DDPTFGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAV 147 (216)
Q Consensus 75 ~d~~f~~~~--~-dd~~yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~ 147 (216)
-|+.|.-++ + .+.++.|-.|+++|+. ..=++.+-+.+..-|- .++. .++.+
T Consensus 57 pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~---~~Vv------------------~~~Rg- 114 (345)
T COG0429 57 PDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGW---LVVV------------------FHFRG- 114 (345)
T ss_pred CCCCEEEEeeccCccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCC---eEEE------------------Eeccc-
Confidence 788888888 2 4668999999999993 2223333334444342 3321 12221
Q ss_pred hccCC--CCcEEEEcCCCHHHHHHHHHHcccCCCCCccEEEEc
Q 027977 148 KVAES--LPRICFLSGLSGEEMMMFIEAFPETGLEPAVFAALV 188 (216)
Q Consensus 148 k~~~~--~~r~vi~sGft~eEl~~~I~a~k~~Gl~~~ifAvlT 188 (216)
|... .-+.+.=+|-| +++..+++-+++.+-++++.||=.
T Consensus 115 -cs~~~n~~p~~yh~G~t-~D~~~~l~~l~~~~~~r~~~avG~ 155 (345)
T COG0429 115 -CSGEANTSPRLYHSGET-EDIRFFLDWLKARFPPRPLYAVGF 155 (345)
T ss_pred -ccCCcccCcceecccch-hHHHHHHHHHHHhCCCCceEEEEe
Confidence 1111 22344445555 667777777777766677666644
No 98
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=20.75 E-value=2e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc
Q 027977 103 EAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT 139 (216)
Q Consensus 103 E~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~ 139 (216)
.+..++++|..+|+ +++.++-.+.+-.+|.++..
T Consensus 87 q~~~i~~~l~~~gi---~~~~~~g~EADDvIatla~~ 120 (169)
T PF02739_consen 87 QLPYIKELLEALGI---PVLEVPGYEADDVIATLAKK 120 (169)
T ss_dssp HHHHHHHHHHHTTS---EEEEETTB-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---CEecCCCCcHHHHHHHHHhh
Confidence 35678899999998 88899999999999999873
No 99
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=20.64 E-value=5.5e+02 Score=22.06 Aligned_cols=66 Identities=15% Similarity=0.376 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeC--CCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCT--EDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt--~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
.+....+++.+.+.|++.+....++ ..++..-+..+.. ....+|++. +...+...+++.+++.|
T Consensus 148 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~-------------~~pd~v~~~-~~~~~~~~~~~~~~~~g 213 (336)
T cd06360 148 YEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD-------------DVPDAVFVF-FAGGDAIKFVKQYDAAG 213 (336)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHh-------------cCCCEEEEe-cccccHHHHHHHHHHcC
Confidence 5556778888888887544333332 2233322222221 123355554 44677889999999999
Q ss_pred CC
Q 027977 179 LE 180 (216)
Q Consensus 179 l~ 180 (216)
+.
T Consensus 214 ~~ 215 (336)
T cd06360 214 LK 215 (336)
T ss_pred Cc
Confidence 83
No 100
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.45 E-value=5.6e+02 Score=23.54 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCHHHHHHHHHHcccCCCCCc
Q 027977 153 LPRICFLSGLSGEEMMMFIEAFPETGLEPA 182 (216)
Q Consensus 153 ~~r~vi~sGft~eEl~~~I~a~k~~Gl~~~ 182 (216)
.++.+|+.+ ..+++..+++..++.|+...
T Consensus 178 ~~~~iil~~-~~~~~~~il~qa~~~gm~~~ 206 (371)
T cd06388 178 QEKKFVIDC-EIERLQNILEQIVSVGKHVK 206 (371)
T ss_pred ccEEEEEEC-CHHHHHHHHHHHHhcCcccc
Confidence 345666655 55778999999999999766
No 101
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=20.35 E-value=79 Score=21.98 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=10.7
Q ss_pred ecCChHHHHHHHHHH
Q 027977 97 LGFKVEEAVKIRQFL 111 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL 111 (216)
+||+++++++||+.+
T Consensus 53 lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 53 LGLSEEDIERLRERL 67 (68)
T ss_dssp -T--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc
Confidence 699999999999875
No 102
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=20.32 E-value=3.3e+02 Score=24.75 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=46.4
Q ss_pred CCceEEEecCCh---HHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccc--cch-----hhhhcc-----CCCC
Q 027977 90 GPPALLLLGFKV---EEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQ--TNL-----EAVKVA-----ESLP 154 (216)
Q Consensus 90 GPpaILL~GF~~---EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~--~d~-----e~~k~~-----~~~~ 154 (216)
.++.|-|+|... .+...|+++|..+|+ +|..+-.. ..++.++-+... .+. .....+ ..-.
T Consensus 151 ~~~~vNlig~~~~~~~d~~el~~ll~~~G~---~v~~~~~~--~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 151 EPGSVNLIGGYNLGGGDLRELKRLLEEMGI---RVNALFDG--GTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCcEEEECCCCCchhhHHHHHHHHHHcCC---cEEEEcCC--CCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 467899999842 288999999999998 65555433 334444433111 000 000000 1134
Q ss_pred cEEEEcCCCHHHHHHHHHHcccC
Q 027977 155 RICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 155 r~vi~sGft~eEl~~~I~a~k~~ 177 (216)
+.+...-+.-+..++++..+-+.
T Consensus 226 p~~~~~p~G~~~t~~~l~~i~~~ 248 (399)
T cd00316 226 PYILINPIGLEATDAFLRKLAEL 248 (399)
T ss_pred CeEEeCCcCHHHHHHHHHHHHHH
Confidence 45555555556677777766553
No 103
>PLN02591 tryptophan synthase
Probab=20.08 E-value=4e+02 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhc
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMN 138 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~ 138 (216)
|=..+|+-.+.-||...+++.+++.|++.+.++ ++..-...+..++.
T Consensus 106 Gv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv--~Ptt~~~ri~~ia~ 152 (250)
T PLN02591 106 GVHGLVVPDLPLEETEALRAEAAKNGIELVLLT--TPTTPTERMKAIAE 152 (250)
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe--CCCCCHHHHHHHHH
Confidence 345688888888999999999999999776655 33333333444443
No 104
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.07 E-value=78 Score=27.23 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.9
Q ss_pred EEEecC-ChHHHHHHHHHHH
Q 027977 94 LLLLGF-KVEEAVKIRQFLK 112 (216)
Q Consensus 94 ILL~GF-~~EE~~kIR~lL~ 112 (216)
+.|||| +.+|.+-++.++.
T Consensus 58 ~~LyGF~~~~Er~lF~~Li~ 77 (183)
T PRK14601 58 NKLYGFLDKDEQKMFEMLLK 77 (183)
T ss_pred ceeeCCCCHHHHHHHHHHhc
Confidence 589999 6888887777654
No 105
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=20.06 E-value=78 Score=27.29 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEcCCCHHHHHHHHHHcccCCCCCcc-------EEEEccCCCCCCHHHHHHH
Q 027977 157 CFLSGLSGEEMMMFIEAFPETGLEPAV-------FAALVPNSADKPLQELIEE 202 (216)
Q Consensus 157 vi~sGft~eEl~~~I~a~k~~Gl~~~i-------fAvlTPtN~~W~l~eLieE 202 (216)
++++|++.++..+++..+.+.|++--+ +.+++|...--....++..
T Consensus 21 ~Ly~~L~~~da~~I~~~L~~~gI~y~~~~~~~~g~~I~Vp~~~~~~ar~~La~ 73 (193)
T TIGR02544 21 LLYSGLSEREANEMLAVLMRHGIDAEKEGSGKGGYTISVEESDFARAVELLRQ 73 (193)
T ss_pred ecccCCCHHHHHHHHHHHHHCCCCeEEeecCCCCeEEEEcHHHHHHHHHHHHH
No 106
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.02 E-value=5.1e+02 Score=24.21 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccc----------cchhhhh-ccCCCCcEEEEcCCCH-H
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQ----------TNLEAVK-VAESLPRICFLSGLSG-E 165 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~----------~d~e~~k-~~~~~~r~vi~sGft~-e 165 (216)
-|+.|...++.+.+++.|++++ +.-+-...+..+..-.- -++.=.+ .+..-.++++=+|+.. +
T Consensus 73 el~~e~~~~L~~~~~~~Gi~~~-----stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~ 147 (327)
T TIGR03586 73 HTPWEWHKELFERAKELGLTIF-----SSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLE 147 (327)
T ss_pred hCCHHHHHHHHHHHHHhCCcEE-----EccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHH
Confidence 4778899999999999999665 34444445544433100 0010000 1233567888888865 7
Q ss_pred HHHHHHHHcccCCCCCcc
Q 027977 166 EMMMFIEAFPETGLEPAV 183 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~i 183 (216)
|+...+..+++.|-+.++
T Consensus 148 Ei~~Av~~i~~~g~~~i~ 165 (327)
T TIGR03586 148 EIQEAVEACREAGCKDLV 165 (327)
T ss_pred HHHHHHHHHHHCCCCcEE
Confidence 799999999988875443
Done!